AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0597770


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0597770 MtrunA17_Chr4g0020581 98.621 290 4 0 1 290 1 290 0.0 595
Msa0597770 MtrunA17_Chr7g0257111 83.039 283 48 0 8 290 8 290 1.58e-179 503
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0597770 AT2G41540.3 82.746 284 49 0 7 290 12 295 1.45e-177 498
Msa0597770 AT2G41540.1 82.746 284 49 0 7 290 12 295 1.45e-177 498
Msa0597770 AT2G41540.4 82.746 284 49 0 7 290 12 295 1.45e-177 498
Msa0597770 AT2G41540.2 82.746 284 49 0 7 290 12 295 1.45e-177 498
Msa0597770 AT3G07690.2 83.088 272 46 0 19 290 17 288 3.49e-172 484
Msa0597770 AT3G07690.1 83.643 269 44 0 19 287 17 285 4.48e-171 482

Find 71 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCATCAACTTTCCCCATT+AGG 0.251148 4_2:-30720411 None:intergenic
GGTTCTCTTCAAAGTGTAAA+TGG 0.275107 4_2:+30720355 Msa0597770:CDS
ATCATCAACTTTCCCCATTA+GGG 0.290579 4_2:-30720410 None:intergenic
TTGTGTTGGAGGTGGTGCTT+GGG 0.318205 4_2:+30720450 Msa0597770:CDS
TTTGTGTTGGAGGTGGTGCT+TGG 0.332168 4_2:+30720449 Msa0597770:CDS
ATTGAAAATATTCTCTATCT+TGG 0.332464 4_2:+30721215 Msa0597770:CDS
TCGAGGGGAGATTAGGTGAT+AGG 0.347018 4_2:+30720659 Msa0597770:CDS
AGTTCCTGTCATTATTTCAT+TGG 0.352790 4_2:+30720876 Msa0597770:CDS
TGTCATTATTTCATTGGCTA+AGG 0.362222 4_2:+30720882 Msa0597770:CDS
TAAGGGTGTGGAGGCTGAAT+TGG 0.382414 4_2:+30720900 Msa0597770:CDS
TACACCTGTTTGCCCTTTGA+AGG 0.390970 4_2:+30720735 Msa0597770:CDS
GAAGGTTGTGACGAATTTGC+AGG 0.392149 4_2:+30720753 Msa0597770:CDS
ATGTGTTGAGGAGGTTGATT+AGG 0.393435 4_2:+30720614 Msa0597770:CDS
TCTTGTTACTCATGAAGTTA+TGG 0.394359 4_2:+30721370 Msa0597770:CDS
TTGAAGAAATTAGTAAGTAT+TGG 0.395541 4_2:+30720839 Msa0597770:CDS
GCTCTATCAACAGCTCTTCC+TGG 0.408239 4_2:-30720550 None:intergenic
TTAAAGAATGTATATGCTAT+TGG 0.411177 4_2:+30721398 Msa0597770:CDS
GATGAGCTTAGAACCCTAAT+GGG 0.411719 4_2:+30720397 Msa0597770:CDS
TGATGAGCTTAGAACCCTAA+TGG 0.413049 4_2:+30720396 Msa0597770:CDS
CTTGTTACTCATGAAGTTAT+GGG 0.422177 4_2:+30721371 Msa0597770:CDS
CGAATTTGCAGGAAGCTGTA+TGG 0.426348 4_2:+30720764 Msa0597770:CDS
AAATATGTCGAGGGGAGATT+AGG 0.426665 4_2:+30720652 Msa0597770:CDS
TAAATCTCGGAGGCAATGTT+AGG 0.432930 4_2:-30721242 None:intergenic
GGTGTTATGATCCGCGGCTC+AGG 0.435974 4_2:-30720925 None:intergenic
ATATTCTTTGTTGTAAATCT+CGG 0.448562 4_2:-30721255 None:intergenic
TATTTCATTGGCTAAGGGTG+TGG 0.456675 4_2:+30720888 Msa0597770:CDS
GTCATTATTTCATTGGCTAA+GGG 0.457401 4_2:+30720883 Msa0597770:CDS
ACAACCTTCAAAGGGCAAAC+AGG 0.479400 4_2:-30720739 None:intergenic
GAAAATATTCTCTATCTTGG+AGG 0.480816 4_2:+30721218 Msa0597770:CDS
GCTATGTTACAAGAGGCTTA+TGG 0.483493 4_2:+30720487 Msa0597770:CDS
AATGTATATGCTATTGGAGC+AGG 0.498847 4_2:+30721404 Msa0597770:CDS
TTGAGAATAGTTTGTGTTGG+AGG 0.502821 4_2:+30720439 Msa0597770:CDS
AACCATCATGGATACTCAAA+TGG 0.503751 4_2:+30720334 Msa0597770:CDS
TTCATTGGCTAAGGGTGTGG+AGG 0.505926 4_2:+30720891 Msa0597770:CDS
AAATTCGTCACAACCTTCAA+AGG 0.506986 4_2:-30720748 None:intergenic
TAATTTCTTCAAACACCTCA+CGG 0.507384 4_2:-30720828 None:intergenic
GTTTGAAGTGATTAATTCGA+GGG 0.516179 4_2:+30720588 Msa0597770:CDS
CCAACACAAACTATTCTCAA+TGG 0.516452 4_2:-30720436 None:intergenic
TATGCAAATGCTCGAATATG+TGG 0.524238 4_2:+30721275 Msa0597770:CDS
ACCTCACGGGTTTCTGTCGA+TGG 0.528482 4_2:-30720814 None:intergenic
GATGCTGACATTGTGATTAA+CGG 0.543527 4_2:+30720787 Msa0597770:CDS
AATTTCTTCAAACACCTCAC+GGG 0.548801 4_2:-30720827 None:intergenic
CGAGGGGAGATTAGGTGATA+GGG 0.549275 4_2:+30720660 Msa0597770:CDS
CCATTGAGAATAGTTTGTGT+TGG 0.551150 4_2:+30720436 Msa0597770:CDS
AGAATAGTTTGTGTTGGAGG+TGG 0.557952 4_2:+30720442 Msa0597770:CDS
GGCAGGCGCACTTTATAGTG+TGG 0.559562 4_2:+30721336 Msa0597770:CDS
TGTGTTGGAGGTGGTGCTTG+GGG 0.568789 4_2:+30720451 Msa0597770:CDS
AATTCGTCACAACCTTCAAA+GGG 0.569811 4_2:-30720747 None:intergenic
TGAAGTGATTAATTCGAGGG+AGG 0.572910 4_2:+30720591 Msa0597770:CDS
TGTTTGAAGTGATTAATTCG+AGG 0.574810 4_2:+30720587 Msa0597770:CDS
GAATTTGCAGGAAGCTGTAT+GGG 0.578928 4_2:+30720765 Msa0597770:CDS
TTAGCCAATGAAATAATGAC+AGG 0.582773 4_2:-30720880 None:intergenic
AACCATTTGAGTATCCATGA+TGG 0.585718 4_2:-30720336 None:intergenic
GTTTACAGCTATGTTACAAG+AGG 0.586719 4_2:+30720480 Msa0597770:CDS
GGATCAAAGATGAACCATCA+TGG 0.587501 4_2:+30720322 None:intergenic
CGAGGGAGGATGTGTTGAGG+AGG 0.589261 4_2:+30720605 Msa0597770:CDS
GTTACTCATGAAGTTATGGG+TGG 0.597858 4_2:+30721374 Msa0597770:CDS
TTCAAACAAATGCGTAGCCG+TGG 0.598990 4_2:-30720572 None:intergenic
ATTAGGATATGGAGAAGACC+AGG 0.601604 4_2:+30720532 Msa0597770:CDS
TGCGTATTTGAAATATGTCG+AGG 0.602106 4_2:+30720642 Msa0597770:CDS
GCAGGCGCACTTTATAGTGT+GGG 0.608719 4_2:+30721337 Msa0597770:CDS
CTGAATTGGTTCCTGAGCCG+CGG 0.610242 4_2:+30720914 Msa0597770:CDS
GCGTATTTGAAATATGTCGA+GGG 0.611600 4_2:+30720643 Msa0597770:CDS
TTCTTTGTTGTAAATCTCGG+AGG 0.618426 4_2:-30721252 None:intergenic
ATTCGAGGGAGGATGTGTTG+AGG 0.636238 4_2:+30720602 Msa0597770:CDS
AGCGTAGGTGTTATGATCCG+CGG 0.638818 4_2:-30720931 None:intergenic
AAGAGCTGTTGATAGAGCCA+CGG 0.655534 4_2:+30720555 Msa0597770:CDS
GCTCGACTGATCATTAGCGT+AGG 0.663687 4_2:-30720946 None:intergenic
CGTATTTGAAATATGTCGAG+GGG 0.666107 4_2:+30720644 Msa0597770:CDS
ATGAGCTTAGAACCCTAATG+GGG 0.672787 4_2:+30720398 Msa0597770:CDS
GCCATCGACAGAAACCCGTG+AGG 0.775448 4_2:+30720813 Msa0597770:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGAAGAAATTAGTAAGTAT+TGG + chr4_2:30720839-30720858 Msa0597770:CDS 20.0%
!! AAACAATAAATTTCATTGTG+CGG - chr4_2:30721039-30721058 None:intergenic 20.0%
!!! AGATAGAGAATATTTTCAAT+GGG - chr4_2:30721215-30721234 None:intergenic 20.0%
!!! AAGATAGAGAATATTTTCAA+TGG - chr4_2:30721216-30721235 None:intergenic 20.0%
!! ATTGAAAATATTCTCTATCT+TGG + chr4_2:30721215-30721234 Msa0597770:CDS 20.0%
!!! ATATTCTTTGTTGTAAATCT+CGG - chr4_2:30721258-30721277 None:intergenic 20.0%
!! TTAAAGAATGTATATGCTAT+TGG + chr4_2:30721398-30721417 Msa0597770:CDS 20.0%
!! TTGAAGAAATTAGTAAGTAT+TGG + chr4_2:30720839-30720858 Msa0597770:CDS 20.0%
!! AAACAATAAATTTCATTGTG+CGG - chr4_2:30721039-30721058 None:intergenic 20.0%
!!! AGATAGAGAATATTTTCAAT+GGG - chr4_2:30721215-30721234 None:intergenic 20.0%
!!! AAGATAGAGAATATTTTCAA+TGG - chr4_2:30721216-30721235 None:intergenic 20.0%
!! ATTGAAAATATTCTCTATCT+TGG + chr4_2:30721215-30721234 Msa0597770:CDS 20.0%
!!! ATATTCTTTGTTGTAAATCT+CGG - chr4_2:30721258-30721277 None:intergenic 20.0%
!! TTAAAGAATGTATATGCTAT+TGG + chr4_2:30721398-30721417 Msa0597770:CDS 20.0%
!! GATAGAGAATATTTTCAATG+GGG - chr4_2:30721214-30721233 None:intergenic 25.0%
!! GATAGAGAATATTTTCAATG+GGG - chr4_2:30721214-30721233 None:intergenic 25.0%
!!! TTATGGTAGTTTTAGAGACA+AGG + chr4_2:30720504-30720523 Msa0597770:CDS 30.0%
!!! TTAGAGACAAGGTTTTGATT+AGG + chr4_2:30720515-30720534 Msa0597770:CDS 30.0%
!!! ACAAGGTTTTGATTAGGATA+TGG + chr4_2:30720521-30720540 Msa0597770:CDS 30.0%
! TGTTTGAAGTGATTAATTCG+AGG + chr4_2:30720587-30720606 Msa0597770:CDS 30.0%
! GTTTGAAGTGATTAATTCGA+GGG + chr4_2:30720588-30720607 Msa0597770:CDS 30.0%
!! CAGATGAGATTTTGAAAGAT+GGG + chr4_2:30720692-30720711 Msa0597770:CDS 30.0%
!!! AGATGGGTTTTGTTTGAATA+TGG + chr4_2:30720708-30720727 Msa0597770:CDS 30.0%
TAATTTCTTCAAACACCTCA+CGG - chr4_2:30720831-30720850 None:intergenic 30.0%
AGTTCCTGTCATTATTTCAT+TGG + chr4_2:30720876-30720895 Msa0597770:CDS 30.0%
TTAGCCAATGAAATAATGAC+AGG - chr4_2:30720883-30720902 None:intergenic 30.0%
! TGTCATTATTTCATTGGCTA+AGG + chr4_2:30720882-30720901 Msa0597770:CDS 30.0%
! GTCATTATTTCATTGGCTAA+GGG + chr4_2:30720883-30720902 Msa0597770:CDS 30.0%
! TCATTAGTTGCTTTATGTTG+TGG + chr4_2:30720994-30721013 Msa0597770:intron 30.0%
AGAATCAGAAACTAAAGTCA+AGG - chr4_2:30721156-30721175 None:intergenic 30.0%
GAAAATATTCTCTATCTTGG+AGG + chr4_2:30721218-30721237 Msa0597770:CDS 30.0%
! AACCATTGGCAAAGTTTTTA+AGG + chr4_2:30721315-30721334 Msa0597770:CDS 30.0%
TCTTGTTACTCATGAAGTTA+TGG + chr4_2:30721370-30721389 Msa0597770:CDS 30.0%
CTTGTTACTCATGAAGTTAT+GGG + chr4_2:30721371-30721390 Msa0597770:CDS 30.0%
!!! TTATGGTAGTTTTAGAGACA+AGG + chr4_2:30720504-30720523 Msa0597770:CDS 30.0%
!!! TTAGAGACAAGGTTTTGATT+AGG + chr4_2:30720515-30720534 Msa0597770:CDS 30.0%
!!! ACAAGGTTTTGATTAGGATA+TGG + chr4_2:30720521-30720540 Msa0597770:CDS 30.0%
! TGTTTGAAGTGATTAATTCG+AGG + chr4_2:30720587-30720606 Msa0597770:CDS 30.0%
! GTTTGAAGTGATTAATTCGA+GGG + chr4_2:30720588-30720607 Msa0597770:CDS 30.0%
!! CAGATGAGATTTTGAAAGAT+GGG + chr4_2:30720692-30720711 Msa0597770:CDS 30.0%
!!! AGATGGGTTTTGTTTGAATA+TGG + chr4_2:30720708-30720727 Msa0597770:CDS 30.0%
TAATTTCTTCAAACACCTCA+CGG - chr4_2:30720831-30720850 None:intergenic 30.0%
AGTTCCTGTCATTATTTCAT+TGG + chr4_2:30720876-30720895 Msa0597770:CDS 30.0%
TTAGCCAATGAAATAATGAC+AGG - chr4_2:30720883-30720902 None:intergenic 30.0%
! TGTCATTATTTCATTGGCTA+AGG + chr4_2:30720882-30720901 Msa0597770:CDS 30.0%
! GTCATTATTTCATTGGCTAA+GGG + chr4_2:30720883-30720902 Msa0597770:CDS 30.0%
! TCATTAGTTGCTTTATGTTG+TGG + chr4_2:30720994-30721013 Msa0597770:intron 30.0%
AGAATCAGAAACTAAAGTCA+AGG - chr4_2:30721156-30721175 None:intergenic 30.0%
GAAAATATTCTCTATCTTGG+AGG + chr4_2:30721218-30721237 Msa0597770:CDS 30.0%
! AACCATTGGCAAAGTTTTTA+AGG + chr4_2:30721315-30721334 Msa0597770:CDS 30.0%
TCTTGTTACTCATGAAGTTA+TGG + chr4_2:30721370-30721389 Msa0597770:CDS 30.0%
CTTGTTACTCATGAAGTTAT+GGG + chr4_2:30721371-30721390 Msa0597770:CDS 30.0%
AACCATCATGGATACTCAAA+TGG + chr4_2:30720334-30720353 Msa0597770:CDS 35.0%
AACCATTTGAGTATCCATGA+TGG - chr4_2:30720339-30720358 None:intergenic 35.0%
GGTTCTCTTCAAAGTGTAAA+TGG + chr4_2:30720355-30720374 Msa0597770:CDS 35.0%
ATCATCAACTTTCCCCATTA+GGG - chr4_2:30720413-30720432 None:intergenic 35.0%
CCAACACAAACTATTCTCAA+TGG - chr4_2:30720439-30720458 None:intergenic 35.0%
! CCATTGAGAATAGTTTGTGT+TGG + chr4_2:30720436-30720455 Msa0597770:CDS 35.0%
! TTGAGAATAGTTTGTGTTGG+AGG + chr4_2:30720439-30720458 Msa0597770:CDS 35.0%
GTTTACAGCTATGTTACAAG+AGG + chr4_2:30720480-30720499 Msa0597770:CDS 35.0%
! TGCGTATTTGAAATATGTCG+AGG + chr4_2:30720642-30720661 Msa0597770:CDS 35.0%
! GCGTATTTGAAATATGTCGA+GGG + chr4_2:30720643-30720662 Msa0597770:CDS 35.0%
! CGTATTTGAAATATGTCGAG+GGG + chr4_2:30720644-30720663 Msa0597770:CDS 35.0%
!! GCAGATGAGATTTTGAAAGA+TGG + chr4_2:30720691-30720710 Msa0597770:CDS 35.0%
AATTCGTCACAACCTTCAAA+GGG - chr4_2:30720750-30720769 None:intergenic 35.0%
AAATTCGTCACAACCTTCAA+AGG - chr4_2:30720751-30720770 None:intergenic 35.0%
GATGCTGACATTGTGATTAA+CGG + chr4_2:30720787-30720806 Msa0597770:CDS 35.0%
AATTTCTTCAAACACCTCAC+GGG - chr4_2:30720830-30720849 None:intergenic 35.0%
AGAAACTAAAGTCAAGGCAA+GGG - chr4_2:30721150-30721169 None:intergenic 35.0%
TTGATATTATGCTTTGCAGC+TGG + chr4_2:30721185-30721204 Msa0597770:intron 35.0%
! TTCTTTGTTGTAAATCTCGG+AGG - chr4_2:30721255-30721274 None:intergenic 35.0%
TATGCAAATGCTCGAATATG+TGG + chr4_2:30721275-30721294 Msa0597770:CDS 35.0%
GAATATGTGGAGCAGAAAAA+TGG + chr4_2:30721288-30721307 Msa0597770:CDS 35.0%
AGAAAAATGGAGGAAACCAT+TGG + chr4_2:30721301-30721320 Msa0597770:CDS 35.0%
TGCCTTAAAAACTTTGCCAA+TGG - chr4_2:30721320-30721339 None:intergenic 35.0%
!!! ATTGGCAAAGTTTTTAAGGC+AGG + chr4_2:30721319-30721338 Msa0597770:CDS 35.0%
AATGTATATGCTATTGGAGC+AGG + chr4_2:30721404-30721423 Msa0597770:CDS 35.0%
AACCATCATGGATACTCAAA+TGG + chr4_2:30720334-30720353 Msa0597770:CDS 35.0%
AACCATTTGAGTATCCATGA+TGG - chr4_2:30720339-30720358 None:intergenic 35.0%
GGTTCTCTTCAAAGTGTAAA+TGG + chr4_2:30720355-30720374 Msa0597770:CDS 35.0%
ATCATCAACTTTCCCCATTA+GGG - chr4_2:30720413-30720432 None:intergenic 35.0%
CCAACACAAACTATTCTCAA+TGG - chr4_2:30720439-30720458 None:intergenic 35.0%
! CCATTGAGAATAGTTTGTGT+TGG + chr4_2:30720436-30720455 Msa0597770:CDS 35.0%
! TTGAGAATAGTTTGTGTTGG+AGG + chr4_2:30720439-30720458 Msa0597770:CDS 35.0%
GTTTACAGCTATGTTACAAG+AGG + chr4_2:30720480-30720499 Msa0597770:CDS 35.0%
! TGCGTATTTGAAATATGTCG+AGG + chr4_2:30720642-30720661 Msa0597770:CDS 35.0%
! GCGTATTTGAAATATGTCGA+GGG + chr4_2:30720643-30720662 Msa0597770:CDS 35.0%
! CGTATTTGAAATATGTCGAG+GGG + chr4_2:30720644-30720663 Msa0597770:CDS 35.0%
!! GCAGATGAGATTTTGAAAGA+TGG + chr4_2:30720691-30720710 Msa0597770:CDS 35.0%
AATTCGTCACAACCTTCAAA+GGG - chr4_2:30720750-30720769 None:intergenic 35.0%
AAATTCGTCACAACCTTCAA+AGG - chr4_2:30720751-30720770 None:intergenic 35.0%
GATGCTGACATTGTGATTAA+CGG + chr4_2:30720787-30720806 Msa0597770:CDS 35.0%
AATTTCTTCAAACACCTCAC+GGG - chr4_2:30720830-30720849 None:intergenic 35.0%
AGAAACTAAAGTCAAGGCAA+GGG - chr4_2:30721150-30721169 None:intergenic 35.0%
TTGATATTATGCTTTGCAGC+TGG + chr4_2:30721185-30721204 Msa0597770:intron 35.0%
! TTCTTTGTTGTAAATCTCGG+AGG - chr4_2:30721255-30721274 None:intergenic 35.0%
TATGCAAATGCTCGAATATG+TGG + chr4_2:30721275-30721294 Msa0597770:CDS 35.0%
GAATATGTGGAGCAGAAAAA+TGG + chr4_2:30721288-30721307 Msa0597770:CDS 35.0%
AGAAAAATGGAGGAAACCAT+TGG + chr4_2:30721301-30721320 Msa0597770:CDS 35.0%
TGCCTTAAAAACTTTGCCAA+TGG - chr4_2:30721320-30721339 None:intergenic 35.0%
!!! ATTGGCAAAGTTTTTAAGGC+AGG + chr4_2:30721319-30721338 Msa0597770:CDS 35.0%
AATGTATATGCTATTGGAGC+AGG + chr4_2:30721404-30721423 Msa0597770:CDS 35.0%
TGATGAGCTTAGAACCCTAA+TGG + chr4_2:30720396-30720415 Msa0597770:CDS 40.0%
GATGAGCTTAGAACCCTAAT+GGG + chr4_2:30720397-30720416 Msa0597770:CDS 40.0%
ATGAGCTTAGAACCCTAATG+GGG + chr4_2:30720398-30720417 Msa0597770:CDS 40.0%
CATCATCAACTTTCCCCATT+AGG - chr4_2:30720414-30720433 None:intergenic 40.0%
! AGAATAGTTTGTGTTGGAGG+TGG + chr4_2:30720442-30720461 Msa0597770:CDS 40.0%
GCTATGTTACAAGAGGCTTA+TGG + chr4_2:30720487-30720506 Msa0597770:CDS 40.0%
ATTAGGATATGGAGAAGACC+AGG + chr4_2:30720532-30720551 Msa0597770:CDS 40.0%
TGAAGTGATTAATTCGAGGG+AGG + chr4_2:30720591-30720610 Msa0597770:CDS 40.0%
! ATGTGTTGAGGAGGTTGATT+AGG + chr4_2:30720614-30720633 Msa0597770:CDS 40.0%
AAATATGTCGAGGGGAGATT+AGG + chr4_2:30720652-30720671 Msa0597770:CDS 40.0%
GAATTTGCAGGAAGCTGTAT+GGG + chr4_2:30720765-30720784 Msa0597770:CDS 40.0%
! TATTTCATTGGCTAAGGGTG+TGG + chr4_2:30720888-30720907 Msa0597770:CDS 40.0%
ACATGCATTCAAATGCTCGA+GGG - chr4_2:30721077-30721096 None:intergenic 40.0%
TACATGCATTCAAATGCTCG+AGG - chr4_2:30721078-30721097 None:intergenic 40.0%
CAGAAACTAAAGTCAAGGCA+AGG - chr4_2:30721151-30721170 None:intergenic 40.0%
TAAATCTCGGAGGCAATGTT+AGG - chr4_2:30721245-30721264 None:intergenic 40.0%
TATGTGGAGCAGAAAAATGG+AGG + chr4_2:30721291-30721310 Msa0597770:CDS 40.0%
GTTACTCATGAAGTTATGGG+TGG + chr4_2:30721374-30721393 Msa0597770:CDS 40.0%
TGATGAGCTTAGAACCCTAA+TGG + chr4_2:30720396-30720415 Msa0597770:CDS 40.0%
GATGAGCTTAGAACCCTAAT+GGG + chr4_2:30720397-30720416 Msa0597770:CDS 40.0%
ATGAGCTTAGAACCCTAATG+GGG + chr4_2:30720398-30720417 Msa0597770:CDS 40.0%
CATCATCAACTTTCCCCATT+AGG - chr4_2:30720414-30720433 None:intergenic 40.0%
! AGAATAGTTTGTGTTGGAGG+TGG + chr4_2:30720442-30720461 Msa0597770:CDS 40.0%
GCTATGTTACAAGAGGCTTA+TGG + chr4_2:30720487-30720506 Msa0597770:CDS 40.0%
ATTAGGATATGGAGAAGACC+AGG + chr4_2:30720532-30720551 Msa0597770:CDS 40.0%
TGAAGTGATTAATTCGAGGG+AGG + chr4_2:30720591-30720610 Msa0597770:CDS 40.0%
! ATGTGTTGAGGAGGTTGATT+AGG + chr4_2:30720614-30720633 Msa0597770:CDS 40.0%
AAATATGTCGAGGGGAGATT+AGG + chr4_2:30720652-30720671 Msa0597770:CDS 40.0%
GAATTTGCAGGAAGCTGTAT+GGG + chr4_2:30720765-30720784 Msa0597770:CDS 40.0%
! TATTTCATTGGCTAAGGGTG+TGG + chr4_2:30720888-30720907 Msa0597770:CDS 40.0%
ACATGCATTCAAATGCTCGA+GGG - chr4_2:30721077-30721096 None:intergenic 40.0%
TACATGCATTCAAATGCTCG+AGG - chr4_2:30721078-30721097 None:intergenic 40.0%
CAGAAACTAAAGTCAAGGCA+AGG - chr4_2:30721151-30721170 None:intergenic 40.0%
TAAATCTCGGAGGCAATGTT+AGG - chr4_2:30721245-30721264 None:intergenic 40.0%
TATGTGGAGCAGAAAAATGG+AGG + chr4_2:30721291-30721310 Msa0597770:CDS 40.0%
GTTACTCATGAAGTTATGGG+TGG + chr4_2:30721374-30721393 Msa0597770:CDS 40.0%
! AAGAGCTGTTGATAGAGCCA+CGG + chr4_2:30720555-30720574 Msa0597770:CDS 45.0%
TTCAAACAAATGCGTAGCCG+TGG - chr4_2:30720575-30720594 None:intergenic 45.0%
TACACCTGTTTGCCCTTTGA+AGG + chr4_2:30720735-30720754 Msa0597770:CDS 45.0%
ACAACCTTCAAAGGGCAAAC+AGG - chr4_2:30720742-30720761 None:intergenic 45.0%
GAAGGTTGTGACGAATTTGC+AGG + chr4_2:30720753-30720772 Msa0597770:CDS 45.0%
CGAATTTGCAGGAAGCTGTA+TGG + chr4_2:30720764-30720783 Msa0597770:CDS 45.0%
! AAGAGCTGTTGATAGAGCCA+CGG + chr4_2:30720555-30720574 Msa0597770:CDS 45.0%
TTCAAACAAATGCGTAGCCG+TGG - chr4_2:30720575-30720594 None:intergenic 45.0%
TACACCTGTTTGCCCTTTGA+AGG + chr4_2:30720735-30720754 Msa0597770:CDS 45.0%
ACAACCTTCAAAGGGCAAAC+AGG - chr4_2:30720742-30720761 None:intergenic 45.0%
GAAGGTTGTGACGAATTTGC+AGG + chr4_2:30720753-30720772 Msa0597770:CDS 45.0%
CGAATTTGCAGGAAGCTGTA+TGG + chr4_2:30720764-30720783 Msa0597770:CDS 45.0%
TTTGTGTTGGAGGTGGTGCT+TGG + chr4_2:30720449-30720468 Msa0597770:CDS 50.0%
TTGTGTTGGAGGTGGTGCTT+GGG + chr4_2:30720450-30720469 Msa0597770:CDS 50.0%
GCTCTATCAACAGCTCTTCC+TGG - chr4_2:30720553-30720572 None:intergenic 50.0%
ATTCGAGGGAGGATGTGTTG+AGG + chr4_2:30720602-30720621 Msa0597770:CDS 50.0%
TCGAGGGGAGATTAGGTGAT+AGG + chr4_2:30720659-30720678 Msa0597770:CDS 50.0%
CGAGGGGAGATTAGGTGATA+GGG + chr4_2:30720660-30720679 Msa0597770:CDS 50.0%
! TTCATTGGCTAAGGGTGTGG+AGG + chr4_2:30720891-30720910 Msa0597770:CDS 50.0%
! TAAGGGTGTGGAGGCTGAAT+TGG + chr4_2:30720900-30720919 Msa0597770:CDS 50.0%
! AGCGTAGGTGTTATGATCCG+CGG - chr4_2:30720934-30720953 None:intergenic 50.0%
GCTCGACTGATCATTAGCGT+AGG - chr4_2:30720949-30720968 None:intergenic 50.0%
GCAGGCGCACTTTATAGTGT+GGG + chr4_2:30721337-30721356 Msa0597770:CDS 50.0%
TTTGTGTTGGAGGTGGTGCT+TGG + chr4_2:30720449-30720468 Msa0597770:CDS 50.0%
TTGTGTTGGAGGTGGTGCTT+GGG + chr4_2:30720450-30720469 Msa0597770:CDS 50.0%
GCTCTATCAACAGCTCTTCC+TGG - chr4_2:30720553-30720572 None:intergenic 50.0%
ATTCGAGGGAGGATGTGTTG+AGG + chr4_2:30720602-30720621 Msa0597770:CDS 50.0%
TCGAGGGGAGATTAGGTGAT+AGG + chr4_2:30720659-30720678 Msa0597770:CDS 50.0%
CGAGGGGAGATTAGGTGATA+GGG + chr4_2:30720660-30720679 Msa0597770:CDS 50.0%
! TTCATTGGCTAAGGGTGTGG+AGG + chr4_2:30720891-30720910 Msa0597770:CDS 50.0%
! TAAGGGTGTGGAGGCTGAAT+TGG + chr4_2:30720900-30720919 Msa0597770:CDS 50.0%
! AGCGTAGGTGTTATGATCCG+CGG - chr4_2:30720934-30720953 None:intergenic 50.0%
GCTCGACTGATCATTAGCGT+AGG - chr4_2:30720949-30720968 None:intergenic 50.0%
GCAGGCGCACTTTATAGTGT+GGG + chr4_2:30721337-30721356 Msa0597770:CDS 50.0%
TGTGTTGGAGGTGGTGCTTG+GGG + chr4_2:30720451-30720470 Msa0597770:CDS 55.0%
ACCTCACGGGTTTCTGTCGA+TGG - chr4_2:30720817-30720836 None:intergenic 55.0%
! CTGAATTGGTTCCTGAGCCG+CGG + chr4_2:30720914-30720933 Msa0597770:CDS 55.0%
GGCAGGCGCACTTTATAGTG+TGG + chr4_2:30721336-30721355 Msa0597770:CDS 55.0%
TGTGTTGGAGGTGGTGCTTG+GGG + chr4_2:30720451-30720470 Msa0597770:CDS 55.0%
ACCTCACGGGTTTCTGTCGA+TGG - chr4_2:30720817-30720836 None:intergenic 55.0%
! CTGAATTGGTTCCTGAGCCG+CGG + chr4_2:30720914-30720933 Msa0597770:CDS 55.0%
GGCAGGCGCACTTTATAGTG+TGG + chr4_2:30721336-30721355 Msa0597770:CDS 55.0%
CGAGGGAGGATGTGTTGAGG+AGG + chr4_2:30720605-30720624 Msa0597770:CDS 60.0%
GCCATCGACAGAAACCCGTG+AGG + chr4_2:30720813-30720832 Msa0597770:CDS 60.0%
! GGTGTTATGATCCGCGGCTC+AGG - chr4_2:30720928-30720947 None:intergenic 60.0%
CGAGGGAGGATGTGTTGAGG+AGG + chr4_2:30720605-30720624 Msa0597770:CDS 60.0%
GCCATCGACAGAAACCCGTG+AGG + chr4_2:30720813-30720832 Msa0597770:CDS 60.0%
! GGTGTTATGATCCGCGGCTC+AGG - chr4_2:30720928-30720947 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 30720331 30721436 30720331 ID=Msa0597770;Name=Msa0597770
chr4_2 mRNA 30720331 30721436 30720331 ID=Msa0597770-mRNA-1;Parent=Msa0597770;Name=Msa0597770-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|1|1|1|2|0|290
chr4_2 exon 30720331 30720970 30720331 ID=Msa0597770-mRNA-1:exon:7735;Parent=Msa0597770-mRNA-1
chr4_2 exon 30721204 30721436 30721204 ID=Msa0597770-mRNA-1:exon:7736;Parent=Msa0597770-mRNA-1
chr4_2 CDS 30720331 30720970 30720331 ID=Msa0597770-mRNA-1:cds;Parent=Msa0597770-mRNA-1
chr4_2 CDS 30721204 30721436 30721204 ID=Msa0597770-mRNA-1:cds;Parent=Msa0597770-mRNA-1
Gene Sequence

>Msa0597770

ATGAACCATCATGGATACTCAAATGGTTCTCTTCAAAGTGTAAATGGTAATTTTGAAGAGAAGCTTGATGAGCTTAGAACCCTAATGGGGAAAGTTGATGATGATCCATTGAGAATAGTTTGTGTTGGAGGTGGTGCTTGGGGTAGTGTGTTTACAGCTATGTTACAAGAGGCTTATGGTAGTTTTAGAGACAAGGTTTTGATTAGGATATGGAGAAGACCAGGAAGAGCTGTTGATAGAGCCACGGCTACGCATTTGTTTGAAGTGATTAATTCGAGGGAGGATGTGTTGAGGAGGTTGATTAGGCGTTGTGCGTATTTGAAATATGTCGAGGGGAGATTAGGTGATAGGGTTCTTCATGCAGATGAGATTTTGAAAGATGGGTTTTGTTTGAATATGGTTGATACACCTGTTTGCCCTTTGAAGGTTGTGACGAATTTGCAGGAAGCTGTATGGGATGCTGACATTGTGATTAACGGCTTGCCATCGACAGAAACCCGTGAGGTGTTTGAAGAAATTAGTAAGTATTGGAAAGAGAGAATTACAGTTCCTGTCATTATTTCATTGGCTAAGGGTGTGGAGGCTGAATTGGTTCCTGAGCCGCGGATCATAACACCTACGCTAATGATCAGTCGAGCAACTGGAGTCCCCATTGAAAATATTCTCTATCTTGGAGGTCCTAACATTGCCTCCGAGATTTACAACAAAGAATATGCAAATGCTCGAATATGTGGAGCAGAAAAATGGAGGAAACCATTGGCAAAGTTTTTAAGGCAGGCGCACTTTATAGTGTGGGATAATGTTGATCTTGTTACTCATGAAGTTATGGGTGGATTAAAGAATGTATATGCTATTGGAGCAGGTAAAATATAG

Protein sequence

>Msa0597770

MNHHGYSNGSLQSVNGNFEEKLDELRTLMGKVDDDPLRIVCVGGGAWGSVFTAMLQEAYGSFRDKVLIRIWRRPGRAVDRATATHLFEVINSREDVLRRLIRRCAYLKYVEGRLGDRVLHADEILKDGFCLNMVDTPVCPLKVVTNLQEAVWDADIVINGLPSTETREVFEEISKYWKERITVPVIISLAKGVEAELVPEPRIITPTLMISRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRQAHFIVWDNVDLVTHEVMGGLKNVYAIGAGKI*