Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0381090 | XP_013461777.1 | 95.601 | 341 | 15 | 0 | 1 | 341 | 1 | 341 | 0.0 | 657 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0381090 | sp|O22193|PUB4_ARATH | 45.181 | 332 | 169 | 4 | 13 | 336 | 497 | 823 | 3.57e-78 | 258 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0381090 | A0A072V1W3 | 95.601 | 341 | 15 | 0 | 1 | 341 | 1 | 341 | 0.0 | 657 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0380990 | Msa0381090 | 0.976017 | 5.004340e-141 | -8.615850e-47 |
Msa0381090 | Msa0430860 | 0.912909 | 1.133887e-83 | -8.615850e-47 |
Msa0381090 | Msa0430960 | 0.913388 | 6.520404e-84 | -8.615850e-47 |
Msa0381090 | Msa0590640 | 0.810059 | 1.391313e-50 | -8.615850e-47 |
Msa0381090 | Msa0597770 | 0.804858 | 1.765192e-49 | -8.615850e-47 |
Msa0381090 | Msa0630940 | 0.800748 | 1.245965e-48 | -8.615850e-47 |
Msa0381090 | Msa0669180 | 0.807320 | 5.353890e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0381090 | MtrunA17_Chr3g0134761 | 95.601 | 341 | 15 | 0 | 1 | 341 | 1 | 341 | 0.0 | 657 |
Msa0381090 | MtrunA17_Chr1g0152561 | 76.737 | 331 | 70 | 4 | 5 | 334 | 16 | 340 | 3.71e-178 | 497 |
Msa0381090 | MtrunA17_Chr2g0290151 | 49.020 | 306 | 140 | 3 | 44 | 337 | 156 | 457 | 2.62e-83 | 259 |
Msa0381090 | MtrunA17_Chr1g0183781 | 49.477 | 287 | 140 | 2 | 51 | 337 | 440 | 721 | 5.19e-80 | 258 |
Msa0381090 | MtrunA17_Chr3g0106931 | 51.748 | 286 | 133 | 2 | 51 | 336 | 553 | 833 | 1.96e-77 | 253 |
Msa0381090 | MtrunA17_Chr7g0261371 | 46.809 | 282 | 145 | 2 | 51 | 332 | 514 | 790 | 1.90e-70 | 234 |
Msa0381090 | MtrunA17_Chr4g0044411 | 45.357 | 280 | 149 | 1 | 51 | 330 | 373 | 648 | 1.58e-67 | 223 |
Msa0381090 | MtrunA17_Chr4g0031431 | 43.262 | 282 | 156 | 1 | 51 | 332 | 353 | 630 | 2.00e-61 | 207 |
Msa0381090 | MtrunA17_Chr7g0248251 | 40.794 | 277 | 160 | 1 | 54 | 330 | 370 | 642 | 2.52e-61 | 207 |
Msa0381090 | MtrunA17_Chr1g0199321 | 45.714 | 280 | 148 | 1 | 51 | 330 | 345 | 620 | 1.65e-60 | 204 |
Msa0381090 | MtrunA17_Chr7g0237931 | 41.581 | 291 | 155 | 4 | 43 | 328 | 325 | 605 | 1.28e-58 | 199 |
Msa0381090 | MtrunA17_Chr5g0437411 | 39.655 | 290 | 162 | 6 | 54 | 334 | 408 | 693 | 7.00e-47 | 168 |
Msa0381090 | MtrunA17_Chr5g0429231 | 35.379 | 277 | 170 | 5 | 58 | 329 | 41 | 313 | 6.12e-38 | 138 |
Msa0381090 | MtrunA17_Chr7g0275081 | 36.170 | 282 | 168 | 7 | 53 | 326 | 171 | 448 | 8.79e-35 | 132 |
Msa0381090 | MtrunA17_Chr2g0284461 | 37.329 | 292 | 169 | 9 | 54 | 339 | 399 | 682 | 1.31e-33 | 131 |
Msa0381090 | MtrunA17_Chr7g0234671 | 32.616 | 279 | 183 | 4 | 55 | 330 | 175 | 451 | 2.24e-31 | 122 |
Msa0381090 | MtrunA17_Chr5g0435041 | 33.803 | 284 | 177 | 6 | 51 | 329 | 20 | 297 | 4.96e-29 | 115 |
Msa0381090 | MtrunA17_Chr1g0189811 | 34.375 | 288 | 183 | 5 | 51 | 334 | 157 | 442 | 8.84e-27 | 110 |
Msa0381090 | MtrunA17_Chr3g0118001 | 26.882 | 279 | 195 | 3 | 54 | 329 | 214 | 486 | 8.75e-26 | 107 |
Msa0381090 | MtrunA17_Chr6g0449461 | 30.479 | 292 | 184 | 8 | 52 | 333 | 3 | 285 | 2.92e-25 | 103 |
Msa0381090 | MtrunA17_Chr3g0111451 | 34.708 | 291 | 176 | 7 | 51 | 333 | 41 | 325 | 1.77e-24 | 102 |
Msa0381090 | MtrunA17_Chr8g0377151 | 31.985 | 272 | 178 | 6 | 72 | 338 | 449 | 718 | 6.37e-24 | 102 |
Msa0381090 | MtrunA17_Chr4g0013091 | 30.690 | 290 | 185 | 8 | 50 | 330 | 416 | 698 | 1.11e-20 | 93.2 |
Msa0381090 | MtrunA17_Chr4g0059201 | 29.412 | 306 | 198 | 10 | 42 | 339 | 417 | 712 | 7.16e-20 | 90.9 |
Msa0381090 | MtrunA17_Chr6g0451581 | 25.822 | 213 | 153 | 2 | 116 | 325 | 299 | 509 | 1.17e-17 | 84.0 |
Msa0381090 | MtrunA17_Chr1g0149941 | 27.931 | 290 | 190 | 9 | 53 | 329 | 175 | 458 | 1.74e-17 | 83.6 |
Msa0381090 | MtrunA17_Chr3g0122721 | 28.947 | 266 | 181 | 6 | 72 | 332 | 448 | 710 | 2.33e-17 | 83.2 |
Msa0381090 | MtrunA17_Chr3g0137061 | 27.491 | 291 | 193 | 7 | 51 | 329 | 110 | 394 | 4.72e-17 | 82.0 |
Msa0381090 | MtrunA17_Chr3g0117851 | 27.586 | 290 | 160 | 8 | 47 | 330 | 378 | 623 | 7.25e-16 | 78.6 |
Msa0381090 | MtrunA17_Chr4g0048811 | 30.882 | 204 | 134 | 6 | 129 | 329 | 121 | 320 | 1.85e-15 | 76.3 |
Msa0381090 | MtrunA17_Chr1g0199031 | 39.496 | 119 | 55 | 1 | 132 | 250 | 18 | 119 | 2.40e-15 | 72.0 |
Msa0381090 | MtrunA17_Chr8g0350681 | 28.251 | 223 | 146 | 7 | 91 | 309 | 238 | 450 | 8.49e-15 | 75.5 |
Msa0381090 | MtrunA17_Chr2g0280671 | 29.008 | 262 | 166 | 9 | 75 | 329 | 131 | 379 | 2.67e-13 | 70.1 |
Msa0381090 | MtrunA17_Chr7g0259851 | 25.214 | 234 | 163 | 3 | 58 | 291 | 276 | 497 | 3.56e-11 | 64.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0381090 | AT3G01400.1 | 73.824 | 340 | 78 | 7 | 5 | 341 | 21 | 352 | 1.13e-170 | 479 |
Msa0381090 | AT5G58680.1 | 69.277 | 332 | 91 | 6 | 4 | 332 | 18 | 341 | 1.25e-158 | 448 |
Msa0381090 | AT4G16490.1 | 50.505 | 297 | 141 | 2 | 38 | 332 | 172 | 464 | 1.10e-83 | 261 |
Msa0381090 | AT2G23140.3 | 45.181 | 332 | 169 | 4 | 13 | 336 | 308 | 634 | 7.91e-81 | 258 |
Msa0381090 | AT2G23140.5 | 45.181 | 332 | 169 | 4 | 13 | 336 | 308 | 634 | 7.91e-81 | 258 |
Msa0381090 | AT2G23140.2 | 45.181 | 332 | 169 | 4 | 13 | 336 | 497 | 823 | 3.63e-79 | 258 |
Msa0381090 | AT2G23140.4 | 45.181 | 332 | 169 | 4 | 13 | 336 | 497 | 823 | 3.63e-79 | 258 |
Msa0381090 | AT2G23140.1 | 45.181 | 332 | 169 | 4 | 13 | 336 | 500 | 826 | 4.17e-79 | 258 |
Msa0381090 | AT5G67340.1 | 48.252 | 286 | 142 | 3 | 51 | 335 | 423 | 703 | 9.41e-74 | 241 |
Msa0381090 | AT5G67340.2 | 48.252 | 286 | 142 | 3 | 51 | 335 | 423 | 703 | 9.41e-74 | 241 |
Msa0381090 | AT3G54790.2 | 48.057 | 283 | 141 | 3 | 53 | 334 | 440 | 717 | 3.77e-70 | 232 |
Msa0381090 | AT3G54790.3 | 48.057 | 283 | 141 | 3 | 53 | 334 | 476 | 753 | 1.35e-69 | 231 |
Msa0381090 | AT3G54790.1 | 48.057 | 283 | 141 | 3 | 53 | 334 | 476 | 753 | 1.35e-69 | 231 |
Msa0381090 | AT1G23030.1 | 45.035 | 282 | 150 | 2 | 50 | 330 | 332 | 609 | 1.08e-68 | 226 |
Msa0381090 | AT1G71020.2 | 45.907 | 281 | 148 | 2 | 51 | 330 | 195 | 472 | 1.21e-68 | 223 |
Msa0381090 | AT1G71020.1 | 45.907 | 281 | 148 | 2 | 51 | 330 | 343 | 620 | 1.54e-67 | 223 |
Msa0381090 | AT3G54850.1 | 47.518 | 282 | 142 | 3 | 50 | 330 | 346 | 622 | 1.11e-62 | 211 |
Msa0381090 | AT3G46510.1 | 42.391 | 276 | 155 | 1 | 51 | 326 | 354 | 625 | 1.67e-61 | 208 |
Msa0381090 | AT2G28830.1 | 40.942 | 276 | 159 | 2 | 51 | 325 | 285 | 557 | 7.54e-59 | 199 |
Msa0381090 | AT5G42340.1 | 39.310 | 290 | 172 | 1 | 39 | 328 | 369 | 654 | 3.93e-52 | 182 |
Msa0381090 | AT3G07360.5 | 33.681 | 288 | 181 | 8 | 49 | 330 | 34 | 317 | 2.66e-35 | 131 |
Msa0381090 | AT3G07360.3 | 33.681 | 288 | 181 | 8 | 49 | 330 | 34 | 317 | 2.66e-35 | 131 |
Msa0381090 | AT3G07360.9 | 33.681 | 288 | 181 | 8 | 49 | 330 | 34 | 317 | 2.66e-35 | 131 |
Msa0381090 | AT3G07360.6 | 33.681 | 288 | 181 | 8 | 49 | 330 | 34 | 317 | 2.66e-35 | 131 |
Msa0381090 | AT3G07360.2 | 33.681 | 288 | 181 | 8 | 49 | 330 | 34 | 317 | 2.66e-35 | 131 |
Msa0381090 | AT3G07360.8 | 33.681 | 288 | 181 | 8 | 49 | 330 | 34 | 317 | 2.66e-35 | 131 |
Msa0381090 | AT3G07360.10 | 33.681 | 288 | 181 | 8 | 49 | 330 | 34 | 317 | 2.66e-35 | 131 |
Msa0381090 | AT3G07360.7 | 33.681 | 288 | 181 | 8 | 49 | 330 | 34 | 317 | 2.66e-35 | 131 |
Msa0381090 | AT3G07360.4 | 33.681 | 288 | 181 | 8 | 49 | 330 | 34 | 317 | 2.66e-35 | 131 |
Msa0381090 | AT3G07360.1 | 33.681 | 288 | 181 | 8 | 49 | 330 | 169 | 452 | 3.61e-34 | 130 |
Msa0381090 | AT3G03440.1 | 31.307 | 329 | 215 | 6 | 17 | 339 | 32 | 355 | 1.97e-33 | 128 |
Msa0381090 | AT4G12710.1 | 33.557 | 298 | 184 | 8 | 50 | 337 | 46 | 339 | 1.49e-30 | 120 |
Msa0381090 | AT1G29340.1 | 34.568 | 324 | 196 | 9 | 24 | 340 | 381 | 695 | 3.55e-27 | 112 |
Msa0381090 | AT1G67530.2 | 31.321 | 265 | 176 | 5 | 72 | 332 | 447 | 709 | 3.10e-23 | 101 |
Msa0381090 | AT1G67530.1 | 31.321 | 265 | 176 | 5 | 72 | 332 | 447 | 709 | 3.10e-23 | 101 |
Msa0381090 | AT1G67530.4 | 31.321 | 265 | 176 | 5 | 72 | 332 | 447 | 709 | 3.10e-23 | 101 |
Msa0381090 | AT5G18320.1 | 26.351 | 296 | 175 | 7 | 60 | 330 | 171 | 448 | 2.74e-22 | 97.8 |
Msa0381090 | AT5G62560.1 | 28.159 | 277 | 188 | 6 | 58 | 329 | 243 | 513 | 4.02e-22 | 97.8 |
Msa0381090 | AT5G40140.1 | 27.402 | 281 | 192 | 5 | 54 | 329 | 233 | 506 | 2.67e-21 | 95.1 |
Msa0381090 | AT1G24330.1 | 29.924 | 264 | 178 | 5 | 73 | 332 | 448 | 708 | 4.11e-21 | 95.1 |
Msa0381090 | AT1G24330.2 | 29.924 | 264 | 178 | 5 | 73 | 332 | 448 | 708 | 4.11e-21 | 95.1 |
Msa0381090 | AT5G01830.1 | 30.686 | 277 | 173 | 8 | 62 | 330 | 380 | 645 | 7.31e-19 | 88.2 |
Msa0381090 | AT1G27910.1 | 28.625 | 269 | 187 | 5 | 72 | 337 | 445 | 711 | 7.32e-19 | 88.2 |
Msa0381090 | AT4G31890.3 | 29.180 | 305 | 184 | 11 | 49 | 329 | 132 | 428 | 2.57e-18 | 86.3 |
Msa0381090 | AT4G31890.2 | 29.180 | 305 | 184 | 11 | 49 | 329 | 132 | 428 | 2.57e-18 | 86.3 |
Msa0381090 | AT4G31890.1 | 29.180 | 305 | 184 | 11 | 49 | 329 | 132 | 428 | 2.57e-18 | 86.3 |
Msa0381090 | AT5G65200.1 | 25.352 | 284 | 195 | 5 | 58 | 330 | 233 | 510 | 3.58e-17 | 82.8 |
Msa0381090 | AT2G25130.1 | 27.985 | 268 | 179 | 7 | 72 | 329 | 132 | 395 | 1.09e-16 | 81.3 |
Msa0381090 | AT4G21350.1 | 33.645 | 214 | 132 | 5 | 76 | 287 | 121 | 326 | 3.46e-16 | 79.3 |
Msa0381090 | AT5G14510.1 | 30.108 | 279 | 180 | 8 | 58 | 329 | 9 | 279 | 4.49e-16 | 78.6 |
Msa0381090 | AT3G47820.1 | 29.515 | 227 | 150 | 5 | 111 | 329 | 263 | 487 | 5.59e-16 | 79.3 |
Msa0381090 | AT1G10560.1 | 29.258 | 229 | 148 | 7 | 68 | 287 | 407 | 630 | 2.52e-13 | 71.2 |
Msa0381090 | AT5G13060.1 | 24.088 | 274 | 170 | 4 | 54 | 293 | 272 | 541 | 4.38e-13 | 70.9 |
Msa0381090 | AT3G20170.1 | 27.530 | 247 | 166 | 7 | 84 | 328 | 144 | 379 | 1.46e-12 | 68.9 |
Msa0381090 | AT1G77460.2 | 29.070 | 258 | 152 | 9 | 87 | 331 | 467 | 706 | 2.39e-12 | 68.9 |
Msa0381090 | AT1G77460.3 | 29.070 | 258 | 152 | 9 | 87 | 331 | 467 | 706 | 2.39e-12 | 68.9 |
Msa0381090 | AT1G77460.4 | 29.070 | 258 | 152 | 9 | 87 | 331 | 467 | 706 | 2.39e-12 | 68.9 |
Msa0381090 | AT1G77460.1 | 29.070 | 258 | 152 | 9 | 87 | 331 | 467 | 706 | 2.39e-12 | 68.9 |
Msa0381090 | AT3G60350.1 | 31.875 | 160 | 98 | 3 | 89 | 245 | 599 | 750 | 1.71e-11 | 65.9 |
Msa0381090 | AT3G60350.2 | 31.875 | 160 | 98 | 3 | 89 | 245 | 599 | 750 | 1.71e-11 | 65.9 |
Msa0381090 | AT5G18330.1 | 29.947 | 187 | 117 | 4 | 47 | 221 | 142 | 326 | 2.87e-11 | 64.7 |
Find 100 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAAGCCTTTGGTTGAATTAA+TGG | 0.174563 | 3_1:+83066715 | Msa0381090:CDS |
TGAACGTGGAAAAGAGATTT+TGG | 0.221914 | 3_1:-83065951 | None:intergenic |
CCGGCGACGGTGATGATAAA+AGG | 0.253012 | 3_1:-83066349 | None:intergenic |
AAAGAGATTATCACTTCTTC+TGG | 0.285237 | 3_1:+83066440 | Msa0381090:CDS |
AATGAGAAGGCGTTGGATTC+TGG | 0.288615 | 3_1:-83066150 | None:intergenic |
TAACAGCGATACATAGTTAA+TGG | 0.292630 | 3_1:+83069063 | Msa0381090:three_prime_UTR |
GGTTGAATTAATGGCGGATT+TGG | 0.298923 | 3_1:+83066724 | Msa0381090:CDS |
TTGGTGGAGATTGTGGAGGT+TGG | 0.310557 | 3_1:+83066845 | Msa0381090:CDS |
AAGGCGTTGGATTCTGGTTT+CGG | 0.334331 | 3_1:-83066144 | None:intergenic |
TGGAAGATGTGGAGCAATTC+CGG | 0.336516 | 3_1:+83066574 | Msa0381090:CDS |
GAAGAGAATAAAGGAGCAAT+TGG | 0.355932 | 3_1:+83066554 | Msa0381090:CDS |
TGAAGGTGCTATTCCTCCTT+TGG | 0.356535 | 3_1:+83066952 | Msa0381090:CDS |
TTGTAAACTAACCTTGTCTT+TGG | 0.375974 | 3_1:-83067005 | None:intergenic |
CAAGTATATATGTTGATTAG+AGG | 0.381732 | 3_1:-83066000 | None:intergenic |
TGGTGAGCACAAAGGATATC+TGG | 0.396238 | 3_1:-83069024 | None:intergenic |
CGGTTTAATAGCGCCGGCTT+TGG | 0.400784 | 3_1:-83066318 | None:intergenic |
ATCATCACCGTCGCCGGGGA+TGG | 0.404318 | 3_1:+83066355 | Msa0381090:CDS |
ATGTATCGCTGTTAGATTGT+TGG | 0.419071 | 3_1:-83069054 | None:intergenic |
GTCTTTGGCGCGAATGGTAC+CGG | 0.420372 | 3_1:-83066990 | None:intergenic |
TTCTGGTGCGATTAAACCTA+TGG | 0.424118 | 3_1:+83066457 | Msa0381090:CDS |
AAAATTAGAGCGGTGAAAGC+TGG | 0.424978 | 3_1:+83066686 | Msa0381090:CDS |
TGGTGGAGATTGTGGAGGTT+GGG | 0.434537 | 3_1:+83066846 | Msa0381090:CDS |
GGTGGAGGAAGGAGGGATTC+CGG | 0.437700 | 3_1:+83066820 | Msa0381090:CDS |
TCGAGAAGGTTCACCAATGC+CGG | 0.444467 | 3_1:-83066593 | None:intergenic |
TCACAGACAGAAGAGAATAA+AGG | 0.451466 | 3_1:+83066545 | Msa0381090:CDS |
TTCGGTTGTAGTGGTGAATT+CGG | 0.452339 | 3_1:-83066126 | None:intergenic |
GGAAGCGAGGACGGCGTTGG+TGG | 0.454845 | 3_1:+83066802 | Msa0381090:CDS |
TCCGGTGTTGGTGGAGATTG+TGG | 0.459535 | 3_1:+83066838 | Msa0381090:CDS |
GAGCGTGTTGGTGACGGTTG+TGG | 0.461714 | 3_1:+83066781 | Msa0381090:CDS |
TTGGTTTCTCTTTCTCAGTC+CGG | 0.462112 | 3_1:+83066971 | Msa0381090:CDS |
ACAGTGGCATTGCTAGATCT+TGG | 0.468286 | 3_1:-83068970 | None:intergenic |
AGCGAGGACGGCGTTGGTGG+AGG | 0.468776 | 3_1:+83066805 | Msa0381090:CDS |
AACCTTGTCTTTGGCGCGAA+TGG | 0.469160 | 3_1:-83066996 | None:intergenic |
GGAAGGAGGGATTCCGGTGT+TGG | 0.479242 | 3_1:+83066826 | Msa0381090:CDS |
GAGTTCGTCGGAATAATTAT+CGG | 0.485596 | 3_1:-83066183 | None:intergenic |
AGCTGGGATAATGAAGCCTT+TGG | 0.485681 | 3_1:+83066703 | Msa0381090:CDS |
GCTGCATTCTCCTTCGCAGT+TGG | 0.494828 | 3_1:-83066503 | None:intergenic |
AGACACTAATAGAGCTTCTA+CGG | 0.497235 | 3_1:+83068944 | Msa0381090:CDS |
GGCGGATTTGGATTCGTACA+TGG | 0.497248 | 3_1:+83066736 | Msa0381090:CDS |
GGTTTATGTTGATATTTATG+AGG | 0.498706 | 3_1:-83068998 | None:intergenic |
GTCTTCAAAGCTTTCACCAT+AGG | 0.500526 | 3_1:-83066473 | None:intergenic |
TATCGTAACGAATTACGTAA+TGG | 0.507898 | 3_1:+83066037 | Msa0381090:exon |
CGGCGACGGTGATGATAAAA+GGG | 0.510450 | 3_1:-83066348 | None:intergenic |
ACGGCGTTGGTGGAGGAAGG+AGG | 0.512484 | 3_1:+83066812 | Msa0381090:CDS |
ATGTGGAGCAATTCCGGCAT+TGG | 0.515544 | 3_1:+83066580 | Msa0381090:CDS |
AAATTAGAGCGGTGAAAGCT+GGG | 0.520695 | 3_1:+83066687 | Msa0381090:CDS |
TTGGTGAACCTTCTCGAAAA+CGG | 0.521459 | 3_1:+83066599 | Msa0381090:CDS |
AATGAAGATCGAGAATCAAC+CGG | 0.523414 | 3_1:-83066211 | None:intergenic |
CGAGTAATGGTCTGCCGTGA+AGG | 0.523826 | 3_1:+83066935 | Msa0381090:CDS |
TGTGGAAGCGAGGACGGCGT+TGG | 0.525083 | 3_1:+83066799 | Msa0381090:CDS |
GACGGTTGTGGAAGCGAGGA+CGG | 0.527350 | 3_1:+83066793 | Msa0381090:CDS |
CGTCTCAGAATCGCCAAAGC+CGG | 0.529146 | 3_1:+83066305 | Msa0381090:CDS |
CGGCGTTGGTGGAGGAAGGA+GGG | 0.530478 | 3_1:+83066813 | Msa0381090:CDS |
AAGGAGGAATAGCACCTTCA+CGG | 0.530668 | 3_1:-83066949 | None:intergenic |
GCAGTCACTGAAAGCGGAAG+AGG | 0.534106 | 3_1:-83066087 | None:intergenic |
AAAGGAGCAATTGGAAGATG+TGG | 0.538963 | 3_1:+83066563 | Msa0381090:CDS |
AGGACGGCGTTGGTGGAGGA+AGG | 0.544626 | 3_1:+83066809 | Msa0381090:CDS |
AGGAGGGATTCCGGTGTTGG+TGG | 0.550459 | 3_1:+83066829 | Msa0381090:CDS |
ATGGTGAAAGCTTTGAAGAC+AGG | 0.551125 | 3_1:+83066476 | Msa0381090:CDS |
TGTGATGAGCGTGTTGGTGA+CGG | 0.551202 | 3_1:+83066775 | Msa0381090:CDS |
TGCAGTTGAAGATCCATCCC+CGG | 0.553429 | 3_1:-83066368 | None:intergenic |
TAGTATAAATTATGCTAGCT+TGG | 0.553785 | 3_1:+83069162 | Msa0381090:three_prime_UTR |
TCCGCCATTAATTCAACCAA+AGG | 0.559491 | 3_1:-83066719 | None:intergenic |
TGAAGATCCATCCCCGGCGA+CGG | 0.564290 | 3_1:-83066362 | None:intergenic |
TCGAAAACGGAGGAATCCGC+GGG | 0.567283 | 3_1:+83066612 | Msa0381090:CDS |
ACAAAGCTTCTTCGTTACAA+AGG | 0.569110 | 3_1:-83069129 | None:intergenic |
TCCACAATCTCCACCAACAC+CGG | 0.569993 | 3_1:-83066839 | None:intergenic |
TACCATTCGCGCCAAAGACA+AGG | 0.571154 | 3_1:+83066994 | Msa0381090:CDS |
AATCAACGGTTTAATAGCGC+CGG | 0.573314 | 3_1:-83066324 | None:intergenic |
CTCGAAAACGGAGGAATCCG+CGG | 0.580066 | 3_1:+83066611 | Msa0381090:CDS |
GATTCTGGTTTCGGTTGTAG+TGG | 0.584774 | 3_1:-83066135 | None:intergenic |
GAGCACAAAGGATATCTGGT+AGG | 0.585677 | 3_1:-83069020 | None:intergenic |
GGTTGTAGTGGTGAATTCGG+TGG | 0.586585 | 3_1:-83066123 | None:intergenic |
GCCTTTGGTTGAATTAATGG+CGG | 0.592649 | 3_1:+83066718 | Msa0381090:CDS |
GAATATGAGTTATCGAGTAA+TGG | 0.593225 | 3_1:+83066922 | Msa0381090:CDS |
CGGAAGCGCATGTAATGAGA+AGG | 0.594684 | 3_1:-83066163 | None:intergenic |
GTTAGATTGTTGGAGTACAT+TGG | 0.596753 | 3_1:-83069044 | None:intergenic |
ACTGTCGCAGTCACTGAAAG+CGG | 0.601709 | 3_1:-83066093 | None:intergenic |
CGCATGTAATGAGAAGGCGT+TGG | 0.608908 | 3_1:-83066157 | None:intergenic |
GGTTGGGACGCAGAGACAGA+AGG | 0.611749 | 3_1:+83066862 | Msa0381090:CDS |
AGCACAAAGGATATCTGGTA+GGG | 0.612741 | 3_1:-83069019 | None:intergenic |
GTAACGAATTACGTAATGGA+AGG | 0.615430 | 3_1:+83066041 | Msa0381090:exon |
ATTCCGACGAACTCATTCGC+CGG | 0.620409 | 3_1:+83066192 | Msa0381090:CDS |
GACAGGCACTCCAACTGCGA+AGG | 0.621740 | 3_1:+83066493 | Msa0381090:CDS |
GTTGATTAGAGGAAAAGTGA+TGG | 0.624006 | 3_1:-83065989 | None:intergenic |
GACTGAGAAAGAGAAACCAA+AGG | 0.629876 | 3_1:-83066968 | None:intergenic |
TATTTATGAGGCACGTACAG+TGG | 0.637169 | 3_1:-83068986 | None:intergenic |
GATGATAAAAGGGAAATCAA+CGG | 0.645026 | 3_1:-83066338 | None:intergenic |
GCAGAGACAGAAGGAAATTG+CGG | 0.654422 | 3_1:+83066871 | Msa0381090:CDS |
CAACCGGCGAATGAGTTCGT+CGG | 0.657343 | 3_1:-83066195 | None:intergenic |
GAGTACATTGGTGAGCACAA+AGG | 0.660268 | 3_1:-83069032 | None:intergenic |
TGGTGACGGTTGTGGAAGCG+AGG | 0.674684 | 3_1:+83066789 | Msa0381090:CDS |
GAGACAGAAGGAAATTGCGG+CGG | 0.675465 | 3_1:+83066874 | Msa0381090:CDS |
GGTGTTGGTGGAGATTGTGG+AGG | 0.676028 | 3_1:+83066841 | Msa0381090:CDS |
GAAAGAGAACAAAATTAGAG+CGG | 0.684942 | 3_1:+83066676 | Msa0381090:CDS |
GGATTTGGATTCGTACATGG+TGG | 0.694539 | 3_1:+83066739 | Msa0381090:CDS |
AGCGTATGTGATGAGCGTGT+TGG | 0.695671 | 3_1:+83066769 | Msa0381090:CDS |
TGAGAAAGAGAAACCAAAGG+AGG | 0.707414 | 3_1:-83066965 | None:intergenic |
TCTATATTATAAAGTGAACG+TGG | 0.709631 | 3_1:-83065965 | None:intergenic |
GTGAACCTTCTCGAAAACGG+AGG | 0.712449 | 3_1:+83066602 | Msa0381090:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAATATATTTTTTTTTGACA+TGG | + | chr3_1:83068802-83068821 | Msa0381090:intron | 10.0% |
!!! | AATATATTTTTTTTTGACAT+GGG | + | chr3_1:83068803-83068822 | Msa0381090:intron | 10.0% |
!!! | AAATTTTACTTTTACTGTAT+TGG | + | chr3_1:83067247-83067266 | Msa0381090:intron | 15.0% |
!!! | TTTCTTTTTTAAAGATTTGA+TGG | + | chr3_1:83067325-83067344 | Msa0381090:intron | 15.0% |
!!! | TTCTTTTTTAAAGATTTGAT+GGG | + | chr3_1:83067326-83067345 | Msa0381090:intron | 15.0% |
!! | AAAAGTAATTAAAACTCAAA+TGG | + | chr3_1:83067667-83067686 | Msa0381090:intron | 15.0% |
!!! | TAATAATATTCTTTTTTTGG+TGG | + | chr3_1:83067777-83067796 | Msa0381090:intron | 15.0% |
!!! | TCTAAATATTATTTTCCTAA+GGG | + | chr3_1:83068005-83068024 | Msa0381090:intron | 15.0% |
!!! | CATTTTGAAACAAATTTTTT+TGG | - | chr3_1:83068102-83068121 | None:intergenic | 15.0% |
!! | AAATTATCTTAATCAACTAT+TGG | - | chr3_1:83068239-83068258 | None:intergenic | 15.0% |
!! | AATAGTTGATTAAGATAATT+TGG | + | chr3_1:83068238-83068257 | Msa0381090:intron | 15.0% |
!!! | TTTACATCATTTTTTTTGAA+AGG | - | chr3_1:83068549-83068568 | None:intergenic | 15.0% |
!!! | TGATATTTTCTTTTCATCAA+TGG | + | chr3_1:83067289-83067308 | Msa0381090:intron | 20.0% |
!!! | TCTTTTTTAAAGATTTGATG+GGG | + | chr3_1:83067327-83067346 | Msa0381090:intron | 20.0% |
!!! | TTATAAAGTGTGTTTTATTG+AGG | + | chr3_1:83067526-83067545 | Msa0381090:intron | 20.0% |
!! | ATATGTAACGTATACATATA+TGG | + | chr3_1:83067691-83067710 | Msa0381090:intron | 20.0% |
!! | ATTATGTAGAATTGATGTTT+GGG | + | chr3_1:83067980-83067999 | Msa0381090:intron | 20.0% |
!!! | GTCTAAATATTATTTTCCTA+AGG | + | chr3_1:83068004-83068023 | Msa0381090:intron | 20.0% |
!! | GTAACATAGTATTAATTGAA+GGG | - | chr3_1:83068176-83068195 | None:intergenic | 20.0% |
!! | TGTAACATAGTATTAATTGA+AGG | - | chr3_1:83068177-83068196 | None:intergenic | 20.0% |
!! | TGATTATGTTAAACTTACAA+AGG | - | chr3_1:83068436-83068455 | None:intergenic | 20.0% |
! | TCTATATTATAAAGTGAACG+TGG | - | chr3_1:83065968-83065987 | None:intergenic | 25.0% |
!! | CAAGTATATATGTTGATTAG+AGG | - | chr3_1:83066003-83066022 | None:intergenic | 25.0% |
!! | TTTTTGTTGATCAATAGAAG+AGG | - | chr3_1:83066237-83066256 | None:intergenic | 25.0% |
!!! | ACGATTTTCTGATTTGTTTT+TGG | - | chr3_1:83066288-83066307 | None:intergenic | 25.0% |
!!! | ATTTTATACGGTGTTGAATA+AGG | - | chr3_1:83067607-83067626 | None:intergenic | 25.0% |
! | GACAATGCATAATATATTCA+AGG | - | chr3_1:83067824-83067843 | None:intergenic | 25.0% |
! | CATTATGTAGAATTGATGTT+TGG | + | chr3_1:83067979-83067998 | Msa0381090:intron | 25.0% |
!! | TATTATTTTCCTAAGGGTTA+AGG | + | chr3_1:83068011-83068030 | Msa0381090:intron | 25.0% |
!!! | AAACGACACTCATTTTAAAA+CGG | - | chr3_1:83068076-83068095 | None:intergenic | 25.0% |
! | GAAAATTGATCTACTCTAAA+TGG | + | chr3_1:83068388-83068407 | Msa0381090:intron | 25.0% |
! | GTCAAAAAAATTATGCAAAG+TGG | - | chr3_1:83068581-83068600 | None:intergenic | 25.0% |
!!! | CTTTGCATAATTTTTTTGAC+AGG | + | chr3_1:83068581-83068600 | Msa0381090:intron | 25.0% |
!!! | TATTTTGATTTCGTGTCTAA+TGG | + | chr3_1:83068848-83068867 | Msa0381090:intron | 25.0% |
! | GGTTTATGTTGATATTTATG+AGG | - | chr3_1:83069001-83069020 | None:intergenic | 25.0% |
!!! | TATACAAGTTGATGCTTTTA+GGG | - | chr3_1:83069105-83069124 | None:intergenic | 25.0% |
!!! | ATATACAAGTTGATGCTTTT+AGG | - | chr3_1:83069106-83069125 | None:intergenic | 25.0% |
! | TAGTATAAATTATGCTAGCT+TGG | + | chr3_1:83069162-83069181 | Msa0381090:three_prime_UTR | 25.0% |
TATCGTAACGAATTACGTAA+TGG | + | chr3_1:83066037-83066056 | Msa0381090:exon | 30.0% | |
TCAACAAAAACAAGCTACAA+TGG | + | chr3_1:83066247-83066266 | Msa0381090:CDS | 30.0% | |
GATGATAAAAGGGAAATCAA+CGG | - | chr3_1:83066341-83066360 | None:intergenic | 30.0% | |
AAAGAGATTATCACTTCTTC+TGG | + | chr3_1:83066440-83066459 | Msa0381090:CDS | 30.0% | |
GAAAGAGAACAAAATTAGAG+CGG | + | chr3_1:83066676-83066695 | Msa0381090:CDS | 30.0% | |
GAATATGAGTTATCGAGTAA+TGG | + | chr3_1:83066922-83066941 | Msa0381090:CDS | 30.0% | |
TTGTAAACTAACCTTGTCTT+TGG | - | chr3_1:83067008-83067027 | None:intergenic | 30.0% | |
CATAATATATTCAAGGTCTG+AGG | - | chr3_1:83067817-83067836 | None:intergenic | 30.0% | |
!! | TTTAAAACGGAGAGAGTATT+TGG | - | chr3_1:83068063-83068082 | None:intergenic | 30.0% |
!! | TTCCTTAATTTGTGTGCAAT+TGG | + | chr3_1:83068295-83068314 | Msa0381090:intron | 30.0% |
AACCAATTGCACACAAATTA+AGG | - | chr3_1:83068300-83068319 | None:intergenic | 30.0% | |
TAACAGCGATACATAGTTAA+TGG | + | chr3_1:83069063-83069082 | Msa0381090:three_prime_UTR | 30.0% | |
! | TGAACGTGGAAAAGAGATTT+TGG | - | chr3_1:83065954-83065973 | None:intergenic | 35.0% |
GTTGATTAGAGGAAAAGTGA+TGG | - | chr3_1:83065992-83066011 | None:intergenic | 35.0% | |
! | GTAACGAATTACGTAATGGA+AGG | + | chr3_1:83066041-83066060 | Msa0381090:exon | 35.0% |
GAGTTCGTCGGAATAATTAT+CGG | - | chr3_1:83066186-83066205 | None:intergenic | 35.0% | |
AATGAAGATCGAGAATCAAC+CGG | - | chr3_1:83066214-83066233 | None:intergenic | 35.0% | |
! | TATTTTCATCGCATAGTGAG+AGG | - | chr3_1:83066421-83066440 | None:intergenic | 35.0% |
TCACAGACAGAAGAGAATAA+AGG | + | chr3_1:83066545-83066564 | Msa0381090:CDS | 35.0% | |
GAAGAGAATAAAGGAGCAAT+TGG | + | chr3_1:83066554-83066573 | Msa0381090:CDS | 35.0% | |
GAAGCCTTTGGTTGAATTAA+TGG | + | chr3_1:83066715-83066734 | Msa0381090:CDS | 35.0% | |
TACAACTCTTCATGTTTACG+CGG | + | chr3_1:83067023-83067042 | Msa0381090:intron | 35.0% | |
TGCAATTTGCAATTGCAAGA+TGG | - | chr3_1:83067076-83067095 | None:intergenic | 35.0% | |
!!! | ATTCTTTTTTTGGTGGTGTC+CGG | + | chr3_1:83067784-83067803 | Msa0381090:intron | 35.0% |
!! | AAGCGACACTCATTTTGAAA+CGG | + | chr3_1:83068321-83068340 | Msa0381090:intron | 35.0% |
! | TTGTTGATTGTTCCTCTTCA+TGG | + | chr3_1:83068909-83068928 | Msa0381090:intron | 35.0% |
! | TGTTGATTGTTCCTCTTCAT+GGG | + | chr3_1:83068910-83068929 | Msa0381090:intron | 35.0% |
AGACACTAATAGAGCTTCTA+CGG | + | chr3_1:83068944-83068963 | Msa0381090:CDS | 35.0% | |
GTTAGATTGTTGGAGTACAT+TGG | - | chr3_1:83069047-83069066 | None:intergenic | 35.0% | |
ATGTATCGCTGTTAGATTGT+TGG | - | chr3_1:83069057-83069076 | None:intergenic | 35.0% | |
ACAAAGCTTCTTCGTTACAA+AGG | - | chr3_1:83069132-83069151 | None:intergenic | 35.0% | |
!! | CTTAGTATGCTTTGCTTTTC+TGG | + | chr3_1:83069193-83069212 | Msa0381090:three_prime_UTR | 35.0% |
TTCGGTTGTAGTGGTGAATT+CGG | - | chr3_1:83066129-83066148 | None:intergenic | 40.0% | |
AATCAACGGTTTAATAGCGC+CGG | - | chr3_1:83066327-83066346 | None:intergenic | 40.0% | |
TTCTGGTGCGATTAAACCTA+TGG | + | chr3_1:83066457-83066476 | Msa0381090:CDS | 40.0% | |
GTCTTCAAAGCTTTCACCAT+AGG | - | chr3_1:83066476-83066495 | None:intergenic | 40.0% | |
!! | ATGGTGAAAGCTTTGAAGAC+AGG | + | chr3_1:83066476-83066495 | Msa0381090:CDS | 40.0% |
AAAGGAGCAATTGGAAGATG+TGG | + | chr3_1:83066563-83066582 | Msa0381090:CDS | 40.0% | |
TTGGTGAACCTTCTCGAAAA+CGG | + | chr3_1:83066599-83066618 | Msa0381090:CDS | 40.0% | |
AAAATTAGAGCGGTGAAAGC+TGG | + | chr3_1:83066686-83066705 | Msa0381090:CDS | 40.0% | |
AAATTAGAGCGGTGAAAGCT+GGG | + | chr3_1:83066687-83066706 | Msa0381090:CDS | 40.0% | |
GCCTTTGGTTGAATTAATGG+CGG | + | chr3_1:83066718-83066737 | Msa0381090:CDS | 40.0% | |
TCCGCCATTAATTCAACCAA+AGG | - | chr3_1:83066722-83066741 | None:intergenic | 40.0% | |
!! | GGTTGAATTAATGGCGGATT+TGG | + | chr3_1:83066724-83066743 | Msa0381090:CDS | 40.0% |
TGAGAAAGAGAAACCAAAGG+AGG | - | chr3_1:83066968-83066987 | None:intergenic | 40.0% | |
GACTGAGAAAGAGAAACCAA+AGG | - | chr3_1:83066971-83066990 | None:intergenic | 40.0% | |
TTGGTTTCTCTTTCTCAGTC+CGG | + | chr3_1:83066971-83066990 | Msa0381090:CDS | 40.0% | |
TGGAAGAATTACTGCTGACA+TGG | - | chr3_1:83067056-83067075 | None:intergenic | 40.0% | |
ATTTGGATGAGCACAATGCA+TGG | - | chr3_1:83068046-83068065 | None:intergenic | 40.0% | |
!!! | GACACTCATTTTGAAACGGA+GGG | + | chr3_1:83068325-83068344 | Msa0381090:intron | 40.0% |
TGATTTCGTGTCTAATGGTG+TGG | + | chr3_1:83068853-83068872 | Msa0381090:intron | 40.0% | |
GTTGATTGTTCCTCTTCATG+GGG | + | chr3_1:83068911-83068930 | Msa0381090:intron | 40.0% | |
TATTTATGAGGCACGTACAG+TGG | - | chr3_1:83068989-83069008 | None:intergenic | 40.0% | |
AGCACAAAGGATATCTGGTA+GGG | - | chr3_1:83069022-83069041 | None:intergenic | 40.0% | |
!!! | CAAGTTGATGCTTTTAGGGT+GGG | - | chr3_1:83069101-83069120 | None:intergenic | 40.0% |
!!! | ACAAGTTGATGCTTTTAGGG+TGG | - | chr3_1:83069102-83069121 | None:intergenic | 40.0% |
!! | GATTCTGGTTTCGGTTGTAG+TGG | - | chr3_1:83066138-83066157 | None:intergenic | 45.0% |
!! | AAGGCGTTGGATTCTGGTTT+CGG | - | chr3_1:83066147-83066166 | None:intergenic | 45.0% |
!! | AATGAGAAGGCGTTGGATTC+TGG | - | chr3_1:83066153-83066172 | None:intergenic | 45.0% |
TGGAAGATGTGGAGCAATTC+CGG | + | chr3_1:83066574-83066593 | Msa0381090:CDS | 45.0% | |
!!! | TTGACGCATCTTTTTTCCCG+CGG | - | chr3_1:83066631-83066650 | None:intergenic | 45.0% |
CGGGAAAAAAGATGCGTCAA+CGG | + | chr3_1:83066631-83066650 | Msa0381090:CDS | 45.0% | |
AGCTGGGATAATGAAGCCTT+TGG | + | chr3_1:83066703-83066722 | Msa0381090:CDS | 45.0% | |
GGATTTGGATTCGTACATGG+TGG | + | chr3_1:83066739-83066758 | Msa0381090:CDS | 45.0% | |
GCAGAGACAGAAGGAAATTG+CGG | + | chr3_1:83066871-83066890 | Msa0381090:CDS | 45.0% | |
AAGGAGGAATAGCACCTTCA+CGG | - | chr3_1:83066952-83066971 | None:intergenic | 45.0% | |
!! | TGAAGGTGCTATTCCTCCTT+TGG | + | chr3_1:83066952-83066971 | Msa0381090:CDS | 45.0% |
!!! | TTTTTGGTGGTGTCCGGATT+CGG | + | chr3_1:83067790-83067809 | Msa0381090:intron | 45.0% |
TTACCAACTGAGCTAGCTCA+CGG | + | chr3_1:83067845-83067864 | Msa0381090:intron | 45.0% | |
AAGGACATGCCTTAACCCTT+AGG | - | chr3_1:83068023-83068042 | None:intergenic | 45.0% | |
!!! | CGACACTCATTTTGAAACGG+AGG | + | chr3_1:83068324-83068343 | Msa0381090:intron | 45.0% |
ACAGTGGCATTGCTAGATCT+TGG | - | chr3_1:83068973-83068992 | None:intergenic | 45.0% | |
GAGCACAAAGGATATCTGGT+AGG | - | chr3_1:83069023-83069042 | None:intergenic | 45.0% | |
TGGTGAGCACAAAGGATATC+TGG | - | chr3_1:83069027-83069046 | None:intergenic | 45.0% | |
GAGTACATTGGTGAGCACAA+AGG | - | chr3_1:83069035-83069054 | None:intergenic | 45.0% | |
!!! | TATAAATAACATATTTTATA+CGG | - | chr3_1:83067619-83067638 | None:intergenic | 5.0% |
!!! | TTTTAATAATATTCTTTTTT+TGG | + | chr3_1:83067774-83067793 | Msa0381090:intron | 5.0% |
!! | ATTAAAGAAAAAATAATATT+TGG | - | chr3_1:83068206-83068225 | None:intergenic | 5.0% |
!! | AAATAAATAAATCTAATAAA+AGG | - | chr3_1:83068488-83068507 | None:intergenic | 5.0% |
ACTGTCGCAGTCACTGAAAG+CGG | - | chr3_1:83066096-83066115 | None:intergenic | 50.0% | |
GGTTGTAGTGGTGAATTCGG+TGG | - | chr3_1:83066126-83066145 | None:intergenic | 50.0% | |
! | CGCATGTAATGAGAAGGCGT+TGG | - | chr3_1:83066160-83066179 | None:intergenic | 50.0% |
! | CGGAAGCGCATGTAATGAGA+AGG | - | chr3_1:83066166-83066185 | None:intergenic | 50.0% |
ATTCCGACGAACTCATTCGC+CGG | + | chr3_1:83066192-83066211 | Msa0381090:CDS | 50.0% | |
CGGCGACGGTGATGATAAAA+GGG | - | chr3_1:83066351-83066370 | None:intergenic | 50.0% | |
! | CCTTTTATCATCACCGTCGC+CGG | + | chr3_1:83066349-83066368 | Msa0381090:CDS | 50.0% |
! | CTTTTATCATCACCGTCGCC+GGG | + | chr3_1:83066350-83066369 | Msa0381090:CDS | 50.0% |
! | TTTTATCATCACCGTCGCCG+GGG | + | chr3_1:83066351-83066370 | Msa0381090:CDS | 50.0% |
TGCAGTTGAAGATCCATCCC+CGG | - | chr3_1:83066371-83066390 | None:intergenic | 50.0% | |
ATGTGGAGCAATTCCGGCAT+TGG | + | chr3_1:83066580-83066599 | Msa0381090:CDS | 50.0% | |
TCGAGAAGGTTCACCAATGC+CGG | - | chr3_1:83066596-83066615 | None:intergenic | 50.0% | |
GTGAACCTTCTCGAAAACGG+AGG | + | chr3_1:83066602-83066621 | Msa0381090:CDS | 50.0% | |
!! | GGATTCCTCCGTTTTCGAGA+AGG | - | chr3_1:83066610-83066629 | None:intergenic | 50.0% |
! | GGCGGATTTGGATTCGTACA+TGG | + | chr3_1:83066736-83066755 | Msa0381090:CDS | 50.0% |
AGCGTATGTGATGAGCGTGT+TGG | + | chr3_1:83066769-83066788 | Msa0381090:CDS | 50.0% | |
! | TGTGATGAGCGTGTTGGTGA+CGG | + | chr3_1:83066775-83066794 | Msa0381090:CDS | 50.0% |
TCCACAATCTCCACCAACAC+CGG | - | chr3_1:83066842-83066861 | None:intergenic | 50.0% | |
TTGGTGGAGATTGTGGAGGT+TGG | + | chr3_1:83066845-83066864 | Msa0381090:CDS | 50.0% | |
TGGTGGAGATTGTGGAGGTT+GGG | + | chr3_1:83066846-83066865 | Msa0381090:CDS | 50.0% | |
GAGACAGAAGGAAATTGCGG+CGG | + | chr3_1:83066874-83066893 | Msa0381090:CDS | 50.0% | |
TACCATTCGCGCCAAAGACA+AGG | + | chr3_1:83066994-83067013 | Msa0381090:CDS | 50.0% | |
AACCTTGTCTTTGGCGCGAA+TGG | - | chr3_1:83066999-83067018 | None:intergenic | 50.0% | |
! | GTGAGCTAGCTCAGTTGGTA+AGG | - | chr3_1:83067846-83067865 | None:intergenic | 50.0% |
GGATGAGCACAATGCATGGA+AGG | - | chr3_1:83068042-83068061 | None:intergenic | 50.0% | |
GCAGTCACTGAAAGCGGAAG+AGG | - | chr3_1:83066090-83066109 | None:intergenic | 55.0% | |
CAACCGGCGAATGAGTTCGT+CGG | - | chr3_1:83066198-83066217 | None:intergenic | 55.0% | |
CGTCTCAGAATCGCCAAAGC+CGG | + | chr3_1:83066305-83066324 | Msa0381090:CDS | 55.0% | |
!! | CGGTTTAATAGCGCCGGCTT+TGG | - | chr3_1:83066321-83066340 | None:intergenic | 55.0% |
CCGGCGACGGTGATGATAAA+AGG | - | chr3_1:83066352-83066371 | None:intergenic | 55.0% | |
GCTGCATTCTCCTTCGCAGT+TGG | - | chr3_1:83066506-83066525 | None:intergenic | 55.0% | |
CTCGAAAACGGAGGAATCCG+CGG | + | chr3_1:83066611-83066630 | Msa0381090:CDS | 55.0% | |
TCGAAAACGGAGGAATCCGC+GGG | + | chr3_1:83066612-83066631 | Msa0381090:CDS | 55.0% | |
!! | TCCGGTGTTGGTGGAGATTG+TGG | + | chr3_1:83066838-83066857 | Msa0381090:CDS | 55.0% |
!! | GGTGTTGGTGGAGATTGTGG+AGG | + | chr3_1:83066841-83066860 | Msa0381090:CDS | 55.0% |
CGAGTAATGGTCTGCCGTGA+AGG | + | chr3_1:83066935-83066954 | Msa0381090:CDS | 55.0% | |
GTCTTTGGCGCGAATGGTAC+CGG | - | chr3_1:83066993-83067012 | None:intergenic | 55.0% | |
! | CAAGGTCTGAGGTCCGAATC+CGG | - | chr3_1:83067806-83067825 | None:intergenic | 55.0% |
TCTCCGTGAGCTAGCTCAGT+TGG | - | chr3_1:83067851-83067870 | None:intergenic | 55.0% | |
GTTCCTCTTCATGGGGACAC+AGG | + | chr3_1:83068918-83068937 | Msa0381090:intron | 55.0% | |
CTACCTGTGTCCCCATGAAG+AGG | - | chr3_1:83068924-83068943 | None:intergenic | 55.0% | |
TGAAGATCCATCCCCGGCGA+CGG | - | chr3_1:83066365-83066384 | None:intergenic | 60.0% | |
GACAGGCACTCCAACTGCGA+AGG | + | chr3_1:83066493-83066512 | Msa0381090:CDS | 60.0% | |
!! | GAGCGTGTTGGTGACGGTTG+TGG | + | chr3_1:83066781-83066800 | Msa0381090:CDS | 60.0% |
!! | TGGTGACGGTTGTGGAAGCG+AGG | + | chr3_1:83066789-83066808 | Msa0381090:CDS | 60.0% |
GACGGTTGTGGAAGCGAGGA+CGG | + | chr3_1:83066793-83066812 | Msa0381090:CDS | 60.0% | |
GGTGGAGGAAGGAGGGATTC+CGG | + | chr3_1:83066820-83066839 | Msa0381090:CDS | 60.0% | |
GGAAGGAGGGATTCCGGTGT+TGG | + | chr3_1:83066826-83066845 | Msa0381090:CDS | 60.0% | |
! | AGGAGGGATTCCGGTGTTGG+TGG | + | chr3_1:83066829-83066848 | Msa0381090:CDS | 60.0% |
GGTTGGGACGCAGAGACAGA+AGG | + | chr3_1:83066862-83066881 | Msa0381090:CDS | 60.0% | |
ATCATCACCGTCGCCGGGGA+TGG | + | chr3_1:83066355-83066374 | Msa0381090:CDS | 65.0% | |
TGTGGAAGCGAGGACGGCGT+TGG | + | chr3_1:83066799-83066818 | Msa0381090:CDS | 65.0% | |
!! | AGGACGGCGTTGGTGGAGGA+AGG | + | chr3_1:83066809-83066828 | Msa0381090:CDS | 65.0% |
!! | ACGGCGTTGGTGGAGGAAGG+AGG | + | chr3_1:83066812-83066831 | Msa0381090:CDS | 65.0% |
!! | CGGCGTTGGTGGAGGAAGGA+GGG | + | chr3_1:83066813-83066832 | Msa0381090:CDS | 65.0% |
! | GGAAGCGAGGACGGCGTTGG+TGG | + | chr3_1:83066802-83066821 | Msa0381090:CDS | 70.0% |
!! | AGCGAGGACGGCGTTGGTGG+AGG | + | chr3_1:83066805-83066824 | Msa0381090:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_1 | gene | 83065951 | 83069248 | 83065951 | ID=Msa0381090;Name=Msa0381090 |
chr3_1 | mRNA | 83065951 | 83069248 | 83065951 | ID=Msa0381090-mRNA-1;Parent=Msa0381090;Name=Msa0381090-mRNA-1;_AED=0.02;_eAED=0.02;_QI=105|1|1|1|1|1|2|243|341 |
chr3_1 | exon | 83065951 | 83067015 | 83065951 | ID=Msa0381090-mRNA-1:exon:21260;Parent=Msa0381090-mRNA-1 |
chr3_1 | exon | 83068940 | 83069248 | 83068940 | ID=Msa0381090-mRNA-1:exon:21261;Parent=Msa0381090-mRNA-1 |
chr3_1 | five_prime_UTR | 83065951 | 83066055 | 83065951 | ID=Msa0381090-mRNA-1:five_prime_utr;Parent=Msa0381090-mRNA-1 |
chr3_1 | CDS | 83066056 | 83067015 | 83066056 | ID=Msa0381090-mRNA-1:cds;Parent=Msa0381090-mRNA-1 |
chr3_1 | CDS | 83068940 | 83069005 | 83068940 | ID=Msa0381090-mRNA-1:cds;Parent=Msa0381090-mRNA-1 |
chr3_1 | three_prime_UTR | 83069006 | 83069248 | 83069006 | ID=Msa0381090-mRNA-1:three_prime_utr;Parent=Msa0381090-mRNA-1 |
Gene Sequence |
Protein sequence |