AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0382630

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0382630 MtrunA17_Chr3g0137951 100.000 599 0 0 1 599 489 1087 0.0 1246
Msa0382630 MtrunA17_Chr3g0088821 77.537 601 132 2 1 599 479 1078 0.0 969
Msa0382630 MtrunA17_Chr8g0352231 77.038 601 135 2 1 599 479 1078 0.0 956
Msa0382630 MtrunA17_Chr4g0073711 70.199 604 151 7 1 599 459 1038 0.0 891
Msa0382630 MtrunA17_Chr2g0296991 70.747 629 140 9 1 599 430 1044 0.0 888
Msa0382630 MtrunA17_Chr2g0284211 69.934 602 167 7 1 599 389 979 0.0 873
Msa0382630 MtrunA17_Chr7g0267731 70.451 599 174 3 1 599 391 986 0.0 870
Msa0382630 MtrunA17_Chr1g0201731 70.346 607 163 6 1 599 499 1096 0.0 870
Msa0382630 MtrunA17_Chr8g0383701 68.771 602 182 4 1 599 497 1095 0.0 870
Msa0382630 MtrunA17_Chr8g0379241 68.491 603 171 8 1 599 404 991 0.0 860
Msa0382630 MtrunA17_Chr1g0183381 65.225 601 180 8 1 599 331 904 0.0 813
Msa0382630 MtrunA17_Chr3g0078671 61.120 607 225 7 1 599 446 1049 0.0 743
Msa0382630 MtrunA17_Chr8g0364641 57.214 603 220 7 1 599 413 981 0.0 733
Msa0382630 MtrunA17_Chr5g0410641 48.750 640 250 14 1 596 510 1115 0.0 588
Msa0382630 MtrunA17_Chr4g0039801 49.120 625 247 12 1 581 531 1128 0.0 586
Msa0382630 MtrunA17_Chr7g0269741 48.408 628 253 13 1 581 553 1156 0.0 566
Msa0382630 MtrunA17_Chr1g0165411 46.635 624 254 10 1 581 502 1089 0.0 551
Msa0382630 MtrunA17_Chr2g0297351 46.468 637 265 13 1 594 419 1022 0.0 551
Msa0382630 MtrunA17_Chr1g0165421 46.939 637 267 12 1 591 516 1127 0.0 548
Msa0382630 MtrunA17_Chr7g0274751 39.273 578 182 13 35 589 375 806 2.80e-117 367
Msa0382630 MtrunA17_Chr2g0322361 32.056 574 310 13 13 572 233 740 4.46e-82 273
Msa0382630 MtrunA17_Chr2g0322371 31.261 579 313 15 13 578 226 732 1.10e-78 263
Msa0382630 MtrunA17_Chr4g0025201 30.017 583 327 12 10 578 224 739 6.32e-74 251
Msa0382630 MtrunA17_Chr2g0322351 31.882 574 311 16 9 572 224 727 1.67e-73 249
Msa0382630 MtrunA17_Chr3g0102531 31.866 477 243 9 10 482 230 628 1.80e-67 233
Msa0382630 MtrunA17_Chr3g0102541 31.447 477 245 10 10 482 231 629 1.77e-66 230
Msa0382630 MtrunA17_Chr2g0322331 32.970 367 233 6 215 572 9 371 9.62e-57 196
Msa0382630 MtrunA17_Chr0c03g0490021 69.672 122 37 0 428 549 1 122 3.55e-53 178
Msa0382630 MtrunA17_Chr7g0252781 91.667 84 7 0 516 599 6 89 2.27e-45 155
Msa0382630 MtrunA17_Chr4g0046401 32.174 345 222 7 235 572 391 730 4.38e-45 170
Msa0382630 MtrunA17_Chr4g0046401 42.568 148 84 1 14 161 233 379 5.00e-32 131
Msa0382630 MtrunA17_Chr3g0126641 40.598 234 94 8 97 309 1 210 1.37e-44 157
Msa0382630 MtrunA17_Chr3g0102551 42.581 155 86 1 10 161 239 393 2.38e-38 150
Msa0382630 MtrunA17_Chr3g0102551 33.962 212 135 3 273 482 426 634 4.28e-34 138
Msa0382630 MtrunA17_Chr1g0186381 26.836 354 237 9 236 576 390 734 1.74e-37 148
Msa0382630 MtrunA17_Chr1g0186381 41.875 160 92 1 2 161 221 379 6.14e-33 134
Msa0382630 MtrunA17_Chr3g0077511 26.970 330 227 8 237 557 369 693 7.11e-34 137
Msa0382630 MtrunA17_Chr3g0077511 45.522 134 73 0 38 171 232 365 2.29e-30 126
Msa0382630 MtrunA17_Chr2g0298581 26.994 326 228 6 237 556 369 690 3.29e-33 135
Msa0382630 MtrunA17_Chr2g0298581 45.312 128 70 0 32 159 226 353 2.67e-28 120
Msa0382630 MtrunA17_Chr3g0095791 26.586 331 223 8 237 556 368 689 2.00e-31 129
Msa0382630 MtrunA17_Chr3g0095791 40.411 146 79 1 14 159 215 352 4.74e-29 122
Msa0382630 MtrunA17_Chr8g0355061 89.474 57 6 0 428 484 1 57 3.14e-30 112
Msa0382630 MtrunA17_Chr2g0307191 26.524 328 223 7 240 557 372 691 5.13e-30 125
Msa0382630 MtrunA17_Chr2g0307191 41.096 146 78 1 14 159 216 353 2.17e-29 123
Msa0382630 MtrunA17_Chr2g0322341 44.348 115 60 1 13 127 233 343 8.16e-26 109
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0382630 AT4G32410.1 86.957 598 77 1 1 597 483 1080 0.0 1086
Msa0382630 AT2G25540.1 85.959 584 82 0 1 584 463 1046 0.0 1069
Msa0382630 AT5G05170.1 77.371 601 132 3 1 599 467 1065 0.0 981
Msa0382630 AT5G44030.3 69.952 629 157 6 1 599 144 770 0.0 912
Msa0382630 AT5G44030.1 69.952 629 157 6 1 599 423 1049 0.0 912
Msa0382630 AT5G44030.2 69.952 629 157 6 1 599 452 1078 0.0 911
Msa0382630 AT5G17420.1 71.144 603 148 7 1 599 446 1026 0.0 893
Msa0382630 AT2G21770.1 68.534 607 173 6 1 599 490 1086 0.0 874
Msa0382630 AT4G18780.1 69.732 598 169 6 1 595 392 980 0.0 868
Msa0382630 AT5G64740.1 67.816 609 177 7 1 599 484 1083 0.0 855
Msa0382630 AT5G09870.1 67.928 608 175 6 1 599 472 1068 0.0 853
Msa0382630 AT4G39350.1 67.554 601 190 3 1 599 485 1082 0.0 835
Msa0382630 AT3G03050.1 50.883 623 237 15 1 581 536 1131 0.0 584
Msa0382630 AT5G16910.1 49.438 623 243 14 1 581 539 1131 0.0 578
Msa0382630 AT1G02730.1 48.089 628 259 11 1 581 561 1168 0.0 575
Msa0382630 AT2G33100.2 48.077 624 256 13 1 581 426 1024 0.0 569
Msa0382630 AT2G33100.1 48.077 624 256 13 1 581 426 1024 0.0 569
Msa0382630 AT1G32180.1 45.920 625 263 12 1 579 371 966 0.0 550
Msa0382630 AT1G32180.2 45.920 625 263 12 1 579 371 966 0.0 550
Msa0382630 AT4G38190.1 46.942 605 272 10 1 581 513 1092 0.0 546
Msa0382630 AT2G32620.4 32.447 564 302 12 10 553 130 634 1.16e-79 265
Msa0382630 AT2G32620.1 32.447 564 302 12 10 553 226 730 1.05e-78 264
Msa0382630 AT2G32610.1 30.988 597 333 15 2 577 219 757 5.62e-78 262
Msa0382630 AT2G32530.1 30.268 598 331 13 3 577 219 753 1.20e-77 261
Msa0382630 AT4G15290.1 30.653 597 332 15 3 577 219 755 9.58e-76 256
Msa0382630 AT4G15320.3 31.119 572 311 14 3 551 219 730 3.20e-75 255
Msa0382630 AT4G15320.5 31.119 572 311 14 3 551 219 730 3.74e-75 254
Msa0382630 AT4G15320.4 31.119 572 311 14 3 551 234 745 5.52e-75 254
Msa0382630 AT2G32540.1 30.835 587 320 13 14 577 230 753 1.81e-73 250
Msa0382630 AT2G32620.3 35.176 398 200 8 9 404 225 566 1.65e-67 231
Msa0382630 AT4G15320.2 29.468 526 245 13 2 477 218 667 8.91e-59 210
Msa0382630 AT2G32620.2 33.424 368 185 8 12 377 228 537 4.05e-56 199
Msa0382630 AT4G15320.1 29.767 514 235 13 18 481 277 714 1.94e-55 201
Msa0382630 AT4G23990.2 34.797 296 181 5 262 551 216 505 4.24e-45 168
Msa0382630 AT4G23990.2 44.970 169 89 3 13 177 43 211 1.19e-35 141
Msa0382630 AT4G23990.1 34.797 296 181 5 262 551 430 719 3.11e-44 168
Msa0382630 AT4G23990.1 44.970 169 89 3 13 177 257 425 3.97e-35 141
Msa0382630 AT4G24010.1 33.223 301 191 4 260 555 409 704 8.32e-43 164
Msa0382630 AT4G24010.1 47.273 165 83 3 13 173 238 402 1.69e-36 145
Msa0382630 AT4G24000.2 30.915 317 203 7 266 573 213 522 1.79e-42 160
Msa0382630 AT4G24000.2 45.238 168 83 3 13 177 43 204 2.72e-35 140
Msa0382630 AT4G24000.1 30.915 317 203 7 266 573 405 714 9.95e-42 161
Msa0382630 AT4G24000.1 45.509 167 82 3 13 176 235 395 1.01e-34 140
Msa0382630 AT1G55850.1 40.306 196 101 4 13 195 246 438 1.01e-34 140
Msa0382630 AT1G55850.1 36.275 204 123 4 275 475 420 619 9.72e-34 137

Find 196 sgRNAs with CRISPR-Local

Find 269 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCTTTCTTGAAGGGTCTTT+TGG 0.125595 3_1:-85282516 Msa0382630:CDS
CAATCTTGGGGTCCACTATT+TGG 0.164587 3_1:-85282578 Msa0382630:CDS
TTAGCAGGCATTGTCCTTTA+TGG 0.181426 3_1:-85283185 Msa0382630:CDS
AGATTGGTAACCACTGTTTA+TGG 0.193349 3_1:+85282595 None:intergenic
TATATCCTCCATATTAAATA+TGG 0.199338 3_1:+85284063 None:intergenic
CACCATTCCCATATTTAATA+TGG 0.200910 3_1:-85284071 Msa0382630:CDS
GAAAGCTCTTCTTTGCTATA+TGG 0.232926 3_1:-85282556 Msa0382630:CDS
GAAAGGTCAGGATGGTATTC+AGG 0.270878 3_1:-85284281 Msa0382630:CDS
CCCCAGATTGGATGGATCTA+TGG 0.288196 3_1:-85283375 Msa0382630:intron
TCAGGTGCTTCGGTGGGCCT+TGG 0.289335 3_1:-85283226 Msa0382630:CDS
CAGAATTGAAGTAGTGAAAA+TGG 0.304335 3_1:+85282892 None:intergenic
TGTGGTATGCAGGTGTTCTT+AGG 0.305393 3_1:-85285098 Msa0382630:intron
GGTGGAGAAACGAGCAGTTT+TGG 0.306946 3_1:-85282835 Msa0382630:CDS
CAATAATAGCAAAGCTCTTA+AGG 0.307530 3_1:-85284583 Msa0382630:CDS
CAATTTCCGCAGAGATTTGA+TGG 0.308394 3_1:-85284507 Msa0382630:CDS
TTCTATATTCTCTTTGTTGT+GGG 0.324824 3_1:-85282441 Msa0382630:CDS
CACCAACCATTGTTATTGTC+TGG 0.330309 3_1:-85282478 Msa0382630:CDS
GTACTTATTGTGAATTTGAT+AGG 0.341544 3_1:-85282641 Msa0382630:CDS
GGGCTTCTCAAAGTGCTTGC+AGG 0.342959 3_1:-85282770 Msa0382630:CDS
TTCATGATGGATCCTGCTTA+TGG 0.354746 3_1:-85284549 Msa0382630:CDS
TAAACAGTGGTTACCAATCT+TGG 0.356541 3_1:-85282592 Msa0382630:CDS
AAAGCTCTTCTTTGCTATAT+GGG 0.357334 3_1:-85282555 Msa0382630:CDS
AATTACTAAAACATTAATCT+TGG 0.357923 3_1:+85282000 None:intergenic
TTGATGTCTCTAAATCAAAA+AGG 0.370267 3_1:+85282314 None:intergenic
TCATTTATACCCTTTCTTGA+AGG 0.370848 3_1:-85282525 Msa0382630:CDS
CTACTTCAATTCTGGAGCTT+AGG 0.370914 3_1:-85282883 Msa0382630:CDS
CATTATTGTTAAGAGTTGTT+GGG 0.375779 3_1:-85284167 Msa0382630:CDS
GGATCATCCTGGAATGATTC+AGG 0.377094 3_1:-85285191 Msa0382630:intron
GCCACCTCGTCCGGCATTCA+AGG 0.383947 3_1:-85283283 Msa0382630:CDS
CAATTCTACAACTCTTCTTA+AGG 0.389540 3_1:-85283741 Msa0382630:CDS
CAACTCTTAACAATAATGTT+AGG 0.389603 3_1:+85284172 None:intergenic
ACATTATTGTTAAGAGTTGT+TGG 0.390179 3_1:-85284168 Msa0382630:CDS
CATTTATACCCTTTCTTGAA+GGG 0.394919 3_1:-85282524 Msa0382630:CDS
CTTAAGAAGAGTTGTAGAAT+TGG 0.397836 3_1:+85283742 None:intergenic
AAACAGTGGTTACCAATCTT+GGG 0.401254 3_1:-85282591 Msa0382630:CDS
GAACTGGTTGCTGTTTCAAT+AGG 0.402726 3_1:-85284243 Msa0382630:CDS
GGCCCTGTCTATGTGGGAAC+TGG 0.402866 3_1:-85284259 Msa0382630:CDS
CAGGTGCTTCGGTGGGCCTT+GGG 0.403218 3_1:-85283225 Msa0382630:CDS
GGCTGGAGCTATGAATGCTT+TGG 0.405899 3_1:-85284982 Msa0382630:intron
TGATCCCTGGGATTATTTCC+AGG 0.406836 3_1:+85285208 None:intergenic
CAAATAGTGGACCCCAAGAT+TGG 0.407938 3_1:+85282579 None:intergenic
CCCAAAAGACCCTTCAAGAA+AGG 0.413353 3_1:+85282515 None:intergenic
GTTGATACCACACTGACTAT+TGG 0.415397 3_1:+85282376 None:intergenic
TATTCTCTTTGTTGTGGGTG+AGG 0.416062 3_1:-85282436 Msa0382630:CDS
CTTCTATATTCTCTTTGTTG+TGG 0.423346 3_1:-85282442 Msa0382630:CDS
TTCAATAGGCAAGCTTTGTA+TGG 0.426485 3_1:-85284229 Msa0382630:CDS
ACTATTGGATGATGATTTGT+TGG 0.429140 3_1:+85282391 None:intergenic
CGTAATACCTGAATCATTCC+AGG 0.429868 3_1:+85285184 None:intergenic
CTGAGCTATACGTGTTCAAA+TGG 0.432318 3_1:-85282691 Msa0382630:CDS
AAGAAGAGCTTTCCAAATAG+TGG 0.434325 3_1:+85282566 None:intergenic
CTATTGCATGCCACCTCGTC+CGG 0.435125 3_1:-85283292 Msa0382630:CDS
AAGAGCTTGGAGAAGCGTTT+CGG 0.436107 3_1:-85283824 Msa0382630:CDS
CAATAGAGATCTTCCTTAGC+AGG 0.441321 3_1:-85283200 Msa0382630:CDS
AAGCAATGGGATTGAGGTAA+AGG 0.441416 3_1:+85283098 None:intergenic
TTCTTGTGATGTTGGAAGCC+TGG 0.450509 3_1:+85285005 None:intergenic
CCATTGTAGCCATACCATAA+AGG 0.451492 3_1:+85283171 None:intergenic
ACCGTCTCAATCAGGTGCTT+CGG 0.452266 3_1:-85283236 Msa0382630:CDS
CAACCAGTTCCCACATAGAC+AGG 0.454853 3_1:+85284256 None:intergenic
AGATCTTCCTCAGTCAAAAC+AGG 0.459144 3_1:+85284199 None:intergenic
CATGTCTTCTTTCCATAAGC+AGG 0.459266 3_1:+85284537 None:intergenic
AGCAATGGGATTGAGGTAAA+GGG 0.460663 3_1:+85283099 None:intergenic
CTTGGCCTGGAAATAATCCC+AGG 0.464926 3_1:-85285213 Msa0382630:CDS
TAGTGAAAATGGAGGTAAAG+AGG 0.465958 3_1:+85282903 None:intergenic
CTCCAGCCTTCTTGTGATGT+TGG 0.467134 3_1:+85284997 None:intergenic
ATATCCTCCATATTAAATAT+GGG 0.468622 3_1:+85284064 None:intergenic
TGTTGGGGTTCTAGAAAGAA+AGG 0.469786 3_1:-85284151 Msa0382630:CDS
GAGACGGTCTGAAAGATTGA+TGG 0.469848 3_1:+85283251 None:intergenic
GAAGCGTTTCGGACAGTCTC+CGG 0.470838 3_1:-85283813 Msa0382630:CDS
ACCAACCATTGTTATTGTCT+GGG 0.471579 3_1:-85282477 Msa0382630:CDS
TCTTTCAGACCGTCTCAATC+AGG 0.471616 3_1:-85283244 Msa0382630:CDS
CAAAGGCAAATGACGAAGAC+GGG 0.472073 3_1:-85282721 Msa0382630:CDS
GTCATTTGCCTTTGATGTAA+CGG 0.478885 3_1:+85282730 None:intergenic
CAGGATGGAACTCCTTGGCC+TGG 0.479035 3_1:-85285226 Msa0382630:CDS
GTTGTAGAATTGGTTGAAGG+TGG 0.481332 3_1:+85283752 None:intergenic
TCTGACTTCCCCAGATTGGA+TGG 0.481335 3_1:-85283383 Msa0382630:intron
CTATTGGATGATGATTTGTT+GGG 0.483405 3_1:+85282392 None:intergenic
ATTTAATATGGAGGATATAG+AGG 0.485050 3_1:-85284059 Msa0382630:CDS
AGAGTTGTAGAATTGGTTGA+AGG 0.490811 3_1:+85283749 None:intergenic
TGTGAATTTGATAGGTATTG+TGG 0.491287 3_1:-85282633 Msa0382630:CDS
GTCTCAATCAGGTGCTTCGG+TGG 0.494067 3_1:-85283233 Msa0382630:CDS
CTTCAATTCTGGAGCTTAGG+TGG 0.495786 3_1:-85282880 Msa0382630:CDS
CCAAAAGACCCTTCAAGAAA+GGG 0.497486 3_1:+85282516 None:intergenic
CCAGATCAACTTGAAAGGTC+AGG 0.497960 3_1:-85284293 Msa0382630:intron
CATGCATCTTAAACCCAGTC+AGG 0.499962 3_1:+85283334 None:intergenic
AGGCATTGTCCTTTATGGTA+TGG 0.500564 3_1:-85283180 Msa0382630:CDS
TTCACAATAAGTACTGTTGT+AGG 0.505494 3_1:+85282650 None:intergenic
ACGAGACACATAAACAAGCC+TGG 0.506083 3_1:+85285037 None:intergenic
GGAGGCTATGTGTTTCATGA+TGG 0.506640 3_1:-85284562 Msa0382630:CDS
GTTATGAAGACAAGACAGAA+TGG 0.508195 3_1:-85283694 Msa0382630:CDS
GGCTTCTCAAAGTGCTTGCA+GGG 0.510259 3_1:-85282769 Msa0382630:CDS
GCACACAGTACGCAAGCAAT+GGG 0.511664 3_1:+85283085 None:intergenic
CGACAAAGGAGTATATGATA+AGG 0.512710 3_1:+85281950 None:intergenic
TTTGTTGGGATCAGAGATGA+AGG 0.512730 3_1:+85282406 None:intergenic
TAGAAACAAGAATGCTATGC+AGG 0.514553 3_1:+85282205 None:intergenic
AAAGGTCAGGATGGTATTCA+GGG 0.519336 3_1:-85284280 Msa0382630:CDS
TCTAATGTCTCAGAAGAGCT+TGG 0.520171 3_1:-85283837 Msa0382630:CDS
TTAAGATGCATGCACGTGGT+TGG 0.524436 3_1:-85283323 Msa0382630:CDS
CCTTTATGGTATGGCTACAA+TGG 0.524681 3_1:-85283171 Msa0382630:CDS
CTCCATATTAAATATGGGAA+TGG 0.526287 3_1:+85284069 None:intergenic
GAGCTTAGGTGGAGTGGTGT+TGG 0.527750 3_1:-85282869 Msa0382630:CDS
TTATGAAGACAAGACAGAAT+GGG 0.529723 3_1:-85283693 Msa0382630:CDS
ATAAAGGACAATGCCTGCTA+AGG 0.530638 3_1:+85283187 None:intergenic
GATGAGGCCTCTCATGAGGC+TGG 0.531213 3_1:-85283145 Msa0382630:CDS
CAATGCAGGATGGAACTCCT+TGG 0.533087 3_1:-85285231 Msa0382630:CDS
GAAGAAGACAATATTGCGAT+TGG 0.533132 3_1:+85284461 None:intergenic
GATATAGAGGAGGGTGTCGA+AGG 0.533539 3_1:-85284046 Msa0382630:intron
GTGACTGAAGATATCCTGAC+TGG 0.534004 3_1:-85283348 Msa0382630:CDS
GTTTCTGCTGTCTTGACCAA+CGG 0.535214 3_1:-85284642 Msa0382630:CDS
TGGCAGGTTATGATGATGAA+AGG 0.538099 3_1:-85283865 Msa0382630:intron
ATTATTGTTAAGAGTTGTTG+GGG 0.538462 3_1:-85284166 Msa0382630:CDS
TATTCAGGGCCCTGTCTATG+TGG 0.539274 3_1:-85284266 Msa0382630:CDS
CCACCTCGTCCGGCATTCAA+GGG 0.540494 3_1:-85283282 Msa0382630:CDS
AGCACACAGTACGCAAGCAA+TGG 0.543002 3_1:+85283084 None:intergenic
CATATTAAATATGGGAATGG+TGG 0.544392 3_1:+85284072 None:intergenic
TATGGTATGGCTACAATGGA+AGG 0.544960 3_1:-85283167 Msa0382630:CDS
ATCATTCCAGGATGATCCCT+GGG 0.546093 3_1:+85285196 None:intergenic
TTCCAACATCACAAGAAGGC+TGG 0.547234 3_1:-85284999 Msa0382630:CDS
AATAATCCCAGGGATCATCC+TGG 0.549110 3_1:-85285202 Msa0382630:CDS
ACAAGGTGCAATGTGATGAT+TGG 0.550221 3_1:-85282106 Msa0382630:three_prime_UTR
TAGAATTGGTTGAAGGTGGA+AGG 0.551173 3_1:+85283756 None:intergenic
GTGGTGTTGGTATAGAAGAC+TGG 0.554915 3_1:-85282856 Msa0382630:CDS
GAACCCTTGAATGCCGGACG+AGG 0.555094 3_1:+85283279 None:intergenic
GTGTCTCGTGAAAAGCGACC+AGG 0.555283 3_1:-85285023 Msa0382630:CDS
CTGGGATTATTTCCAGGCCA+AGG 0.555806 3_1:+85285214 None:intergenic
CATTCCCATATTTAATATGG+AGG 0.558239 3_1:-85284068 Msa0382630:CDS
TCTCAATCAGGTGCTTCGGT+GGG 0.558685 3_1:-85283232 Msa0382630:CDS
GCAATCCACGTTATCAGTTG+TGG 0.559514 3_1:-85283716 Msa0382630:CDS
AAGGGTGGGAATAAGAAGTA+CGG 0.561091 3_1:-85284127 Msa0382630:CDS
ATTCTGGAGCTTAGGTGGAG+TGG 0.561581 3_1:-85282875 Msa0382630:CDS
ATTCAGGGCCCTGTCTATGT+GGG 0.562278 3_1:-85284265 Msa0382630:CDS
GGAGCAGAACCCTTGAATGC+CGG 0.564720 3_1:+85283273 None:intergenic
GTACGCAAGCAATGGGATTG+AGG 0.569333 3_1:+85283092 None:intergenic
CAGATGGCAATGAACTTCCC+AGG 0.570271 3_1:-85285055 Msa0382630:CDS
CGAGACACATAAACAAGCCT+GGG 0.571703 3_1:+85285038 None:intergenic
GAAGTACGGTGACAAGAAGA+GGG 0.571885 3_1:-85284113 Msa0382630:CDS
CTTGATGATCAGAGTTGTGT+TGG 0.572655 3_1:-85282026 Msa0382630:three_prime_UTR
AATCATTCCAGGATGATCCC+TGG 0.573033 3_1:+85285195 None:intergenic
AGAAGTACGGTGACAAGAAG+AGG 0.574021 3_1:-85284114 Msa0382630:CDS
TAAGTAACTTTGCTAGCATG+TGG 0.574212 3_1:-85282934 Msa0382630:CDS
ACAATAAGTACTGTTGTAGG+AGG 0.576226 3_1:+85282653 None:intergenic
TTTGTGAGAAGACAAAATGC+AGG 0.576962 3_1:+85283060 None:intergenic
AGACGGTCTGAAAGATTGAT+GGG 0.577367 3_1:+85283252 None:intergenic
GAAGATCTCTATTGAACCCA+AGG 0.579561 3_1:+85283209 None:intergenic
ATCTGCCAGATCAACTTGAA+AGG 0.584622 3_1:-85284298 Msa0382630:intron
AGGTGCAATGTGATGATTGG+TGG 0.585745 3_1:-85282103 Msa0382630:three_prime_UTR
GAATATAGAAGCAAGGAGAA+CGG 0.587222 3_1:+85282454 None:intergenic
CCCTTGAATGCCGGACGAGG+TGG 0.594733 3_1:+85283282 None:intergenic
AATTTGATAGGTATTGTGGC+TGG 0.596798 3_1:-85282629 Msa0382630:CDS
TCAAAGGCAAATGACGAAGA+CGG 0.596841 3_1:-85282722 Msa0382630:CDS
GCCCAGACAATAACAATGGT+TGG 0.597212 3_1:+85282476 None:intergenic
ATGGCTACAATGGAAGGATG+AGG 0.601544 3_1:-85283161 Msa0382630:CDS
TGTTGGGATCAGAGATGAAG+GGG 0.603228 3_1:+85282408 None:intergenic
ACGAGGTGGCATGCAATAGA+CGG 0.603755 3_1:+85283296 None:intergenic
ACAAAGAGAATATAGAAGCA+AGG 0.606102 3_1:+85282447 None:intergenic
TTGTTGGGATCAGAGATGAA+GGG 0.606995 3_1:+85282407 None:intergenic
CATAACCACAACTGATAACG+TGG 0.607386 3_1:+85283711 None:intergenic
GGTTCTAGAAAGAAAGGAAA+GGG 0.607535 3_1:-85284145 Msa0382630:CDS
TTTGAGAAGCCCTTGAAACA+CGG 0.610286 3_1:+85282781 None:intergenic
GAAGGATGAGGCCTCTCATG+AGG 0.613208 3_1:-85283149 Msa0382630:CDS
AAACAAATTTATTATTCCCG+AGG 0.615273 3_1:-85283040 Msa0382630:intron
AATATGGAGGATATAGAGGA+GGG 0.615452 3_1:-85284055 Msa0382630:CDS
GCCACCTTGCTCCATGAATG+TGG 0.615815 3_1:+85283778 None:intergenic
TCTAGAAAGAAAGGAAAGGG+TGG 0.618649 3_1:-85284142 Msa0382630:CDS
CTAGAAAGAAAGGAAAGGGT+GGG 0.618776 3_1:-85284141 Msa0382630:CDS
TGTTCTTAGGACATAGTGGA+GGG 0.619289 3_1:-85285085 Msa0382630:CDS
TAATATGGAGGATATAGAGG+AGG 0.620075 3_1:-85284056 Msa0382630:CDS
AACAGTGGTTACCAATCTTG+GGG 0.623077 3_1:-85282590 Msa0382630:CDS
ATTCAAAAGATATGCACCGT+TGG 0.623304 3_1:+85284626 None:intergenic
AGTGGAGGGCTTGATACAGA+TGG 0.624800 3_1:-85285071 Msa0382630:CDS
GAATATAGTTAAAGCAAACA+AGG 0.625898 3_1:-85282123 Msa0382630:three_prime_UTR
GGGTTCTAGAAAGAAAGGAA+AGG 0.630688 3_1:-85284146 Msa0382630:CDS
GTGTTCTTAGGACATAGTGG+AGG 0.631279 3_1:-85285086 Msa0382630:CDS
GCAATGGGATTGAGGTAAAG+GGG 0.636175 3_1:+85283100 None:intergenic
CAGGTGTTCTTAGGACATAG+TGG 0.638632 3_1:-85285089 Msa0382630:CDS
GCTGCCACATTCATGGAGCA+AGG 0.639358 3_1:-85283782 Msa0382630:CDS
ATCAACTTGAAAGGTCAGGA+TGG 0.639743 3_1:-85284289 Msa0382630:CDS
AGGCTTCCAACATCACAAGA+AGG 0.642291 3_1:-85285003 Msa0382630:CDS
CAAGACAGAATGGGGCAAAG+AGG 0.645256 3_1:-85283684 Msa0382630:intron
TATGAAGACAAGACAGAATG+GGG 0.646123 3_1:-85283692 Msa0382630:CDS
TTGGCCTGGAAATAATCCCA+GGG 0.648298 3_1:-85285212 Msa0382630:CDS
CAATAAGTACTGTTGTAGGA+GGG 0.656712 3_1:+85282654 None:intergenic
ATATAAGCCAGCCTCATGAG+AGG 0.657496 3_1:+85283138 None:intergenic
TAATAGCAAAGCTCTTAAGG+AGG 0.661440 3_1:-85284580 Msa0382630:CDS
ACCGAAGCACCTGATTGAGA+CGG 0.666058 3_1:+85283235 None:intergenic
GGGTTTAAGATGCATGCACG+TGG 0.666379 3_1:-85283327 Msa0382630:CDS
AACCAGTTCCCACATAGACA+GGG 0.673506 3_1:+85284257 None:intergenic
TCATCATCCAATAGTCAGTG+TGG 0.679111 3_1:-85282383 Msa0382630:CDS
AAGTACGGTGACAAGAAGAG+GGG 0.680559 3_1:-85284112 Msa0382630:CDS
TGACTGAAGATATCCTGACT+GGG 0.688722 3_1:-85283347 Msa0382630:CDS
GTGTTGGTATAGAAGACTGG+TGG 0.690105 3_1:-85282853 Msa0382630:CDS
AAAGGCAAATGACGAAGACG+GGG 0.691426 3_1:-85282720 Msa0382630:CDS
AACGGCCCAGACAATAACAA+TGG 0.695469 3_1:+85282472 None:intergenic
GCCACATTCATGGAGCAAGG+TGG 0.698768 3_1:-85283779 Msa0382630:CDS
AATTGAAGTAGTGAAAATGG+AGG 0.704707 3_1:+85282895 None:intergenic
ATATAAACAAGAATTCAGCA+TGG 0.707778 3_1:-85282277 Msa0382630:three_prime_UTR
TCAATGCCATCAAATCTCTG+CGG 0.757536 3_1:+85284501 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATATTTTTTTCTTTTGAA+GGG + chr3_1:85282821-85282840 None:intergenic 10.0%
!!! AAAATATTTTTTTCTTTTGA+AGG + chr3_1:85282822-85282841 None:intergenic 10.0%
!! TAAACTGAAAATAACAATAA+TGG + chr3_1:85282059-85282078 None:intergenic 15.0%
!!! AGTTTAGTTATATTATTTTG+TGG - chr3_1:85282073-85282092 Msa0382630:three_prime_UTR 15.0%
!! ATAAAATAAGAAGTTTCAAT+AGG + chr3_1:85282238-85282257 None:intergenic 15.0%
!!! AATATTTTTTTCTTTTGAAG+GGG + chr3_1:85282820-85282839 None:intergenic 15.0%
!! AATTACTAAAACATTAATCT+TGG + chr3_1:85285192-85285211 None:intergenic 15.0%
!!! GTGCTTTTTATTTATTAGAT+AGG - chr3_1:85282477-85282496 Msa0382630:CDS 20.0%
!! ATATCCTCCATATTAAATAT+GGG + chr3_1:85283128-85283147 None:intergenic 20.0%
!! TATATCCTCCATATTAAATA+TGG + chr3_1:85283129-85283148 None:intergenic 20.0%
!!! CATTTTTTTAGACAAATCTA+AGG + chr3_1:85283288-85283307 None:intergenic 20.0%
!!! AATGATATTACAATGTCTTT+TGG - chr3_1:85283304-85283323 Msa0382630:CDS 20.0%
!! GAATAATTTCTTTATACCAA+AGG + chr3_1:85283569-85283588 None:intergenic 20.0%
!!! GTTTAATTTTGATACATTGT+GGG + chr3_1:85283739-85283758 None:intergenic 20.0%
!!! AGTTTAATTTTGATACATTG+TGG + chr3_1:85283740-85283759 None:intergenic 20.0%
!!! TAAACAAATTTTACATTACG+TGG + chr3_1:85285040-85285059 None:intergenic 20.0%
! ACTGAAAATAACAATAATGG+TGG + chr3_1:85282056-85282075 None:intergenic 25.0%
!!! TATATTATTTTGTGGTATGC+AGG - chr3_1:85282081-85282100 Msa0382630:three_prime_UTR 25.0%
!!! TTCTTATTTTATGTGTTCCA+TGG - chr3_1:85282246-85282265 Msa0382630:three_prime_UTR 25.0%
!!! CTGGTTTATTTTCCTTTTAA+TGG - chr3_1:85282275-85282294 Msa0382630:three_prime_UTR 25.0%
! AATGAGAACAATACAAAACA+CGG + chr3_1:85282308-85282327 None:intergenic 25.0%
! ATGAAAAATAACATGCTAAG+TGG - chr3_1:85282355-85282374 Msa0382630:exon 25.0%
! AATCAACACAGTACAATTAT+AGG - chr3_1:85282385-85282404 Msa0382630:CDS 25.0%
!!! CAAATTTCTAAAGCTTCTTT+AGG - chr3_1:85282418-85282437 Msa0382630:CDS 25.0%
! CAACTCTTAACAATAATGTT+AGG + chr3_1:85283020-85283039 None:intergenic 25.0%
! ACATTATTGTTAAGAGTTGT+TGG - chr3_1:85283021-85283040 Msa0382630:intron 25.0%
! CATTATTGTTAAGAGTTGTT+GGG - chr3_1:85283022-85283041 Msa0382630:intron 25.0%
! ATTATTGTTAAGAGTTGTTG+GGG - chr3_1:85283023-85283042 Msa0382630:intron 25.0%
! ATTTAATATGGAGGATATAG+AGG - chr3_1:85283130-85283149 Msa0382630:CDS 25.0%
!! TCATTTAACTCCCTTATTTA+CGG - chr3_1:85283188-85283207 Msa0382630:CDS 25.0%
! ACATGAAAAACCGTAAATAA+GGG + chr3_1:85283201-85283220 None:intergenic 25.0%
!!! TGATGATTTTGATTGATTGA+CGG + chr3_1:85283626-85283645 None:intergenic 25.0%
! AAACAAATTTATTATTCCCG+AGG - chr3_1:85284149-85284168 Msa0382630:CDS 25.0%
!! AAATTTTACCGTTACATCAA+AGG - chr3_1:85284451-85284470 Msa0382630:intron 25.0%
! GTACTTATTGTGAATTTGAT+AGG - chr3_1:85284548-85284567 Msa0382630:CDS 25.0%
!! TTCTATATTCTCTTTGTTGT+GGG - chr3_1:85284748-85284767 Msa0382630:intron 25.0%
! TTGATGTCTCTAAATCAAAA+AGG + chr3_1:85284878-85284897 None:intergenic 25.0%
!!! TTTTTGATTTAGAGACATCA+AGG - chr3_1:85284877-85284896 Msa0382630:intron 25.0%
! ATATAAACAAGAATTCAGCA+TGG - chr3_1:85284912-85284931 Msa0382630:intron 25.0%
!!! CCTATTTTTCATGCATTAAT+AGG + chr3_1:85284945-85284964 None:intergenic 25.0%
! CCTATTAATGCATGAAAAAT+AGG - chr3_1:85284942-85284961 Msa0382630:intron 25.0%
! TTAATGCATGAAAAATAGGA+CGG - chr3_1:85284946-85284965 Msa0382630:intron 25.0%
! GAATATAGTTAAAGCAAACA+AGG - chr3_1:85285066-85285085 Msa0382630:CDS 25.0%
GAAAATAACAATAATGGTGG+AGG + chr3_1:85282053-85282072 None:intergenic 30.0%
ATGAGAACAATACAAAACAC+GGG + chr3_1:85282307-85282326 None:intergenic 30.0%
CAATAATAGCAAAGCTCTTA+AGG - chr3_1:85282606-85282625 Msa0382630:CDS 30.0%
AATATTGTCTTCTTCGATGT+AGG - chr3_1:85282736-85282755 Msa0382630:CDS 30.0%
CATATTAAATATGGGAATGG+TGG + chr3_1:85283120-85283139 None:intergenic 30.0%
CACCATTCCCATATTTAATA+TGG - chr3_1:85283118-85283137 Msa0382630:CDS 30.0%
CTCCATATTAAATATGGGAA+TGG + chr3_1:85283123-85283142 None:intergenic 30.0%
CATTCCCATATTTAATATGG+AGG - chr3_1:85283121-85283140 Msa0382630:CDS 30.0%
CACATGAAAAACCGTAAATA+AGG + chr3_1:85283202-85283221 None:intergenic 30.0%
! ATATTACAATGTCTTTTGGC+AGG - chr3_1:85283308-85283327 Msa0382630:CDS 30.0%
CTTAAGAAGAGTTGTAGAAT+TGG + chr3_1:85283450-85283469 None:intergenic 30.0%
CAATTCTACAACTCTTCTTA+AGG - chr3_1:85283448-85283467 Msa0382630:intron 30.0%
TTATGAAGACAAGACAGAAT+GGG - chr3_1:85283496-85283515 Msa0382630:intron 30.0%
!!! GTTTTTTAATTCTCGTCCTT+TGG - chr3_1:85283550-85283569 Msa0382630:intron 30.0%
!! TTCTAAAGTCTCCTAGATAT+TGG - chr3_1:85283681-85283700 Msa0382630:intron 30.0%
AGAGAACAAATCATTTACCT+CGG + chr3_1:85284169-85284188 None:intergenic 30.0%
!! ATGATTTGTTCTCTCATTTC+TGG - chr3_1:85284175-85284194 Msa0382630:CDS 30.0%
!! AACCTTATAACTACTGATTC+TGG - chr3_1:85284203-85284222 Msa0382630:CDS 30.0%
ATCCAGAATCAGTAGTTATA+AGG + chr3_1:85284208-85284227 None:intergenic 30.0%
AATTGAAGTAGTGAAAATGG+AGG + chr3_1:85284297-85284316 None:intergenic 30.0%
CAGAATTGAAGTAGTGAAAA+TGG + chr3_1:85284300-85284319 None:intergenic 30.0%
! CATTTTCACTACTTCAATTC+TGG - chr3_1:85284298-85284317 Msa0382630:intron 30.0%
! TTCACAATAAGTACTGTTGT+AGG + chr3_1:85284542-85284561 None:intergenic 30.0%
! TGTGAATTTGATAGGTATTG+TGG - chr3_1:85284556-85284575 Msa0382630:CDS 30.0%
! AAAGCTCTTCTTTGCTATAT+GGG - chr3_1:85284634-85284653 Msa0382630:CDS 30.0%
TCATTTATACCCTTTCTTGA+AGG - chr3_1:85284664-85284683 Msa0382630:intron 30.0%
CATTTATACCCTTTCTTGAA+GGG - chr3_1:85284665-85284684 Msa0382630:intron 30.0%
ACAAAGAGAATATAGAAGCA+AGG + chr3_1:85284745-85284764 None:intergenic 30.0%
CTTCTATATTCTCTTTGTTG+TGG - chr3_1:85284747-85284766 Msa0382630:intron 30.0%
!! CTATTGGATGATGATTTGTT+GGG + chr3_1:85284800-85284819 None:intergenic 30.0%
! ACTATTGGATGATGATTTGT+TGG + chr3_1:85284801-85284820 None:intergenic 30.0%
TAATGCATGAAAAATAGGAC+GGG - chr3_1:85284947-85284966 Msa0382630:intron 30.0%
GTTTCGAACATATCTAACCT+TGG - chr3_1:85282499-85282518 Msa0382630:CDS 35.0%
ACATCACACAAGATAAACCA+AGG + chr3_1:85282519-85282538 None:intergenic 35.0%
ATTCAAAAGATATGCACCGT+TGG + chr3_1:85282566-85282585 None:intergenic 35.0%
TAATAGCAAAGCTCTTAAGG+AGG - chr3_1:85282609-85282628 Msa0382630:CDS 35.0%
GAAGAAGACAATATTGCGAT+TGG + chr3_1:85282731-85282750 None:intergenic 35.0%
! TTCAATAGGCAAGCTTTGTA+TGG - chr3_1:85282960-85282979 Msa0382630:intron 35.0%
!!! TTATGATCCTGTTTTGACTG+AGG - chr3_1:85282983-85283002 Msa0382630:intron 35.0%
!! GGTTCTAGAAAGAAAGGAAA+GGG - chr3_1:85283044-85283063 Msa0382630:CDS 35.0%
TAATATGGAGGATATAGAGG+AGG - chr3_1:85283133-85283152 Msa0382630:CDS 35.0%
AATATGGAGGATATAGAGGA+GGG - chr3_1:85283134-85283153 Msa0382630:CDS 35.0%
GAAAATTGTTTGCAGTAACC+TGG - chr3_1:85283252-85283271 Msa0382630:CDS 35.0%
ATCTAAGGATATCTACAACC+AGG + chr3_1:85283273-85283292 None:intergenic 35.0%
AATGTGGCAGCAATAAAAAC+CGG + chr3_1:85283398-85283417 None:intergenic 35.0%
! TTTTATTGCTGCCACATTCA+TGG - chr3_1:85283400-85283419 Msa0382630:intron 35.0%
AGAGTTGTAGAATTGGTTGA+AGG + chr3_1:85283443-85283462 None:intergenic 35.0%
GTTATGAAGACAAGACAGAA+TGG - chr3_1:85283495-85283514 Msa0382630:intron 35.0%
TATGAAGACAAGACAGAATG+GGG - chr3_1:85283497-85283516 Msa0382630:intron 35.0%
GCAAATCAGAACCAATATCT+AGG + chr3_1:85283695-85283714 None:intergenic 35.0%
TTTGTGAGAAGACAAAATGC+AGG + chr3_1:85284132-85284151 None:intergenic 35.0%
GAGAACAAATCATTTACCTC+GGG + chr3_1:85284168-85284187 None:intergenic 35.0%
TAAGTAACTTTGCTAGCATG+TGG - chr3_1:85284255-85284274 Msa0382630:CDS 35.0%
TAGTGAAAATGGAGGTAAAG+AGG + chr3_1:85284289-85284308 None:intergenic 35.0%
GTCATTTGCCTTTGATGTAA+CGG + chr3_1:85284462-85284481 None:intergenic 35.0%
! CAATAAGTACTGTTGTAGGA+GGG + chr3_1:85284538-85284557 None:intergenic 35.0%
! ACAATAAGTACTGTTGTAGG+AGG + chr3_1:85284539-85284558 None:intergenic 35.0%
! AATTTGATAGGTATTGTGGC+TGG - chr3_1:85284560-85284579 Msa0382630:CDS 35.0%
! AGATTGGTAACCACTGTTTA+TGG + chr3_1:85284597-85284616 None:intergenic 35.0%
TAAACAGTGGTTACCAATCT+TGG - chr3_1:85284597-85284616 Msa0382630:CDS 35.0%
AAACAGTGGTTACCAATCTT+GGG - chr3_1:85284598-85284617 Msa0382630:CDS 35.0%
AAGAAGAGCTTTCCAAATAG+TGG + chr3_1:85284626-85284645 None:intergenic 35.0%
! GAAAGCTCTTCTTTGCTATA+TGG - chr3_1:85284633-85284652 Msa0382630:CDS 35.0%
! ACCAACCATTGTTATTGTCT+GGG - chr3_1:85284712-85284731 Msa0382630:intron 35.0%
GAATATAGAAGCAAGGAGAA+CGG + chr3_1:85284738-85284757 None:intergenic 35.0%
AATGCATGAAAAATAGGACG+GGG - chr3_1:85284948-85284967 Msa0382630:intron 35.0%
TAGAAACAAGAATGCTATGC+AGG + chr3_1:85284987-85285006 None:intergenic 35.0%
! TTTTCTATTGTGAGCTAGTG+TGG - chr3_1:85285111-85285130 Msa0382630:intron 35.0%
CGTAATACCTGAATCATTCC+AGG + chr3_1:85282008-85282027 None:intergenic 40.0%
! TGTTCTTAGGACATAGTGGA+GGG - chr3_1:85282104-85282123 Msa0382630:three_prime_UTR 40.0%
AAATAAACCAGACAACGCCA+TGG + chr3_1:85282266-85282285 None:intergenic 40.0%
TGTGCTAATCGATCAAACGA+TGG - chr3_1:85282452-85282471 Msa0382630:CDS 40.0%
!! TTCATGATGGATCCTGCTTA+TGG - chr3_1:85282640-85282659 Msa0382630:CDS 40.0%
CATGTCTTCTTTCCATAAGC+AGG + chr3_1:85282655-85282674 None:intergenic 40.0%
CAATTTCCGCAGAGATTTGA+TGG - chr3_1:85282682-85282701 Msa0382630:CDS 40.0%
TCAATGCCATCAAATCTCTG+CGG + chr3_1:85282691-85282710 None:intergenic 40.0%
TCAAGTTTAGCGAAAGCAGT+TGG + chr3_1:85282863-85282882 None:intergenic 40.0%
ATCTGCCAGATCAACTTGAA+AGG - chr3_1:85282891-85282910 Msa0382630:CDS 40.0%
ATCAACTTGAAAGGTCAGGA+TGG - chr3_1:85282900-85282919 Msa0382630:CDS 40.0%
AAAGGTCAGGATGGTATTCA+GGG - chr3_1:85282909-85282928 Msa0382630:CDS 40.0%
!! GAACTGGTTGCTGTTTCAAT+AGG - chr3_1:85282946-85282965 Msa0382630:intron 40.0%
AGATCTTCCTCAGTCAAAAC+AGG + chr3_1:85282993-85283012 None:intergenic 40.0%
!! TGTTGGGGTTCTAGAAAGAA+AGG - chr3_1:85283038-85283057 Msa0382630:intron 40.0%
!! GGGTTCTAGAAAGAAAGGAA+AGG - chr3_1:85283043-85283062 Msa0382630:CDS 40.0%
TCTAGAAAGAAAGGAAAGGG+TGG - chr3_1:85283047-85283066 Msa0382630:CDS 40.0%
CTAGAAAGAAAGGAAAGGGT+GGG - chr3_1:85283048-85283067 Msa0382630:CDS 40.0%
AAGGGTGGGAATAAGAAGTA+CGG - chr3_1:85283062-85283081 Msa0382630:CDS 40.0%
! TGGCAGGTTATGATGATGAA+AGG - chr3_1:85283324-85283343 Msa0382630:CDS 40.0%
TCTAATGTCTCAGAAGAGCT+TGG - chr3_1:85283352-85283371 Msa0382630:CDS 40.0%
TAGAATTGGTTGAAGGTGGA+AGG + chr3_1:85283436-85283455 None:intergenic 40.0%
GTTGTAGAATTGGTTGAAGG+TGG + chr3_1:85283440-85283459 None:intergenic 40.0%
! CATAACCACAACTGATAACG+TGG + chr3_1:85283481-85283500 None:intergenic 40.0%
! ATTTTCTGACTTCCCCAGAT+TGG - chr3_1:85283802-85283821 Msa0382630:CDS 40.0%
ACCATAGATCCATCCAATCT+GGG + chr3_1:85283818-85283837 None:intergenic 40.0%
AACCATAGATCCATCCAATC+TGG + chr3_1:85283819-85283838 None:intergenic 40.0%
TGACTGAAGATATCCTGACT+GGG - chr3_1:85283842-85283861 Msa0382630:CDS 40.0%
AGACGGTCTGAAAGATTGAT+GGG + chr3_1:85283940-85283959 None:intergenic 40.0%
GAAGATCTCTATTGAACCCA+AGG + chr3_1:85283983-85284002 None:intergenic 40.0%
CAATAGAGATCTTCCTTAGC+AGG - chr3_1:85283989-85284008 Msa0382630:intron 40.0%
ATAAAGGACAATGCCTGCTA+AGG + chr3_1:85284005-85284024 None:intergenic 40.0%
! TTAGCAGGCATTGTCCTTTA+TGG - chr3_1:85284004-85284023 Msa0382630:intron 40.0%
! AGGCATTGTCCTTTATGGTA+TGG - chr3_1:85284009-85284028 Msa0382630:intron 40.0%
CCATTGTAGCCATACCATAA+AGG + chr3_1:85284021-85284040 None:intergenic 40.0%
CCTTTATGGTATGGCTACAA+TGG - chr3_1:85284018-85284037 Msa0382630:intron 40.0%
TATGGTATGGCTACAATGGA+AGG - chr3_1:85284022-85284041 Msa0382630:intron 40.0%
AGCAATGGGATTGAGGTAAA+GGG + chr3_1:85284093-85284112 None:intergenic 40.0%
AAGCAATGGGATTGAGGTAA+AGG + chr3_1:85284094-85284113 None:intergenic 40.0%
!! CTACTTCAATTCTGGAGCTT+AGG - chr3_1:85284306-85284325 Msa0382630:intron 40.0%
!!! AACGAGCAGTTTTGGGTTAT+CGG - chr3_1:85284362-85284381 Msa0382630:intron 40.0%
! ATCTTTTCGCCGTGTTTCAA+GGG - chr3_1:85284399-85284418 Msa0382630:intron 40.0%
TTTGAGAAGCCCTTGAAACA+CGG + chr3_1:85284411-85284430 None:intergenic 40.0%
TCAAAGGCAAATGACGAAGA+CGG - chr3_1:85284467-85284486 Msa0382630:CDS 40.0%
CTGAGCTATACGTGTTCAAA+TGG - chr3_1:85284498-85284517 Msa0382630:CDS 40.0%
! GTGTCTTTTGCCATAAACAG+TGG - chr3_1:85284584-85284603 Msa0382630:CDS 40.0%
AACAGTGGTTACCAATCTTG+GGG - chr3_1:85284599-85284618 Msa0382630:CDS 40.0%
CCAAAAGACCCTTCAAGAAA+GGG + chr3_1:85284676-85284695 None:intergenic 40.0%
! CCTTTCTTGAAGGGTCTTTT+GGG - chr3_1:85284674-85284693 Msa0382630:intron 40.0%
! CTTTCTTGAAGGGTCTTTTG+GGG - chr3_1:85284675-85284694 Msa0382630:intron 40.0%
! CACCAACCATTGTTATTGTC+TGG - chr3_1:85284711-85284730 Msa0382630:intron 40.0%
! TATTCTCTTTGTTGTGGGTG+AGG - chr3_1:85284753-85284772 Msa0382630:intron 40.0%
TTGTTGGGATCAGAGATGAA+GGG + chr3_1:85284785-85284804 None:intergenic 40.0%
TTTGTTGGGATCAGAGATGA+AGG + chr3_1:85284786-85284805 None:intergenic 40.0%
TCATCATCCAATAGTCAGTG+TGG - chr3_1:85284806-85284825 Msa0382630:intron 40.0%
! GTTGATACCACACTGACTAT+TGG + chr3_1:85284816-85284835 None:intergenic 40.0%
ACAAGGTGCAATGTGATGAT+TGG - chr3_1:85285083-85285102 Msa0382630:CDS 40.0%
! CTTGATGATCAGAGTTGTGT+TGG - chr3_1:85285163-85285182 Msa0382630:intron 40.0%
TTGGCCTGGAAATAATCCCA+GGG - chr3_1:85281977-85281996 Msa0382630:three_prime_UTR 45.0%
TGATCCCTGGGATTATTTCC+AGG + chr3_1:85281984-85282003 None:intergenic 45.0%
AATAATCCCAGGGATCATCC+TGG - chr3_1:85281987-85282006 Msa0382630:three_prime_UTR 45.0%
ATCATTCCAGGATGATCCCT+GGG + chr3_1:85281996-85282015 None:intergenic 45.0%
AATCATTCCAGGATGATCCC+TGG + chr3_1:85281997-85282016 None:intergenic 45.0%
GGATCATCCTGGAATGATTC+AGG - chr3_1:85281998-85282017 Msa0382630:three_prime_UTR 45.0%
! CAATAATGGTGGAGGTTCTG+CGG + chr3_1:85282045-85282064 None:intergenic 45.0%
TGTGGTATGCAGGTGTTCTT+AGG - chr3_1:85282091-85282110 Msa0382630:three_prime_UTR 45.0%
CAGGTGTTCTTAGGACATAG+TGG - chr3_1:85282100-85282119 Msa0382630:three_prime_UTR 45.0%
GTGTTCTTAGGACATAGTGG+AGG - chr3_1:85282103-85282122 Msa0382630:three_prime_UTR 45.0%
CGAGACACATAAACAAGCCT+GGG + chr3_1:85282154-85282173 None:intergenic 45.0%
ACGAGACACATAAACAAGCC+TGG + chr3_1:85282155-85282174 None:intergenic 45.0%
TTCTTGTGATGTTGGAAGCC+TGG + chr3_1:85282187-85282206 None:intergenic 45.0%
AGGCTTCCAACATCACAAGA+AGG - chr3_1:85282186-85282205 Msa0382630:three_prime_UTR 45.0%
TTCCAACATCACAAGAAGGC+TGG - chr3_1:85282190-85282209 Msa0382630:three_prime_UTR 45.0%
CACGGGAAACAGCCATTAAA+AGG + chr3_1:85282290-85282309 None:intergenic 45.0%
GTTTCTGCTGTCTTGACCAA+CGG - chr3_1:85282547-85282566 Msa0382630:CDS 45.0%
GGAGGCTATGTGTTTCATGA+TGG - chr3_1:85282627-85282646 Msa0382630:CDS 45.0%
AGCAGTTGGAGTGTAATGCA+AGG + chr3_1:85282849-85282868 None:intergenic 45.0%
!! CCTGACCTTTCAAGTTGATC+TGG + chr3_1:85282899-85282918 None:intergenic 45.0%
CCAGATCAACTTGAAAGGTC+AGG - chr3_1:85282896-85282915 Msa0382630:CDS 45.0%
GAAAGGTCAGGATGGTATTC+AGG - chr3_1:85282908-85282927 Msa0382630:CDS 45.0%
AACCAGTTCCCACATAGACA+GGG + chr3_1:85282935-85282954 None:intergenic 45.0%
! AGAAGTACGGTGACAAGAAG+AGG - chr3_1:85283075-85283094 Msa0382630:CDS 45.0%
GAAGTACGGTGACAAGAAGA+GGG - chr3_1:85283076-85283095 Msa0382630:CDS 45.0%
AAGTACGGTGACAAGAAGAG+GGG - chr3_1:85283077-85283096 Msa0382630:CDS 45.0%
!! AAGAGCTTGGAGAAGCGTTT+CGG - chr3_1:85283365-85283384 Msa0382630:CDS 45.0%
GCAATCCACGTTATCAGTTG+TGG - chr3_1:85283473-85283492 Msa0382630:intron 45.0%
CCATAGATCCATCCAATCTG+GGG + chr3_1:85283817-85283836 None:intergenic 45.0%
GTGACTGAAGATATCCTGAC+TGG - chr3_1:85283841-85283860 Msa0382630:CDS 45.0%
CATGCATCTTAAACCCAGTC+AGG + chr3_1:85283858-85283877 None:intergenic 45.0%
TTAAGATGCATGCACGTGGT+TGG - chr3_1:85283866-85283885 Msa0382630:intron 45.0%
GAGACGGTCTGAAAGATTGA+TGG + chr3_1:85283941-85283960 None:intergenic 45.0%
TCTTTCAGACCGTCTCAATC+AGG - chr3_1:85283945-85283964 Msa0382630:intron 45.0%
ATGGCTACAATGGAAGGATG+AGG - chr3_1:85284028-85284047 Msa0382630:intron 45.0%
ATATAAGCCAGCCTCATGAG+AGG + chr3_1:85284054-85284073 None:intergenic 45.0%
GCAATGGGATTGAGGTAAAG+GGG + chr3_1:85284092-85284111 None:intergenic 45.0%
!! CTTCAATTCTGGAGCTTAGG+TGG - chr3_1:85284309-85284328 Msa0382630:intron 45.0%
!! GTGGTGTTGGTATAGAAGAC+TGG - chr3_1:85284333-85284352 Msa0382630:intron 45.0%
! GTGTTGGTATAGAAGACTGG+TGG - chr3_1:85284336-85284355 Msa0382630:intron 45.0%
! GTGGAGAAACGAGCAGTTTT+GGG - chr3_1:85284355-85284374 Msa0382630:intron 45.0%
! CATCTTTTCGCCGTGTTTCA+AGG - chr3_1:85284398-85284417 Msa0382630:intron 45.0%
CAAAGGCAAATGACGAAGAC+GGG - chr3_1:85284468-85284487 Msa0382630:CDS 45.0%
AAAGGCAAATGACGAAGACG+GGG - chr3_1:85284469-85284488 Msa0382630:CDS 45.0%
!! CAAATAGTGGACCCCAAGAT+TGG + chr3_1:85284613-85284632 None:intergenic 45.0%
CAATCTTGGGGTCCACTATT+TGG - chr3_1:85284611-85284630 Msa0382630:CDS 45.0%
! CCCTTTCTTGAAGGGTCTTT+TGG - chr3_1:85284673-85284692 Msa0382630:intron 45.0%
CCCAAAAGACCCTTCAAGAA+AGG + chr3_1:85284677-85284696 None:intergenic 45.0%
GCCCAGACAATAACAATGGT+TGG + chr3_1:85284716-85284735 None:intergenic 45.0%
AACGGCCCAGACAATAACAA+TGG + chr3_1:85284720-85284739 None:intergenic 45.0%
TGTTGGGATCAGAGATGAAG+GGG + chr3_1:85284784-85284803 None:intergenic 45.0%
AGGTGCAATGTGATGATTGG+TGG - chr3_1:85285086-85285105 Msa0382630:CDS 45.0%
!!! ATAATTTTTTAATTACAAAT+TGG + chr3_1:85282787-85282806 None:intergenic 5.0%
!!! ATTAAAAAATTATTTTCTTT+TGG - chr3_1:85282794-85282813 Msa0382630:CDS 5.0%
CTGGGATTATTTCCAGGCCA+AGG + chr3_1:85281978-85281997 None:intergenic 50.0%
CTTGGCCTGGAAATAATCCC+AGG - chr3_1:85281976-85281995 Msa0382630:three_prime_UTR 50.0%
AGTGGAGGGCTTGATACAGA+TGG - chr3_1:85282118-85282137 Msa0382630:three_prime_UTR 50.0%
CAGATGGCAATGAACTTCCC+AGG - chr3_1:85282134-85282153 Msa0382630:three_prime_UTR 50.0%
CTCCAGCCTTCTTGTGATGT+TGG + chr3_1:85282195-85282214 None:intergenic 50.0%
GGCTGGAGCTATGAATGCTT+TGG - chr3_1:85282207-85282226 Msa0382630:three_prime_UTR 50.0%
ATGTGTTCCATGGCGTTGTC+TGG - chr3_1:85282256-85282275 Msa0382630:three_prime_UTR 50.0%
TATTCAGGGCCCTGTCTATG+TGG - chr3_1:85282923-85282942 Msa0382630:CDS 50.0%
ATTCAGGGCCCTGTCTATGT+GGG - chr3_1:85282924-85282943 Msa0382630:CDS 50.0%
CAACCAGTTCCCACATAGAC+AGG + chr3_1:85282936-85282955 None:intergenic 50.0%
!! GATATAGAGGAGGGTGTCGA+AGG - chr3_1:85283143-85283162 Msa0382630:CDS 50.0%
CAAGACAGAATGGGGCAAAG+AGG - chr3_1:85283505-85283524 Msa0382630:intron 50.0%
TCTGACTTCCCCAGATTGGA+TGG - chr3_1:85283806-85283825 Msa0382630:CDS 50.0%
CCCCAGATTGGATGGATCTA+TGG - chr3_1:85283814-85283833 Msa0382630:CDS 50.0%
! GGGTTTAAGATGCATGCACG+TGG - chr3_1:85283862-85283881 Msa0382630:CDS 50.0%
ACGAGGTGGCATGCAATAGA+CGG + chr3_1:85283896-85283915 None:intergenic 50.0%
ACCGTCTCAATCAGGTGCTT+CGG - chr3_1:85283953-85283972 Msa0382630:intron 50.0%
! ACCGAAGCACCTGATTGAGA+CGG + chr3_1:85283957-85283976 None:intergenic 50.0%
TCTCAATCAGGTGCTTCGGT+GGG - chr3_1:85283957-85283976 Msa0382630:intron 50.0%
GTACGCAAGCAATGGGATTG+AGG + chr3_1:85284100-85284119 None:intergenic 50.0%
GCACACAGTACGCAAGCAAT+GGG + chr3_1:85284107-85284126 None:intergenic 50.0%
AGCACACAGTACGCAAGCAA+TGG + chr3_1:85284108-85284127 None:intergenic 50.0%
!! ATTCTGGAGCTTAGGTGGAG+TGG - chr3_1:85284314-85284333 Msa0382630:intron 50.0%
! GGTGGAGAAACGAGCAGTTT+TGG - chr3_1:85284354-85284373 Msa0382630:intron 50.0%
!!! GAGCAGTTTTGGGTTATCGG+TGG - chr3_1:85284365-85284384 Msa0382630:intron 50.0%
! GGCTTCTCAAAGTGCTTGCA+GGG - chr3_1:85284420-85284439 Msa0382630:intron 50.0%
GTGTCTCGTGAAAAGCGACC+AGG - chr3_1:85282166-85282185 Msa0382630:three_prime_UTR 55.0%
! GAAGCGTTTCGGACAGTCTC+CGG - chr3_1:85283376-85283395 Msa0382630:intron 55.0%
GCTGCCACATTCATGGAGCA+AGG - chr3_1:85283407-85283426 Msa0382630:intron 55.0%
GCCACATTCATGGAGCAAGG+TGG - chr3_1:85283410-85283429 Msa0382630:intron 55.0%
GCCACCTTGCTCCATGAATG+TGG + chr3_1:85283414-85283433 None:intergenic 55.0%
CTATTGCATGCCACCTCGTC+CGG - chr3_1:85283897-85283916 Msa0382630:intron 55.0%
GGAGCAGAACCCTTGAATGC+CGG + chr3_1:85283919-85283938 None:intergenic 55.0%
GTCTCAATCAGGTGCTTCGG+TGG - chr3_1:85283956-85283975 Msa0382630:intron 55.0%
GAAGGATGAGGCCTCTCATG+AGG - chr3_1:85284040-85284059 Msa0382630:intron 55.0%
GAGCTTAGGTGGAGTGGTGT+TGG - chr3_1:85284320-85284339 Msa0382630:intron 55.0%
! GGGCTTCTCAAAGTGCTTGC+AGG - chr3_1:85284419-85284438 Msa0382630:intron 55.0%
CAGGATGGAACTCCTTGGCC+TGG - chr3_1:85281963-85281982 Msa0382630:three_prime_UTR 60.0%
GGCCCTGTCTATGTGGGAAC+TGG - chr3_1:85282930-85282949 Msa0382630:CDS 60.0%
CCACCTCGTCCGGCATTCAA+GGG - chr3_1:85283907-85283926 Msa0382630:intron 60.0%
GAACCCTTGAATGCCGGACG+AGG + chr3_1:85283913-85283932 None:intergenic 60.0%
GATGAGGCCTCTCATGAGGC+TGG - chr3_1:85284044-85284063 Msa0382630:intron 60.0%
GCCACCTCGTCCGGCATTCA+AGG - chr3_1:85283906-85283925 Msa0382630:intron 65.0%
CCCTTGAATGCCGGACGAGG+TGG + chr3_1:85283910-85283929 None:intergenic 65.0%
TCAGGTGCTTCGGTGGGCCT+TGG - chr3_1:85283963-85283982 Msa0382630:intron 65.0%
CAGGTGCTTCGGTGGGCCTT+GGG - chr3_1:85283964-85283983 Msa0382630:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 85281960 85285251 85281960 ID=Msa0382630;Name=Msa0382630
chr3_1 mRNA 85281960 85285251 85281960 ID=Msa0382630-mRNA-1;Parent=Msa0382630;Name=Msa0382630-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.66|0.57|1|1|1|7|410|599
chr3_1 exon 85281960 85282957 85281960 ID=Msa0382630-mRNA-1:exon:22335;Parent=Msa0382630-mRNA-1
chr3_1 exon 85283041 85283391 85283041 ID=Msa0382630-mRNA-1:exon:22334;Parent=Msa0382630-mRNA-1
chr3_1 exon 85283685 85283881 85283685 ID=Msa0382630-mRNA-1:exon:22333;Parent=Msa0382630-mRNA-1
chr3_1 exon 85284047 85284311 85284047 ID=Msa0382630-mRNA-1:exon:22332;Parent=Msa0382630-mRNA-1
chr3_1 exon 85284458 85284670 85284458 ID=Msa0382630-mRNA-1:exon:22331;Parent=Msa0382630-mRNA-1
chr3_1 exon 85284983 85285108 85284983 ID=Msa0382630-mRNA-1:exon:22330;Parent=Msa0382630-mRNA-1
chr3_1 exon 85285192 85285251 85285192 ID=Msa0382630-mRNA-1:exon:22329;Parent=Msa0382630-mRNA-1
chr3_1 CDS 85285192 85285251 85285192 ID=Msa0382630-mRNA-1:cds;Parent=Msa0382630-mRNA-1
chr3_1 CDS 85284983 85285108 85284983 ID=Msa0382630-mRNA-1:cds;Parent=Msa0382630-mRNA-1
chr3_1 CDS 85284458 85284670 85284458 ID=Msa0382630-mRNA-1:cds;Parent=Msa0382630-mRNA-1
chr3_1 CDS 85284047 85284311 85284047 ID=Msa0382630-mRNA-1:cds;Parent=Msa0382630-mRNA-1
chr3_1 CDS 85283685 85283881 85283685 ID=Msa0382630-mRNA-1:cds;Parent=Msa0382630-mRNA-1
chr3_1 CDS 85283041 85283391 85283041 ID=Msa0382630-mRNA-1:cds;Parent=Msa0382630-mRNA-1
chr3_1 CDS 85282370 85282957 85282370 ID=Msa0382630-mRNA-1:cds;Parent=Msa0382630-mRNA-1
chr3_1 three_prime_UTR 85281960 85282369 85281960 ID=Msa0382630-mRNA-1:three_prime_utr;Parent=Msa0382630-mRNA-1
Gene Sequence

>Msa0382630

ATGCAGGATGGAACTCCTTGGCCTGGAAATAATCCCAGGGATCATCCTGGAATGATTCAGGTGTTCTTAGGACATAGTGGAGGGCTTGATACAGATGGCAATGAACTTCCCAGGCTTGTTTATGTGTCTCGTGAAAAGCGACCAGGCTTCCAACATCACAAGAAGGCTGGAGCTATGAATGCTTTGATTCGAGTTTCTGCTGTCTTGACCAACGGTGCATATCTTTTGAATGTCGATTGTGATCATTATTTCAATAATAGCAAAGCTCTTAAGGAGGCTATGTGTTTCATGATGGATCCTGCTTATGGAAAGAAGACATGCTATGTTCAATTTCCGCAGAGATTTGATGGCATTGATTTGCACGATCGATATGCCAATCGCAATATTGTCTTCTTCGATATCAACTTGAAAGGTCAGGATGGTATTCAGGGCCCTGTCTATGTGGGAACTGGTTGCTGTTTCAATAGGCAAGCTTTGTATGGTTATGATCCTGTTTTGACTGAGGAAGATCTCGAACCTAACATTATTGTTAAGAGTTGTTGGGGTTCTAGAAAGAAAGGAAAGGGTGGGAATAAGAAGTACGGTGACAAGAAGAGGGGAGTTAAAAGAACTGAATCCACCATTCCCATATTTAATATGGAGGATATAGAGGAGGGTGTCGAAGGTTATGATGATGAAAGGTCACTTCTAATGTCTCAGAAGAGCTTGGAGAAGCGTTTCGGACAGTCTCCGGTTTTTATTGCTGCCACATTCATGGAGCAAGGTGGCCTTCCACCTTCAACCAATTCTACAACTCTTCTTAAGGAAGCAATCCACGTTATCAGTTGTGGTTATGAAGACAAGACAGAATGGGGCAAAGAGATTGGATGGATCTATGGTTCTGTGACTGAAGATATCCTGACTGGGTTTAAGATGCATGCACGTGGTTGGATTTCCGTCTATTGCATGCCACCTCGTCCGGCATTCAAGGGTTCTGCTCCCATCAATCTTTCAGACCGTCTCAATCAGGTGCTTCGGTGGGCCTTGGGTTCAATAGAGATCTTCCTTAGCAGGCATTGTCCTTTATGGTATGGCTACAATGGAAGGATGAGGCCTCTCATGAGGCTGGCTTATATCAACACAATTATCTACCCCTTTACCTCAATCCCATTGCTTGCGTACTGTGTGCTTCCTGCATTTTGTCTTCTCACAAACAAATTTATTATTCCCGAGATAAGTAACTTTGCTAGCATGTGGTTTATTCTCCTCTTTACCTCCATTTTCACTACTTCAATTCTGGAGCTTAGGTGGAGTGGTGTTGGTATAGAAGACTGGTGGAGAAACGAGCAGTTTTGGGTTATCGGTGGAACATCTGCACATCTTTTCGCCGTGTTTCAAGGGCTTCTCAAAGTGCTTGCAGGGATTGACACAAATTTTACCGTTACATCAAAGGCAAATGACGAAGACGGGGACTTTGCTGAGCTATACGTGTTCAAATGGACATCACTTCTTATCCCTCCTACAACAGTACTTATTGTGAATTTGATAGGTATTGTGGCTGGTGTGTCTTTTGCCATAAACAGTGGTTACCAATCTTGGGGTCCACTATTTGGAAAGCTCTTCTTTGCTATATGGGTCATTGCTCATTTATACCCTTTCTTGAAGGGTCTTTTGGGGAAATCGAATCGTACACCAACCATTGTTATTGTCTGGGCCGTTCTCCTTGCTTCTATATTCTCTTTGTTGTGGGTGAGGATTGACCCCTTCATCTCTGATCCCAACAAATCATCATCCAATAGTCAGTGTGGTATCAACTGCTAG
Protein sequence

>Msa0382630

MQDGTPWPGNNPRDHPGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINLKGQDGIQGPVYVGTGCCFNRQALYGYDPVLTEEDLEPNIIVKSCWGSRKKGKGGNKKYGDKKRGVKRTESTIPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGLPPSTNSTTLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISVYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEIFLSRHCPLWYGYNGRMRPLMRLAYINTIIYPFTSIPLLAYCVLPAFCLLTNKFIIPEISNFASMWFILLFTSIFTTSILELRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKANDEDGDFAELYVFKWTSLLIPPTTVLIVNLIGIVAGVSFAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGKSNRTPTIVIVWAVLLASIFSLLWVRIDPFISDPNKSSSNSQCGINC*