AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0381090


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0381090 MtrunA17_Chr3g0134761 95.601 341 15 0 1 341 1 341 0.0 657
Msa0381090 MtrunA17_Chr1g0152561 76.737 331 70 4 5 334 16 340 3.71e-178 497
Msa0381090 MtrunA17_Chr2g0290151 49.020 306 140 3 44 337 156 457 2.62e-83 259
Msa0381090 MtrunA17_Chr1g0183781 49.477 287 140 2 51 337 440 721 5.19e-80 258
Msa0381090 MtrunA17_Chr3g0106931 51.748 286 133 2 51 336 553 833 1.96e-77 253
Msa0381090 MtrunA17_Chr7g0261371 46.809 282 145 2 51 332 514 790 1.90e-70 234
Msa0381090 MtrunA17_Chr4g0044411 45.357 280 149 1 51 330 373 648 1.58e-67 223
Msa0381090 MtrunA17_Chr4g0031431 43.262 282 156 1 51 332 353 630 2.00e-61 207
Msa0381090 MtrunA17_Chr7g0248251 40.794 277 160 1 54 330 370 642 2.52e-61 207
Msa0381090 MtrunA17_Chr1g0199321 45.714 280 148 1 51 330 345 620 1.65e-60 204
Msa0381090 MtrunA17_Chr7g0237931 41.581 291 155 4 43 328 325 605 1.28e-58 199
Msa0381090 MtrunA17_Chr5g0437411 39.655 290 162 6 54 334 408 693 7.00e-47 168
Msa0381090 MtrunA17_Chr5g0429231 35.379 277 170 5 58 329 41 313 6.12e-38 138
Msa0381090 MtrunA17_Chr7g0275081 36.170 282 168 7 53 326 171 448 8.79e-35 132
Msa0381090 MtrunA17_Chr2g0284461 37.329 292 169 9 54 339 399 682 1.31e-33 131
Msa0381090 MtrunA17_Chr7g0234671 32.616 279 183 4 55 330 175 451 2.24e-31 122
Msa0381090 MtrunA17_Chr5g0435041 33.803 284 177 6 51 329 20 297 4.96e-29 115
Msa0381090 MtrunA17_Chr1g0189811 34.375 288 183 5 51 334 157 442 8.84e-27 110
Msa0381090 MtrunA17_Chr3g0118001 26.882 279 195 3 54 329 214 486 8.75e-26 107
Msa0381090 MtrunA17_Chr6g0449461 30.479 292 184 8 52 333 3 285 2.92e-25 103
Msa0381090 MtrunA17_Chr3g0111451 34.708 291 176 7 51 333 41 325 1.77e-24 102
Msa0381090 MtrunA17_Chr8g0377151 31.985 272 178 6 72 338 449 718 6.37e-24 102
Msa0381090 MtrunA17_Chr4g0013091 30.690 290 185 8 50 330 416 698 1.11e-20 93.2
Msa0381090 MtrunA17_Chr4g0059201 29.412 306 198 10 42 339 417 712 7.16e-20 90.9
Msa0381090 MtrunA17_Chr6g0451581 25.822 213 153 2 116 325 299 509 1.17e-17 84.0
Msa0381090 MtrunA17_Chr1g0149941 27.931 290 190 9 53 329 175 458 1.74e-17 83.6
Msa0381090 MtrunA17_Chr3g0122721 28.947 266 181 6 72 332 448 710 2.33e-17 83.2
Msa0381090 MtrunA17_Chr3g0137061 27.491 291 193 7 51 329 110 394 4.72e-17 82.0
Msa0381090 MtrunA17_Chr3g0117851 27.586 290 160 8 47 330 378 623 7.25e-16 78.6
Msa0381090 MtrunA17_Chr4g0048811 30.882 204 134 6 129 329 121 320 1.85e-15 76.3
Msa0381090 MtrunA17_Chr1g0199031 39.496 119 55 1 132 250 18 119 2.40e-15 72.0
Msa0381090 MtrunA17_Chr8g0350681 28.251 223 146 7 91 309 238 450 8.49e-15 75.5
Msa0381090 MtrunA17_Chr2g0280671 29.008 262 166 9 75 329 131 379 2.67e-13 70.1
Msa0381090 MtrunA17_Chr7g0259851 25.214 234 163 3 58 291 276 497 3.56e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0381090 AT3G01400.1 73.824 340 78 7 5 341 21 352 1.13e-170 479
Msa0381090 AT5G58680.1 69.277 332 91 6 4 332 18 341 1.25e-158 448
Msa0381090 AT4G16490.1 50.505 297 141 2 38 332 172 464 1.10e-83 261
Msa0381090 AT2G23140.3 45.181 332 169 4 13 336 308 634 7.91e-81 258
Msa0381090 AT2G23140.5 45.181 332 169 4 13 336 308 634 7.91e-81 258
Msa0381090 AT2G23140.2 45.181 332 169 4 13 336 497 823 3.63e-79 258
Msa0381090 AT2G23140.4 45.181 332 169 4 13 336 497 823 3.63e-79 258
Msa0381090 AT2G23140.1 45.181 332 169 4 13 336 500 826 4.17e-79 258
Msa0381090 AT5G67340.1 48.252 286 142 3 51 335 423 703 9.41e-74 241
Msa0381090 AT5G67340.2 48.252 286 142 3 51 335 423 703 9.41e-74 241
Msa0381090 AT3G54790.2 48.057 283 141 3 53 334 440 717 3.77e-70 232
Msa0381090 AT3G54790.3 48.057 283 141 3 53 334 476 753 1.35e-69 231
Msa0381090 AT3G54790.1 48.057 283 141 3 53 334 476 753 1.35e-69 231
Msa0381090 AT1G23030.1 45.035 282 150 2 50 330 332 609 1.08e-68 226
Msa0381090 AT1G71020.2 45.907 281 148 2 51 330 195 472 1.21e-68 223
Msa0381090 AT1G71020.1 45.907 281 148 2 51 330 343 620 1.54e-67 223
Msa0381090 AT3G54850.1 47.518 282 142 3 50 330 346 622 1.11e-62 211
Msa0381090 AT3G46510.1 42.391 276 155 1 51 326 354 625 1.67e-61 208
Msa0381090 AT2G28830.1 40.942 276 159 2 51 325 285 557 7.54e-59 199
Msa0381090 AT5G42340.1 39.310 290 172 1 39 328 369 654 3.93e-52 182
Msa0381090 AT3G07360.5 33.681 288 181 8 49 330 34 317 2.66e-35 131
Msa0381090 AT3G07360.3 33.681 288 181 8 49 330 34 317 2.66e-35 131
Msa0381090 AT3G07360.9 33.681 288 181 8 49 330 34 317 2.66e-35 131
Msa0381090 AT3G07360.6 33.681 288 181 8 49 330 34 317 2.66e-35 131
Msa0381090 AT3G07360.2 33.681 288 181 8 49 330 34 317 2.66e-35 131
Msa0381090 AT3G07360.8 33.681 288 181 8 49 330 34 317 2.66e-35 131
Msa0381090 AT3G07360.10 33.681 288 181 8 49 330 34 317 2.66e-35 131
Msa0381090 AT3G07360.7 33.681 288 181 8 49 330 34 317 2.66e-35 131
Msa0381090 AT3G07360.4 33.681 288 181 8 49 330 34 317 2.66e-35 131
Msa0381090 AT3G07360.1 33.681 288 181 8 49 330 169 452 3.61e-34 130
Msa0381090 AT3G03440.1 31.307 329 215 6 17 339 32 355 1.97e-33 128
Msa0381090 AT4G12710.1 33.557 298 184 8 50 337 46 339 1.49e-30 120
Msa0381090 AT1G29340.1 34.568 324 196 9 24 340 381 695 3.55e-27 112
Msa0381090 AT1G67530.2 31.321 265 176 5 72 332 447 709 3.10e-23 101
Msa0381090 AT1G67530.1 31.321 265 176 5 72 332 447 709 3.10e-23 101
Msa0381090 AT1G67530.4 31.321 265 176 5 72 332 447 709 3.10e-23 101
Msa0381090 AT5G18320.1 26.351 296 175 7 60 330 171 448 2.74e-22 97.8
Msa0381090 AT5G62560.1 28.159 277 188 6 58 329 243 513 4.02e-22 97.8
Msa0381090 AT5G40140.1 27.402 281 192 5 54 329 233 506 2.67e-21 95.1
Msa0381090 AT1G24330.1 29.924 264 178 5 73 332 448 708 4.11e-21 95.1
Msa0381090 AT1G24330.2 29.924 264 178 5 73 332 448 708 4.11e-21 95.1
Msa0381090 AT5G01830.1 30.686 277 173 8 62 330 380 645 7.31e-19 88.2
Msa0381090 AT1G27910.1 28.625 269 187 5 72 337 445 711 7.32e-19 88.2
Msa0381090 AT4G31890.3 29.180 305 184 11 49 329 132 428 2.57e-18 86.3
Msa0381090 AT4G31890.2 29.180 305 184 11 49 329 132 428 2.57e-18 86.3
Msa0381090 AT4G31890.1 29.180 305 184 11 49 329 132 428 2.57e-18 86.3
Msa0381090 AT5G65200.1 25.352 284 195 5 58 330 233 510 3.58e-17 82.8
Msa0381090 AT2G25130.1 27.985 268 179 7 72 329 132 395 1.09e-16 81.3
Msa0381090 AT4G21350.1 33.645 214 132 5 76 287 121 326 3.46e-16 79.3
Msa0381090 AT5G14510.1 30.108 279 180 8 58 329 9 279 4.49e-16 78.6
Msa0381090 AT3G47820.1 29.515 227 150 5 111 329 263 487 5.59e-16 79.3
Msa0381090 AT1G10560.1 29.258 229 148 7 68 287 407 630 2.52e-13 71.2
Msa0381090 AT5G13060.1 24.088 274 170 4 54 293 272 541 4.38e-13 70.9
Msa0381090 AT3G20170.1 27.530 247 166 7 84 328 144 379 1.46e-12 68.9
Msa0381090 AT1G77460.2 29.070 258 152 9 87 331 467 706 2.39e-12 68.9
Msa0381090 AT1G77460.3 29.070 258 152 9 87 331 467 706 2.39e-12 68.9
Msa0381090 AT1G77460.4 29.070 258 152 9 87 331 467 706 2.39e-12 68.9
Msa0381090 AT1G77460.1 29.070 258 152 9 87 331 467 706 2.39e-12 68.9
Msa0381090 AT3G60350.1 31.875 160 98 3 89 245 599 750 1.71e-11 65.9
Msa0381090 AT3G60350.2 31.875 160 98 3 89 245 599 750 1.71e-11 65.9
Msa0381090 AT5G18330.1 29.947 187 117 4 47 221 142 326 2.87e-11 64.7

Find 100 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGCCTTTGGTTGAATTAA+TGG 0.174563 3_1:+83066715 Msa0381090:CDS
TGAACGTGGAAAAGAGATTT+TGG 0.221914 3_1:-83065951 None:intergenic
CCGGCGACGGTGATGATAAA+AGG 0.253012 3_1:-83066349 None:intergenic
AAAGAGATTATCACTTCTTC+TGG 0.285237 3_1:+83066440 Msa0381090:CDS
AATGAGAAGGCGTTGGATTC+TGG 0.288615 3_1:-83066150 None:intergenic
TAACAGCGATACATAGTTAA+TGG 0.292630 3_1:+83069063 Msa0381090:three_prime_UTR
GGTTGAATTAATGGCGGATT+TGG 0.298923 3_1:+83066724 Msa0381090:CDS
TTGGTGGAGATTGTGGAGGT+TGG 0.310557 3_1:+83066845 Msa0381090:CDS
AAGGCGTTGGATTCTGGTTT+CGG 0.334331 3_1:-83066144 None:intergenic
TGGAAGATGTGGAGCAATTC+CGG 0.336516 3_1:+83066574 Msa0381090:CDS
GAAGAGAATAAAGGAGCAAT+TGG 0.355932 3_1:+83066554 Msa0381090:CDS
TGAAGGTGCTATTCCTCCTT+TGG 0.356535 3_1:+83066952 Msa0381090:CDS
TTGTAAACTAACCTTGTCTT+TGG 0.375974 3_1:-83067005 None:intergenic
CAAGTATATATGTTGATTAG+AGG 0.381732 3_1:-83066000 None:intergenic
TGGTGAGCACAAAGGATATC+TGG 0.396238 3_1:-83069024 None:intergenic
CGGTTTAATAGCGCCGGCTT+TGG 0.400784 3_1:-83066318 None:intergenic
ATCATCACCGTCGCCGGGGA+TGG 0.404318 3_1:+83066355 Msa0381090:CDS
ATGTATCGCTGTTAGATTGT+TGG 0.419071 3_1:-83069054 None:intergenic
GTCTTTGGCGCGAATGGTAC+CGG 0.420372 3_1:-83066990 None:intergenic
TTCTGGTGCGATTAAACCTA+TGG 0.424118 3_1:+83066457 Msa0381090:CDS
AAAATTAGAGCGGTGAAAGC+TGG 0.424978 3_1:+83066686 Msa0381090:CDS
TGGTGGAGATTGTGGAGGTT+GGG 0.434537 3_1:+83066846 Msa0381090:CDS
GGTGGAGGAAGGAGGGATTC+CGG 0.437700 3_1:+83066820 Msa0381090:CDS
TCGAGAAGGTTCACCAATGC+CGG 0.444467 3_1:-83066593 None:intergenic
TCACAGACAGAAGAGAATAA+AGG 0.451466 3_1:+83066545 Msa0381090:CDS
TTCGGTTGTAGTGGTGAATT+CGG 0.452339 3_1:-83066126 None:intergenic
GGAAGCGAGGACGGCGTTGG+TGG 0.454845 3_1:+83066802 Msa0381090:CDS
TCCGGTGTTGGTGGAGATTG+TGG 0.459535 3_1:+83066838 Msa0381090:CDS
GAGCGTGTTGGTGACGGTTG+TGG 0.461714 3_1:+83066781 Msa0381090:CDS
TTGGTTTCTCTTTCTCAGTC+CGG 0.462112 3_1:+83066971 Msa0381090:CDS
ACAGTGGCATTGCTAGATCT+TGG 0.468286 3_1:-83068970 None:intergenic
AGCGAGGACGGCGTTGGTGG+AGG 0.468776 3_1:+83066805 Msa0381090:CDS
AACCTTGTCTTTGGCGCGAA+TGG 0.469160 3_1:-83066996 None:intergenic
GGAAGGAGGGATTCCGGTGT+TGG 0.479242 3_1:+83066826 Msa0381090:CDS
GAGTTCGTCGGAATAATTAT+CGG 0.485596 3_1:-83066183 None:intergenic
AGCTGGGATAATGAAGCCTT+TGG 0.485681 3_1:+83066703 Msa0381090:CDS
GCTGCATTCTCCTTCGCAGT+TGG 0.494828 3_1:-83066503 None:intergenic
AGACACTAATAGAGCTTCTA+CGG 0.497235 3_1:+83068944 Msa0381090:CDS
GGCGGATTTGGATTCGTACA+TGG 0.497248 3_1:+83066736 Msa0381090:CDS
GGTTTATGTTGATATTTATG+AGG 0.498706 3_1:-83068998 None:intergenic
GTCTTCAAAGCTTTCACCAT+AGG 0.500526 3_1:-83066473 None:intergenic
TATCGTAACGAATTACGTAA+TGG 0.507898 3_1:+83066037 Msa0381090:exon
CGGCGACGGTGATGATAAAA+GGG 0.510450 3_1:-83066348 None:intergenic
ACGGCGTTGGTGGAGGAAGG+AGG 0.512484 3_1:+83066812 Msa0381090:CDS
ATGTGGAGCAATTCCGGCAT+TGG 0.515544 3_1:+83066580 Msa0381090:CDS
AAATTAGAGCGGTGAAAGCT+GGG 0.520695 3_1:+83066687 Msa0381090:CDS
TTGGTGAACCTTCTCGAAAA+CGG 0.521459 3_1:+83066599 Msa0381090:CDS
AATGAAGATCGAGAATCAAC+CGG 0.523414 3_1:-83066211 None:intergenic
CGAGTAATGGTCTGCCGTGA+AGG 0.523826 3_1:+83066935 Msa0381090:CDS
TGTGGAAGCGAGGACGGCGT+TGG 0.525083 3_1:+83066799 Msa0381090:CDS
GACGGTTGTGGAAGCGAGGA+CGG 0.527350 3_1:+83066793 Msa0381090:CDS
CGTCTCAGAATCGCCAAAGC+CGG 0.529146 3_1:+83066305 Msa0381090:CDS
CGGCGTTGGTGGAGGAAGGA+GGG 0.530478 3_1:+83066813 Msa0381090:CDS
AAGGAGGAATAGCACCTTCA+CGG 0.530668 3_1:-83066949 None:intergenic
GCAGTCACTGAAAGCGGAAG+AGG 0.534106 3_1:-83066087 None:intergenic
AAAGGAGCAATTGGAAGATG+TGG 0.538963 3_1:+83066563 Msa0381090:CDS
AGGACGGCGTTGGTGGAGGA+AGG 0.544626 3_1:+83066809 Msa0381090:CDS
AGGAGGGATTCCGGTGTTGG+TGG 0.550459 3_1:+83066829 Msa0381090:CDS
ATGGTGAAAGCTTTGAAGAC+AGG 0.551125 3_1:+83066476 Msa0381090:CDS
TGTGATGAGCGTGTTGGTGA+CGG 0.551202 3_1:+83066775 Msa0381090:CDS
TGCAGTTGAAGATCCATCCC+CGG 0.553429 3_1:-83066368 None:intergenic
TAGTATAAATTATGCTAGCT+TGG 0.553785 3_1:+83069162 Msa0381090:three_prime_UTR
TCCGCCATTAATTCAACCAA+AGG 0.559491 3_1:-83066719 None:intergenic
TGAAGATCCATCCCCGGCGA+CGG 0.564290 3_1:-83066362 None:intergenic
TCGAAAACGGAGGAATCCGC+GGG 0.567283 3_1:+83066612 Msa0381090:CDS
ACAAAGCTTCTTCGTTACAA+AGG 0.569110 3_1:-83069129 None:intergenic
TCCACAATCTCCACCAACAC+CGG 0.569993 3_1:-83066839 None:intergenic
TACCATTCGCGCCAAAGACA+AGG 0.571154 3_1:+83066994 Msa0381090:CDS
AATCAACGGTTTAATAGCGC+CGG 0.573314 3_1:-83066324 None:intergenic
CTCGAAAACGGAGGAATCCG+CGG 0.580066 3_1:+83066611 Msa0381090:CDS
GATTCTGGTTTCGGTTGTAG+TGG 0.584774 3_1:-83066135 None:intergenic
GAGCACAAAGGATATCTGGT+AGG 0.585677 3_1:-83069020 None:intergenic
GGTTGTAGTGGTGAATTCGG+TGG 0.586585 3_1:-83066123 None:intergenic
GCCTTTGGTTGAATTAATGG+CGG 0.592649 3_1:+83066718 Msa0381090:CDS
GAATATGAGTTATCGAGTAA+TGG 0.593225 3_1:+83066922 Msa0381090:CDS
CGGAAGCGCATGTAATGAGA+AGG 0.594684 3_1:-83066163 None:intergenic
GTTAGATTGTTGGAGTACAT+TGG 0.596753 3_1:-83069044 None:intergenic
ACTGTCGCAGTCACTGAAAG+CGG 0.601709 3_1:-83066093 None:intergenic
CGCATGTAATGAGAAGGCGT+TGG 0.608908 3_1:-83066157 None:intergenic
GGTTGGGACGCAGAGACAGA+AGG 0.611749 3_1:+83066862 Msa0381090:CDS
AGCACAAAGGATATCTGGTA+GGG 0.612741 3_1:-83069019 None:intergenic
GTAACGAATTACGTAATGGA+AGG 0.615430 3_1:+83066041 Msa0381090:exon
ATTCCGACGAACTCATTCGC+CGG 0.620409 3_1:+83066192 Msa0381090:CDS
GACAGGCACTCCAACTGCGA+AGG 0.621740 3_1:+83066493 Msa0381090:CDS
GTTGATTAGAGGAAAAGTGA+TGG 0.624006 3_1:-83065989 None:intergenic
GACTGAGAAAGAGAAACCAA+AGG 0.629876 3_1:-83066968 None:intergenic
TATTTATGAGGCACGTACAG+TGG 0.637169 3_1:-83068986 None:intergenic
GATGATAAAAGGGAAATCAA+CGG 0.645026 3_1:-83066338 None:intergenic
GCAGAGACAGAAGGAAATTG+CGG 0.654422 3_1:+83066871 Msa0381090:CDS
CAACCGGCGAATGAGTTCGT+CGG 0.657343 3_1:-83066195 None:intergenic
GAGTACATTGGTGAGCACAA+AGG 0.660268 3_1:-83069032 None:intergenic
TGGTGACGGTTGTGGAAGCG+AGG 0.674684 3_1:+83066789 Msa0381090:CDS
GAGACAGAAGGAAATTGCGG+CGG 0.675465 3_1:+83066874 Msa0381090:CDS
GGTGTTGGTGGAGATTGTGG+AGG 0.676028 3_1:+83066841 Msa0381090:CDS
GAAAGAGAACAAAATTAGAG+CGG 0.684942 3_1:+83066676 Msa0381090:CDS
GGATTTGGATTCGTACATGG+TGG 0.694539 3_1:+83066739 Msa0381090:CDS
AGCGTATGTGATGAGCGTGT+TGG 0.695671 3_1:+83066769 Msa0381090:CDS
TGAGAAAGAGAAACCAAAGG+AGG 0.707414 3_1:-83066965 None:intergenic
TCTATATTATAAAGTGAACG+TGG 0.709631 3_1:-83065965 None:intergenic
GTGAACCTTCTCGAAAACGG+AGG 0.712449 3_1:+83066602 Msa0381090:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATATATTTTTTTTTGACA+TGG + chr3_1:83068802-83068821 Msa0381090:intron 10.0%
!!! AATATATTTTTTTTTGACAT+GGG + chr3_1:83068803-83068822 Msa0381090:intron 10.0%
!!! AAATTTTACTTTTACTGTAT+TGG + chr3_1:83067247-83067266 Msa0381090:intron 15.0%
!!! TTTCTTTTTTAAAGATTTGA+TGG + chr3_1:83067325-83067344 Msa0381090:intron 15.0%
!!! TTCTTTTTTAAAGATTTGAT+GGG + chr3_1:83067326-83067345 Msa0381090:intron 15.0%
!! AAAAGTAATTAAAACTCAAA+TGG + chr3_1:83067667-83067686 Msa0381090:intron 15.0%
!!! TAATAATATTCTTTTTTTGG+TGG + chr3_1:83067777-83067796 Msa0381090:intron 15.0%
!!! TCTAAATATTATTTTCCTAA+GGG + chr3_1:83068005-83068024 Msa0381090:intron 15.0%
!!! CATTTTGAAACAAATTTTTT+TGG - chr3_1:83068102-83068121 None:intergenic 15.0%
!! AAATTATCTTAATCAACTAT+TGG - chr3_1:83068239-83068258 None:intergenic 15.0%
!! AATAGTTGATTAAGATAATT+TGG + chr3_1:83068238-83068257 Msa0381090:intron 15.0%
!!! TTTACATCATTTTTTTTGAA+AGG - chr3_1:83068549-83068568 None:intergenic 15.0%
!!! TGATATTTTCTTTTCATCAA+TGG + chr3_1:83067289-83067308 Msa0381090:intron 20.0%
!!! TCTTTTTTAAAGATTTGATG+GGG + chr3_1:83067327-83067346 Msa0381090:intron 20.0%
!!! TTATAAAGTGTGTTTTATTG+AGG + chr3_1:83067526-83067545 Msa0381090:intron 20.0%
!! ATATGTAACGTATACATATA+TGG + chr3_1:83067691-83067710 Msa0381090:intron 20.0%
!! ATTATGTAGAATTGATGTTT+GGG + chr3_1:83067980-83067999 Msa0381090:intron 20.0%
!!! GTCTAAATATTATTTTCCTA+AGG + chr3_1:83068004-83068023 Msa0381090:intron 20.0%
!! GTAACATAGTATTAATTGAA+GGG - chr3_1:83068176-83068195 None:intergenic 20.0%
!! TGTAACATAGTATTAATTGA+AGG - chr3_1:83068177-83068196 None:intergenic 20.0%
!! TGATTATGTTAAACTTACAA+AGG - chr3_1:83068436-83068455 None:intergenic 20.0%
! TCTATATTATAAAGTGAACG+TGG - chr3_1:83065968-83065987 None:intergenic 25.0%
!! CAAGTATATATGTTGATTAG+AGG - chr3_1:83066003-83066022 None:intergenic 25.0%
!! TTTTTGTTGATCAATAGAAG+AGG - chr3_1:83066237-83066256 None:intergenic 25.0%
!!! ACGATTTTCTGATTTGTTTT+TGG - chr3_1:83066288-83066307 None:intergenic 25.0%
!!! ATTTTATACGGTGTTGAATA+AGG - chr3_1:83067607-83067626 None:intergenic 25.0%
! GACAATGCATAATATATTCA+AGG - chr3_1:83067824-83067843 None:intergenic 25.0%
! CATTATGTAGAATTGATGTT+TGG + chr3_1:83067979-83067998 Msa0381090:intron 25.0%
!! TATTATTTTCCTAAGGGTTA+AGG + chr3_1:83068011-83068030 Msa0381090:intron 25.0%
!!! AAACGACACTCATTTTAAAA+CGG - chr3_1:83068076-83068095 None:intergenic 25.0%
! GAAAATTGATCTACTCTAAA+TGG + chr3_1:83068388-83068407 Msa0381090:intron 25.0%
! GTCAAAAAAATTATGCAAAG+TGG - chr3_1:83068581-83068600 None:intergenic 25.0%
!!! CTTTGCATAATTTTTTTGAC+AGG + chr3_1:83068581-83068600 Msa0381090:intron 25.0%
!!! TATTTTGATTTCGTGTCTAA+TGG + chr3_1:83068848-83068867 Msa0381090:intron 25.0%
! GGTTTATGTTGATATTTATG+AGG - chr3_1:83069001-83069020 None:intergenic 25.0%
!!! TATACAAGTTGATGCTTTTA+GGG - chr3_1:83069105-83069124 None:intergenic 25.0%
!!! ATATACAAGTTGATGCTTTT+AGG - chr3_1:83069106-83069125 None:intergenic 25.0%
! TAGTATAAATTATGCTAGCT+TGG + chr3_1:83069162-83069181 Msa0381090:three_prime_UTR 25.0%
TATCGTAACGAATTACGTAA+TGG + chr3_1:83066037-83066056 Msa0381090:exon 30.0%
TCAACAAAAACAAGCTACAA+TGG + chr3_1:83066247-83066266 Msa0381090:CDS 30.0%
GATGATAAAAGGGAAATCAA+CGG - chr3_1:83066341-83066360 None:intergenic 30.0%
AAAGAGATTATCACTTCTTC+TGG + chr3_1:83066440-83066459 Msa0381090:CDS 30.0%
GAAAGAGAACAAAATTAGAG+CGG + chr3_1:83066676-83066695 Msa0381090:CDS 30.0%
GAATATGAGTTATCGAGTAA+TGG + chr3_1:83066922-83066941 Msa0381090:CDS 30.0%
TTGTAAACTAACCTTGTCTT+TGG - chr3_1:83067008-83067027 None:intergenic 30.0%
CATAATATATTCAAGGTCTG+AGG - chr3_1:83067817-83067836 None:intergenic 30.0%
!! TTTAAAACGGAGAGAGTATT+TGG - chr3_1:83068063-83068082 None:intergenic 30.0%
!! TTCCTTAATTTGTGTGCAAT+TGG + chr3_1:83068295-83068314 Msa0381090:intron 30.0%
AACCAATTGCACACAAATTA+AGG - chr3_1:83068300-83068319 None:intergenic 30.0%
TAACAGCGATACATAGTTAA+TGG + chr3_1:83069063-83069082 Msa0381090:three_prime_UTR 30.0%
! TGAACGTGGAAAAGAGATTT+TGG - chr3_1:83065954-83065973 None:intergenic 35.0%
GTTGATTAGAGGAAAAGTGA+TGG - chr3_1:83065992-83066011 None:intergenic 35.0%
! GTAACGAATTACGTAATGGA+AGG + chr3_1:83066041-83066060 Msa0381090:exon 35.0%
GAGTTCGTCGGAATAATTAT+CGG - chr3_1:83066186-83066205 None:intergenic 35.0%
AATGAAGATCGAGAATCAAC+CGG - chr3_1:83066214-83066233 None:intergenic 35.0%
! TATTTTCATCGCATAGTGAG+AGG - chr3_1:83066421-83066440 None:intergenic 35.0%
TCACAGACAGAAGAGAATAA+AGG + chr3_1:83066545-83066564 Msa0381090:CDS 35.0%
GAAGAGAATAAAGGAGCAAT+TGG + chr3_1:83066554-83066573 Msa0381090:CDS 35.0%
GAAGCCTTTGGTTGAATTAA+TGG + chr3_1:83066715-83066734 Msa0381090:CDS 35.0%
TACAACTCTTCATGTTTACG+CGG + chr3_1:83067023-83067042 Msa0381090:intron 35.0%
TGCAATTTGCAATTGCAAGA+TGG - chr3_1:83067076-83067095 None:intergenic 35.0%
!!! ATTCTTTTTTTGGTGGTGTC+CGG + chr3_1:83067784-83067803 Msa0381090:intron 35.0%
!! AAGCGACACTCATTTTGAAA+CGG + chr3_1:83068321-83068340 Msa0381090:intron 35.0%
! TTGTTGATTGTTCCTCTTCA+TGG + chr3_1:83068909-83068928 Msa0381090:intron 35.0%
! TGTTGATTGTTCCTCTTCAT+GGG + chr3_1:83068910-83068929 Msa0381090:intron 35.0%
AGACACTAATAGAGCTTCTA+CGG + chr3_1:83068944-83068963 Msa0381090:CDS 35.0%
GTTAGATTGTTGGAGTACAT+TGG - chr3_1:83069047-83069066 None:intergenic 35.0%
ATGTATCGCTGTTAGATTGT+TGG - chr3_1:83069057-83069076 None:intergenic 35.0%
ACAAAGCTTCTTCGTTACAA+AGG - chr3_1:83069132-83069151 None:intergenic 35.0%
!! CTTAGTATGCTTTGCTTTTC+TGG + chr3_1:83069193-83069212 Msa0381090:three_prime_UTR 35.0%
TTCGGTTGTAGTGGTGAATT+CGG - chr3_1:83066129-83066148 None:intergenic 40.0%
AATCAACGGTTTAATAGCGC+CGG - chr3_1:83066327-83066346 None:intergenic 40.0%
TTCTGGTGCGATTAAACCTA+TGG + chr3_1:83066457-83066476 Msa0381090:CDS 40.0%
GTCTTCAAAGCTTTCACCAT+AGG - chr3_1:83066476-83066495 None:intergenic 40.0%
!! ATGGTGAAAGCTTTGAAGAC+AGG + chr3_1:83066476-83066495 Msa0381090:CDS 40.0%
AAAGGAGCAATTGGAAGATG+TGG + chr3_1:83066563-83066582 Msa0381090:CDS 40.0%
TTGGTGAACCTTCTCGAAAA+CGG + chr3_1:83066599-83066618 Msa0381090:CDS 40.0%
AAAATTAGAGCGGTGAAAGC+TGG + chr3_1:83066686-83066705 Msa0381090:CDS 40.0%
AAATTAGAGCGGTGAAAGCT+GGG + chr3_1:83066687-83066706 Msa0381090:CDS 40.0%
GCCTTTGGTTGAATTAATGG+CGG + chr3_1:83066718-83066737 Msa0381090:CDS 40.0%
TCCGCCATTAATTCAACCAA+AGG - chr3_1:83066722-83066741 None:intergenic 40.0%
!! GGTTGAATTAATGGCGGATT+TGG + chr3_1:83066724-83066743 Msa0381090:CDS 40.0%
TGAGAAAGAGAAACCAAAGG+AGG - chr3_1:83066968-83066987 None:intergenic 40.0%
GACTGAGAAAGAGAAACCAA+AGG - chr3_1:83066971-83066990 None:intergenic 40.0%
TTGGTTTCTCTTTCTCAGTC+CGG + chr3_1:83066971-83066990 Msa0381090:CDS 40.0%
TGGAAGAATTACTGCTGACA+TGG - chr3_1:83067056-83067075 None:intergenic 40.0%
ATTTGGATGAGCACAATGCA+TGG - chr3_1:83068046-83068065 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + chr3_1:83068325-83068344 Msa0381090:intron 40.0%
TGATTTCGTGTCTAATGGTG+TGG + chr3_1:83068853-83068872 Msa0381090:intron 40.0%
GTTGATTGTTCCTCTTCATG+GGG + chr3_1:83068911-83068930 Msa0381090:intron 40.0%
TATTTATGAGGCACGTACAG+TGG - chr3_1:83068989-83069008 None:intergenic 40.0%
AGCACAAAGGATATCTGGTA+GGG - chr3_1:83069022-83069041 None:intergenic 40.0%
!!! CAAGTTGATGCTTTTAGGGT+GGG - chr3_1:83069101-83069120 None:intergenic 40.0%
!!! ACAAGTTGATGCTTTTAGGG+TGG - chr3_1:83069102-83069121 None:intergenic 40.0%
!! GATTCTGGTTTCGGTTGTAG+TGG - chr3_1:83066138-83066157 None:intergenic 45.0%
!! AAGGCGTTGGATTCTGGTTT+CGG - chr3_1:83066147-83066166 None:intergenic 45.0%
!! AATGAGAAGGCGTTGGATTC+TGG - chr3_1:83066153-83066172 None:intergenic 45.0%
TGGAAGATGTGGAGCAATTC+CGG + chr3_1:83066574-83066593 Msa0381090:CDS 45.0%
!!! TTGACGCATCTTTTTTCCCG+CGG - chr3_1:83066631-83066650 None:intergenic 45.0%
CGGGAAAAAAGATGCGTCAA+CGG + chr3_1:83066631-83066650 Msa0381090:CDS 45.0%
AGCTGGGATAATGAAGCCTT+TGG + chr3_1:83066703-83066722 Msa0381090:CDS 45.0%
GGATTTGGATTCGTACATGG+TGG + chr3_1:83066739-83066758 Msa0381090:CDS 45.0%
GCAGAGACAGAAGGAAATTG+CGG + chr3_1:83066871-83066890 Msa0381090:CDS 45.0%
AAGGAGGAATAGCACCTTCA+CGG - chr3_1:83066952-83066971 None:intergenic 45.0%
!! TGAAGGTGCTATTCCTCCTT+TGG + chr3_1:83066952-83066971 Msa0381090:CDS 45.0%
!!! TTTTTGGTGGTGTCCGGATT+CGG + chr3_1:83067790-83067809 Msa0381090:intron 45.0%
TTACCAACTGAGCTAGCTCA+CGG + chr3_1:83067845-83067864 Msa0381090:intron 45.0%
AAGGACATGCCTTAACCCTT+AGG - chr3_1:83068023-83068042 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + chr3_1:83068324-83068343 Msa0381090:intron 45.0%
ACAGTGGCATTGCTAGATCT+TGG - chr3_1:83068973-83068992 None:intergenic 45.0%
GAGCACAAAGGATATCTGGT+AGG - chr3_1:83069023-83069042 None:intergenic 45.0%
TGGTGAGCACAAAGGATATC+TGG - chr3_1:83069027-83069046 None:intergenic 45.0%
GAGTACATTGGTGAGCACAA+AGG - chr3_1:83069035-83069054 None:intergenic 45.0%
!!! TATAAATAACATATTTTATA+CGG - chr3_1:83067619-83067638 None:intergenic 5.0%
!!! TTTTAATAATATTCTTTTTT+TGG + chr3_1:83067774-83067793 Msa0381090:intron 5.0%
!! ATTAAAGAAAAAATAATATT+TGG - chr3_1:83068206-83068225 None:intergenic 5.0%
!! AAATAAATAAATCTAATAAA+AGG - chr3_1:83068488-83068507 None:intergenic 5.0%
ACTGTCGCAGTCACTGAAAG+CGG - chr3_1:83066096-83066115 None:intergenic 50.0%
GGTTGTAGTGGTGAATTCGG+TGG - chr3_1:83066126-83066145 None:intergenic 50.0%
! CGCATGTAATGAGAAGGCGT+TGG - chr3_1:83066160-83066179 None:intergenic 50.0%
! CGGAAGCGCATGTAATGAGA+AGG - chr3_1:83066166-83066185 None:intergenic 50.0%
ATTCCGACGAACTCATTCGC+CGG + chr3_1:83066192-83066211 Msa0381090:CDS 50.0%
CGGCGACGGTGATGATAAAA+GGG - chr3_1:83066351-83066370 None:intergenic 50.0%
! CCTTTTATCATCACCGTCGC+CGG + chr3_1:83066349-83066368 Msa0381090:CDS 50.0%
! CTTTTATCATCACCGTCGCC+GGG + chr3_1:83066350-83066369 Msa0381090:CDS 50.0%
! TTTTATCATCACCGTCGCCG+GGG + chr3_1:83066351-83066370 Msa0381090:CDS 50.0%
TGCAGTTGAAGATCCATCCC+CGG - chr3_1:83066371-83066390 None:intergenic 50.0%
ATGTGGAGCAATTCCGGCAT+TGG + chr3_1:83066580-83066599 Msa0381090:CDS 50.0%
TCGAGAAGGTTCACCAATGC+CGG - chr3_1:83066596-83066615 None:intergenic 50.0%
GTGAACCTTCTCGAAAACGG+AGG + chr3_1:83066602-83066621 Msa0381090:CDS 50.0%
!! GGATTCCTCCGTTTTCGAGA+AGG - chr3_1:83066610-83066629 None:intergenic 50.0%
! GGCGGATTTGGATTCGTACA+TGG + chr3_1:83066736-83066755 Msa0381090:CDS 50.0%
AGCGTATGTGATGAGCGTGT+TGG + chr3_1:83066769-83066788 Msa0381090:CDS 50.0%
! TGTGATGAGCGTGTTGGTGA+CGG + chr3_1:83066775-83066794 Msa0381090:CDS 50.0%
TCCACAATCTCCACCAACAC+CGG - chr3_1:83066842-83066861 None:intergenic 50.0%
TTGGTGGAGATTGTGGAGGT+TGG + chr3_1:83066845-83066864 Msa0381090:CDS 50.0%
TGGTGGAGATTGTGGAGGTT+GGG + chr3_1:83066846-83066865 Msa0381090:CDS 50.0%
GAGACAGAAGGAAATTGCGG+CGG + chr3_1:83066874-83066893 Msa0381090:CDS 50.0%
TACCATTCGCGCCAAAGACA+AGG + chr3_1:83066994-83067013 Msa0381090:CDS 50.0%
AACCTTGTCTTTGGCGCGAA+TGG - chr3_1:83066999-83067018 None:intergenic 50.0%
! GTGAGCTAGCTCAGTTGGTA+AGG - chr3_1:83067846-83067865 None:intergenic 50.0%
GGATGAGCACAATGCATGGA+AGG - chr3_1:83068042-83068061 None:intergenic 50.0%
GCAGTCACTGAAAGCGGAAG+AGG - chr3_1:83066090-83066109 None:intergenic 55.0%
CAACCGGCGAATGAGTTCGT+CGG - chr3_1:83066198-83066217 None:intergenic 55.0%
CGTCTCAGAATCGCCAAAGC+CGG + chr3_1:83066305-83066324 Msa0381090:CDS 55.0%
!! CGGTTTAATAGCGCCGGCTT+TGG - chr3_1:83066321-83066340 None:intergenic 55.0%
CCGGCGACGGTGATGATAAA+AGG - chr3_1:83066352-83066371 None:intergenic 55.0%
GCTGCATTCTCCTTCGCAGT+TGG - chr3_1:83066506-83066525 None:intergenic 55.0%
CTCGAAAACGGAGGAATCCG+CGG + chr3_1:83066611-83066630 Msa0381090:CDS 55.0%
TCGAAAACGGAGGAATCCGC+GGG + chr3_1:83066612-83066631 Msa0381090:CDS 55.0%
!! TCCGGTGTTGGTGGAGATTG+TGG + chr3_1:83066838-83066857 Msa0381090:CDS 55.0%
!! GGTGTTGGTGGAGATTGTGG+AGG + chr3_1:83066841-83066860 Msa0381090:CDS 55.0%
CGAGTAATGGTCTGCCGTGA+AGG + chr3_1:83066935-83066954 Msa0381090:CDS 55.0%
GTCTTTGGCGCGAATGGTAC+CGG - chr3_1:83066993-83067012 None:intergenic 55.0%
! CAAGGTCTGAGGTCCGAATC+CGG - chr3_1:83067806-83067825 None:intergenic 55.0%
TCTCCGTGAGCTAGCTCAGT+TGG - chr3_1:83067851-83067870 None:intergenic 55.0%
GTTCCTCTTCATGGGGACAC+AGG + chr3_1:83068918-83068937 Msa0381090:intron 55.0%
CTACCTGTGTCCCCATGAAG+AGG - chr3_1:83068924-83068943 None:intergenic 55.0%
TGAAGATCCATCCCCGGCGA+CGG - chr3_1:83066365-83066384 None:intergenic 60.0%
GACAGGCACTCCAACTGCGA+AGG + chr3_1:83066493-83066512 Msa0381090:CDS 60.0%
!! GAGCGTGTTGGTGACGGTTG+TGG + chr3_1:83066781-83066800 Msa0381090:CDS 60.0%
!! TGGTGACGGTTGTGGAAGCG+AGG + chr3_1:83066789-83066808 Msa0381090:CDS 60.0%
GACGGTTGTGGAAGCGAGGA+CGG + chr3_1:83066793-83066812 Msa0381090:CDS 60.0%
GGTGGAGGAAGGAGGGATTC+CGG + chr3_1:83066820-83066839 Msa0381090:CDS 60.0%
GGAAGGAGGGATTCCGGTGT+TGG + chr3_1:83066826-83066845 Msa0381090:CDS 60.0%
! AGGAGGGATTCCGGTGTTGG+TGG + chr3_1:83066829-83066848 Msa0381090:CDS 60.0%
GGTTGGGACGCAGAGACAGA+AGG + chr3_1:83066862-83066881 Msa0381090:CDS 60.0%
ATCATCACCGTCGCCGGGGA+TGG + chr3_1:83066355-83066374 Msa0381090:CDS 65.0%
TGTGGAAGCGAGGACGGCGT+TGG + chr3_1:83066799-83066818 Msa0381090:CDS 65.0%
!! AGGACGGCGTTGGTGGAGGA+AGG + chr3_1:83066809-83066828 Msa0381090:CDS 65.0%
!! ACGGCGTTGGTGGAGGAAGG+AGG + chr3_1:83066812-83066831 Msa0381090:CDS 65.0%
!! CGGCGTTGGTGGAGGAAGGA+GGG + chr3_1:83066813-83066832 Msa0381090:CDS 65.0%
! GGAAGCGAGGACGGCGTTGG+TGG + chr3_1:83066802-83066821 Msa0381090:CDS 70.0%
!! AGCGAGGACGGCGTTGGTGG+AGG + chr3_1:83066805-83066824 Msa0381090:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 83065951 83069248 83065951 ID=Msa0381090;Name=Msa0381090
chr3_1 mRNA 83065951 83069248 83065951 ID=Msa0381090-mRNA-1;Parent=Msa0381090;Name=Msa0381090-mRNA-1;_AED=0.02;_eAED=0.02;_QI=105|1|1|1|1|1|2|243|341
chr3_1 exon 83065951 83067015 83065951 ID=Msa0381090-mRNA-1:exon:21260;Parent=Msa0381090-mRNA-1
chr3_1 exon 83068940 83069248 83068940 ID=Msa0381090-mRNA-1:exon:21261;Parent=Msa0381090-mRNA-1
chr3_1 five_prime_UTR 83065951 83066055 83065951 ID=Msa0381090-mRNA-1:five_prime_utr;Parent=Msa0381090-mRNA-1
chr3_1 CDS 83066056 83067015 83066056 ID=Msa0381090-mRNA-1:cds;Parent=Msa0381090-mRNA-1
chr3_1 CDS 83068940 83069005 83068940 ID=Msa0381090-mRNA-1:cds;Parent=Msa0381090-mRNA-1
chr3_1 three_prime_UTR 83069006 83069248 83069006 ID=Msa0381090-mRNA-1:three_prime_utr;Parent=Msa0381090-mRNA-1
Gene Sequence

>Msa0381090

ATGGAAGGAACTTTCAATTTCAACGATAATTCCTCTTCCGCTTTCAGTGACTGCGACAGTGACAGATCCACCGAATTCACCACTACAACCGAAACCAGAATCCAACGCCTTCTCATTACATGCGCTTCCGATAATTATTCCGACGAACTCATTCGCCGGTTGATTCTCGATCTTCATTCCTCTTCTATTGATCAACAAAAACAAGCTACAATGGAAATCAGATTACTCGCCAAAAACAAATCAGAAAATCGTCTCAGAATCGCCAAAGCCGGCGCTATTAAACCGTTGATTTCCCTTTTATCATCACCGTCGCCGGGGATGGATCTTCAACTGCAAGAATACGTCGTCACAGCGATTTTAAACCTCTCACTATGCGATGAAAATAAAGAGATTATCACTTCTTCTGGTGCGATTAAACCTATGGTGAAAGCTTTGAAGACAGGCACTCCAACTGCGAAGGAGAATGCAGCATGTGCTCTGCTTCGTCTCTCACAGACAGAAGAGAATAAAGGAGCAATTGGAAGATGTGGAGCAATTCCGGCATTGGTGAACCTTCTCGAAAACGGAGGAATCCGCGGGAAAAAAGATGCGTCAACGGCGTTATACACGTTGTGTTCTGTGAAAGAGAACAAAATTAGAGCGGTGAAAGCTGGGATAATGAAGCCTTTGGTTGAATTAATGGCGGATTTGGATTCGTACATGGTGGATAAGTCAGCGTATGTGATGAGCGTGTTGGTGACGGTTGTGGAAGCGAGGACGGCGTTGGTGGAGGAAGGAGGGATTCCGGTGTTGGTGGAGATTGTGGAGGTTGGGACGCAGAGACAGAAGGAAATTGCGGCGGCGATTTTGTTGAAGATTTGTGAAGAGAATATGAGTTATCGAGTAATGGTCTGCCGTGAAGGTGCTATTCCTCCTTTGGTTTCTCTTTCTCAGTCCGGTACCATTCGCGCCAAAGACAAGGTAGAGACACTAATAGAGCTTCTACGGCAACCAAGATCTAGCAATGCCACTGTACGTGCCTCATAA

Protein sequence

>Msa0381090

MEGTFNFNDNSSSAFSDCDSDRSTEFTTTTETRIQRLLITCASDNYSDELIRRLILDLHSSSIDQQKQATMEIRLLAKNKSENRLRIAKAGAIKPLISLLSSPSPGMDLQLQEYVVTAILNLSLCDENKEIITSSGAIKPMVKALKTGTPTAKENAACALLRLSQTEENKGAIGRCGAIPALVNLLENGGIRGKKDASTALYTLCSVKENKIRAVKAGIMKPLVELMADLDSYMVDKSAYVMSVLVTVVEARTALVEEGGIPVLVEIVEVGTQRQKEIAAAILLKICEENMSYRVMVCREGAIPPLVSLSQSGTIRAKDKVETLIELLRQPRSSNATVRAS*