AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0383230

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0383230 MtrunA17_Chr3g0138621 90.939 309 6 1 1 287 1 309 0.0 568
Msa0383230 MtrunA17_Chr1g0148421 73.463 309 53 2 1 287 1 302 1.62e-164 458
Msa0383230 MtrunA17_Chr1g0169881 67.314 309 71 3 1 287 1 301 5.35e-149 419
Msa0383230 MtrunA17_Chr7g0264931 65.748 254 65 1 56 287 16 269 1.09e-122 352
Msa0383230 MtrunA17_Chr4g0028121 66.802 247 60 1 62 286 58 304 2.20e-122 352
Msa0383230 MtrunA17_Chr2g0286331 54.839 248 89 2 58 283 12 258 1.28e-94 280
Msa0383230 MtrunA17_Chr4g0059881 34.397 282 135 9 29 283 1011 1269 2.96e-43 157
Msa0383230 MtrunA17_Chr8g0391161 31.987 297 151 9 27 286 953 1235 2.43e-42 155
Msa0383230 MtrunA17_Chr6g0484171 37.200 250 116 9 62 283 986 1222 7.21e-41 150
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0383230 AT5G25560.1 63.987 311 85 4 1 287 1 308 8.84e-136 386
Msa0383230 AT5G25560.5 63.987 311 85 4 1 287 1 308 8.84e-136 386
Msa0383230 AT5G25560.6 63.987 311 85 4 1 287 1 308 8.84e-136 386
Msa0383230 AT5G25560.2 63.987 311 85 4 1 287 1 308 8.84e-136 386
Msa0383230 AT5G25560.3 61.994 321 85 5 1 287 1 318 8.86e-133 379
Msa0383230 AT5G25560.4 62.701 311 84 5 1 287 1 303 3.09e-130 372
Msa0383230 AT5G22920.1 60.755 265 82 1 44 286 7 271 5.00e-118 340
Msa0383230 AT5G22920.2 65.238 210 73 0 44 253 7 216 2.97e-104 304
Msa0383230 AT5G18650.1 54.331 254 93 2 52 283 6 258 2.92e-96 284
Msa0383230 AT3G62970.1 50.794 252 102 2 55 285 26 276 1.40e-91 273
Msa0383230 AT3G62970.2 55.721 201 88 1 55 255 26 225 8.35e-83 249
Msa0383230 AT3G62970.3 55.721 201 88 1 55 255 26 225 2.02e-82 248
Msa0383230 AT1G74770.1 36.170 282 129 9 29 283 1000 1257 4.58e-47 169
Msa0383230 AT1G18910.1 37.011 281 126 9 30 283 996 1252 2.25e-45 164
Msa0383230 AT3G18290.1 35.827 254 121 8 62 287 1004 1243 1.62e-42 155
Msa0383230 AT1G74770.2 38.496 226 110 8 29 249 1000 1201 1.07e-40 150

Find 105 sgRNAs with CRISPR-Local

Find 356 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTTTGGATAGTTGTATTT+TGG 0.158519 3_1:+86016527 Msa0383230:three_prime_UTR
GAGAGAGGATATATGGAGTA+TGG 0.207183 3_1:+86013671 Msa0383230:CDS
CTTAATGGCAATTGAAAATT+AGG 0.218307 3_1:+86016408 Msa0383230:three_prime_UTR
TTCATTGTGCTTGCTGTTGC+AGG 0.244907 3_1:+86016271 Msa0383230:three_prime_UTR
ATGAACACATAGGCCCTTAA+TGG 0.246627 3_1:+86016393 Msa0383230:three_prime_UTR
ACCGGAGAAGGTGTCGTATT+AGG 0.258966 3_1:+86013789 Msa0383230:CDS
TTTCATTCAGACAGCTCTTA+TGG 0.265918 3_1:-86015374 None:intergenic
GCAGTAAATGCTTGCGTGTC+AGG 0.294400 3_1:-86010969 None:intergenic
TGTGCTTGCTGTTGCAGGTT+GGG 0.316056 3_1:+86016276 Msa0383230:three_prime_UTR
CCGGAGAAGGTGTCGTATTA+GGG 0.346547 3_1:+86013790 Msa0383230:CDS
TCTGTAGATGTCAACATTAC+CGG 0.349957 3_1:+86013771 Msa0383230:intron
CTTGCGAGAGAGAGGATATA+TGG 0.362778 3_1:+86013664 Msa0383230:CDS
TTTACGTTGTAATGTTTGTA+TGG 0.366566 3_1:+86016334 Msa0383230:three_prime_UTR
TCTCATATCCTCCAACTCTA+AGG 0.368205 3_1:+86011191 Msa0383230:five_prime_UTR
ATGCATGTGCTCTTCATTTG+AGG 0.389882 3_1:-86013597 None:intergenic
CAAAAGCACTGTTTCAAAAC+AGG 0.403494 3_1:-86010998 None:intergenic
AGTGCAAGCTATCTAGAAAC+AGG 0.408470 3_1:-86013460 None:intergenic
GCAGTGGTTGTGGAATTTGC+AGG 0.412763 3_1:+86014744 Msa0383230:CDS
GTGCTTGCTGTTGCAGGTTG+GGG 0.422852 3_1:+86016277 Msa0383230:three_prime_UTR
CTCCATTCTTATGAAGATAG+TGG 0.424980 3_1:+86016171 Msa0383230:three_prime_UTR
GACAGCTCTTATGGATTGTA+TGG 0.427608 3_1:-86015365 None:intergenic
TTCAATGCAACCGATGCAAA+TGG 0.428670 3_1:-86016198 None:intergenic
TGCATGTGCTCTTCATTTGA+GGG 0.437426 3_1:-86013596 None:intergenic
TGCAGGTTGGGGCAACTAGT+TGG 0.440988 3_1:+86016288 Msa0383230:three_prime_UTR
TTAGTAGTAGTTTATGAAAG+TGG 0.444010 3_1:+86011051 Msa0383230:five_prime_UTR
CAGTACCATTGCAGTGGTTG+TGG 0.446831 3_1:+86014734 Msa0383230:CDS
TCCCCGCCATCAGGTCAAAC+AGG 0.452846 3_1:+86014241 Msa0383230:CDS
TTTGTGCGACAAGATGAAAC+TGG 0.460355 3_1:-86016053 None:intergenic
AACGGTCACCCTTGCGTGGA+AGG 0.469907 3_1:+86015164 Msa0383230:CDS
AGCCACTATCTTCATAAGAA+TGG 0.471867 3_1:-86016173 None:intergenic
TAGTAGTTTATGAAAGTGGT+GGG 0.473233 3_1:+86011055 Msa0383230:five_prime_UTR
AGAATGGCCGGTCTTGTGTT+CGG 0.477658 3_1:-86011164 None:intergenic
ATTGTTACCTCAAAACAAAC+AGG 0.479044 3_1:-86015206 None:intergenic
TTCAATTTGAGTGCAATGAC+AGG 0.480009 3_1:+86013540 Msa0383230:CDS
TTTGGCATGGGAAAATCTGC+TGG 0.481627 3_1:+86016545 Msa0383230:three_prime_UTR
CGTAAACAATAGAGCACAAG+GGG 0.484768 3_1:-86016317 None:intergenic
TGCATTGCTCCTTCCACGCA+AGG 0.486426 3_1:-86015173 None:intergenic
AAACTGACTTTGAGCACAAA+GGG 0.486545 3_1:-86015513 None:intergenic
AGAGAGGATATATGGAGTAT+GGG 0.487300 3_1:+86013672 Msa0383230:CDS
TGGGTCAGGGGAGCTCTAAT+CGG 0.489772 3_1:+86011137 Msa0383230:five_prime_UTR
TACCTGTTTGACCTGATGGC+GGG 0.493489 3_1:-86014243 None:intergenic
TATCAATTGCGGTGTGTGCA+TGG 0.500787 3_1:+86014658 Msa0383230:CDS
CCCTAATACGACACCTTCTC+CGG 0.508236 3_1:-86013790 None:intergenic
AACATACCTGTTTGACCTGA+TGG 0.508780 3_1:-86014247 None:intergenic
GTCAGTTTGTGATATGTCAA+AGG 0.511690 3_1:+86015528 Msa0383230:CDS
ACACGACATTCCCCGCCATC+AGG 0.513051 3_1:+86014232 Msa0383230:CDS
TTGTGCTTGCTGTTGCAGGT+TGG 0.513938 3_1:+86016275 Msa0383230:three_prime_UTR
GTTTATACATGCAGGTCACT+AGG 0.515281 3_1:+86013430 Msa0383230:intron
CTGAAAATAGTGAGCATCAT+GGG 0.515352 3_1:+86013488 Msa0383230:exon
AAATAAGAATAAAAGCACTT+TGG 0.517518 3_1:+86016512 Msa0383230:three_prime_UTR
GTAGTAGTTTATGAAAGTGG+TGG 0.518846 3_1:+86011054 Msa0383230:five_prime_UTR
GAGGATATGAGAGGAGAGAA+TGG 0.527699 3_1:-86011180 None:intergenic
GATGTCAACATTACCGGAGA+AGG 0.534230 3_1:+86013777 Msa0383230:intron
ATCGGTTGCATTGAATATGA+TGG 0.538810 3_1:+86016206 Msa0383230:three_prime_UTR
TCAATGCAACCGATGCAAAT+GGG 0.542694 3_1:-86016197 None:intergenic
TGGATCCTTTGCAATGATTG+CGG 0.546423 3_1:+86016015 Msa0383230:CDS
AGAGCTGTCTGAATGAAATG+AGG 0.554066 3_1:+86015379 Msa0383230:CDS
CCCAGCAGACAAAACAAAGA+AGG 0.556816 3_1:-86011118 None:intergenic
TCAAATATCTCATTGCAACA+AGG 0.556883 3_1:-86013815 None:intergenic
TTACGTTGTAATGTTTGTAT+GGG 0.557569 3_1:+86016335 Msa0383230:three_prime_UTR
ATCAATGACTTGCGAGAGAG+AGG 0.557776 3_1:+86013656 Msa0383230:CDS
TTTCGCCGCAATCATTGCAA+AGG 0.558309 3_1:-86016020 None:intergenic
ATTAGGCTGTAATAAACTTG+TGG 0.559321 3_1:+86016425 Msa0383230:three_prime_UTR
ACCTGTTTGACCTGATGGCG+GGG 0.562153 3_1:-86014242 None:intergenic
GCACTCAAATTGAAGAGGCT+CGG 0.562219 3_1:-86013531 None:intergenic
CAGTAAATGCTTGCGTGTCA+GGG 0.562298 3_1:-86010968 None:intergenic
TCTGAAAATAGTGAGCATCA+TGG 0.568624 3_1:+86013487 Msa0383230:exon
ACAAAACAAAGAAGGATGGA+TGG 0.570330 3_1:-86011110 None:intergenic
AGTGAGCATCATGGGAGAAG+TGG 0.570618 3_1:+86013496 Msa0383230:exon
GTAGTTTATGAAAGTGGTGG+GGG 0.577768 3_1:+86011057 Msa0383230:five_prime_UTR
ATCAATTGCGGTGTGTGCAT+GGG 0.579084 3_1:+86014659 Msa0383230:CDS
TGTTGCTTTGATGAACACAT+AGG 0.580101 3_1:+86016383 Msa0383230:three_prime_UTR
ATATGAGAGGAGAGAATGGC+CGG 0.583600 3_1:-86011176 None:intergenic
ACAACGAACCTTAGAGTTGG+AGG 0.583681 3_1:-86011199 None:intergenic
GCAGACAAAACAAAGAAGGA+TGG 0.587703 3_1:-86011114 None:intergenic
CGGAGCTCCGAACACAAGAC+CGG 0.589759 3_1:+86011157 Msa0383230:five_prime_UTR
TCATTGCACTCAAATTGAAG+AGG 0.591774 3_1:-86013536 None:intergenic
TGGAAATGCATGAGTTGAGC+GGG 0.593340 3_1:+86016226 Msa0383230:three_prime_UTR
CAAATATCTCATTGCAACAA+GGG 0.593446 3_1:-86013814 None:intergenic
GAGCTGTCTGAATGAAATGA+GGG 0.595369 3_1:+86015380 Msa0383230:CDS
GGAACAACGAACCTTAGAGT+TGG 0.597252 3_1:-86011202 None:intergenic
AAATTCCACAACCACTGCAA+TGG 0.598547 3_1:-86014739 None:intergenic
CAAACTGACTTTGAGCACAA+AGG 0.599345 3_1:-86015514 None:intergenic
AGTAGTTTATGAAAGTGGTG+GGG 0.600458 3_1:+86011056 Msa0383230:five_prime_UTR
TTCTTCCACTGCTACAAGTG+TGG 0.601466 3_1:+86015012 Msa0383230:CDS
TCAAATGAAGAGCACATGCA+TGG 0.607616 3_1:+86013599 Msa0383230:CDS
AACGTAAACAATAGAGCACA+AGG 0.608424 3_1:-86016319 None:intergenic
ACTTACCACACTTGTAGCAG+TGG 0.608628 3_1:-86015017 None:intergenic
AAATATCTCATTGCAACAAG+GGG 0.613018 3_1:-86013813 None:intergenic
ACTCTGTGAGACTGAACAAG+AGG 0.613028 3_1:+86014383 Msa0383230:CDS
TAGTGGCTACCCATTTGCAT+CGG 0.618494 3_1:+86016188 Msa0383230:three_prime_UTR
TATAACACAAGACAAACAAG+AGG 0.622837 3_1:+86016096 Msa0383230:CDS
GCATTGCTCCTTCCACGCAA+GGG 0.626467 3_1:-86015172 None:intergenic
TTGTCGCCATTGTCACAATG+AGG 0.627282 3_1:+86013838 Msa0383230:CDS
ATACCTGTTTGACCTGATGG+CGG 0.637436 3_1:-86014244 None:intergenic
CAGCAGAACTGTATCAATTG+CGG 0.643368 3_1:+86014647 Msa0383230:CDS
TTAGAGTTGGAGGATATGAG+AGG 0.650901 3_1:-86011189 None:intergenic
CAATGACAGGAATCTTATCA+CGG 0.652971 3_1:+86013553 Msa0383230:CDS
AAGCAGCAGTACCATTGCAG+TGG 0.661184 3_1:+86014728 Msa0383230:CDS
GAAGGATGGATGGATCAAAG+AGG 0.670375 3_1:-86011100 None:intergenic
TGTATGGCCGCAATGCAACA+CGG 0.679908 3_1:-86015349 None:intergenic
ACGTAAACAATAGAGCACAA+GGG 0.680213 3_1:-86016318 None:intergenic
ATGGAAATGCATGAGTTGAG+CGG 0.688899 3_1:+86016225 Msa0383230:three_prime_UTR
GATGTCTCCGTGTTGCATTG+CGG 0.707696 3_1:+86015342 Msa0383230:CDS
GTAAACAATAGAGCACAAGG+GGG 0.858578 3_1:-86016316 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTTTTATATATTTAA+AGG + chr3_1:86013249-86013268 Msa0383230:intron 0.0%
!!! TTTTAATTTCTTTTATAACT+TGG + chr3_1:86011282-86011301 Msa0383230:intron 10.0%
!!! GGTTTTTTTTAATTTAAAAA+TGG - chr3_1:86011673-86011692 None:intergenic 10.0%
!! ATATAAAATAAAGTCAAATT+GGG - chr3_1:86015819-86015838 None:intergenic 10.0%
!! AATATAAAATAAAGTCAAAT+TGG - chr3_1:86015820-86015839 None:intergenic 10.0%
!!! ATTTGACTTTATTTTATATT+TGG + chr3_1:86015820-86015839 Msa0383230:intron 10.0%
!!! TTTTTAGGTTCATTAATTAA+AGG + chr3_1:86011350-86011369 Msa0383230:intron 15.0%
!!! GTTTTTTTTCAAAAAGTTAA+CGG - chr3_1:86012480-86012499 None:intergenic 15.0%
!!! AAATTTTATTGATGAATTTG+AGG - chr3_1:86011797-86011816 None:intergenic 15.0%
!!! GTTTTTTTTCAAAAAGTTAA+CGG + chr3_1:86012480-86012499 Msa0383230:intron 15.0%
!! CTAAATACATCATTTAATTA+AGG - chr3_1:86012621-86012640 None:intergenic 15.0%
!!! ATTTTTTAATATACAGTTCA+AGG + chr3_1:86013007-86013026 Msa0383230:intron 15.0%
!! TTTGTTTAAGTAATTAAGTA+AGG - chr3_1:86013107-86013126 None:intergenic 15.0%
!!! AAATCATTAATTTTTTACGA+TGG - chr3_1:86013749-86013768 None:intergenic 15.0%
!! TTCTAAATGATATAATGAAA+TGG - chr3_1:86014573-86014592 None:intergenic 15.0%
!!! TAAGCAAAAATCAACTTTTT+AGG + chr3_1:86011335-86011354 Msa0383230:intron 20.0%
!! GAGAAGAAAAAATAAGTTAA+GGG - chr3_1:86012577-86012596 None:intergenic 20.0%
!! TGAGAAGAAAAAATAAGTTA+AGG - chr3_1:86012576-86012595 None:intergenic 20.0%
!! TTGACACATTTAATAGTTAA+GGG - chr3_1:86012546-86012565 None:intergenic 20.0%
!! ATTGACACATTTAATAGTTA+AGG - chr3_1:86012545-86012564 None:intergenic 20.0%
!! AACTATTAAATGTGTCAATT+TGG + chr3_1:86011427-86011446 Msa0383230:intron 20.0%
!! TAAATAAGATGACATGTTTA+TGG - chr3_1:86011644-86011663 None:intergenic 20.0%
!! TCAAATGAAGAAATTGAAAA+AGG - chr3_1:86011718-86011737 None:intergenic 20.0%
!! AACTATTAAATGTGTCAATT+TGG - chr3_1:86011427-86011446 None:intergenic 20.0%
!! TTGACACATTTAATAGTTAA+AGG + chr3_1:86012546-86012565 Msa0383230:intron 20.0%
!! TGAGAAGAAAAAATAAGTTA+AGG + chr3_1:86012576-86012595 Msa0383230:intron 20.0%
!! GAGAAGAAAAAATAAGTTAA+GGG + chr3_1:86012577-86012596 Msa0383230:intron 20.0%
!! CATTCATTAAATGATGTATT+TGG - chr3_1:86012657-86012676 None:intergenic 20.0%
!!! TAAGCAAAAATCAACTTTTT+AGG - chr3_1:86011335-86011354 None:intergenic 20.0%
!!! TTTTTGCTTATAATAATGAC+CGG + chr3_1:86012692-86012711 Msa0383230:intron 20.0%
!! TATTTAAGAATTGAGATCAA+TGG - chr3_1:86012827-86012846 None:intergenic 20.0%
!! AAAATAATCGATAATTGATG+TGG - chr3_1:86012992-86013011 None:intergenic 20.0%
!!! TTATCAAATGCTTTTTCTTT+AGG - chr3_1:86013296-86013315 None:intergenic 20.0%
!!! TGTTATTGCTAAATTGTTTT+CGG + chr3_1:86013391-86013410 Msa0383230:intron 20.0%
!! TACAATATAATCCTCATTTA+TGG - chr3_1:86013953-86013972 None:intergenic 20.0%
!! TGTTATGAAATTACTTATGA+CGG + chr3_1:86014456-86014475 Msa0383230:intron 20.0%
!! TCTCAAAATTAATAACTGTT+TGG - chr3_1:86014506-86014525 None:intergenic 20.0%
!!! TTCATTATATCATTTAGAAC+TGG + chr3_1:86014574-86014593 Msa0383230:intron 20.0%
!!! ATATGTTTTAAAAACAGAAC+TGG + chr3_1:86014976-86014995 Msa0383230:intron 20.0%
!!! TTTGTATTTGATTTTGTATC+AGG + chr3_1:86015482-86015501 Msa0383230:intron 20.0%
!!! ATTTTATTAAGATATGGTTC+AGG - chr3_1:86015595-86015614 None:intergenic 20.0%
!! TGAACCATATCTTAATAAAA+TGG + chr3_1:86015594-86015613 Msa0383230:intron 20.0%
!!! CTTACCATTTTATTAAGATA+TGG - chr3_1:86015601-86015620 None:intergenic 20.0%
!!! TAATTTTCAATTGCCATTAA+GGG - chr3_1:86016409-86016428 None:intergenic 20.0%
!!! TAGTATTTTTCTTAAGACAT+GGG - chr3_1:86016477-86016496 None:intergenic 20.0%
!!! ATAGTATTTTTCTTAAGACA+TGG - chr3_1:86016478-86016497 None:intergenic 20.0%
!!! AAATAAGAATAAAAGCACTT+TGG + chr3_1:86016512-86016531 Msa0383230:three_prime_UTR 20.0%
! TTAGTAGTAGTTTATGAAAG+TGG + chr3_1:86011051-86011070 Msa0383230:five_prime_UTR 25.0%
! TCAAACACAAATAACAAGTA+TGG - chr3_1:86011238-86011257 None:intergenic 25.0%
!! TTTTTGCTTATAATAGTGAC+CGG - chr3_1:86011325-86011344 None:intergenic 25.0%
!! TTTTCAAAAAGTTAACGGAA+AGG - chr3_1:86012485-86012504 None:intergenic 25.0%
! TGTTTCCATTTGTATGAATT+CGG + chr3_1:86011933-86011952 Msa0383230:intron 25.0%
!! TTTTCAAAAAGTTAACGGAA+AGG + chr3_1:86012485-86012504 Msa0383230:intron 25.0%
! TTAAGGCTTAATATATACTG+AGG - chr3_1:86012604-86012623 None:intergenic 25.0%
!! TTATTAGTTTAAGAAACCTG+AGG + chr3_1:86012876-86012895 Msa0383230:intron 25.0%
! AACTAAAATAAATCTACCTC+AGG - chr3_1:86012895-86012914 None:intergenic 25.0%
!! GTTATTGCTAAATTGTTTTC+GGG + chr3_1:86013392-86013411 Msa0383230:intron 25.0%
! CTAAATATGTTTATACATGC+AGG + chr3_1:86013422-86013441 Msa0383230:intron 25.0%
! GATTGAAAAGCAAATAGTAT+GGG - chr3_1:86013711-86013730 None:intergenic 25.0%
! AGATTGAAAAGCAAATAGTA+TGG - chr3_1:86013712-86013731 None:intergenic 25.0%
!!! TAATTTTTTACGATGGCAAA+GGG - chr3_1:86013742-86013761 None:intergenic 25.0%
!!! TTAATTTTTTACGATGGCAA+AGG - chr3_1:86013743-86013762 None:intergenic 25.0%
! TTAAAACTCTCGAATTTCTT+GGG + chr3_1:86013982-86014001 Msa0383230:intron 25.0%
! CAAATTTCATAGACAACTTT+AGG + chr3_1:86014067-86014086 Msa0383230:intron 25.0%
! ACTTATGACTTAGAATGAAA+TGG + chr3_1:86014106-86014125 Msa0383230:intron 25.0%
! CAAAATTAATAACTGTTTGG+AGG - chr3_1:86014503-86014522 None:intergenic 25.0%
!!! CAAATTGGTTAGCTTATTAT+CGG - chr3_1:86014776-86014795 None:intergenic 25.0%
! TTTAGCTAACTTAACCAAAT+TGG - chr3_1:86014791-86014810 None:intergenic 25.0%
! TGATTTATATATCGAGACTT+TGG + chr3_1:86014911-86014930 Msa0383230:intron 25.0%
! TACTCAACTTTGTTGAAAAA+CGG + chr3_1:86015146-86015165 Msa0383230:CDS 25.0%
! CATAAATTCAACAAATTGAC+AGG - chr3_1:86015261-86015280 None:intergenic 25.0%
!!! CTGTCAATTTGTTGAATTTA+TGG + chr3_1:86015259-86015278 Msa0383230:intron 25.0%
!!! TCAATTTGTTGAATTTATGG+AGG + chr3_1:86015262-86015281 Msa0383230:intron 25.0%
! ACAAATCACTACAATTGAAA+TGG - chr3_1:86015455-86015474 None:intergenic 25.0%
! CAAAATCAAATACAAAGTTC+AGG - chr3_1:86015478-86015497 None:intergenic 25.0%
! TCAATACAAACAAGTCTAAA+AGG - chr3_1:86015628-86015647 None:intergenic 25.0%
! TATAGAAATAGTCTATACAC+AGG + chr3_1:86015844-86015863 Msa0383230:intron 25.0%
! ATAGAAATAGTCTATACACA+GGG + chr3_1:86015845-86015864 Msa0383230:intron 25.0%
! AAATAATGATCAATCCTGTT+TGG - chr3_1:86015902-86015921 None:intergenic 25.0%
! TTTACGTTGTAATGTTTGTA+TGG + chr3_1:86016334-86016353 Msa0383230:three_prime_UTR 25.0%
! TTACGTTGTAATGTTTGTAT+GGG + chr3_1:86016335-86016354 Msa0383230:three_prime_UTR 25.0%
!! CTAATTTTCAATTGCCATTA+AGG - chr3_1:86016410-86016429 None:intergenic 25.0%
! CTTAATGGCAATTGAAAATT+AGG + chr3_1:86016408-86016427 Msa0383230:three_prime_UTR 25.0%
TAGTAGTTTATGAAAGTGGT+GGG + chr3_1:86011055-86011074 Msa0383230:five_prime_UTR 30.0%
AACAAGTATGGAAGAAAGTA+AGG - chr3_1:86011226-86011245 None:intergenic 30.0%
AAAAATAAGTTAAGGGACCT+GGG - chr3_1:86012584-86012603 None:intergenic 30.0%
AAAAAATAAGTTAAGGGACC+TGG - chr3_1:86012583-86012602 None:intergenic 30.0%
AAAAAACGTTAACTCTGAAC+AGG + chr3_1:86011504-86011523 Msa0383230:intron 30.0%
GGACATTTCATATGTGTATT+GGG - chr3_1:86011543-86011562 None:intergenic 30.0%
TGGACATTTCATATGTGTAT+TGG - chr3_1:86011544-86011563 None:intergenic 30.0%
ATGTGTGGAATATTTGTGTA+TGG - chr3_1:86011694-86011713 None:intergenic 30.0%
GAAATTGAAAAAGGAATGTG+TGG - chr3_1:86011709-86011728 None:intergenic 30.0%
TCTTGATGAATCTAAGAGAT+GGG - chr3_1:86011773-86011792 None:intergenic 30.0%
ATCTTGATGAATCTAAGAGA+TGG - chr3_1:86011774-86011793 None:intergenic 30.0%
! TTGAAGAAACAAGAACGTTT+TGG - chr3_1:86011902-86011921 None:intergenic 30.0%
! TTCTTGTTTCTTCAACAATC+CGG + chr3_1:86011907-86011926 Msa0383230:intron 30.0%
! TATGAGCTTTCGATTTTGTT+TGG + chr3_1:86012150-86012169 Msa0383230:intron 30.0%
!! TTTCGATTTTGTTTGGATGA+TGG + chr3_1:86012157-86012176 Msa0383230:intron 30.0%
GGATTTGATTGTCATGAAAA+TGG + chr3_1:86012178-86012197 Msa0383230:intron 30.0%
! GATTGTCATGAAAATGGATT+TGG + chr3_1:86012184-86012203 Msa0383230:intron 30.0%
! TCATGAAAATGGATTTGGAA+TGG + chr3_1:86012189-86012208 Msa0383230:intron 30.0%
TGTTTGAAGGAAGTTTCAAT+TGG + chr3_1:86012232-86012251 Msa0383230:intron 30.0%
! ATTGTAGTTTGCATAACTGT+TGG + chr3_1:86012256-86012275 Msa0383230:intron 30.0%
TCCAAGAAAACAACAAATCT+GGG - chr3_1:86012319-86012338 None:intergenic 30.0%
!!! ATTTGTTGTTTTCTTGGAGA+GGG + chr3_1:86012321-86012340 Msa0383230:intron 30.0%
!! ATTCTTTTGATTCATGTAGC+TGG + chr3_1:86012728-86012747 Msa0383230:intron 30.0%
! ATGGATTATAGGCAATAAGT+CGG - chr3_1:86012966-86012985 None:intergenic 30.0%
AAATATCTCATTGCAACAAG+GGG - chr3_1:86013816-86013835 None:intergenic 30.0%
CAAATATCTCATTGCAACAA+GGG - chr3_1:86013817-86013836 None:intergenic 30.0%
TCAAATATCTCATTGCAACA+AGG - chr3_1:86013818-86013837 None:intergenic 30.0%
CTGTTCAGATATTTCATGTA+TGG + chr3_1:86013909-86013928 Msa0383230:intron 30.0%
TTCAGATATTTCATGTATGG+TGG + chr3_1:86013912-86013931 Msa0383230:intron 30.0%
GTTAAAACTCTCGAATTTCT+TGG + chr3_1:86013981-86014000 Msa0383230:intron 30.0%
AAAATTGCAGATCTTCAATG+AGG - chr3_1:86014287-86014306 None:intergenic 30.0%
!!! CTGTTGTTATTTTTCTGATG+AGG + chr3_1:86014320-86014339 Msa0383230:intron 30.0%
! AATGAATGCTCCAATTTTTC+AGG + chr3_1:86014350-86014369 Msa0383230:intron 30.0%
GAACATATCACCTGAAAAAT+TGG - chr3_1:86014363-86014382 None:intergenic 30.0%
CGATAATAAGCTAACCAATT+TGG + chr3_1:86014774-86014793 Msa0383230:intron 30.0%
GAAAAAGTCATATCAACCTT+GGG - chr3_1:86014844-86014863 None:intergenic 30.0%
AGAAAAAGTCATATCAACCT+TGG - chr3_1:86014845-86014864 None:intergenic 30.0%
!!! TCTTGTTTTTCCTTTTCTCT+TGG + chr3_1:86014864-86014883 Msa0383230:intron 30.0%
!!! TGTTTTAAAAACAGAACTGG+AGG + chr3_1:86014979-86014998 Msa0383230:intron 30.0%
!!! GTTTTAAAAACAGAACTGGA+GGG + chr3_1:86014980-86014999 Msa0383230:intron 30.0%
AAGAAAAACAGTTATGAAGC+AGG - chr3_1:86015100-86015119 None:intergenic 30.0%
TCTTCATAACTTCTTTGCAT+AGG + chr3_1:86015116-86015135 Msa0383230:intron 30.0%
ATTGTTACCTCAAAACAAAC+AGG - chr3_1:86015209-86015228 None:intergenic 30.0%
TTTGTGATATGTCAAAGGTT+TGG + chr3_1:86015533-86015552 Msa0383230:intron 30.0%
TTGTGATATGTCAAAGGTTT+GGG + chr3_1:86015534-86015553 Msa0383230:intron 30.0%
GCTTATCTCAGTTTATCTAT+TGG - chr3_1:86015783-86015802 None:intergenic 30.0%
!!! ATTAAGCTGTTTTTCCAAAC+AGG + chr3_1:86015885-86015904 Msa0383230:intron 30.0%
TCATCATGTACATAGTTGTA+TGG - chr3_1:86015944-86015963 None:intergenic 30.0%
TATAACACAAGACAAACAAG+AGG + chr3_1:86016096-86016115 Msa0383230:CDS 30.0%
ATTAGGCTGTAATAAACTTG+TGG + chr3_1:86016425-86016444 Msa0383230:three_prime_UTR 30.0%
! TTTTTCTTAAGACATGGGAA+CGG - chr3_1:86016472-86016491 None:intergenic 30.0%
! CACTTTGGATAGTTGTATTT+TGG + chr3_1:86016527-86016546 Msa0383230:three_prime_UTR 30.0%
!! CAAAAGCACTGTTTCAAAAC+AGG - chr3_1:86011001-86011020 None:intergenic 35.0%
!!! CTGTTTTGAAACAGTGCTTT+TGG + chr3_1:86010999-86011018 Msa0383230:five_prime_UTR 35.0%
!! TTTGAAACAGTGCTTTTGGA+AGG + chr3_1:86011003-86011022 Msa0383230:five_prime_UTR 35.0%
GTAGTAGTTTATGAAAGTGG+TGG + chr3_1:86011054-86011073 Msa0383230:five_prime_UTR 35.0%
AGTAGTTTATGAAAGTGGTG+GGG + chr3_1:86011056-86011075 Msa0383230:five_prime_UTR 35.0%
ACAAAACAAAGAAGGATGGA+TGG - chr3_1:86011113-86011132 None:intergenic 35.0%
TAAAGGCTTAATATATCCCC+AGG + chr3_1:86011367-86011386 Msa0383230:intron 35.0%
AAAATAAGTTAAGGGACCTG+GGG - chr3_1:86011386-86011405 None:intergenic 35.0%
GAAAGGACCAACTAAGTAAA+CGG - chr3_1:86012502-86012521 None:intergenic 35.0%
TGAAATGTCCAAAATACCCT+TGG + chr3_1:86011553-86011572 Msa0383230:intron 35.0%
!!! TGTTTTGAAGAGAGAAGAAG+AGG - chr3_1:86011620-86011639 None:intergenic 35.0%
AAACACATATCTGTGCTAGT+AGG + chr3_1:86011820-86011839 Msa0383230:intron 35.0%
AATTGCAGAGAAGAAAAGGA+AGG - chr3_1:86011859-86011878 None:intergenic 35.0%
! TTCCTTTTCTTCTCTGCAAT+TGG + chr3_1:86011858-86011877 Msa0383230:intron 35.0%
CATACAAATGGAAACAGAAC+CGG - chr3_1:86011929-86011948 None:intergenic 35.0%
CATCACCGAATTCATACAAA+TGG - chr3_1:86011941-86011960 None:intergenic 35.0%
TGTTGATGCTAGATTCGAAA+TGG + chr3_1:86012013-86012032 Msa0383230:intron 35.0%
! CTAGATTCGAAATGGTTTGT+TGG + chr3_1:86012021-86012040 Msa0383230:intron 35.0%
!! TTCGAAATGGTTTGTTGGAA+AGG + chr3_1:86012026-86012045 Msa0383230:intron 35.0%
!! TCGAAATGGTTTGTTGGAAA+GGG + chr3_1:86012027-86012046 Msa0383230:intron 35.0%
TGGTGAACTTTGAACTGATT+TGG + chr3_1:86012209-86012228 Msa0383230:intron 35.0%
!! TGAACTGATTTGGTGTTTGA+AGG + chr3_1:86012219-86012238 Msa0383230:intron 35.0%
!!! ACCCAGATTTGTTGTTTTCT+TGG + chr3_1:86012315-86012334 Msa0383230:intron 35.0%
CTCCAAGAAAACAACAAATC+TGG - chr3_1:86012320-86012339 None:intergenic 35.0%
!!! GATTTGTTGTTTTCTTGGAG+AGG + chr3_1:86012320-86012339 Msa0383230:intron 35.0%
GAAAGGACCAACTAAGTAAA+TGG + chr3_1:86012502-86012521 Msa0383230:intron 35.0%
ACCAACTAAGTAAATGGAAG+AGG + chr3_1:86012508-86012527 Msa0383230:intron 35.0%
TCCTCTTCCATTTACTTAGT+TGG - chr3_1:86012512-86012531 None:intergenic 35.0%
TTGCTTATAATAATGACCGG+AGG + chr3_1:86012695-86012714 Msa0383230:intron 35.0%
TGCTTATAATAATGACCGGA+GGG + chr3_1:86012696-86012715 Msa0383230:intron 35.0%
AAGAATATATGTACACCCTC+CGG - chr3_1:86012714-86012733 None:intergenic 35.0%
CATGAACATGAACATGAACA+TGG - chr3_1:86012922-86012941 None:intergenic 35.0%
CATGTTCATGTTCATGTTCA+TGG + chr3_1:86012920-86012939 Msa0383230:intron 35.0%
CAATAAGTCGGTGACATATT+TGG - chr3_1:86012954-86012973 None:intergenic 35.0%
! TGATGTGGCATATGGATTAT+AGG - chr3_1:86012977-86012996 None:intergenic 35.0%
TCGATAATTGATGTGGCATA+TGG - chr3_1:86012985-86013004 None:intergenic 35.0%
CATTTGATAAGTAACTGTCC+AGG + chr3_1:86013306-86013325 Msa0383230:intron 35.0%
AAAAATTCAAGGTCTGAACC+TGG - chr3_1:86013327-86013346 None:intergenic 35.0%
! AGGTTCAGACCTTGAATTTT+TGG + chr3_1:86013326-86013345 Msa0383230:intron 35.0%
!!! AGACCTTGAATTTTTGGAAC+AGG + chr3_1:86013332-86013351 Msa0383230:intron 35.0%
!!! CTTGAATTTTTGGAACAGGT+CGG + chr3_1:86013336-86013355 Msa0383230:intron 35.0%
TCTGAAAATAGTGAGCATCA+TGG + chr3_1:86013487-86013506 Msa0383230:exon 35.0%
CTGAAAATAGTGAGCATCAT+GGG + chr3_1:86013488-86013507 Msa0383230:exon 35.0%
TCATTGCACTCAAATTGAAG+AGG - chr3_1:86013539-86013558 None:intergenic 35.0%
TTCAATTTGAGTGCAATGAC+AGG + chr3_1:86013540-86013559 Msa0383230:CDS 35.0%
CAATGACAGGAATCTTATCA+CGG + chr3_1:86013553-86013572 Msa0383230:CDS 35.0%
! TCATTGATCTTTTTGTGGTC+TGG - chr3_1:86013644-86013663 None:intergenic 35.0%
! GCAAGTCATTGATCTTTTTG+TGG - chr3_1:86013649-86013668 None:intergenic 35.0%
AGAGAGGATATATGGAGTAT+GGG + chr3_1:86013672-86013691 Msa0383230:CDS 35.0%
TCTGTAGATGTCAACATTAC+CGG + chr3_1:86013771-86013790 Msa0383230:intron 35.0%
CACAGTCTAGTATTTCATGA+TGG + chr3_1:86013878-86013897 Msa0383230:intron 35.0%
CTTATTGCTTGCCATAAATG+AGG + chr3_1:86013939-86013958 Msa0383230:intron 35.0%
!!! TGCATGGGCAATTATTTTTG+CGG + chr3_1:86014674-86014693 Msa0383230:CDS 35.0%
! TGTTGCTTAACCAAGAGAAA+AGG - chr3_1:86014877-86014896 None:intergenic 35.0%
!!! AGACTTTGGTGCACTTTTTT+TGG + chr3_1:86014925-86014944 Msa0383230:intron 35.0%
!!! AGATTGTCCTGTTTGTTTTG+AGG + chr3_1:86015199-86015218 Msa0383230:CDS 35.0%
CATAACTACACTACCGAAAT+TGG + chr3_1:86015289-86015308 Msa0383230:intron 35.0%
AATACTGCGATCACCAATTT+CGG - chr3_1:86015305-86015324 None:intergenic 35.0%
TTTCATTCAGACAGCTCTTA+TGG - chr3_1:86015377-86015396 None:intergenic 35.0%
! AAACTGACTTTGAGCACAAA+GGG - chr3_1:86015516-86015535 None:intergenic 35.0%
GTCAGTTTGTGATATGTCAA+AGG + chr3_1:86015528-86015547 Msa0383230:CDS 35.0%
GGTTTGGGAAAAAATTGACT+TGG + chr3_1:86015549-86015568 Msa0383230:intron 35.0%
!! GGAAAAAATTGACTTGGAAC+TGG + chr3_1:86015555-86015574 Msa0383230:intron 35.0%
TTAAGATATGGTTCAGGCAT+CGG - chr3_1:86015589-86015608 None:intergenic 35.0%
AAAGTCAAATTGGGTCTCTT+TGG - chr3_1:86015810-86015829 None:intergenic 35.0%
! ATTTTGTTCATATGCCATCG+TGG + chr3_1:86015918-86015937 Msa0383230:intron 35.0%
CTCCATTCTTATGAAGATAG+TGG + chr3_1:86016171-86016190 Msa0383230:three_prime_UTR 35.0%
AGCCACTATCTTCATAAGAA+TGG - chr3_1:86016176-86016195 None:intergenic 35.0%
ATCGGTTGCATTGAATATGA+TGG + chr3_1:86016206-86016225 Msa0383230:three_prime_UTR 35.0%
ACGTAAACAATAGAGCACAA+GGG - chr3_1:86016321-86016340 None:intergenic 35.0%
AACGTAAACAATAGAGCACA+AGG - chr3_1:86016322-86016341 None:intergenic 35.0%
!! TGTTGCTTTGATGAACACAT+AGG + chr3_1:86016383-86016402 Msa0383230:three_prime_UTR 35.0%
! TTTTCTTAAGACATGGGAAC+GGG - chr3_1:86016471-86016490 None:intergenic 35.0%
!!! TGGATAGTTGTATTTTGGCA+TGG + chr3_1:86016532-86016551 Msa0383230:three_prime_UTR 35.0%
!!! GGATAGTTGTATTTTGGCAT+GGG + chr3_1:86016533-86016552 Msa0383230:three_prime_UTR 35.0%
GTAGTTTATGAAAGTGGTGG+GGG + chr3_1:86011057-86011076 Msa0383230:five_prime_UTR 40.0%
GCAGACAAAACAAAGAAGGA+TGG - chr3_1:86011117-86011136 None:intergenic 40.0%
!!! TCCTTCTTTGTTTTGTCTGC+TGG + chr3_1:86011117-86011136 Msa0383230:five_prime_UTR 40.0%
!!! CCTTCTTTGTTTTGTCTGCT+GGG + chr3_1:86011118-86011137 Msa0383230:five_prime_UTR 40.0%
TTAGAGTTGGAGGATATGAG+AGG - chr3_1:86011192-86011211 None:intergenic 40.0%
TCTCATATCCTCCAACTCTA+AGG + chr3_1:86011191-86011210 Msa0383230:five_prime_UTR 40.0%
TGCTTATAATAGTGACCGGA+GGG - chr3_1:86011321-86011340 None:intergenic 40.0%
TTGCTTATAATAGTGACCGG+AGG - chr3_1:86011322-86011341 None:intergenic 40.0%
TCCTCTTCCGTTTACTTAGT+TGG + chr3_1:86011459-86011478 Msa0383230:intron 40.0%
ACCAACTAAGTAAACGGAAG+AGG - chr3_1:86011463-86011482 None:intergenic 40.0%
AAACGTTAACTCTGAACAGG+TGG + chr3_1:86011507-86011526 Msa0383230:intron 40.0%
!!! GAAGAAAGCCAAGGGTATTT+TGG - chr3_1:86011564-86011583 None:intergenic 40.0%
GACCAATTGCAGAGAAGAAA+AGG - chr3_1:86011863-86011882 None:intergenic 40.0%
TTTCTTCTCTGCAATTGGTC+TGG + chr3_1:86011863-86011882 Msa0383230:intron 40.0%
TAGCATCAACAGAACTGGAT+CGG - chr3_1:86012004-86012023 None:intergenic 40.0%
GAATCTAGCATCAACAGAAC+TGG - chr3_1:86012009-86012028 None:intergenic 40.0%
AGTAAGCTGAATCCAACACA+GGG - chr3_1:86012073-86012092 None:intergenic 40.0%
TGGATTCAGCTTACTGTTGA+CGG + chr3_1:86012078-86012097 Msa0383230:intron 40.0%
! GGTGTCATGATTGTTGATGT+AGG + chr3_1:86012277-86012296 Msa0383230:intron 40.0%
GATTGTTGATGTAGGTTAGC+TGG + chr3_1:86012285-86012304 Msa0383230:intron 40.0%
AGAGGGAAGAAGAAGAAGAA+AGG + chr3_1:86012338-86012357 Msa0383230:intron 40.0%
GAGGGAAGAAGAAGAAGAAA+GGG + chr3_1:86012339-86012358 Msa0383230:intron 40.0%
AGAAGAAGAAGAAAGGGAAG+AGG + chr3_1:86012345-86012364 Msa0383230:intron 40.0%
GGAAGAGGAAGAATAGAACT+GGG + chr3_1:86012360-86012379 Msa0383230:intron 40.0%
! GGAAGAATAGAACTGGGTTT+TGG + chr3_1:86012366-86012385 Msa0383230:intron 40.0%
!!! AATAGAACTGGGTTTTGGAG+AGG + chr3_1:86012371-86012390 Msa0383230:intron 40.0%
!!! ATAGAACTGGGTTTTGGAGA+GGG + chr3_1:86012372-86012391 Msa0383230:intron 40.0%
AGAAGAAGAAAGGGGTAGAA+TGG + chr3_1:86012396-86012415 Msa0383230:intron 40.0%
AAACGTTAACTCTGTACACG+TGG - chr3_1:86012464-86012483 None:intergenic 40.0%
GTAAATGGAAGAGGACTTAC+AGG + chr3_1:86012517-86012536 Msa0383230:intron 40.0%
TGTCAGACACTTTAGTAGAC+TGG + chr3_1:86012848-86012867 Msa0383230:intron 40.0%
CGACCTGTTCCAAAAATTCA+AGG - chr3_1:86013338-86013357 None:intergenic 40.0%
GTTTATACATGCAGGTCACT+AGG + chr3_1:86013430-86013449 Msa0383230:intron 40.0%
AGTGCAAGCTATCTAGAAAC+AGG - chr3_1:86013463-86013482 None:intergenic 40.0%
TGCATGTGCTCTTCATTTGA+GGG - chr3_1:86013599-86013618 None:intergenic 40.0%
ATGCATGTGCTCTTCATTTG+AGG - chr3_1:86013600-86013619 None:intergenic 40.0%
! TCAAATGAAGAGCACATGCA+TGG + chr3_1:86013599-86013618 Msa0383230:CDS 40.0%
! TCTTTTTGTGGTCTGGTGAT+TGG - chr3_1:86013637-86013656 None:intergenic 40.0%
GAGAGAGGATATATGGAGTA+TGG + chr3_1:86013671-86013690 Msa0383230:CDS 40.0%
! CTTTTGCCTCATTGTGACAA+TGG - chr3_1:86013847-86013866 None:intergenic 40.0%
! CTGCAGCATCACTTTCATTT+TGG + chr3_1:86014152-86014171 Msa0383230:intron 40.0%
AACATACCTGTTTGACCTGA+TGG - chr3_1:86014250-86014269 None:intergenic 40.0%
ATTGCAGATCTTCAATGAGG+TGG - chr3_1:86014284-86014303 None:intergenic 40.0%
CAGCAGAACTGTATCAATTG+CGG + chr3_1:86014647-86014666 Msa0383230:CDS 40.0%
!!! GCATGGGCAATTATTTTTGC+GGG + chr3_1:86014675-86014694 Msa0383230:CDS 40.0%
AAATTCCACAACCACTGCAA+TGG - chr3_1:86014742-86014761 None:intergenic 40.0%
AATGTATTGTCCCTATCCCA+AGG + chr3_1:86014825-86014844 Msa0383230:intron 40.0%
GTCATATCAACCTTGGGATA+GGG - chr3_1:86014838-86014857 None:intergenic 40.0%
AGTCATATCAACCTTGGGAT+AGG - chr3_1:86014839-86014858 None:intergenic 40.0%
! GACAGCTCTTATGGATTGTA+TGG - chr3_1:86015368-86015387 None:intergenic 40.0%
AGAGCTGTCTGAATGAAATG+AGG + chr3_1:86015379-86015398 Msa0383230:CDS 40.0%
GAGCTGTCTGAATGAAATGA+GGG + chr3_1:86015380-86015399 Msa0383230:CDS 40.0%
! CAAACTGACTTTGAGCACAA+AGG - chr3_1:86015517-86015536 None:intergenic 40.0%
CAAATTGGGTCTCTTTGGAT+TGG - chr3_1:86015805-86015824 None:intergenic 40.0%
! CAAGAGAGTGCATCAAATCT+TGG - chr3_1:86015988-86016007 None:intergenic 40.0%
ATTTGATGCACTCTCTTGAC+AGG + chr3_1:86015990-86016009 Msa0383230:intron 40.0%
TGGATCCTTTGCAATGATTG+CGG + chr3_1:86016015-86016034 Msa0383230:CDS 40.0%
TTTGTGCGACAAGATGAAAC+TGG - chr3_1:86016056-86016075 None:intergenic 40.0%
TCAATGCAACCGATGCAAAT+GGG - chr3_1:86016200-86016219 None:intergenic 40.0%
TTCAATGCAACCGATGCAAA+TGG - chr3_1:86016201-86016220 None:intergenic 40.0%
! ATGGAAATGCATGAGTTGAG+CGG + chr3_1:86016225-86016244 Msa0383230:three_prime_UTR 40.0%
GTAAACAATAGAGCACAAGG+GGG - chr3_1:86016319-86016338 None:intergenic 40.0%
CGTAAACAATAGAGCACAAG+GGG - chr3_1:86016320-86016339 None:intergenic 40.0%
ATGAACACATAGGCCCTTAA+TGG + chr3_1:86016393-86016412 Msa0383230:three_prime_UTR 40.0%
GAAGGATGGATGGATCAAAG+AGG - chr3_1:86011103-86011122 None:intergenic 45.0%
CCCAGCAGACAAAACAAAGA+AGG - chr3_1:86011121-86011140 None:intergenic 45.0%
!!! TTTGTTTTGTCTGCTGGGTC+AGG + chr3_1:86011123-86011142 Msa0383230:five_prime_UTR 45.0%
!! TTGTTTTGTCTGCTGGGTCA+GGG + chr3_1:86011124-86011143 Msa0383230:five_prime_UTR 45.0%
ATATGAGAGGAGAGAATGGC+CGG - chr3_1:86011179-86011198 None:intergenic 45.0%
GAGGATATGAGAGGAGAGAA+TGG - chr3_1:86011183-86011202 None:intergenic 45.0%
ACAACGAACCTTAGAGTTGG+AGG - chr3_1:86011202-86011221 None:intergenic 45.0%
GGAACAACGAACCTTAGAGT+TGG - chr3_1:86011205-86011224 None:intergenic 45.0%
GGTGAGTAATATACACCCTC+CGG + chr3_1:86011303-86011322 Msa0383230:intron 45.0%
GTAAACGGAAGAGGACTTAC+AGG - chr3_1:86011454-86011473 None:intergenic 45.0%
AGAGGGAAGAAGAAAGCCAA+GGG - chr3_1:86011572-86011591 None:intergenic 45.0%
AAGAGGGAAGAAGAAAGCCA+AGG - chr3_1:86011573-86011592 None:intergenic 45.0%
! AGAAGAAGAGGTTCTGACGA+GGG - chr3_1:86011608-86011627 None:intergenic 45.0%
CATATCTGTGCTAGTAGGCT+CGG + chr3_1:86011825-86011844 Msa0383230:intron 45.0%
AAGAACTCGATTCCCTGTGT+TGG + chr3_1:86012058-86012077 Msa0383230:intron 45.0%
CAGTAAGCTGAATCCAACAC+AGG - chr3_1:86012074-86012093 None:intergenic 45.0%
AACACACCACCACTAACAGT+TGG - chr3_1:86012130-86012149 None:intergenic 45.0%
GGGAAGAGGAAGAATAGAAC+TGG + chr3_1:86012359-86012378 Msa0383230:intron 45.0%
TGGAGAGGGAAGAAGAAGAA+AGG + chr3_1:86012335-86012354 Msa0383230:intron 45.0%
GGAGAGGGAAGAAGAAGAAA+GGG + chr3_1:86012387-86012406 Msa0383230:intron 45.0%
GAGAGGGAAGAAGAAGAAAG+GGG + chr3_1:86012388-86012407 Msa0383230:intron 45.0%
TAGCCATGTCCTCAAGTGAT+TGG + chr3_1:86012424-86012443 Msa0383230:intron 45.0%
GCACTCAAATTGAAGAGGCT+CGG - chr3_1:86013534-86013553 None:intergenic 45.0%
! ATCAATGACTTGCGAGAGAG+AGG + chr3_1:86013656-86013675 Msa0383230:CDS 45.0%
CTTGCGAGAGAGAGGATATA+TGG + chr3_1:86013664-86013683 Msa0383230:CDS 45.0%
GATGTCAACATTACCGGAGA+AGG + chr3_1:86013777-86013796 Msa0383230:intron 45.0%
TTGTCGCCATTGTCACAATG+AGG + chr3_1:86013838-86013857 Msa0383230:CDS 45.0%
ATACCTGTTTGACCTGATGG+CGG - chr3_1:86014247-86014266 None:intergenic 45.0%
ACTCTGTGAGACTGAACAAG+AGG + chr3_1:86014383-86014402 Msa0383230:CDS 45.0%
CCTGGAAGCAGAAGATATCA+AGG - chr3_1:86014625-86014644 None:intergenic 45.0%
CCTTGATATCTTCTGCTTCC+AGG + chr3_1:86014622-86014641 Msa0383230:intron 45.0%
TGATACAGTTCTGCTGAACC+TGG - chr3_1:86014643-86014662 None:intergenic 45.0%
TATCAATTGCGGTGTGTGCA+TGG + chr3_1:86014658-86014677 Msa0383230:CDS 45.0%
ATCAATTGCGGTGTGTGCAT+GGG + chr3_1:86014659-86014678 Msa0383230:CDS 45.0%
TTCTTCCACTGCTACAAGTG+TGG + chr3_1:86015012-86015031 Msa0383230:CDS 45.0%
ACTTACCACACTTGTAGCAG+TGG - chr3_1:86015020-86015039 None:intergenic 45.0%
ACATAGTTGTATGGCCACGA+TGG - chr3_1:86015935-86015954 None:intergenic 45.0%
ATGCACTCTCTTGACAGGTT+TGG + chr3_1:86015995-86016014 Msa0383230:intron 45.0%
TTTCGCCGCAATCATTGCAA+AGG - chr3_1:86016023-86016042 None:intergenic 45.0%
TAGTGGCTACCCATTTGCAT+CGG + chr3_1:86016188-86016207 Msa0383230:three_prime_UTR 45.0%
! TGGAAATGCATGAGTTGAGC+GGG + chr3_1:86016226-86016245 Msa0383230:three_prime_UTR 45.0%
!! TTCATTGTGCTTGCTGTTGC+AGG + chr3_1:86016271-86016290 Msa0383230:three_prime_UTR 45.0%
TTTGGCATGGGAAAATCTGC+TGG + chr3_1:86016545-86016564 Msa0383230:three_prime_UTR 45.0%
!!! TAAAATAACTTTTTTTTTTA+TGG - chr3_1:86013050-86013069 None:intergenic 5.0%
GCAGTAAATGCTTGCGTGTC+AGG - chr3_1:86010972-86010991 None:intergenic 50.0%
! TGTTTTGTCTGCTGGGTCAG+GGG + chr3_1:86011125-86011144 Msa0383230:five_prime_UTR 50.0%
! AGAATGGCCGGTCTTGTGTT+CGG - chr3_1:86011167-86011186 None:intergenic 50.0%
AGGGAAGAAGAGAGGGAAGA+GGG - chr3_1:86011589-86011608 None:intergenic 50.0%
TCTGACGAGGGAAGAAGAGA+GGG - chr3_1:86011596-86011615 None:intergenic 50.0%
TTCTGACGAGGGAAGAAGAG+AGG - chr3_1:86011597-86011616 None:intergenic 50.0%
! GAGAAGAAGAGGTTCTGACG+AGG - chr3_1:86011609-86011628 None:intergenic 50.0%
TCAGCTCAGCCAACTGTTAG+TGG + chr3_1:86012118-86012137 Msa0383230:intron 50.0%
TGGCCAATCACTTGAGGACA+TGG - chr3_1:86012430-86012449 None:intergenic 50.0%
CAGGTTTGGCCAATCACTTG+AGG - chr3_1:86012436-86012455 None:intergenic 50.0%
! CTCAAGTGATTGGCCAAACC+TGG + chr3_1:86012434-86012453 Msa0383230:intron 50.0%
AGTGAGCATCATGGGAGAAG+TGG + chr3_1:86013496-86013515 Msa0383230:exon 50.0%
!! ACCGGAGAAGGTGTCGTATT+AGG + chr3_1:86013789-86013808 Msa0383230:CDS 50.0%
CCCTAATACGACACCTTCTC+CGG - chr3_1:86013793-86013812 None:intergenic 50.0%
!! CCGGAGAAGGTGTCGTATTA+GGG + chr3_1:86013790-86013809 Msa0383230:CDS 50.0%
TACCTGTTTGACCTGATGGC+GGG - chr3_1:86014246-86014265 None:intergenic 50.0%
AAGCAGCAGTACCATTGCAG+TGG + chr3_1:86014728-86014747 Msa0383230:CDS 50.0%
CAGTACCATTGCAGTGGTTG+TGG + chr3_1:86014734-86014753 Msa0383230:CDS 50.0%
GCAGTGGTTGTGGAATTTGC+AGG + chr3_1:86014744-86014763 Msa0383230:CDS 50.0%
GATGTCTCCGTGTTGCATTG+CGG + chr3_1:86015342-86015361 Msa0383230:CDS 50.0%
TGTATGGCCGCAATGCAACA+CGG - chr3_1:86015352-86015371 None:intergenic 50.0%
!! TTGTGCTTGCTGTTGCAGGT+TGG + chr3_1:86016275-86016294 Msa0383230:three_prime_UTR 50.0%
!! TGTGCTTGCTGTTGCAGGTT+GGG + chr3_1:86016276-86016295 Msa0383230:three_prime_UTR 50.0%
! TGGGTCAGGGGAGCTCTAAT+CGG + chr3_1:86011137-86011156 Msa0383230:five_prime_UTR 55.0%
GAGGGAAGAAGAGAGGGAAG+AGG - chr3_1:86011590-86011609 None:intergenic 55.0%
GCTCAGCCAACTGTTAGTGG+TGG + chr3_1:86012121-86012140 Msa0383230:intron 55.0%
TACACGTGGCAGTCCAGGTT+TGG - chr3_1:86012450-86012469 None:intergenic 55.0%
! ACCTGTTTGACCTGATGGCG+GGG - chr3_1:86014245-86014264 None:intergenic 55.0%
GAAAAACGGTCACCCTTGCG+TGG + chr3_1:86015160-86015179 Msa0383230:CDS 55.0%
GCATTGCTCCTTCCACGCAA+GGG - chr3_1:86015175-86015194 None:intergenic 55.0%
TGCATTGCTCCTTCCACGCA+AGG - chr3_1:86015176-86015195 None:intergenic 55.0%
!! GTGCTTGCTGTTGCAGGTTG+GGG + chr3_1:86016277-86016296 Msa0383230:three_prime_UTR 55.0%
! TGCAGGTTGGGGCAACTAGT+TGG + chr3_1:86016288-86016307 Msa0383230:three_prime_UTR 55.0%
CGGAGCTCCGAACACAAGAC+CGG + chr3_1:86011157-86011176 Msa0383230:five_prime_UTR 60.0%
CTCTGTACACGTGGCAGTCC+AGG - chr3_1:86012455-86012474 None:intergenic 60.0%
ACACGACATTCCCCGCCATC+AGG + chr3_1:86014232-86014251 Msa0383230:CDS 60.0%
TCCCCGCCATCAGGTCAAAC+AGG + chr3_1:86014241-86014260 Msa0383230:CDS 60.0%
AACGGTCACCCTTGCGTGGA+AGG + chr3_1:86015164-86015183 Msa0383230:CDS 60.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 86010969 86016593 86010969 ID=Msa0383230;Name=Msa0383230
chr3_1 mRNA 86010969 86016593 86010969 ID=Msa0383230-mRNA-1;Parent=Msa0383230;Name=Msa0383230-mRNA-1;_AED=0.08;_eAED=0.08;_QI=306|0.9|0.90|1|0.9|0.81|11|471|287
chr3_1 exon 86010969 86011212 86010969 ID=Msa0383230-mRNA-1:exon:22709;Parent=Msa0383230-mRNA-1
chr3_1 exon 86013444 86013693 86013444 ID=Msa0383230-mRNA-1:exon:22710;Parent=Msa0383230-mRNA-1
chr3_1 exon 86013778 86013865 86013778 ID=Msa0383230-mRNA-1:exon:22711;Parent=Msa0383230-mRNA-1
chr3_1 exon 86014203 86014262 86014203 ID=Msa0383230-mRNA-1:exon:22712;Parent=Msa0383230-mRNA-1
chr3_1 exon 86014372 86014404 86014372 ID=Msa0383230-mRNA-1:exon:22713;Parent=Msa0383230-mRNA-1
chr3_1 exon 86014644 86014765 86014644 ID=Msa0383230-mRNA-1:exon:22714;Parent=Msa0383230-mRNA-1
chr3_1 exon 86014993 86015033 86014993 ID=Msa0383230-mRNA-1:exon:22715;Parent=Msa0383230-mRNA-1
chr3_1 exon 86015138 86015220 86015138 ID=Msa0383230-mRNA-1:exon:22716;Parent=Msa0383230-mRNA-1
chr3_1 exon 86015321 86015412 86015321 ID=Msa0383230-mRNA-1:exon:22717;Parent=Msa0383230-mRNA-1
chr3_1 exon 86015504 86015549 86015504 ID=Msa0383230-mRNA-1:exon:22718;Parent=Msa0383230-mRNA-1
chr3_1 exon 86016012 86016593 86016012 ID=Msa0383230-mRNA-1:exon:22719;Parent=Msa0383230-mRNA-1
chr3_1 five_prime_UTR 86010969 86011212 86010969 ID=Msa0383230-mRNA-1:five_prime_utr;Parent=Msa0383230-mRNA-1
chr3_1 five_prime_UTR 86013444 86013505 86013444 ID=Msa0383230-mRNA-1:five_prime_utr;Parent=Msa0383230-mRNA-1
chr3_1 CDS 86013506 86013693 86013506 ID=Msa0383230-mRNA-1:cds;Parent=Msa0383230-mRNA-1
chr3_1 CDS 86013778 86013865 86013778 ID=Msa0383230-mRNA-1:cds;Parent=Msa0383230-mRNA-1
chr3_1 CDS 86014203 86014262 86014203 ID=Msa0383230-mRNA-1:cds;Parent=Msa0383230-mRNA-1
chr3_1 CDS 86014372 86014404 86014372 ID=Msa0383230-mRNA-1:cds;Parent=Msa0383230-mRNA-1
chr3_1 CDS 86014644 86014765 86014644 ID=Msa0383230-mRNA-1:cds;Parent=Msa0383230-mRNA-1
chr3_1 CDS 86014993 86015033 86014993 ID=Msa0383230-mRNA-1:cds;Parent=Msa0383230-mRNA-1
chr3_1 CDS 86015138 86015220 86015138 ID=Msa0383230-mRNA-1:cds;Parent=Msa0383230-mRNA-1
chr3_1 CDS 86015321 86015412 86015321 ID=Msa0383230-mRNA-1:cds;Parent=Msa0383230-mRNA-1
chr3_1 CDS 86015504 86015549 86015504 ID=Msa0383230-mRNA-1:cds;Parent=Msa0383230-mRNA-1
chr3_1 CDS 86016012 86016122 86016012 ID=Msa0383230-mRNA-1:cds;Parent=Msa0383230-mRNA-1
chr3_1 three_prime_UTR 86016123 86016593 86016123 ID=Msa0383230-mRNA-1:three_prime_utr;Parent=Msa0383230-mRNA-1
Gene Sequence

>Msa0383230

ATGGGAGAAGTGGCAGTAATGCACTCCGAGCCTCTTCAATTTGAGTGCAATGACAGGAATCTTATCACGGAGAAAGATGTGCATAATCTACCCTCAAATGAAGAGCACATGCATGGCGAAAAGTCTAGCCAATCACCAGACCACAAAAAGATCAATGACTTGCGAGAGAGAGGATATATGGAGTATGGATGTCAACATTACCGGAGAAGGTGTCGTATTAGGGCCCCTTGTTGCAATGAGATATTTGATTGTCGCCATTGTCACAATGAGGCAAAAAACAGCATCGACGTCAATCAGAAGCATAGACACGACATTCCCCGCCATCAGGTCAAACAGGTGATATGTTCACTCTGTGAGACTGAACAAGAGGTTCAGCAGAACTGTATCAATTGCGGTGTGTGCATGGGCAATTATTTTTGCGGGACATGTAAGCTCTTTGATGATGATGTATCTAAGCAGCAGTACCATTGCAGTGGTTGTGGAATTTGCAGAACTGGAGGGTCTGAAAATTTCTTCCACTGCTACAAGTGTGGTTGTTGCTACTCAACTTTGTTGAAAAACGGTCACCCTTGCGTGGAAGGAGCAATGCATCAAGATTGTCCTGTTTGTTTTGAGTATTTGTTTGAATCTGTCAACGATGTCTCCGTGTTGCATTGCGGCCATACAATCCATAAGAGCTGTCTGAATGAAATGAGGGAACATTTTCAGTATGCATGCCCTTTGTGCTCAAAGTCAGTTTGTGATATGTCAAAGGTTTGGATCCTTTGCAATGATTGCGGCGAAAATTCTCATGTCCAGTTTCATCTTGTCGCACAAAAGTGCTTGAACTGCAAATCTTATAACACAAGACAAACAAGAGGCTGA
Protein sequence

>Msa0383230

MGEVAVMHSEPLQFECNDRNLITEKDVHNLPSNEEHMHGEKSSQSPDHKKINDLRERGYMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAKNSIDVNQKHRHDIPRHQVKQVICSLCETEQEVQQNCINCGVCMGNYFCGTCKLFDDDVSKQQYHCSGCGICRTGGSENFFHCYKCGCCYSTLLKNGHPCVEGAMHQDCPVCFEYLFESVNDVSVLHCGHTIHKSCLNEMREHFQYACPLCSKSVCDMSKVWILCNDCGENSHVQFHLVAQKCLNCKSYNTRQTRG*