AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1162050

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1162050 MtrunA17_Chr7g0257731 90.741 270 20 2 116 385 349 613 2.80e-176 504
Msa1162050 MtrunA17_Chr1g0173521 67.407 270 63 1 116 385 552 796 6.24e-125 379
Msa1162050 MtrunA17_Chr5g0447201 43.438 320 139 4 65 384 481 758 2.45e-79 258
Msa1162050 MtrunA17_Chr4g0064311 47.148 263 108 5 116 375 590 824 1.18e-70 237
Msa1162050 MtrunA17_Chr3g0116641 43.825 251 117 2 115 365 507 733 4.54e-61 209
Msa1162050 MtrunA17_Chr5g0427081 60.417 144 57 0 119 262 8 151 1.06e-59 191
Msa1162050 MtrunA17_Chr4g0058701 35.039 254 134 4 123 373 541 766 8.09e-43 159
Msa1162050 MtrunA17_Chr3g0117141 36.250 240 124 4 123 359 549 762 1.46e-41 155
Msa1162050 MtrunA17_Chr6g0449521 32.950 261 142 5 123 380 550 780 9.88e-39 147
Msa1162050 MtrunA17_Chr7g0267991 34.677 248 129 3 123 366 622 840 1.95e-37 144
Msa1162050 MtrunA17_Chr7g0270181 32.800 250 131 4 123 366 127 345 2.05e-34 130
Msa1162050 MtrunA17_Chr8g0380141 46.392 97 52 0 123 219 613 709 1.49e-20 93.6
Msa1162050 MtrunA17_Chr1g0201161 28.641 206 109 5 176 375 739 912 5.19e-18 86.3
Msa1162050 MtrunA17_Chr1g0201161 50.000 58 29 0 123 180 617 674 1.75e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1162050 AT3G57520.1 59.871 309 105 4 78 384 480 771 1.61e-128 387
Msa1162050 AT3G57520.2 62.694 193 54 3 78 268 480 656 2.90e-78 254
Msa1162050 AT1G55740.1 41.615 322 146 6 65 385 474 754 1.98e-77 254
Msa1162050 AT5G20250.3 45.113 266 117 4 123 385 509 748 3.78e-70 234
Msa1162050 AT5G20250.1 45.113 266 117 4 123 385 509 748 3.78e-70 234
Msa1162050 AT5G20250.2 45.113 266 117 4 123 385 509 748 3.78e-70 234
Msa1162050 AT5G20250.4 45.113 266 117 4 123 385 604 843 8.55e-70 235
Msa1162050 AT4G01970.2 33.591 259 139 5 123 375 681 912 2.27e-41 155
Msa1162050 AT4G01970.1 33.591 259 139 5 123 375 634 865 2.61e-41 155
Msa1162050 AT5G40390.1 32.692 260 136 5 123 376 548 774 8.14e-38 145
Msa1162050 AT3G57520.3 50.000 86 25 3 78 161 480 549 5.76e-17 83.2

Find 248 sgRNAs with CRISPR-Local

Find 417 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGACTATAACTCAGAAAA+TGG 0.158595 7_4:-52437460 Msa1162050:CDS
AGCTGAGAGATTGGGAAAAT+TGG 0.176611 7_4:-52437292 Msa1162050:three_prime_UTR
CAGCTCCACCCCACAAATTT+TGG 0.194389 7_4:+52440870 None:intergenic
CACTGTCTTGCTTCCTCTAT+TGG 0.218826 7_4:-52441058 Msa1162050:five_prime_UTR
GTGAGAGGAAGTGGCAAGTT+TGG 0.230018 7_4:-52437538 Msa1162050:CDS
TCTAATATCTCCGTTGAAAA+TGG 0.232941 7_4:-52441679 Msa1162050:five_prime_UTR
TCCAGAACCTTTAGTGTTAC+TGG 0.237610 7_4:+52437884 None:intergenic
TAGAAGTTGAAAACCTTCTT+TGG 0.248800 7_4:+52439119 None:intergenic
AGAAGGCGGCGCTTGAAATA+AGG 0.251873 7_4:+52442204 None:intergenic
TAGCTGTACCTGACATAAAT+TGG 0.255466 7_4:+52438589 None:intergenic
TACTATGTTGACAGGGATTA+AGG 0.255952 7_4:-52439541 Msa1162050:five_prime_UTR
CTCTCAATAATTACCTCTTC+AGG 0.263798 7_4:+52439933 None:intergenic
TGTATGCAACAGACGAAATA+TGG 0.276352 7_4:+52438817 None:intergenic
GGTAATAACTACTACACTTT+TGG 0.284207 7_4:-52437323 Msa1162050:three_prime_UTR
GAAAGTTGAGAAATGTAAAT+TGG 0.294691 7_4:+52442701 None:intergenic
ATTGTTTGAAATGTTGAAAA+AGG 0.310430 7_4:-52436957 Msa1162050:three_prime_UTR
GGCATGCACTAGCTGGTTAT+TGG 0.312406 7_4:-52439283 Msa1162050:five_prime_UTR
CTTGCTACTGGTGCATTCAT+TGG 0.327320 7_4:-52441577 Msa1162050:five_prime_UTR
TCCGGTTCATGTGTTGCTTC+CGG 0.327355 7_4:-52441206 Msa1162050:five_prime_UTR
GTTTGTTGTCGGAGGCTCTA+TGG 0.328560 7_4:+52437647 None:intergenic
GCATGCACTAGCTGGTTATT+GGG 0.328612 7_4:-52439282 Msa1162050:five_prime_UTR
GTAGGAGAAGCATTCCCTTC+TGG 0.329888 7_4:-52442760 Msa1162050:five_prime_UTR
GCAAATGGAGTTTATAGCTT+TGG 0.334793 7_4:-52440839 Msa1162050:five_prime_UTR
GTGTTTAACTGCCAAGGTGC+TGG 0.339583 7_4:-52438196 Msa1162050:CDS
TACATGTCCTCTTGAGGAAC+TGG 0.342287 7_4:+52437418 None:intergenic
CTCAAGAGGACATGTATAAA+TGG 0.343824 7_4:-52437411 Msa1162050:CDS
TATCCCAATCAAACTCCTTT+TGG 0.345272 7_4:-52440796 Msa1162050:five_prime_UTR
TCCAGTAACACTAAAGGTTC+TGG 0.349503 7_4:-52437885 Msa1162050:CDS
TTAGCTTCATGTGGAGTAGA+TGG 0.351053 7_4:-52439077 Msa1162050:five_prime_UTR
GTTGTGCTCACTCCAGATTC+TGG 0.351752 7_4:-52441607 Msa1162050:five_prime_UTR
GAGTCGCGCGTAGGCCTTCC+AGG 0.352046 7_4:+52438396 None:intergenic
CATACCAAAAGGAGTTTGAT+TGG 0.358416 7_4:+52440792 None:intergenic
CTGTTAAATTCAGTTCCTTC+CGG 0.372458 7_4:-52440897 Msa1162050:intron
ATTGTTTATGCTTACAGATC+AGG 0.375493 7_4:-52438046 Msa1162050:intron
TTCTGGGACACCTTTCAGTA+TGG 0.381592 7_4:+52441633 None:intergenic
ATTTGATGGTGAGGTTGTTT+CGG 0.382497 7_4:-52437617 Msa1162050:CDS
GTTGCGGTTGTCGTTCGGTT+AGG 0.382622 7_4:+52437574 None:intergenic
TTCCGGTCTGCCAAAATTTG+TGG 0.382741 7_4:-52440880 Msa1162050:five_prime_UTR
AACCTGGTCCTATCTCTTGC+CGG 0.393609 7_4:+52438360 None:intergenic
GCAAGACCATTACCAGAATC+TGG 0.395635 7_4:+52441595 None:intergenic
TTACTTGGATTGGACAGAAA+TGG 0.398060 7_4:+52437849 None:intergenic
CAATAGTTGCGGTTGTCGTT+CGG 0.403594 7_4:+52437569 None:intergenic
CTCCGTTGAAAATGGAAACT+TGG 0.407133 7_4:-52441671 Msa1162050:five_prime_UTR
CATGCCGCAGCTCGCGCAAT+CGG 0.407273 7_4:-52438619 Msa1162050:CDS
CAAAGATAGTGAAGGGGAAG+GGG 0.407874 7_4:-52441100 Msa1162050:five_prime_UTR
CTTGCTAATTACAGGTTCCT+TGG 0.408729 7_4:+52437003 None:intergenic
AGCTTGTCTGTACATGGCCT+TGG 0.409675 7_4:-52439152 Msa1162050:five_prime_UTR
TCCGGTCTGCCAAAATTTGT+GGG 0.410177 7_4:-52440879 Msa1162050:five_prime_UTR
TTCTGAGTTATAGTCAAAAT+CGG 0.411763 7_4:+52437465 None:intergenic
AACAAACAAGAGCTATTTGA+TGG 0.419926 7_4:-52437631 Msa1162050:CDS
CCGCTGAAGTGTGCGGTAGA+TGG 0.424658 7_4:-52437496 Msa1162050:CDS
GTACCATGTAGCTGAGAGAT+TGG 0.427467 7_4:-52437301 Msa1162050:three_prime_UTR
CTGTGTTGAACATGTCCATC+AGG 0.430121 7_4:+52437695 None:intergenic
AAATAGCTCTTGTTTGTTGT+CGG 0.430180 7_4:+52437636 None:intergenic
GTTATAGTCAAAATCGGTTT+CGG 0.432030 7_4:+52437471 None:intergenic
TGTTCCATGCCAGTCGCTGC+TGG 0.432967 7_4:+52439248 None:intergenic
GAGAGTTTATGCAGCCAGAT+TGG 0.433623 7_4:-52438779 Msa1162050:CDS
TTGTTGATCCGGCAAGAGAT+AGG 0.436763 7_4:-52438368 Msa1162050:CDS
GGTATATCATTTGCAGCAAT+AGG 0.437403 7_4:-52437718 Msa1162050:CDS
ATATGGATGGTGTGGGAAGC+AGG 0.438745 7_4:+52438834 None:intergenic
AGAGTTTATGCAGCCAGATT+GGG 0.441087 7_4:-52438778 Msa1162050:CDS
GTTGCTTCCGGTTCAAGTTA+TGG 0.442102 7_4:-52441194 Msa1162050:five_prime_UTR
TGTTTGAAATATGTTGAGAT+TGG 0.442476 7_4:-52437060 Msa1162050:three_prime_UTR
ACTGGAATCGAAGCCCCTTT+CGG 0.442762 7_4:+52437902 None:intergenic
GCAAAGATAGTGAAGGGGAA+GGG 0.444337 7_4:-52441101 Msa1162050:five_prime_UTR
TTGACTATAACTCAGAAAAT+GGG 0.445435 7_4:-52437459 Msa1162050:CDS
GCCATTCAGCACCAGCTACT+TGG 0.446935 7_4:+52438080 None:intergenic
ACATGGAACATGTCCCAATC+TGG 0.449730 7_4:+52438765 None:intergenic
CTCACTCCAGATTCTGGTAA+TGG 0.450913 7_4:-52441601 Msa1162050:five_prime_UTR
ACCGGAAGCAACACATGAAC+CGG 0.451788 7_4:+52441205 None:intergenic
TCTGGTAATGGTCTTGCTAC+TGG 0.451944 7_4:-52441589 Msa1162050:five_prime_UTR
AGGAAGTTGGTTCTTCCTGA+TGG 0.453207 7_4:-52438441 Msa1162050:CDS
GTTCTCCGTGCTCAATTACC+TGG 0.455559 7_4:-52438414 Msa1162050:CDS
GAAGGCGGCGCTTGAAATAA+GGG 0.455724 7_4:+52442205 None:intergenic
TTGTGATGTCTTACTTGGAT+TGG 0.455784 7_4:+52437839 None:intergenic
ACATGTTTGGTTGGTGCACA+TGG 0.458709 7_4:-52440000 Msa1162050:five_prime_UTR
AGGTTTGCTACTATGTTGAC+AGG 0.461841 7_4:-52439549 Msa1162050:five_prime_UTR
GCTGAGAGATTGGGAAAATT+GGG 0.464220 7_4:-52437291 Msa1162050:three_prime_UTR
CGGAATGGACCTTCCAATAG+AGG 0.466223 7_4:+52441045 None:intergenic
AAATGTCTTACTTGACGGCT+TGG 0.467405 7_4:+52440674 None:intergenic
TAAGCAGACTGCTGTTGTGC+GGG 0.471205 7_4:-52438883 Msa1162050:CDS
GCTTGGTTGATGACTTCAAA+AGG 0.471651 7_4:+52440691 None:intergenic
TCATCCACCATAACTTGAAC+CGG 0.473225 7_4:+52441187 None:intergenic
GGAGTGAAGCCAGCAGCGAC+TGG 0.474090 7_4:-52439257 Msa1162050:five_prime_UTR
AGCAAAGATAGTGAAGGGGA+AGG 0.474157 7_4:-52441102 Msa1162050:five_prime_UTR
TTGAGGAACTGGGATGTAGA+AGG 0.475841 7_4:+52437429 None:intergenic
GGAGCTGTCATTAATGCAAA+TGG 0.476920 7_4:-52440854 Msa1162050:five_prime_UTR
ATTATTGAAACCCTTGGCGC+TGG 0.481937 7_4:-52439032 Msa1162050:CDS
GCCAGCCGTCATCTATGATA+AGG 0.482851 7_4:+52439776 None:intergenic
GGTATTTATTGAAATGTGTA+GGG 0.483772 7_4:-52437359 Msa1162050:three_prime_UTR
GTTTGATCTATTAAGGGCTG+TGG 0.485390 7_4:-52440185 Msa1162050:intron
AAATTTCAAAAGAGTAAGAA+TGG 0.489716 7_4:-52439510 Msa1162050:five_prime_UTR
CCAAACATGTCAAGAAAAGA+TGG 0.490392 7_4:+52440013 None:intergenic
GCCGCAGCTCGCGCAATCGG+TGG 0.492913 7_4:-52438616 Msa1162050:CDS
AAGCTGTCCATGACAATGTC+GGG 0.493090 7_4:+52439170 None:intergenic
GTGGTTGTCCAATTTATGTC+AGG 0.493704 7_4:-52438597 Msa1162050:intron
CAAAACATTATTGAAACCCT+TGG 0.493780 7_4:-52439038 Msa1162050:CDS
GCGGCATGATACTCTGCTGC+CGG 0.499718 7_4:+52438634 None:intergenic
ATACCAAAAGGAGTTTGATT+GGG 0.499728 7_4:+52440793 None:intergenic
TACAAACGTTACGGTAAGTT+CGG 0.499873 7_4:-52442669 Msa1162050:five_prime_UTR
CGCATCCATGATACATCTCC+CGG 0.500427 7_4:-52438148 Msa1162050:CDS
GTCTTGCTTCCTCTATTGGA+AGG 0.500955 7_4:-52441054 Msa1162050:five_prime_UTR
GCTTTGAAAGTGAGAGGAAG+TGG 0.501703 7_4:-52437547 Msa1162050:CDS
ATGGTGGATGACACAGAGAA+TGG 0.505089 7_4:-52441175 Msa1162050:five_prime_UTR
GCCACCATGTCCAGCGCCAA+GGG 0.505764 7_4:+52439022 None:intergenic
AGGCGATTCGATTACCGAAA+GGG 0.505972 7_4:-52437916 Msa1162050:CDS
TTCCCAATCTCTCAGCTACA+TGG 0.506398 7_4:+52437298 None:intergenic
GTTGATGACTTCAAAAGGAT+TGG 0.506485 7_4:+52440696 None:intergenic
GGTTGGTTTCCTAGTACTCC+CGG 0.507014 7_4:+52439191 None:intergenic
AAACCAAATCACATACCAAA+AGG 0.508434 7_4:+52440781 None:intergenic
TGTTTAACTGCCAAGGTGCT+GGG 0.509164 7_4:-52438195 Msa1162050:CDS
GAGCACAACGAACCGACATC+AGG 0.510486 7_4:-52439486 Msa1162050:five_prime_UTR
CGACTCACTCTTTGTTGATC+CGG 0.510909 7_4:-52438379 Msa1162050:CDS
TGGACAGAAATGTTTATGTA+TGG 0.510917 7_4:-52439304 Msa1162050:intron
AACAGAACATACTACATCCA+TGG 0.510943 7_4:+52437184 None:intergenic
GATCTCATCAACCAAGTAGC+TGG 0.511507 7_4:-52438091 Msa1162050:CDS
TATCTAAGCTACAAACGTTA+CGG 0.511518 7_4:-52442678 Msa1162050:five_prime_UTR
TTCGATTCCAGTAACACTAA+AGG 0.512811 7_4:-52437891 Msa1162050:CDS
TGGAACATGAACAAATGTAC+TGG 0.515027 7_4:-52438229 Msa1162050:CDS
TACCATGTAGCTGAGAGATT+GGG 0.515215 7_4:-52437300 Msa1162050:three_prime_UTR
GTGACTTCAGAGTCTACATC+CGG 0.516712 7_4:-52438653 Msa1162050:intron
TCCTTATCATAGATGACGGC+TGG 0.519332 7_4:-52439777 Msa1162050:five_prime_UTR
CACATGGTTTACATGCATGC+TGG 0.523137 7_4:-52440721 Msa1162050:five_prime_UTR
TGGTCTAGTACATCCAAAGA+AGG 0.525051 7_4:-52439132 Msa1162050:five_prime_UTR
ACCAAGTAGCTGGTGCTGAA+TGG 0.525470 7_4:-52438081 Msa1162050:CDS
GTTGGTGTGTTTAACTGCCA+AGG 0.525917 7_4:-52438202 Msa1162050:CDS
ATCCGGCAAGAGATAGGACC+AGG 0.526010 7_4:-52438362 Msa1162050:intron
AACAAATGTACTGGAGTTGT+TGG 0.527809 7_4:-52438220 Msa1162050:CDS
GCATATCCAGTGCAGTCGCC+GGG 0.528579 7_4:-52439209 Msa1162050:five_prime_UTR
CATGCTTACTTAGCTTCATG+TGG 0.529132 7_4:-52439086 Msa1162050:five_prime_UTR
TTGTGGAAAGGATATACCTC+TGG 0.530688 7_4:-52441148 Msa1162050:five_prime_UTR
AGTACTCCCGGCGACTGCAC+TGG 0.532071 7_4:+52439203 None:intergenic
TGGTATTTATTGAAATGTGT+AGG 0.533655 7_4:-52437360 Msa1162050:three_prime_UTR
CCATTCCGATCTGTTCTACA+AGG 0.533937 7_4:-52441030 Msa1162050:five_prime_UTR
TCCTAAGAAGGTCAAAATTG+TGG 0.534153 7_4:+52438460 None:intergenic
TAGAGAGCAAAGATAGTGAA+GGG 0.534868 7_4:-52441107 Msa1162050:five_prime_UTR
GTCAGAAAAGTTACGAGCAA+TGG 0.534910 7_4:+52438956 None:intergenic
ATTCAACAGGAAATAGCGCC+TGG 0.535247 7_4:-52437739 Msa1162050:intron
TATGTATGGCATGCACTAGC+TGG 0.537814 7_4:-52439290 Msa1162050:five_prime_UTR
ACTTACTCTAGGATACCAAT+GGG 0.539184 7_4:+52441517 None:intergenic
AATATGTTATTTGTATGCCA+AGG 0.539497 7_4:-52437020 Msa1162050:three_prime_UTR
GTGTACCGGGAGATGTATCA+TGG 0.539582 7_4:+52438143 None:intergenic
GAAGAACCAACTTCCTAAGA+AGG 0.539968 7_4:+52438448 None:intergenic
ATGGACAGCTTGTCTGTACA+TGG 0.544086 7_4:-52439158 Msa1162050:five_prime_UTR
TTGCAAATTATGTCATGTGT+TGG 0.546197 7_4:-52437229 Msa1162050:three_prime_UTR
CTAAGCAGACTGCTGTTGTG+CGG 0.547653 7_4:-52438884 Msa1162050:CDS
ATTTGCAGCAATAGGCCTGA+TGG 0.548013 7_4:-52437710 Msa1162050:CDS
GGCCACCATGTCCAGCGCCA+AGG 0.548659 7_4:+52439021 None:intergenic
CCTTCTTGTACAACACAGTC+AGG 0.549051 7_4:+52439727 None:intergenic
AACAGAGCTAGTAAGTGTAC+CGG 0.549673 7_4:+52438129 None:intergenic
TGGTGGATGACACAGAGAAT+GGG 0.553636 7_4:-52441174 Msa1162050:five_prime_UTR
CATGCTGTTGAGACAAATCA+AGG 0.554075 7_4:-52440748 Msa1162050:five_prime_UTR
GAAACCCTTGGCGCTGGACA+TGG 0.554658 7_4:-52439026 Msa1162050:CDS
CAGACGAAATATGGATGGTG+TGG 0.555142 7_4:+52438826 None:intergenic
TAGCTCTTGTTTGTTGTCGG+AGG 0.555302 7_4:+52437639 None:intergenic
GGACTGATGTTCTTCTCCCA+TGG 0.559377 7_4:-52437201 Msa1162050:three_prime_UTR
GTCTGCCAAAATTTGTGGGG+TGG 0.562099 7_4:-52440875 Msa1162050:five_prime_UTR
AGCAAGACAGTGTAGACGAT+GGG 0.562425 7_4:+52441069 None:intergenic
AACAAGAAGTGCATTCCAGA+AGG 0.563349 7_4:+52442745 None:intergenic
CATTTATACATGTCCTCTTG+AGG 0.565403 7_4:+52437412 None:intergenic
GGAACATTACGACACTGCCT+TGG 0.566219 7_4:-52439231 Msa1162050:five_prime_UTR
CTTTGGAGAAAATATGTATG+AGG 0.566910 7_4:-52440822 Msa1162050:five_prime_UTR
CATTGCCTTGTAGAACAGAT+CGG 0.567534 7_4:+52441025 None:intergenic
CACATGAAGCTAAGTAAGCA+TGG 0.569172 7_4:+52439087 None:intergenic
CATGTTTGGTTGGTGCACAT+GGG 0.569269 7_4:-52439999 Msa1162050:five_prime_UTR
CCTTGCACCACCCAGCACCT+TGG 0.570082 7_4:+52438185 None:intergenic
CAGCTATCATCATGCACTTG+AGG 0.572105 7_4:-52438982 Msa1162050:CDS
CACAGGAGGAGCTGTAGAAG+AGG 0.573007 7_4:-52437677 Msa1162050:CDS
GCACGGAGAACAGAACCATC+AGG 0.573266 7_4:+52438426 None:intergenic
AATGGAAACTTGGTTGTCCA+CGG 0.573422 7_4:-52441661 Msa1162050:five_prime_UTR
ATCGAGATCTGCTTCGAGAG+TGG 0.579146 7_4:-52440991 Msa1162050:intron
ACAAGAGCTATTTGATGGTG+AGG 0.579627 7_4:-52437626 Msa1162050:CDS
GAAGCCAGCAGCGACTGGCA+TGG 0.580287 7_4:-52439252 Msa1162050:five_prime_UTR
ACACAGAGAATGGGAACTTG+TGG 0.585275 7_4:-52441165 Msa1162050:five_prime_UTR
TCCGTGCTCAATTACCTGGA+AGG 0.585493 7_4:-52438410 Msa1162050:CDS
CCAAGGTGCTGGGTGGTGCA+AGG 0.585557 7_4:-52438185 Msa1162050:CDS
CTACATCCCAGTTCCTCAAG+AGG 0.585688 7_4:-52437425 Msa1162050:CDS
TATACTGACGTAACAGCTGA+AGG 0.586199 7_4:-52439968 Msa1162050:five_prime_UTR
CATGCACTAGCTGGTTATTG+GGG 0.586529 7_4:-52439281 Msa1162050:five_prime_UTR
ATAGAGAGCAAAGATAGTGA+AGG 0.587130 7_4:-52441108 Msa1162050:five_prime_UTR
ATGTGGAGTAGATGGAGTGA+AGG 0.587223 7_4:-52439069 Msa1162050:five_prime_UTR
AACTTACTCTAGGATACCAA+TGG 0.587431 7_4:+52441516 None:intergenic
GCGCCGCCTTCTGTTTCACA+AGG 0.588281 7_4:-52442193 Msa1162050:five_prime_UTR
CAAGCTGTCCATGACAATGT+CGG 0.588661 7_4:+52439169 None:intergenic
AAACCAACCCGACATTGTCA+TGG 0.589230 7_4:-52439177 Msa1162050:five_prime_UTR
GGCGATTCGATTACCGAAAG+GGG 0.589332 7_4:-52437915 Msa1162050:CDS
ACCACCGATTGCGCGAGCTG+CGG 0.590946 7_4:+52438615 None:intergenic
ACTATTGCTTTGAAAGTGAG+AGG 0.591713 7_4:-52437553 Msa1162050:CDS
ACAGATTGAAACTAAAGCAA+AGG 0.591790 7_4:-52439752 Msa1162050:five_prime_UTR
CGTAACAGCTGAAGGTGTTG+AGG 0.592074 7_4:-52439960 Msa1162050:five_prime_UTR
ACAGAACATACTACATCCAT+GGG 0.593484 7_4:+52437185 None:intergenic
CTGGCTGCATAAACTCTCCA+AGG 0.593964 7_4:+52438784 None:intergenic
TGTATGTGTCATAACACTGA+TGG 0.596890 7_4:-52438918 Msa1162050:CDS
CACTTTCAAAGCAATAGTTG+CGG 0.598073 7_4:+52437558 None:intergenic
CCTGACTGTGTTGTACAAGA+AGG 0.599674 7_4:-52439727 Msa1162050:five_prime_UTR
AAGCAAGACAGTGTAGACGA+TGG 0.601592 7_4:+52441068 None:intergenic
CGACTGCACTGGATATGCCA+AGG 0.601724 7_4:+52439214 None:intergenic
GCCTTCCAGGTAATTGAGCA+CGG 0.603174 7_4:+52438409 None:intergenic
TTATGTCATGTGTTGGAGAG+AGG 0.603992 7_4:-52437222 Msa1162050:three_prime_UTR
ACAGCTGAAGGTGTTGAGGA+AGG 0.604487 7_4:-52439956 Msa1162050:five_prime_UTR
AGAGATTGGGAAAATTGGGT+TGG 0.605144 7_4:-52437287 Msa1162050:three_prime_UTR
GACAAATCAAGGCCTTCACA+TGG 0.607264 7_4:-52440737 Msa1162050:five_prime_UTR
ACAAGAAGTGCATTCCAGAA+GGG 0.612664 7_4:+52442746 None:intergenic
ACATGTCCTCTTGAGGAACT+GGG 0.612797 7_4:+52437419 None:intergenic
AGACGAAATATGGATGGTGT+GGG 0.612912 7_4:+52438827 None:intergenic
CCAGCGTCCGCTGAAGTGTG+CGG 0.613170 7_4:-52437503 Msa1162050:CDS
ATGTAACTGCAGTCTATCAG+AGG 0.613259 7_4:-52439818 Msa1162050:intron
GCACTAGCTGGTTATTGGGG+CGG 0.613817 7_4:-52439278 Msa1162050:five_prime_UTR
ATTGCTGCAAATGATATACC+AGG 0.615317 7_4:+52437721 None:intergenic
TGTCCATGACAATGTCGGGT+TGG 0.616272 7_4:+52439174 None:intergenic
GGTCTTAAACATCTAGTAGA+CGG 0.618889 7_4:-52439465 Msa1162050:five_prime_UTR
GTGTGGGAAGCAGGATCACG+CGG 0.620134 7_4:+52438843 None:intergenic
GAGAATGGGAACTTGTGGAA+AGG 0.621348 7_4:-52441160 Msa1162050:five_prime_UTR
CCGGTCTGCCAAAATTTGTG+GGG 0.621944 7_4:-52440878 Msa1162050:five_prime_UTR
CGGTTCCTTATCATAGATGA+CGG 0.623972 7_4:-52439781 Msa1162050:five_prime_UTR
AGAGAGCAAAGATAGTGAAG+GGG 0.624763 7_4:-52441106 Msa1162050:five_prime_UTR
CCATCTACCGCACACTTCAG+CGG 0.625492 7_4:+52437496 None:intergenic
CCTTGTAGAACAGATCGGAA+TGG 0.630384 7_4:+52441030 None:intergenic
AGCTGCGAGTAAGTGAGACT+CGG 0.633741 7_4:+52439000 None:intergenic
TGTAACTGCAGTCTATCAGA+GGG 0.634473 7_4:-52439817 Msa1162050:intron
GGTTTGCTACTATGTTGACA+GGG 0.639787 7_4:-52439548 Msa1162050:five_prime_UTR
CACGGCAAGACCATACTGAA+AGG 0.640207 7_4:-52441643 Msa1162050:five_prime_UTR
AACACAGTGATTAAGTGCTG+AGG 0.640837 7_4:-52441718 Msa1162050:intron
CTTTCAGTATGGTCTTGCCG+TGG 0.640875 7_4:+52441644 None:intergenic
TGGAGAAAATATGTATGAGG+TGG 0.641358 7_4:-52440819 Msa1162050:five_prime_UTR
GTGTTGAGGAAGGCCTGAAG+AGG 0.642831 7_4:-52439946 Msa1162050:intron
ACAAAGAGTGAGTCGCGCGT+AGG 0.646366 7_4:+52438387 None:intergenic
TTATACCCTTGTGAAACAGA+AGG 0.646776 7_4:+52442187 None:intergenic
CATGCATGTAAACCATGTGA+AGG 0.648775 7_4:+52440725 None:intergenic
GTAGCTGGTGCTGAATGGCA+TGG 0.653985 7_4:-52438076 Msa1162050:CDS
CGCCGCCTTCTGTTTCACAA+GGG 0.654302 7_4:-52442192 Msa1162050:intron
GCTTCCGGTTCAAGTTATGG+TGG 0.656444 7_4:-52441191 Msa1162050:five_prime_UTR
TCTTTGGATGTACTAGACCA+AGG 0.658245 7_4:+52439135 None:intergenic
ACAGAGCTAGTAAGTGTACC+GGG 0.660441 7_4:+52438130 None:intergenic
ATGGACATGTTCAACACAGG+AGG 0.660528 7_4:-52437691 Msa1162050:CDS
ACACTTCAGCGGACGCTGGG+AGG 0.665564 7_4:+52437507 None:intergenic
ACCCTTGGCGCTGGACATGG+TGG 0.666705 7_4:-52439023 Msa1162050:CDS
GTTGATGAGATCAACATCAG+AGG 0.675809 7_4:+52438102 None:intergenic
CTGATGGACATGTTCAACAC+AGG 0.676150 7_4:-52437694 Msa1162050:CDS
AGATGTTTAAGACCTGATGT+CGG 0.681015 7_4:+52439474 None:intergenic
TGCAACAGACGAAATATGGA+TGG 0.685520 7_4:+52438821 None:intergenic
TACCCTTGTGAAACAGAAGG+CGG 0.689248 7_4:+52442190 None:intergenic
TTAACTGCCAAGGTGCTGGG+TGG 0.696652 7_4:-52438192 Msa1162050:CDS
AGCATGAATTGAGTCTCCAG+AGG 0.706669 7_4:+52441132 None:intergenic
AACTGCAGTCTATCAGAGGG+AGG 0.707342 7_4:-52439814 Msa1162050:intron
TGTGGGAAGCAGGATCACGC+GGG 0.712964 7_4:+52438844 None:intergenic
TCATCTATGATAAGGAACCG+CGG 0.749631 7_4:+52439784 None:intergenic
TCTATGATAAGGAACCGCGG+AGG 0.806296 7_4:+52439787 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTTTTTAAATAAAATT+TGG - chr7_4:52437200-52437219 Msa1162050:three_prime_UTR 0.0%
!!! GATTTTATAAATTACTTTTA+TGG - chr7_4:52437136-52437155 Msa1162050:three_prime_UTR 10.0%
!! AATATAAAAAAATATGCATA+TGG + chr7_4:52437683-52437702 None:intergenic 10.0%
!!! TAATTTTTTTTATTTTGTGA+CGG + chr7_4:52437827-52437846 None:intergenic 10.0%
!! TAATTATTCAAATTCTTAAT+TGG - chr7_4:52440434-52440453 Msa1162050:intron 10.0%
!!! GTTTTCTTTGAATTATTAAT+TGG - chr7_4:52437048-52437067 Msa1162050:three_prime_UTR 15.0%
!!! TTTTTTTCTTCTGATAAAAT+TGG - chr7_4:52437637-52437656 Msa1162050:CDS 15.0%
!!! GTAAATTTTATGCTTAATAA+TGG + chr7_4:52437769-52437788 None:intergenic 15.0%
!! TAATACTACTAACTAAATTT+GGG + chr7_4:52437888-52437907 None:intergenic 15.0%
!! TTAATACTACTAACTAAATT+TGG + chr7_4:52437889-52437908 None:intergenic 15.0%
!!! TTTGATATTTTGATAAATCA+CGG - chr7_4:52438355-52438374 Msa1162050:intron 15.0%
!! TAAATTGTATTTATTATTGC+AGG - chr7_4:52440204-52440223 Msa1162050:intron 15.0%
!! AAATTTGGAGATGATAATTA+TGG - chr7_4:52437215-52437234 Msa1162050:three_prime_UTR 20.0%
!! ATTTGATGTGATACAAAATT+TGG - chr7_4:52437908-52437927 Msa1162050:CDS 20.0%
!! AATAAGCTAAAAATCGTTTA+TGG + chr7_4:52439208-52439227 None:intergenic 20.0%
!! TTAATAGATCAAACAGAAAA+AGG + chr7_4:52439582-52439601 None:intergenic 20.0%
!!! TTTTTCTGTTTGATCTATTA+AGG - chr7_4:52439581-52439600 Msa1162050:intron 20.0%
!!! TTTTCTGTTTGATCTATTAA+GGG - chr7_4:52439582-52439601 Msa1162050:intron 20.0%
!! AAATTTCAAAAGAGTAAGAA+TGG - chr7_4:52440263-52440282 Msa1162050:intron 20.0%
!! TTGAATAAAAAAGCAAGTTA+AGG + chr7_4:52440372-52440391 None:intergenic 20.0%
!!! AACCTGTTTTTTATACATAT+TGG - chr7_4:52441222-52441241 Msa1162050:intron 20.0%
!! TTCCAATATGTATAAAAAAC+AGG + chr7_4:52441227-52441246 None:intergenic 20.0%
!!! GTTTTTTATACATATTGGAA+TGG - chr7_4:52441227-52441246 Msa1162050:intron 20.0%
!! CACTATAAAATCATCATAAA+AGG + chr7_4:52441280-52441299 None:intergenic 20.0%
!! TAGAAAAATAAGATTGTTGA+GGG - chr7_4:52442793-52442812 Msa1162050:five_prime_UTR 20.0%
!!! ATTGTTTGAAATGTTGAAAA+AGG - chr7_4:52442816-52442835 Msa1162050:five_prime_UTR 20.0%
! GAAAGTTGAGAAATGTAAAT+TGG + chr7_4:52437075-52437094 None:intergenic 25.0%
!!! TTACTTTTATGGATTCTAAG+AGG - chr7_4:52437147-52437166 Msa1162050:three_prime_UTR 25.0%
! TCTAATACTCAATCTCTTAT+TGG - chr7_4:52437364-52437383 Msa1162050:three_prime_UTR 25.0%
!!! CTTATTGGTTTAAATCATTG+TGG - chr7_4:52437379-52437398 Msa1162050:exon 25.0%
!!! GTGTTTTTTCCTTTTAAAGT+CGG - chr7_4:52437517-52437536 Msa1162050:CDS 25.0%
!! AAAAGAAAACCGACTTTAAA+AGG + chr7_4:52437529-52437548 None:intergenic 25.0%
!! TTTTCTTTTATCTTCAGTGA+CGG - chr7_4:52437540-52437559 Msa1162050:CDS 25.0%
! AATTGGGAAAACTTAATTGT+TGG - chr7_4:52437607-52437626 Msa1162050:CDS 25.0%
!! TGGCTTTTATGATTTTTGTA+TGG + chr7_4:52437749-52437768 None:intergenic 25.0%
!!! CTTATCAAGGTTTTAAATCA+CGG - chr7_4:52438296-52438315 Msa1162050:intron 25.0%
! AAGAGATTATGAAAAAAACG+TGG - chr7_4:52439175-52439194 Msa1162050:five_prime_UTR 25.0%
! AGAGATTATGAAAAAAACGT+GGG - chr7_4:52439176-52439195 Msa1162050:five_prime_UTR 25.0%
! ACACTTATATGATAAGTGTT+TGG - chr7_4:52439310-52439329 Msa1162050:intron 25.0%
! CACTTATATGATAAGTGTTT+GGG - chr7_4:52439311-52439330 Msa1162050:intron 25.0%
! GTTGGAATATATTCTTCATT+TGG - chr7_4:52439512-52439531 Msa1162050:five_prime_UTR 25.0%
! TATGCATAATGATTACCTTA+TGG - chr7_4:52439693-52439712 Msa1162050:intron 25.0%
! AAAAAGCAAGTTAAGGAAAT+AGG + chr7_4:52440365-52440384 None:intergenic 25.0%
!! TTAATTGGTTACTTTGTTGA+TGG - chr7_4:52440449-52440468 Msa1162050:intron 25.0%
! TGAATTTGGTATAACTTACA+TGG + chr7_4:52441028-52441047 None:intergenic 25.0%
! ATTATAATTGGAGGTGAATT+TGG + chr7_4:52441042-52441061 None:intergenic 25.0%
! CATTGACAAATTATAATTGG+AGG + chr7_4:52441051-52441070 None:intergenic 25.0%
!!! AGGCATTGACAAATTATAAT+TGG + chr7_4:52441054-52441073 None:intergenic 25.0%
! AAATTAACATCTGAAAAAGC+AGG + chr7_4:52441074-52441093 None:intergenic 25.0%
!!! TTTTCAGCTTGCTAAAAATA+TGG - chr7_4:52441524-52441543 Msa1162050:five_prime_UTR 25.0%
!!! GATGTAATGTTTTATTCAAC+AGG - chr7_4:52442021-52442040 Msa1162050:intron 25.0%
! TTCTGAGTTATAGTCAAAAT+CGG + chr7_4:52442311-52442330 None:intergenic 25.0%
! TTTGACTATAACTCAGAAAA+TGG - chr7_4:52442313-52442332 Msa1162050:intron 25.0%
! TTGACTATAACTCAGAAAAT+GGG - chr7_4:52442314-52442333 Msa1162050:intron 25.0%
! GATTAAGTCATAAAAACACT+TGG - chr7_4:52442393-52442412 Msa1162050:intron 25.0%
! TGGTATTTATTGAAATGTGT+AGG - chr7_4:52442413-52442432 Msa1162050:intron 25.0%
! GGTATTTATTGAAATGTGTA+GGG - chr7_4:52442414-52442433 Msa1162050:intron 25.0%
!!! TTTTAACTTGTAACGTATGT+AGG - chr7_4:52442515-52442534 Msa1162050:intron 25.0%
!! TGTTTGAAATATGTTGAGAT+TGG - chr7_4:52442713-52442732 Msa1162050:five_prime_UTR 25.0%
!! AATATGTTATTTGTATGCCA+AGG - chr7_4:52442753-52442772 Msa1162050:five_prime_UTR 25.0%
!!! TTTTTCTACTTGCTAATTAC+AGG + chr7_4:52442781-52442800 None:intergenic 25.0%
! GTAGAAAAATAAGATTGTTG+AGG - chr7_4:52442792-52442811 Msa1162050:five_prime_UTR 25.0%
TATCTAAGCTACAAACGTTA+CGG - chr7_4:52437095-52437114 Msa1162050:three_prime_UTR 30.0%
! TTTTGTTCGATTGAGTTTGT+AGG - chr7_4:52437249-52437268 Msa1162050:three_prime_UTR 30.0%
! GATGAACTTGTCTTTCATTT+TGG - chr7_4:52437281-52437300 Msa1162050:three_prime_UTR 30.0%
! TTTCATTTTGGACATGCTTT+GGG - chr7_4:52437293-52437312 Msa1162050:three_prime_UTR 30.0%
AAAATTGAACCCCAACAAAA+TGG - chr7_4:52437414-52437433 Msa1162050:CDS 30.0%
TCTAGCACTCACTTATTTAT+TGG + chr7_4:52437461-52437480 None:intergenic 30.0%
! TGTTTCACAAGGGTATAATT+GGG - chr7_4:52437591-52437610 Msa1162050:CDS 30.0%
!!! TTTTTTATTTTGTGACGGAG+AGG + chr7_4:52437822-52437841 None:intergenic 30.0%
! AACAATAAGGAGCATAAGAT+TGG + chr7_4:52438026-52438045 None:intergenic 30.0%
TGTTACCATAGCAAACAATA+AGG + chr7_4:52438039-52438058 None:intergenic 30.0%
TCTAATATCTCCGTTGAAAA+TGG - chr7_4:52438094-52438113 Msa1162050:CDS 30.0%
! AACCAAGTTTCCATTTTCAA+CGG + chr7_4:52438107-52438126 None:intergenic 30.0%
CGTGATTAACTAGAATATCA+CGG + chr7_4:52438393-52438412 None:intergenic 30.0%
! CGTGATATTCTAGTTAATCA+CGG - chr7_4:52438391-52438410 Msa1162050:CDS 30.0%
GTTTCAATAAAAGCAGAACA+TGG + chr7_4:52438505-52438524 None:intergenic 30.0%
ACTCTTTATCATGCGAAAAA+CGG - chr7_4:52438811-52438830 Msa1162050:CDS 30.0%
! CTTTGGAGAAAATATGTATG+AGG - chr7_4:52438951-52438970 Msa1162050:CDS 30.0%
ATACCAAAAGGAGTTTGATT+GGG + chr7_4:52438983-52439002 None:intergenic 30.0%
AAACCAAATCACATACCAAA+AGG + chr7_4:52438995-52439014 None:intergenic 30.0%
! ACATTTTTCCCATTAGTGTA+GGG - chr7_4:52439116-52439135 Msa1162050:five_prime_UTR 30.0%
TAAGCATTTGTGAGATTGTT+TGG - chr7_4:52439152-52439171 Msa1162050:five_prime_UTR 30.0%
ACAAGGTTAAAAGATCCATA+AGG + chr7_4:52439711-52439730 None:intergenic 30.0%
ACAGATTGAAACTAAAGCAA+AGG - chr7_4:52440021-52440040 Msa1162050:intron 30.0%
AAACATCACAATGTCAAGTA+TGG - chr7_4:52440338-52440357 Msa1162050:intron 30.0%
TGGACAGAAATGTTTATGTA+TGG - chr7_4:52440469-52440488 Msa1162050:intron 30.0%
TAGAAGTTGAAAACCTTCTT+TGG + chr7_4:52440657-52440676 None:intergenic 30.0%
CAAAACATTATTGAAACCCT+TGG - chr7_4:52440735-52440754 Msa1162050:five_prime_UTR 30.0%
! TGATTTTATAGTGATAAGCC+AGG - chr7_4:52441287-52441306 Msa1162050:intron 30.0%
AGAGTTAAGTAAAACAAACC+TGG + chr7_4:52441432-52441451 None:intergenic 30.0%
ATTGTTTATGCTTACAGATC+AGG - chr7_4:52441727-52441746 Msa1162050:intron 30.0%
! AAATCCACCTTCATATTTTC+AGG - chr7_4:52441832-52441851 Msa1162050:intron 30.0%
!! CTCTAGTTCTGTTATACTAA+CGG - chr7_4:52441999-52442018 Msa1162050:intron 30.0%
!! AAATAGCTCTTGTTTGTTGT+CGG + chr7_4:52442140-52442159 None:intergenic 30.0%
AACAAACAAGAGCTATTTGA+TGG - chr7_4:52442142-52442161 Msa1162050:intron 30.0%
! GTTATAGTCAAAATCGGTTT+CGG + chr7_4:52442305-52442324 None:intergenic 30.0%
! GGTAATAACTACTACACTTT+TGG - chr7_4:52442450-52442469 Msa1162050:intron 30.0%
TTGCAAATTATGTCATGTGT+TGG - chr7_4:52442544-52442563 Msa1162050:intron 30.0%
! ACCAGAACATAAGATTTTTG+AGG - chr7_4:52442687-52442706 Msa1162050:five_prime_UTR 30.0%
! CCAGAACATAAGATTTTTGA+GGG - chr7_4:52442688-52442707 Msa1162050:five_prime_UTR 30.0%
TACAAACGTTACGGTAAGTT+CGG - chr7_4:52437104-52437123 Msa1162050:three_prime_UTR 35.0%
! CTTTCATTTTGGACATGCTT+TGG - chr7_4:52437292-52437311 Msa1162050:three_prime_UTR 35.0%
! TATGTTCCACCATTTTGTTG+GGG + chr7_4:52437426-52437445 None:intergenic 35.0%
! GTATGTTCCACCATTTTGTT+GGG + chr7_4:52437427-52437446 None:intergenic 35.0%
! TGTATGTTCCACCATTTTGT+TGG + chr7_4:52437428-52437447 None:intergenic 35.0%
TTATACCCTTGTGAAACAGA+AGG + chr7_4:52437589-52437608 None:intergenic 35.0%
! CTGTTTCACAAGGGTATAAT+TGG - chr7_4:52437590-52437609 Msa1162050:CDS 35.0%
!!! TGGGTGTTGATTTTTTGTGA+GGG + chr7_4:52437869-52437888 None:intergenic 35.0%
!!! TTGGGTGTTGATTTTTTGTG+AGG + chr7_4:52437870-52437889 None:intergenic 35.0%
!! GGTGTTATGTAACGTTCTTT+TGG - chr7_4:52437929-52437948 Msa1162050:intron 35.0%
! ATAAGGAGCATAAGATTGGT+TGG + chr7_4:52438022-52438041 None:intergenic 35.0%
! ATGCTCCTTATTGTTTGCTA+TGG - chr7_4:52438031-52438050 Msa1162050:intron 35.0%
!! ACTTACTCTAGGATACCAAT+GGG + chr7_4:52438259-52438278 None:intergenic 35.0%
!! AACTTACTCTAGGATACCAA+TGG + chr7_4:52438260-52438279 None:intergenic 35.0%
AAGCTAGAAGAACTTACTCT+AGG + chr7_4:52438270-52438289 None:intergenic 35.0%
! CTAGCTTTCTACACTTATCA+AGG - chr7_4:52438283-52438302 Msa1162050:intron 35.0%
! ATTCTAGTTAATCACGGTTG+CGG - chr7_4:52438397-52438416 Msa1162050:CDS 35.0%
GAACATGGTCAGCAAAAAAA+AGG + chr7_4:52438490-52438509 None:intergenic 35.0%
! AACACGTGAACTTTATTTGC+AGG - chr7_4:52438540-52438559 Msa1162050:intron 35.0%
! ACACGTGAACTTTATTTGCA+GGG - chr7_4:52438541-52438560 Msa1162050:intron 35.0%
ATAGAGAGCAAAGATAGTGA+AGG - chr7_4:52438665-52438684 Msa1162050:intron 35.0%
TAGAGAGCAAAGATAGTGAA+GGG - chr7_4:52438666-52438685 Msa1162050:intron 35.0%
CTGTTAAATTCAGTTCCTTC+CGG - chr7_4:52438876-52438895 Msa1162050:CDS 35.0%
GCAAATGGAGTTTATAGCTT+TGG - chr7_4:52438934-52438953 Msa1162050:CDS 35.0%
TGGAGAAAATATGTATGAGG+TGG - chr7_4:52438954-52438973 Msa1162050:CDS 35.0%
! TATCCCAATCAAACTCCTTT+TGG - chr7_4:52438977-52438996 Msa1162050:CDS 35.0%
CATACCAAAAGGAGTTTGAT+TGG + chr7_4:52438984-52439003 None:intergenic 35.0%
! ACTCCTTTTGGTATGTGATT+TGG - chr7_4:52438989-52439008 Msa1162050:CDS 35.0%
!! GTTGATGACTTCAAAAGGAT+TGG + chr7_4:52439080-52439099 None:intergenic 35.0%
GGGAAAAATGTCTTACTTGA+CGG + chr7_4:52439107-52439126 None:intergenic 35.0%
! GACATTTTTCCCATTAGTGT+AGG - chr7_4:52439115-52439134 Msa1162050:five_prime_UTR 35.0%
CTTATTTCCATAAGCTCTTC+AGG - chr7_4:52439222-52439241 Msa1162050:five_prime_UTR 35.0%
AAACTATCCTGAAGAGCTTA+TGG + chr7_4:52439232-52439251 None:intergenic 35.0%
AAGCTCTTCAGGATAGTTTA+TGG - chr7_4:52439233-52439252 Msa1162050:five_prime_UTR 35.0%
AAGTCAGTTAAACGATCACA+GGG + chr7_4:52439457-52439476 None:intergenic 35.0%
TAAGTCAGTTAAACGATCAC+AGG + chr7_4:52439458-52439477 None:intergenic 35.0%
CAACTACTACAATGCAAACA+AGG + chr7_4:52439496-52439515 None:intergenic 35.0%
CTTGTTTGCATTGTAGTAGT+TGG - chr7_4:52439494-52439513 Msa1162050:five_prime_UTR 35.0%
CATTCATCCGTAATACTACA+AGG + chr7_4:52439668-52439687 None:intergenic 35.0%
! ATCTTTTAACCTTGTTCTGC+TGG - chr7_4:52439716-52439735 Msa1162050:intron 35.0%
CATATAAAACCAGCAGAACA+AGG + chr7_4:52439728-52439747 None:intergenic 35.0%
CCAAACATGTCAAGAAAAGA+TGG + chr7_4:52439763-52439782 None:intergenic 35.0%
! CCATCTTTTCTTGACATGTT+TGG - chr7_4:52439760-52439779 Msa1162050:five_prime_UTR 35.0%
! CTTTTCTTGACATGTTTGGT+TGG - chr7_4:52439764-52439783 Msa1162050:five_prime_UTR 35.0%
CTCTCAATAATTACCTCTTC+AGG + chr7_4:52439843-52439862 None:intergenic 35.0%
TACTATGTTGACAGGGATTA+AGG - chr7_4:52440232-52440251 Msa1162050:intron 35.0%
! AGATGTTTAAGACCTGATGT+CGG + chr7_4:52440302-52440321 None:intergenic 35.0%
GGTCTTAAACATCTAGTAGA+CGG - chr7_4:52440308-52440327 Msa1162050:intron 35.0%
TGTATGTGTCATAACACTGA+TGG - chr7_4:52440855-52440874 Msa1162050:five_prime_UTR 35.0%
TGTATGCAACAGACGAAATA+TGG + chr7_4:52440959-52440978 None:intergenic 35.0%
!! GCATACAATTCACTTTTCCT+TGG - chr7_4:52440972-52440991 Msa1162050:intron 35.0%
TAGCTGTACCTGACATAAAT+TGG + chr7_4:52441187-52441206 None:intergenic 35.0%
!! ACCACAATTTTGACCTTCTT+AGG - chr7_4:52441312-52441331 Msa1162050:intron 35.0%
TCCTAAGAAGGTCAAAATTG+TGG + chr7_4:52441316-52441335 None:intergenic 35.0%
! TTTTGACCTTCTTAGGAAGT+TGG - chr7_4:52441319-52441338 Msa1162050:intron 35.0%
CTGAGAAACATAGACTCAAA+AGG + chr7_4:52441466-52441485 None:intergenic 35.0%
TGGAACATGAACAAATGTAC+TGG - chr7_4:52441544-52441563 Msa1162050:five_prime_UTR 35.0%
AACAAATGTACTGGAGTTGT+TGG - chr7_4:52441553-52441572 Msa1162050:five_prime_UTR 35.0%
TTCGATTCCAGTAACACTAA+AGG - chr7_4:52441882-52441901 Msa1162050:intron 35.0%
! TTACTTGGATTGGACAGAAA+TGG + chr7_4:52441927-52441946 None:intergenic 35.0%
CAGTGACATACAACATAAAC+TGG + chr7_4:52441960-52441979 None:intergenic 35.0%
CAGTTTATGTTGTATGTCAC+TGG - chr7_4:52441958-52441977 Msa1162050:intron 35.0%
CGTTAGTATAACAGAACTAG+AGG + chr7_4:52442001-52442020 None:intergenic 35.0%
ATTGCTGCAAATGATATACC+AGG + chr7_4:52442055-52442074 None:intergenic 35.0%
GGTATATCATTTGCAGCAAT+AGG - chr7_4:52442055-52442074 Msa1162050:intron 35.0%
!! ATTTGATGGTGAGGTTGTTT+CGG - chr7_4:52442156-52442175 Msa1162050:intron 35.0%
CACTTTCAAAGCAATAGTTG+CGG + chr7_4:52442218-52442237 None:intergenic 35.0%
!! ACTATTGCTTTGAAAGTGAG+AGG - chr7_4:52442220-52442239 Msa1162050:five_prime_UTR 35.0%
CATTTATACATGTCCTCTTG+AGG + chr7_4:52442364-52442383 None:intergenic 35.0%
CTCAAGAGGACATGTATAAA+TGG - chr7_4:52442362-52442381 Msa1162050:intron 35.0%
ACAGAACATACTACATCCAT+GGG + chr7_4:52442591-52442610 None:intergenic 35.0%
AACAGAACATACTACATCCA+TGG + chr7_4:52442592-52442611 None:intergenic 35.0%
CCCTCAAAAATCTTATGTTC+TGG + chr7_4:52442691-52442710 None:intergenic 35.0%
! TTCGTGCTTGTGTGTTTTGT+AGG - chr7_4:52436995-52437014 Msa1162050:three_prime_UTR 40.0%
! ACAAGAAGTGCATTCCAGAA+GGG + chr7_4:52437030-52437049 None:intergenic 40.0%
! AACAAGAAGTGCATTCCAGA+AGG + chr7_4:52437031-52437050 None:intergenic 40.0%
!! TGTTCAAAAGAGAGTGTTGC+TGG + chr7_4:52437339-52437358 None:intergenic 40.0%
ATTGAACCCCAACAAAATGG+TGG - chr7_4:52437417-52437436 Msa1162050:CDS 40.0%
!! ATTTTGTGACGGAGAGGTAT+TGG + chr7_4:52437816-52437835 None:intergenic 40.0%
! AACACAGTGATTAAGTGCTG+AGG - chr7_4:52438055-52438074 Msa1162050:CDS 40.0%
CTCCGTTGAAAATGGAAACT+TGG - chr7_4:52438102-52438121 Msa1162050:CDS 40.0%
AATGGAAACTTGGTTGTCCA+CGG - chr7_4:52438112-52438131 Msa1162050:CDS 40.0%
! GAGTGAGCACAACATTTTCT+GGG + chr7_4:52438159-52438178 None:intergenic 40.0%
! CACGTGAACTTTATTTGCAG+GGG - chr7_4:52438542-52438561 Msa1162050:intron 40.0%
! ACGTGAACTTTATTTGCAGG+GGG - chr7_4:52438543-52438562 Msa1162050:intron 40.0%
TCATCCACCATAACTTGAAC+CGG + chr7_4:52438589-52438608 None:intergenic 40.0%
TTGTGGAAAGGATATACCTC+TGG - chr7_4:52438625-52438644 Msa1162050:CDS 40.0%
AGAGAGCAAAGATAGTGAAG+GGG - chr7_4:52438667-52438686 Msa1162050:intron 40.0%
CATTGCCTTGTAGAACAGAT+CGG + chr7_4:52438751-52438770 None:intergenic 40.0%
TGCGAAAAACGGTTTAGTGT+AGG - chr7_4:52438822-52438841 Msa1162050:CDS 40.0%
GGAGCTGTCATTAATGCAAA+TGG - chr7_4:52438919-52438938 Msa1162050:CDS 40.0%
!!! GGTATGTGATTTGGTTTTGC+AGG - chr7_4:52438998-52439017 Msa1162050:CDS 40.0%
CATGCTGTTGAGACAAATCA+AGG - chr7_4:52439025-52439044 Msa1162050:CDS 40.0%
CATGCATGTAAACCATGTGA+AGG + chr7_4:52439051-52439070 None:intergenic 40.0%
!! GCTTGGTTGATGACTTCAAA+AGG + chr7_4:52439085-52439104 None:intergenic 40.0%
AAATGTCTTACTTGACGGCT+TGG + chr7_4:52439102-52439121 None:intergenic 40.0%
CCTAACAACCCTACACTAAT+GGG + chr7_4:52439127-52439146 None:intergenic 40.0%
TCCTAACAACCCTACACTAA+TGG + chr7_4:52439128-52439147 None:intergenic 40.0%
TCCATCAAGTGTTTCATGCT+AGG - chr7_4:52439364-52439383 Msa1162050:intron 40.0%
AGTACAAGACAGGCTATGTT+TGG + chr7_4:52439421-52439440 None:intergenic 40.0%
ACTACAATGCAAACAAGGTC+AGG + chr7_4:52439491-52439510 None:intergenic 40.0%
GTTTGATCTATTAAGGGCTG+TGG - chr7_4:52439588-52439607 Msa1162050:intron 40.0%
CCGTAATACTACAAGGAAGA+GGG + chr7_4:52439661-52439680 None:intergenic 40.0%
CCCTCTTCCTTGTAGTATTA+CGG - chr7_4:52439658-52439677 Msa1162050:intron 40.0%
TCCGTAATACTACAAGGAAG+AGG + chr7_4:52439662-52439681 None:intergenic 40.0%
TATACTGACGTAACAGCTGA+AGG - chr7_4:52439805-52439824 Msa1162050:five_prime_UTR 40.0%
ATGTAACTGCAGTCTATCAG+AGG - chr7_4:52439955-52439974 Msa1162050:five_prime_UTR 40.0%
TGTAACTGCAGTCTATCAGA+GGG - chr7_4:52439956-52439975 Msa1162050:five_prime_UTR 40.0%
TCATCTATGATAAGGAACCG+CGG + chr7_4:52439992-52440011 None:intergenic 40.0%
CGGTTCCTTATCATAGATGA+CGG - chr7_4:52439992-52440011 Msa1162050:five_prime_UTR 40.0%
!! AGGTTTGCTACTATGTTGAC+AGG - chr7_4:52440224-52440243 Msa1162050:intron 40.0%
!! GGTTTGCTACTATGTTGACA+GGG - chr7_4:52440225-52440244 Msa1162050:intron 40.0%
TCTTTGGATGTACTAGACCA+AGG + chr7_4:52440641-52440660 None:intergenic 40.0%
TGGTCTAGTACATCCAAAGA+AGG - chr7_4:52440641-52440660 Msa1162050:intron 40.0%
CACATGAAGCTAAGTAAGCA+TGG + chr7_4:52440689-52440708 None:intergenic 40.0%
CATGCTTACTTAGCTTCATG+TGG - chr7_4:52440687-52440706 Msa1162050:five_prime_UTR 40.0%
TTAGCTTCATGTGGAGTAGA+TGG - chr7_4:52440696-52440715 Msa1162050:five_prime_UTR 40.0%
GTCAGAAAAGTTACGAGCAA+TGG + chr7_4:52440820-52440839 None:intergenic 40.0%
! GCTCGTAACTTTTCTGACAA+TGG - chr7_4:52440822-52440841 Msa1162050:five_prime_UTR 40.0%
AGACGAAATATGGATGGTGT+GGG + chr7_4:52440949-52440968 None:intergenic 40.0%
TGCAACAGACGAAATATGGA+TGG + chr7_4:52440955-52440974 None:intergenic 40.0%
AGAGTTTATGCAGCCAGATT+GGG - chr7_4:52440995-52441014 Msa1162050:five_prime_UTR 40.0%
GTGGTTGTCCAATTTATGTC+AGG - chr7_4:52441176-52441195 Msa1162050:five_prime_UTR 40.0%
GAAGAACCAACTTCCTAAGA+AGG + chr7_4:52441328-52441347 None:intergenic 40.0%
AACAGAGCTAGTAAGTGTAC+CGG + chr7_4:52441647-52441666 None:intergenic 40.0%
! GTTGATGAGATCAACATCAG+AGG + chr7_4:52441674-52441693 None:intergenic 40.0%
TCCAGTAACACTAAAGGTTC+TGG - chr7_4:52441888-52441907 Msa1162050:intron 40.0%
TCCAGAACCTTTAGTGTTAC+TGG + chr7_4:52441892-52441911 None:intergenic 40.0%
!! ACAAGAGCTATTTGATGGTG+AGG - chr7_4:52442147-52442166 Msa1162050:intron 40.0%
TACCATGTAGCTGAGAGATT+GGG - chr7_4:52442473-52442492 Msa1162050:intron 40.0%
AGCTGAGAGATTGGGAAAAT+TGG - chr7_4:52442481-52442500 Msa1162050:intron 40.0%
GCTGAGAGATTGGGAAAATT+GGG - chr7_4:52442482-52442501 Msa1162050:intron 40.0%
AGAGATTGGGAAAATTGGGT+TGG - chr7_4:52442486-52442505 Msa1162050:intron 40.0%
TTATGTCATGTGTTGGAGAG+AGG - chr7_4:52442551-52442570 Msa1162050:intron 40.0%
CTTGCTAATTACAGGTTCCT+TGG + chr7_4:52442773-52442792 None:intergenic 40.0%
TACCCTTGTGAAACAGAAGG+CGG + chr7_4:52437586-52437605 None:intergenic 45.0%
!! TTCTGGGACACCTTTCAGTA+TGG + chr7_4:52438143-52438162 None:intergenic 45.0%
! GGAGTGAGCACAACATTTTC+TGG + chr7_4:52438160-52438179 None:intergenic 45.0%
CTCACTCCAGATTCTGGTAA+TGG - chr7_4:52438172-52438191 Msa1162050:CDS 45.0%
GCAAGACCATTACCAGAATC+TGG + chr7_4:52438181-52438200 None:intergenic 45.0%
!! TCTGGTAATGGTCTTGCTAC+TGG - chr7_4:52438184-52438203 Msa1162050:CDS 45.0%
CTTGCTACTGGTGCATTCAT+TGG - chr7_4:52438196-52438215 Msa1162050:CDS 45.0%
! AACGTGGAGGCTTTTGGTAT+GGG + chr7_4:52438233-52438252 None:intergenic 45.0%
! AAACGTGGAGGCTTTTGGTA+TGG + chr7_4:52438234-52438253 None:intergenic 45.0%
TACCAATGGGAAAAACGTGG+AGG + chr7_4:52438246-52438265 None:intergenic 45.0%
GGATACCAATGGGAAAAACG+TGG + chr7_4:52438249-52438268 None:intergenic 45.0%
! GTTGCTTCCGGTTCAAGTTA+TGG - chr7_4:52438579-52438598 Msa1162050:intron 45.0%
!! ATGGTGGATGACACAGAGAA+TGG - chr7_4:52438598-52438617 Msa1162050:CDS 45.0%
! TGGTGGATGACACAGAGAAT+GGG - chr7_4:52438599-52438618 Msa1162050:CDS 45.0%
ACACAGAGAATGGGAACTTG+TGG - chr7_4:52438608-52438627 Msa1162050:CDS 45.0%
GAGAATGGGAACTTGTGGAA+AGG - chr7_4:52438613-52438632 Msa1162050:CDS 45.0%
AGCATGAATTGAGTCTCCAG+AGG + chr7_4:52438644-52438663 None:intergenic 45.0%
AGCAAAGATAGTGAAGGGGA+AGG - chr7_4:52438671-52438690 Msa1162050:intron 45.0%
GCAAAGATAGTGAAGGGGAA+GGG - chr7_4:52438672-52438691 Msa1162050:intron 45.0%
CAAAGATAGTGAAGGGGAAG+GGG - chr7_4:52438673-52438692 Msa1162050:intron 45.0%
AGCAAGACAGTGTAGACGAT+GGG + chr7_4:52438707-52438726 None:intergenic 45.0%
AAGCAAGACAGTGTAGACGA+TGG + chr7_4:52438708-52438727 None:intergenic 45.0%
CACTGTCTTGCTTCCTCTAT+TGG - chr7_4:52438715-52438734 Msa1162050:intron 45.0%
GTCTTGCTTCCTCTATTGGA+AGG - chr7_4:52438719-52438738 Msa1162050:intron 45.0%
CCTTGTAGAACAGATCGGAA+TGG + chr7_4:52438746-52438765 None:intergenic 45.0%
CCATTCCGATCTGTTCTACA+AGG - chr7_4:52438743-52438762 Msa1162050:intron 45.0%
!! ACAAATTTTGGCAGACCGGA+AGG + chr7_4:52438894-52438913 None:intergenic 45.0%
TTCCGGTCTGCCAAAATTTG+TGG - chr7_4:52438893-52438912 Msa1162050:CDS 45.0%
TCCGGTCTGCCAAAATTTGT+GGG - chr7_4:52438894-52438913 Msa1162050:CDS 45.0%
GACAAATCAAGGCCTTCACA+TGG - chr7_4:52439036-52439055 Msa1162050:CDS 45.0%
CACATGGTTTACATGCATGC+TGG - chr7_4:52439052-52439071 Msa1162050:exon 45.0%
CCCATTAGTGTAGGGTTGTT+AGG - chr7_4:52439124-52439143 Msa1162050:five_prime_UTR 45.0%
GCCTAGCATGAAACACTTGA+TGG + chr7_4:52439368-52439387 None:intergenic 45.0%
ACAGTTCAACTACGCTCAAC+CGG + chr7_4:52439394-52439413 None:intergenic 45.0%
! CTAGGGGAAAAGTACAAGAC+AGG + chr7_4:52439431-52439450 None:intergenic 45.0%
AAACGATCACAGGGACACTA+GGG + chr7_4:52439448-52439467 None:intergenic 45.0%
TAAACGATCACAGGGACACT+AGG + chr7_4:52439449-52439468 None:intergenic 45.0%
! ACATGTTTGGTTGGTGCACA+TGG - chr7_4:52439773-52439792 Msa1162050:five_prime_UTR 45.0%
! CATGTTTGGTTGGTGCACAT+GGG - chr7_4:52439774-52439793 Msa1162050:five_prime_UTR 45.0%
! TCCTTATCATAGATGACGGC+TGG - chr7_4:52439996-52440015 Msa1162050:five_prime_UTR 45.0%
CCTTCTTGTACAACACAGTC+AGG + chr7_4:52440049-52440068 None:intergenic 45.0%
CCTGACTGTGTTGTACAAGA+AGG - chr7_4:52440046-52440065 Msa1162050:intron 45.0%
TATGTATGGCATGCACTAGC+TGG - chr7_4:52440483-52440502 Msa1162050:intron 45.0%
GCATGCACTAGCTGGTTATT+GGG - chr7_4:52440491-52440510 Msa1162050:intron 45.0%
CATGCACTAGCTGGTTATTG+GGG - chr7_4:52440492-52440511 Msa1162050:intron 45.0%
AAACCAACCCGACATTGTCA+TGG - chr7_4:52440596-52440615 Msa1162050:intron 45.0%
AAGCTGTCCATGACAATGTC+GGG + chr7_4:52440606-52440625 None:intergenic 45.0%
CAAGCTGTCCATGACAATGT+CGG + chr7_4:52440607-52440626 None:intergenic 45.0%
ATGGACAGCTTGTCTGTACA+TGG - chr7_4:52440615-52440634 Msa1162050:intron 45.0%
ATGTGGAGTAGATGGAGTGA+AGG - chr7_4:52440704-52440723 Msa1162050:five_prime_UTR 45.0%
ATTATTGAAACCCTTGGCGC+TGG - chr7_4:52440741-52440760 Msa1162050:five_prime_UTR 45.0%
CAGCTATCATCATGCACTTG+AGG - chr7_4:52440791-52440810 Msa1162050:five_prime_UTR 45.0%
ACGCGGGTAAAAATCATCAG+AGG + chr7_4:52440916-52440935 None:intergenic 45.0%
CAGACGAAATATGGATGGTG+TGG + chr7_4:52440950-52440969 None:intergenic 45.0%
GAGAGTTTATGCAGCCAGAT+TGG - chr7_4:52440994-52441013 Msa1162050:five_prime_UTR 45.0%
ACATGGAACATGTCCCAATC+TGG + chr7_4:52441011-52441030 None:intergenic 45.0%
GTGACTTCAGAGTCTACATC+CGG - chr7_4:52441120-52441139 Msa1162050:five_prime_UTR 45.0%
AGGTCAAAATTGTGGTTGCC+TGG + chr7_4:52441308-52441327 None:intergenic 45.0%
! AGGAAGTTGGTTCTTCCTGA+TGG - chr7_4:52441332-52441351 Msa1162050:intron 45.0%
CGACTCACTCTTTGTTGATC+CGG - chr7_4:52441394-52441413 Msa1162050:intron 45.0%
TTGTTGATCCGGCAAGAGAT+AGG - chr7_4:52441405-52441424 Msa1162050:intron 45.0%
GTTGGTGTGTTTAACTGCCA+AGG - chr7_4:52441571-52441590 Msa1162050:five_prime_UTR 45.0%
! TGTTTAACTGCCAAGGTGCT+GGG - chr7_4:52441578-52441597 Msa1162050:five_prime_UTR 45.0%
ACAGAGCTAGTAAGTGTACC+GGG + chr7_4:52441646-52441665 None:intergenic 45.0%
GATCTCATCAACCAAGTAGC+TGG - chr7_4:52441682-52441701 Msa1162050:five_prime_UTR 45.0%
CTCGCCTGAAAATATGAAGG+TGG + chr7_4:52441839-52441858 None:intergenic 45.0%
!! CACCTTCATATTTTCAGGCG+AGG - chr7_4:52441837-52441856 Msa1162050:intron 45.0%
AGGCGATTCGATTACCGAAA+GGG - chr7_4:52441857-52441876 Msa1162050:intron 45.0%
ATTCAACAGGAAATAGCGCC+TGG - chr7_4:52442034-52442053 Msa1162050:intron 45.0%
ATTTGCAGCAATAGGCCTGA+TGG - chr7_4:52442063-52442082 Msa1162050:intron 45.0%
CTGTGTTGAACATGTCCATC+AGG + chr7_4:52442081-52442100 None:intergenic 45.0%
! CTGATGGACATGTTCAACAC+AGG - chr7_4:52442079-52442098 Msa1162050:intron 45.0%
ATGGACATGTTCAACACAGG+AGG - chr7_4:52442082-52442101 Msa1162050:intron 45.0%
!! TAGCTCTTGTTTGTTGTCGG+AGG + chr7_4:52442137-52442156 None:intergenic 45.0%
CAATAGTTGCGGTTGTCGTT+CGG + chr7_4:52442207-52442226 None:intergenic 45.0%
!! GCTTTGAAAGTGAGAGGAAG+TGG - chr7_4:52442226-52442245 Msa1162050:five_prime_UTR 45.0%
TTGAGGAACTGGGATGTAGA+AGG + chr7_4:52442347-52442366 None:intergenic 45.0%
ACATGTCCTCTTGAGGAACT+GGG + chr7_4:52442357-52442376 None:intergenic 45.0%
TACATGTCCTCTTGAGGAAC+TGG + chr7_4:52442358-52442377 None:intergenic 45.0%
! GTGTAGGGAGAAGAGTTTTG+TGG - chr7_4:52442429-52442448 Msa1162050:intron 45.0%
GTACCATGTAGCTGAGAGAT+TGG - chr7_4:52442472-52442491 Msa1162050:intron 45.0%
TTCCCAATCTCTCAGCTACA+TGG + chr7_4:52442478-52442497 None:intergenic 45.0%
!! GTAGGAGAAGCATTCCCTTC+TGG - chr7_4:52437013-52437032 Msa1162050:three_prime_UTR 50.0%
GAAGGCGGCGCTTGAAATAA+GGG + chr7_4:52437571-52437590 None:intergenic 50.0%
AGAAGGCGGCGCTTGAAATA+AGG + chr7_4:52437572-52437591 None:intergenic 50.0%
! CTTTCAGTATGGTCTTGCCG+TGG + chr7_4:52438132-52438151 None:intergenic 50.0%
CACGGCAAGACCATACTGAA+AGG - chr7_4:52438130-52438149 Msa1162050:CDS 50.0%
GTTGTGCTCACTCCAGATTC+TGG - chr7_4:52438166-52438185 Msa1162050:CDS 50.0%
! GGGAAAAACGTGGAGGCTTT+TGG + chr7_4:52438239-52438258 None:intergenic 50.0%
! AGCCTCCACGTTTTTCCCAT+TGG - chr7_4:52438241-52438260 Msa1162050:CDS 50.0%
TAGTCTCGATCGCAGTCGTA+GGG - chr7_4:52438426-52438445 Msa1162050:CDS 50.0%
! ACTTTATTTGCAGGGGGCTC+CGG - chr7_4:52438549-52438568 Msa1162050:intron 50.0%
!! TCCGGTTCATGTGTTGCTTC+CGG - chr7_4:52438567-52438586 Msa1162050:intron 50.0%
ACCGGAAGCAACACATGAAC+CGG + chr7_4:52438571-52438590 None:intergenic 50.0%
! GCTTCCGGTTCAAGTTATGG+TGG - chr7_4:52438582-52438601 Msa1162050:intron 50.0%
CGGAATGGACCTTCCAATAG+AGG + chr7_4:52438731-52438750 None:intergenic 50.0%
ATCGAGATCTGCTTCGAGAG+TGG - chr7_4:52438782-52438801 Msa1162050:CDS 50.0%
!! CCCCACAAATTTTGGCAGAC+CGG + chr7_4:52438898-52438917 None:intergenic 50.0%
CCGGTCTGCCAAAATTTGTG+GGG - chr7_4:52438895-52438914 Msa1162050:CDS 50.0%
GTCTGCCAAAATTTGTGGGG+TGG - chr7_4:52438898-52438917 Msa1162050:CDS 50.0%
! CAGCTCCACCCCACAAATTT+TGG + chr7_4:52438906-52438925 None:intergenic 50.0%
TCTAATCGACGAACCCAGCT+GGG - chr7_4:52439334-52439353 Msa1162050:intron 50.0%
GTGTTTCATGCTAGGCTAGC+CGG - chr7_4:52439372-52439391 Msa1162050:intron 50.0%
AACGATCACAGGGACACTAG+GGG + chr7_4:52439447-52439466 None:intergenic 50.0%
!! CGTAACAGCTGAAGGTGTTG+AGG - chr7_4:52439813-52439832 Msa1162050:intron 50.0%
!! ACAGCTGAAGGTGTTGAGGA+AGG - chr7_4:52439817-52439836 Msa1162050:intron 50.0%
AACTGCAGTCTATCAGAGGG+AGG - chr7_4:52439959-52439978 Msa1162050:five_prime_UTR 50.0%
TCTATGATAAGGAACCGCGG+AGG + chr7_4:52439989-52440008 None:intergenic 50.0%
GCCAGCCGTCATCTATGATA+AGG + chr7_4:52440000-52440019 None:intergenic 50.0%
GGCATGCACTAGCTGGTTAT+TGG - chr7_4:52440490-52440509 Msa1162050:intron 50.0%
GGAACATTACGACACTGCCT+TGG - chr7_4:52440542-52440561 Msa1162050:intron 50.0%
!! GGTTGGTTTCCTAGTACTCC+CGG + chr7_4:52440585-52440604 None:intergenic 50.0%
TGTCCATGACAATGTCGGGT+TGG + chr7_4:52440602-52440621 None:intergenic 50.0%
AGCTTGTCTGTACATGGCCT+TGG - chr7_4:52440621-52440640 Msa1162050:intron 50.0%
AGCTGCGAGTAAGTGAGACT+CGG + chr7_4:52440776-52440795 None:intergenic 50.0%
CTAAGCAGACTGCTGTTGTG+CGG - chr7_4:52440889-52440908 Msa1162050:intron 50.0%
TAAGCAGACTGCTGTTGTGC+GGG - chr7_4:52440890-52440909 Msa1162050:intron 50.0%
ATATGGATGGTGTGGGAAGC+AGG + chr7_4:52440942-52440961 None:intergenic 50.0%
CTGGCTGCATAAACTCTCCA+AGG + chr7_4:52440992-52441011 None:intergenic 50.0%
GTTCTCCGTGCTCAATTACC+TGG - chr7_4:52441359-52441378 Msa1162050:intron 50.0%
TCCGTGCTCAATTACCTGGA+AGG - chr7_4:52441363-52441382 Msa1162050:intron 50.0%
GCCTTCCAGGTAATTGAGCA+CGG + chr7_4:52441367-52441386 None:intergenic 50.0%
AACCTGGTCCTATCTCTTGC+CGG + chr7_4:52441416-52441435 None:intergenic 50.0%
GTGTTTAACTGCCAAGGTGC+TGG - chr7_4:52441577-52441596 Msa1162050:five_prime_UTR 50.0%
CGCATCCATGATACATCTCC+CGG - chr7_4:52441625-52441644 Msa1162050:five_prime_UTR 50.0%
GTGTACCGGGAGATGTATCA+TGG + chr7_4:52441633-52441652 None:intergenic 50.0%
! ACCAAGTAGCTGGTGCTGAA+TGG - chr7_4:52441692-52441711 Msa1162050:five_prime_UTR 50.0%
CGCCTCGCCTGAAAATATGA+AGG + chr7_4:52441842-52441861 None:intergenic 50.0%
GAGGCGATTCGATTACCGAA+AGG - chr7_4:52441856-52441875 Msa1162050:intron 50.0%
GGCGATTCGATTACCGAAAG+GGG - chr7_4:52441858-52441877 Msa1162050:intron 50.0%
ACTGGAATCGAAGCCCCTTT+CGG + chr7_4:52441874-52441893 None:intergenic 50.0%
!! GTTTGTTGTCGGAGGCTCTA+TGG + chr7_4:52442129-52442148 None:intergenic 50.0%
GTGAGAGGAAGTGGCAAGTT+TGG - chr7_4:52442235-52442254 Msa1162050:five_prime_UTR 50.0%
CTACATCCCAGTTCCTCAAG+AGG - chr7_4:52442348-52442367 Msa1162050:intron 50.0%
GGACTGATGTTCTTCTCCCA+TGG - chr7_4:52442572-52442591 Msa1162050:intron 50.0%
CGCCGCCTTCTGTTTCACAA+GGG - chr7_4:52437581-52437600 Msa1162050:CDS 55.0%
GTAGTCTCGATCGCAGTCGT+AGG - chr7_4:52438425-52438444 Msa1162050:CDS 55.0%
GTCTAATCGACGAACCCAGC+TGG - chr7_4:52439333-52439352 Msa1162050:intron 55.0%
CTAATCGACGAACCCAGCTG+GGG - chr7_4:52439335-52439354 Msa1162050:intron 55.0%
GATGGATAGTGTCCCCAGCT+GGG + chr7_4:52439350-52439369 None:intergenic 55.0%
! TGATGGATAGTGTCCCCAGC+TGG + chr7_4:52439351-52439370 None:intergenic 55.0%
GTGTTGAGGAAGGCCTGAAG+AGG - chr7_4:52439827-52439846 Msa1162050:intron 55.0%
GAGCACAACGAACCGACATC+AGG - chr7_4:52440287-52440306 Msa1162050:intron 55.0%
GCACTAGCTGGTTATTGGGG+CGG - chr7_4:52440495-52440514 Msa1162050:intron 55.0%
CGACTGCACTGGATATGCCA+AGG + chr7_4:52440562-52440581 None:intergenic 55.0%
GCACGGAGAACAGAACCATC+AGG + chr7_4:52441350-52441369 None:intergenic 55.0%
ACAAAGAGTGAGTCGCGCGT+AGG + chr7_4:52441389-52441408 None:intergenic 55.0%
ATCCGGCAAGAGATAGGACC+AGG - chr7_4:52441411-52441430 Msa1162050:intron 55.0%
!! TTAACTGCCAAGGTGCTGGG+TGG - chr7_4:52441581-52441600 Msa1162050:five_prime_UTR 55.0%
GCCATTCAGCACCAGCTACT+TGG + chr7_4:52441696-52441715 None:intergenic 55.0%
! GTAGCTGGTGCTGAATGGCA+TGG - chr7_4:52441697-52441716 Msa1162050:five_prime_UTR 55.0%
CACAGGAGGAGCTGTAGAAG+AGG - chr7_4:52442096-52442115 Msa1162050:intron 55.0%
GTTGCGGTTGTCGTTCGGTT+AGG + chr7_4:52442202-52442221 None:intergenic 55.0%
CCATCTACCGCACACTTCAG+CGG + chr7_4:52442280-52442299 None:intergenic 55.0%
GCGCCGCCTTCTGTTTCACA+AGG - chr7_4:52437580-52437599 Msa1162050:CDS 60.0%
TGTTCCATGCCAGTCGCTGC+TGG + chr7_4:52440528-52440547 None:intergenic 60.0%
GGCATATCCAGTGCAGTCGC+CGG - chr7_4:52440563-52440582 Msa1162050:intron 60.0%
GCATATCCAGTGCAGTCGCC+GGG - chr7_4:52440564-52440583 Msa1162050:intron 60.0%
! GAAACCCTTGGCGCTGGACA+TGG - chr7_4:52440747-52440766 Msa1162050:five_prime_UTR 60.0%
TGTGGGAAGCAGGATCACGC+GGG + chr7_4:52440932-52440951 None:intergenic 60.0%
GTGTGGGAAGCAGGATCACG+CGG + chr7_4:52440933-52440952 None:intergenic 60.0%
GCGGCATGATACTCTGCTGC+CGG + chr7_4:52441142-52441161 None:intergenic 60.0%
CCGCTGAAGTGTGCGGTAGA+TGG - chr7_4:52442277-52442296 Msa1162050:intron 60.0%
! CAGAGGGAGGTACACCTCCG+CGG - chr7_4:52439972-52439991 Msa1162050:five_prime_UTR 65.0%
GGAGTGAAGCCAGCAGCGAC+TGG - chr7_4:52440516-52440535 Msa1162050:intron 65.0%
GAAGCCAGCAGCGACTGGCA+TGG - chr7_4:52440521-52440540 Msa1162050:intron 65.0%
AGTACTCCCGGCGACTGCAC+TGG + chr7_4:52440573-52440592 None:intergenic 65.0%
!! GTGCAGTCGCCGGGAGTACT+AGG - chr7_4:52440573-52440592 Msa1162050:intron 65.0%
! ACCCTTGGCGCTGGACATGG+TGG - chr7_4:52440750-52440769 Msa1162050:five_prime_UTR 65.0%
GCCACCATGTCCAGCGCCAA+GGG + chr7_4:52440754-52440773 None:intergenic 65.0%
CATGCCGCAGCTCGCGCAAT+CGG - chr7_4:52441154-52441173 Msa1162050:five_prime_UTR 65.0%
! ACCACCGATTGCGCGAGCTG+CGG + chr7_4:52441161-52441180 None:intergenic 65.0%
CCTTGCACCACCCAGCACCT+TGG + chr7_4:52441591-52441610 None:intergenic 65.0%
!! CCAAGGTGCTGGGTGGTGCA+AGG - chr7_4:52441588-52441607 Msa1162050:five_prime_UTR 65.0%
ACACTTCAGCGGACGCTGGG+AGG + chr7_4:52442269-52442288 None:intergenic 65.0%
CGCACACTTCAGCGGACGCT+GGG + chr7_4:52442272-52442291 None:intergenic 65.0%
CCAGCGTCCGCTGAAGTGTG+CGG - chr7_4:52442270-52442289 Msa1162050:intron 65.0%
GGCCACCATGTCCAGCGCCA+AGG + chr7_4:52440755-52440774 None:intergenic 70.0%
GAGTCGCGCGTAGGCCTTCC+AGG + chr7_4:52441380-52441399 None:intergenic 70.0%
CCGCACACTTCAGCGGACGC+TGG + chr7_4:52442273-52442292 None:intergenic 70.0%
GCCGCAGCTCGCGCAATCGG+TGG - chr7_4:52441157-52441176 Msa1162050:five_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 52436956 52442839 52436956 ID=Msa1162050;Name=Msa1162050
chr7_4 mRNA 52436956 52442839 52436956 ID=Msa1162050-mRNA-1;Parent=Msa1162050;Name=Msa1162050-mRNA-1;_AED=0.12;_eAED=0.12;_QI=1571|0.92|0.93|1|0.85|0.73|15|434|386
chr7_4 exon 52436956 52437752 52436956 ID=Msa1162050-mRNA-1:exon:15088;Parent=Msa1162050-mRNA-1
chr7_4 exon 52437853 52437941 52437853 ID=Msa1162050-mRNA-1:exon:15087;Parent=Msa1162050-mRNA-1
chr7_4 exon 52438047 52438264 52438047 ID=Msa1162050-mRNA-1:exon:15086;Parent=Msa1162050-mRNA-1
chr7_4 exon 52438363 52438486 52438363 ID=Msa1162050-mRNA-1:exon:15085;Parent=Msa1162050-mRNA-1
chr7_4 exon 52438598 52438665 52438598 ID=Msa1162050-mRNA-1:exon:15084;Parent=Msa1162050-mRNA-1
chr7_4 exon 52438767 52439319 52438767 ID=Msa1162050-mRNA-1:exon:15083;Parent=Msa1162050-mRNA-1
chr7_4 exon 52439441 52439569 52439441 ID=Msa1162050-mRNA-1:exon:15082;Parent=Msa1162050-mRNA-1
chr7_4 exon 52439721 52439828 52439721 ID=Msa1162050-mRNA-1:exon:15081;Parent=Msa1162050-mRNA-1
chr7_4 exon 52439947 52440038 52439947 ID=Msa1162050-mRNA-1:exon:15080;Parent=Msa1162050-mRNA-1
chr7_4 exon 52440144 52440192 52440144 ID=Msa1162050-mRNA-1:exon:15079;Parent=Msa1162050-mRNA-1
chr7_4 exon 52440685 52440906 52440685 ID=Msa1162050-mRNA-1:exon:15078;Parent=Msa1162050-mRNA-1
chr7_4 exon 52440992 52441233 52440992 ID=Msa1162050-mRNA-1:exon:15077;Parent=Msa1162050-mRNA-1
chr7_4 exon 52441523 52441733 52441523 ID=Msa1162050-mRNA-1:exon:15076;Parent=Msa1162050-mRNA-1
chr7_4 exon 52442193 52442259 52442193 ID=Msa1162050-mRNA-1:exon:15075;Parent=Msa1162050-mRNA-1
chr7_4 exon 52442643 52442839 52442643 ID=Msa1162050-mRNA-1:exon:15074;Parent=Msa1162050-mRNA-1
chr7_4 five_prime_UTR 52442643 52442839 52442643 ID=Msa1162050-mRNA-1:five_prime_utr;Parent=Msa1162050-mRNA-1
chr7_4 five_prime_UTR 52442193 52442259 52442193 ID=Msa1162050-mRNA-1:five_prime_utr;Parent=Msa1162050-mRNA-1
chr7_4 five_prime_UTR 52441523 52441733 52441523 ID=Msa1162050-mRNA-1:five_prime_utr;Parent=Msa1162050-mRNA-1
chr7_4 five_prime_UTR 52440992 52441233 52440992 ID=Msa1162050-mRNA-1:five_prime_utr;Parent=Msa1162050-mRNA-1
chr7_4 five_prime_UTR 52440685 52440906 52440685 ID=Msa1162050-mRNA-1:five_prime_utr;Parent=Msa1162050-mRNA-1
chr7_4 five_prime_UTR 52440144 52440192 52440144 ID=Msa1162050-mRNA-1:five_prime_utr;Parent=Msa1162050-mRNA-1
chr7_4 five_prime_UTR 52439947 52440038 52439947 ID=Msa1162050-mRNA-1:five_prime_utr;Parent=Msa1162050-mRNA-1
chr7_4 five_prime_UTR 52439721 52439828 52439721 ID=Msa1162050-mRNA-1:five_prime_utr;Parent=Msa1162050-mRNA-1
chr7_4 five_prime_UTR 52439441 52439569 52439441 ID=Msa1162050-mRNA-1:five_prime_utr;Parent=Msa1162050-mRNA-1
chr7_4 five_prime_UTR 52439066 52439319 52439066 ID=Msa1162050-mRNA-1:five_prime_utr;Parent=Msa1162050-mRNA-1
chr7_4 CDS 52438767 52439065 52438767 ID=Msa1162050-mRNA-1:cds;Parent=Msa1162050-mRNA-1
chr7_4 CDS 52438598 52438665 52438598 ID=Msa1162050-mRNA-1:cds;Parent=Msa1162050-mRNA-1
chr7_4 CDS 52438363 52438486 52438363 ID=Msa1162050-mRNA-1:cds;Parent=Msa1162050-mRNA-1
chr7_4 CDS 52438047 52438264 52438047 ID=Msa1162050-mRNA-1:cds;Parent=Msa1162050-mRNA-1
chr7_4 CDS 52437853 52437941 52437853 ID=Msa1162050-mRNA-1:cds;Parent=Msa1162050-mRNA-1
chr7_4 CDS 52437390 52437752 52437390 ID=Msa1162050-mRNA-1:cds;Parent=Msa1162050-mRNA-1
chr7_4 three_prime_UTR 52436956 52437389 52436956 ID=Msa1162050-mRNA-1:three_prime_utr;Parent=Msa1162050-mRNA-1
Gene Sequence

>Msa1162050

ATGTGCAAAACATTATTGAAACCCTTGGCGCTGGACATGGTGGCCGAGTCTCACTTACTCGCAGCTATCATCATGCACTTGAGGCTTCCATTGCTCGTAACTTTTCTGACAATGGATGCATCGCATGTATGTGTCATAACACTGATGGACTTTACAGTGCTAAGCAGACTGCTGTTGTGCGGGCCTCTGATGATTTTTACCCGCGTGATCCTGCTTCCCACACCATCCATATTTCGTCTGTTGCATACAATTCACTTTTCCTTGGAGAGTTTATGCAGCCAGATTGGGACATGTTCCATAGTCTACATCCGGCAGCAGAGTATCATGCCGCAGCTCGCGCAATCGGTGGTTGTCCAATTTATGTCAGGCAACCACAATTTTGACCTTCTTAGGAAGTTGGTTCTTCCTGATGGTTCTGTTCTCCGTGCTCAATTACCTGGAAGGCCTACGCGCGACTCACTCTTTGTTGATCCGGCAAGAGATAGGACCAGCTTGCTAAAAATATGGAACATGAACAAATGTACTGGAGTTGTTGGTGTGTTTAACTGCCAAGGTGCTGGGTGGTGCAAGGTAGAGAAGAAAACTCGCATCCATGATACATCTCCCGGTACACTTACTAGCTCTGTTTGTGCCTCTGATGTTGATCTCATCAACCAAGTAGCTGGTGCTGAATGGCATGGAGAGACTATTGTTTATGCTTACAGATCAGGCGAGGCGATTCGATTACCGAAAGGGGCTTCGATTCCAGTAACACTAAAGGTTCTGGAGTTTGAACTTTTCCATTTCTGTCCAATCCAAGAAATAGCGCCTGGTATATCATTTGCAGCAATAGGCCTGATGGACATGTTCAACACAGGAGGAGCTGTAGAAGAGGTTGAAATCCATAGAGCCTCCGACAACAAACAAGAGCTATTTGATGGTGAGGTTGTTTCGGAACTGACTACTTCGCTCAGTCCTAACCGAACGACAACCGCAACTATTGCTTTGAAAGTGAGAGGAAGTGGCAAGTTTGGAGTTTACTCCTCCCAGCGTCCGCTGAAGTGTGCGGTAGATGGCACCGAAACCGATTTTGACTATAACTCAGAAAATGGGTTGACAACCTTCTACATCCCAGTTCCTCAAGAGGACATGTATAAATGGTTAATAGAGATTAAGTCATAA
Protein sequence

>Msa1162050

MCKTLLKPLALDMVAESHLLAAIIMHLRLPLLVTFLTMDASHVCVITLMDFTVLSRLLLCGPLMIFTRVILLPTPSIFRLLHTIHFSLESLCSQIGTCSIVYIRQQSIMPQLAQSVVVQFMSGNHNFDLLRKLVLPDGSVLRAQLPGRPTRDSLFVDPARDRTSLLKIWNMNKCTGVVGVFNCQGAGWCKVEKKTRIHDTSPGTLTSSVCASDVDLINQVAGAEWHGETIVYAYRSGEAIRLPKGASIPVTLKVLEFELFHFCPIQEIAPGISFAAIGLMDMFNTGGAVEEVEIHRASDNKQELFDGEVVSELTTSLSPNRTTTATIALKVRGSGKFGVYSSQRPLKCAVDGTETDFDYNSENGLTTFYIPVPQEDMYKWLIEIKS*