AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0524670


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0524670 MtrunA17_Chr3g0138621 90.291 309 8 1 1 287 1 309 0.0 564
Msa0524670 MtrunA17_Chr1g0148421 73.463 309 53 2 1 287 1 302 3.19e-164 457
Msa0524670 MtrunA17_Chr1g0169881 66.990 309 72 3 1 287 1 301 2.76e-148 417
Msa0524670 MtrunA17_Chr4g0028121 67.206 247 59 1 62 286 58 304 4.42e-123 354
Msa0524670 MtrunA17_Chr7g0264931 64.961 254 67 1 56 287 16 269 3.05e-121 348
Msa0524670 MtrunA17_Chr2g0286331 54.800 250 90 2 58 285 12 260 5.89e-95 281
Msa0524670 MtrunA17_Chr4g0059881 34.859 284 135 9 29 285 1011 1271 4.19e-44 160
Msa0524670 MtrunA17_Chr8g0391161 32.323 297 150 9 27 286 953 1235 2.65e-43 157
Msa0524670 MtrunA17_Chr6g0484171 37.008 254 119 9 62 287 986 1226 6.64e-42 154
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0524670 AT5G25560.1 63.987 311 85 4 1 287 1 308 1.46e-135 385
Msa0524670 AT5G25560.5 63.987 311 85 4 1 287 1 308 1.46e-135 385
Msa0524670 AT5G25560.6 63.987 311 85 4 1 287 1 308 1.46e-135 385
Msa0524670 AT5G25560.2 63.987 311 85 4 1 287 1 308 1.46e-135 385
Msa0524670 AT5G25560.3 61.994 321 85 5 1 287 1 318 2.01e-132 378
Msa0524670 AT5G25560.4 62.701 311 84 5 1 287 1 303 5.90e-130 371
Msa0524670 AT5G22920.1 60.377 265 83 1 44 286 7 271 2.26e-117 339
Msa0524670 AT5G22920.2 65.238 210 73 0 44 253 7 216 2.69e-104 304
Msa0524670 AT5G18650.1 54.297 256 94 2 52 285 6 260 1.50e-96 285
Msa0524670 AT3G62970.1 51.587 252 100 2 55 285 26 276 7.96e-93 276
Msa0524670 AT3G62970.2 55.721 201 88 1 55 255 26 225 9.73e-83 249
Msa0524670 AT3G62970.3 55.721 201 88 1 55 255 26 225 2.18e-82 248
Msa0524670 AT1G74770.1 35.915 284 131 9 29 285 1000 1259 2.07e-47 170
Msa0524670 AT1G18910.1 37.011 281 126 9 30 283 996 1252 1.13e-45 165
Msa0524670 AT3G18290.1 36.220 254 120 8 62 287 1004 1243 1.79e-43 159
Msa0524670 AT1G74770.2 38.496 226 110 8 29 249 1000 1201 1.59e-40 150

Find 108 sgRNAs with CRISPR-Local

Find 338 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTTTGGATAGTTGTATTT+TGG 0.158519 3_4:+78142720 Msa0524670:three_prime_UTR
GAGAGAGGATATATGGAGTA+TGG 0.207183 3_4:+78138071 Msa0524670:CDS
CTTAATGGCAATTGAAAATT+AGG 0.207437 3_4:+78142601 Msa0524670:three_prime_UTR
ATGAACACATAGTCCCTTAA+TGG 0.231913 3_4:+78142586 Msa0524670:three_prime_UTR
TTCATTGTGCTTGCTGTTGC+AGG 0.244907 3_4:+78142464 Msa0524670:three_prime_UTR
ACCGGAGAAGGTGTCGTATT+AGG 0.258966 3_4:+78138189 Msa0524670:CDS
TTTCATTCAGACAGCTCTTA+TGG 0.265918 3_4:-78141567 None:intergenic
GCAGTAAATGCTTGCGTGTC+AGG 0.294400 3_4:-78136746 None:intergenic
TGTGCTTGCTGTTGCAGGTT+GGG 0.316056 3_4:+78142469 Msa0524670:three_prime_UTR
CCGGAGAAGGTGTCGTATTA+GGG 0.346547 3_4:+78138190 Msa0524670:CDS
TCTGTAGATGTCAACATTAC+CGG 0.349957 3_4:+78138171 Msa0524670:intron
TTTATGAAAGTGGTGGGGTG+GGG 0.353360 3_4:+78136834 Msa0524670:five_prime_UTR
CTTGCGAGAGAGAGGATATA+TGG 0.362778 3_4:+78138064 Msa0524670:CDS
TTTACGTTGTAATGTTTGTA+TGG 0.366566 3_4:+78142527 Msa0524670:three_prime_UTR
TCTCATATCCTCCAACTCTA+AGG 0.368205 3_4:+78136981 Msa0524670:five_prime_UTR
ATGCATGTGCTCTTCATTTG+AGG 0.389882 3_4:-78137997 None:intergenic
CAAAAGCACTGTTTCAAAAC+AGG 0.403494 3_4:-78136775 None:intergenic
AGTGCAAGCTATCTAGAAAC+AGG 0.408470 3_4:-78137860 None:intergenic
GCAGTGGTTGTGGAATTTGC+AGG 0.412763 3_4:+78139144 Msa0524670:CDS
GTGCTTGCTGTTGCAGGTTG+GGG 0.422852 3_4:+78142470 Msa0524670:three_prime_UTR
CTCCATTCTTATGAAGATAG+TGG 0.424980 3_4:+78142364 Msa0524670:three_prime_UTR
GACAGCTCTTATGGATTGTA+TGG 0.427608 3_4:-78141558 None:intergenic
TTCAATGCAACCGATGCAAA+TGG 0.428670 3_4:-78142391 None:intergenic
GTTTATGAAAGTGGTGGGGT+GGG 0.434200 3_4:+78136833 Msa0524670:five_prime_UTR
TGCATGTGCTCTTCATTTGA+GGG 0.437426 3_4:-78137996 None:intergenic
TGCAGGTTGGGGCAACTAGT+TGG 0.440988 3_4:+78142481 Msa0524670:three_prime_UTR
CAGTACCATTGCAGTGGTTG+TGG 0.446831 3_4:+78139134 Msa0524670:CDS
TCCCCGCCATCAGGTCAAAC+AGG 0.452846 3_4:+78138641 Msa0524670:CDS
TTATGAAAGTGGTGGGGTGG+GGG 0.458323 3_4:+78136835 Msa0524670:five_prime_UTR
TTTGTGCGACAAGATGAAAC+TGG 0.460355 3_4:-78142246 None:intergenic
AGCCACTATCTTCATAAGAA+TGG 0.471867 3_4:-78142366 None:intergenic
AGAATGGCCGGTCTTGTGTT+CGG 0.477658 3_4:-78136954 None:intergenic
ATTGTTACCTCAAAACAAAC+AGG 0.479044 3_4:-78141399 None:intergenic
TTCAATTTGAGTGCAATGAC+AGG 0.480009 3_4:+78137940 Msa0524670:CDS
TTTGGCATGGGAAAATCTGC+TGG 0.481627 3_4:+78142738 Msa0524670:three_prime_UTR
CGTAAACAATAGAGCACAAG+GGG 0.484768 3_4:-78142510 None:intergenic
TATAACACAAGACAAATAAG+AGG 0.485710 3_4:+78142289 Msa0524670:CDS
AAACTGACTTTGAGCACAAA+GGG 0.486545 3_4:-78141706 None:intergenic
AGAGAGGATATATGGAGTAT+GGG 0.487300 3_4:+78138072 Msa0524670:CDS
TGGGTCAGGGGAGCTCTAAT+CGG 0.489772 3_4:+78136927 Msa0524670:five_prime_UTR
GGATCAAAGAGGAATGAGAA+TGG 0.489861 3_4:-78136879 None:intergenic
TACCTGTTTGACCTGATGGC+GGG 0.493489 3_4:-78138643 None:intergenic
TTACTAGTAGTTTATGAAAG+TGG 0.500648 3_4:+78136824 Msa0524670:five_prime_UTR
TATCAATTGCGGTGTGTGCA+TGG 0.500787 3_4:+78139058 Msa0524670:CDS
TAGTAGTTTATGAAAGTGGT+GGG 0.507761 3_4:+78136828 Msa0524670:five_prime_UTR
CCCTAATACGACACCTTCTC+CGG 0.508236 3_4:-78138190 None:intergenic
AACATACCTGTTTGACCTGA+TGG 0.508780 3_4:-78138647 None:intergenic
GTCAGTTTGTGATATGTCAA+AGG 0.511690 3_4:+78141721 Msa0524670:CDS
ACACGACATTCCCCGCCATC+AGG 0.513051 3_4:+78138632 Msa0524670:CDS
TTGTGCTTGCTGTTGCAGGT+TGG 0.513938 3_4:+78142468 Msa0524670:three_prime_UTR
GTTTATACATGCAGGTCACT+AGG 0.515281 3_4:+78137830 Msa0524670:intron
CTGAAAATAGTGAGCATCAT+GGG 0.515352 3_4:+78137888 Msa0524670:exon
AAATAAGAATAAAAGCACTT+TGG 0.517518 3_4:+78142705 Msa0524670:three_prime_UTR
AACGGTCACCCTTGTGTGGA+AGG 0.518944 3_4:+78141357 Msa0524670:CDS
TGCATTGCTCCTTCCACACA+AGG 0.524587 3_4:-78141366 None:intergenic
GAGGATATGAGAGGAGAGAA+TGG 0.527699 3_4:-78136970 None:intergenic
AGTTTATGAAAGTGGTGGGG+TGG 0.528004 3_4:+78136832 Msa0524670:five_prime_UTR
GATGTCAACATTACCGGAGA+AGG 0.534230 3_4:+78138177 Msa0524670:intron
GATCAAAGAGGAATGAGAAT+GGG 0.534348 3_4:-78136878 None:intergenic
ATCGGTTGCATTGAATATGA+TGG 0.538810 3_4:+78142399 Msa0524670:three_prime_UTR
TCAATGCAACCGATGCAAAT+GGG 0.542694 3_4:-78142390 None:intergenic
CTAGTAGTTTATGAAAGTGG+TGG 0.544149 3_4:+78136827 Msa0524670:five_prime_UTR
AGAGCTGTCTGAATGAAATG+AGG 0.554066 3_4:+78141572 Msa0524670:CDS
CCCAGCAGACAAAACAAAGA+AGG 0.556816 3_4:-78136908 None:intergenic
TCAAATATCTCATTGCAACA+AGG 0.556883 3_4:-78138215 None:intergenic
TTACGTTGTAATGTTTGTAT+GGG 0.557569 3_4:+78142528 Msa0524670:three_prime_UTR
ATCAATGACTTGCGAGAGAG+AGG 0.557776 3_4:+78138056 Msa0524670:CDS
ACCTGTTTGACCTGATGGCG+GGG 0.562153 3_4:-78138642 None:intergenic
GCACTCAAATTGAAGAGGCT+CGG 0.562219 3_4:-78137931 None:intergenic
CAGTAAATGCTTGCGTGTCA+GGG 0.562298 3_4:-78136745 None:intergenic
TGGATCCTTTGCAATGATTG+CGG 0.563350 3_4:+78142208 Msa0524670:CDS
TCTGAAAATAGTGAGCATCA+TGG 0.568624 3_4:+78137887 Msa0524670:exon
ACAAAACAAAGAAGGATGGA+TGG 0.570330 3_4:-78136900 None:intergenic
AGTGAGCATCATGGGAGAAG+TGG 0.570618 3_4:+78137896 Msa0524670:exon
ATCAATTGCGGTGTGTGCAT+GGG 0.579084 3_4:+78139059 Msa0524670:CDS
ATATGAGAGGAGAGAATGGC+CGG 0.583600 3_4:-78136966 None:intergenic
ACAACGAACCTTAGAGTTGG+AGG 0.583681 3_4:-78136989 None:intergenic
GCAGACAAAACAAAGAAGGA+TGG 0.587703 3_4:-78136904 None:intergenic
CGGAGCTCCGAACACAAGAC+CGG 0.589759 3_4:+78136947 Msa0524670:five_prime_UTR
TCATTGCACTCAAATTGAAG+AGG 0.591774 3_4:-78137936 None:intergenic
TGGAAATGCATGAGTTGAGC+GGG 0.593340 3_4:+78142419 Msa0524670:three_prime_UTR
CAAATATCTCATTGCAACAA+GGG 0.593446 3_4:-78138214 None:intergenic
GAGCTGTCTGAATGAAATGA+GGG 0.595369 3_4:+78141573 Msa0524670:CDS
GGAACAACGAACCTTAGAGT+TGG 0.597252 3_4:-78136992 None:intergenic
AAATTCCACAACCACTGCAA+TGG 0.598547 3_4:-78139139 None:intergenic
CAAACTGACTTTGAGCACAA+AGG 0.599345 3_4:-78141707 None:intergenic
TTCTTCCACTGCTACAAGTG+TGG 0.601466 3_4:+78141205 Msa0524670:CDS
TCAAATGAAGAGCACATGCA+TGG 0.607616 3_4:+78137999 Msa0524670:CDS
AACGTAAACAATAGAGCACA+AGG 0.608424 3_4:-78142512 None:intergenic
ACTTACCACACTTGTAGCAG+TGG 0.608628 3_4:-78141210 None:intergenic
AAATATCTCATTGCAACAAG+GGG 0.613018 3_4:-78138213 None:intergenic
ACTCTGTGAGACTGAACAAG+AGG 0.613028 3_4:+78138783 Msa0524670:CDS
TAGTGGCTACCCATTTGCAT+CGG 0.618494 3_4:+78142381 Msa0524670:three_prime_UTR
TTGTCGCCATTGTCACAATG+AGG 0.627282 3_4:+78138238 Msa0524670:CDS
AGTAGTTTATGAAAGTGGTG+GGG 0.630647 3_4:+78136829 Msa0524670:five_prime_UTR
ATACCTGTTTGACCTGATGG+CGG 0.637436 3_4:-78138644 None:intergenic
CAGCAGAACTGTATCAATTG+CGG 0.643368 3_4:+78139047 Msa0524670:CDS
ATTAGGCTGTAATAAACGTG+TGG 0.647002 3_4:+78142618 Msa0524670:three_prime_UTR
TTAGAGTTGGAGGATATGAG+AGG 0.650901 3_4:-78136979 None:intergenic
CAATGACAGGAATCTTATCA+CGG 0.652971 3_4:+78137953 Msa0524670:CDS
AAGCAGCAGTACCATTGCAG+TGG 0.661184 3_4:+78139128 Msa0524670:CDS
GAAGGATGGATGGATCAAAG+AGG 0.670375 3_4:-78136890 None:intergenic
TGTATGGCCGCAATGCAACA+CGG 0.679908 3_4:-78141542 None:intergenic
ACGTAAACAATAGAGCACAA+GGG 0.680213 3_4:-78142511 None:intergenic
ATGGAAATGCATGAGTTGAG+CGG 0.688899 3_4:+78142418 Msa0524670:three_prime_UTR
GCATTGCTCCTTCCACACAA+GGG 0.704197 3_4:-78141365 None:intergenic
GATGTCTCCGTGTTGCATTG+CGG 0.707696 3_4:+78141535 Msa0524670:CDS
GTAAACAATAGAGCACAAGG+GGG 0.858578 3_4:-78142509 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTTTTATATATTTAA+AGG + chr3_4:78137649-78137668 Msa0524670:intron 0.0%
!!! TTTTAATTTCTTTTATAACT+TGG + chr3_4:78137069-78137088 Msa0524670:intron 10.0%
!! ATATAAAATAAAGTCAAATT+GGG - chr3_4:78142012-78142031 None:intergenic 10.0%
!! AATATAAAATAAAGTCAAAT+TGG - chr3_4:78142013-78142032 None:intergenic 10.0%
!!! ATTTGACTTTATTTTATATT+TGG + chr3_4:78142013-78142032 Msa0524670:intron 10.0%
!!! ATTTTTTAATATACAGTTCA+AGG + chr3_4:78137381-78137400 Msa0524670:intron 15.0%
!! TTTGTTTAAGTAATTAAGTA+AGG - chr3_4:78137482-78137501 None:intergenic 15.0%
!!! AAATCATTAATTTTTTACGA+TGG - chr3_4:78138149-78138168 None:intergenic 15.0%
!! TTCTAAATGATATAATGAAA+TGG - chr3_4:78138973-78138992 None:intergenic 15.0%
!! TATTTAAGAATTGAGATCAA+TGG - chr3_4:78137207-78137226 None:intergenic 20.0%
!! AAAATAATCGATAATTGATG+TGG - chr3_4:78137366-78137385 None:intergenic 20.0%
!!! TTATCAAATGCTTTTTCTTT+AGG - chr3_4:78137696-78137715 None:intergenic 20.0%
!!! TGTTATTGCTAAATTGTTTT+CGG + chr3_4:78137791-78137810 Msa0524670:intron 20.0%
!! TACAATATAATCCTCATTTA+TGG - chr3_4:78138353-78138372 None:intergenic 20.0%
!!! ATATTTTCTTTACTATCTCT+TGG + chr3_4:78138813-78138832 Msa0524670:intron 20.0%
!! TGTTATGAAATTACTTATGA+CGG + chr3_4:78138856-78138875 Msa0524670:intron 20.0%
!! TCTCAAAATTAATAACTGTT+TGG - chr3_4:78138906-78138925 None:intergenic 20.0%
!!! TTCATTATATCATTTAGAAC+TGG + chr3_4:78138974-78138993 Msa0524670:intron 20.0%
!!! ATATGTTTTAAAAACAGAAC+TGG + chr3_4:78141169-78141188 Msa0524670:intron 20.0%
!!! TTTGTATTTGATTTTGTATC+AGG + chr3_4:78141675-78141694 Msa0524670:intron 20.0%
!!! ATTTTATTAAGATATGGTTC+AGG - chr3_4:78141788-78141807 None:intergenic 20.0%
!! TGAACCATATCTTAATAAAA+TGG + chr3_4:78141787-78141806 Msa0524670:intron 20.0%
!!! CTTACCATTTTATTAAGATA+TGG - chr3_4:78141794-78141813 None:intergenic 20.0%
!!! TAATTTTCAATTGCCATTAA+GGG - chr3_4:78142602-78142621 None:intergenic 20.0%
!!! TAGTATTTTTCTTAAGACAT+GGG - chr3_4:78142670-78142689 None:intergenic 20.0%
!!! ATAGTATTTTTCTTAAGACA+TGG - chr3_4:78142671-78142690 None:intergenic 20.0%
!!! AAATAAGAATAAAAGCACTT+TGG + chr3_4:78142705-78142724 Msa0524670:three_prime_UTR 20.0%
! TTACTAGTAGTTTATGAAAG+TGG + chr3_4:78136824-78136843 Msa0524670:five_prime_UTR 25.0%
! TCAAACACAAATAACAAGTA+TGG - chr3_4:78137028-78137047 None:intergenic 25.0%
!! TTATTAGTTTAAGAAACCTG+AGG + chr3_4:78137256-78137275 Msa0524670:intron 25.0%
! AAGTAAAATAAATCTACCTC+AGG - chr3_4:78137275-78137294 None:intergenic 25.0%
!! GTTATTGCTAAATTGTTTTC+GGG + chr3_4:78137792-78137811 Msa0524670:intron 25.0%
! CTAAATATGTTTATACATGC+AGG + chr3_4:78137822-78137841 Msa0524670:intron 25.0%
! GATTGAAAAGCAAATAGTAT+GGG - chr3_4:78138111-78138130 None:intergenic 25.0%
! AGATTGAAAAGCAAATAGTA+TGG - chr3_4:78138112-78138131 None:intergenic 25.0%
!!! TAATTTTTTACGATGGCAAA+GGG - chr3_4:78138142-78138161 None:intergenic 25.0%
!!! TTAATTTTTTACGATGGCAA+AGG - chr3_4:78138143-78138162 None:intergenic 25.0%
! ACTTATGACTTAGAATGAAA+TGG + chr3_4:78138506-78138525 Msa0524670:intron 25.0%
! CAAAATTAATAACTGTTTGG+AGG - chr3_4:78138903-78138922 None:intergenic 25.0%
!!! CAAATTGGTTAGCTTATTAT+CGG - chr3_4:78139176-78139195 None:intergenic 25.0%
! TTTAGCTAACTTAACCAAAT+TGG - chr3_4:78139191-78139210 None:intergenic 25.0%
! TCATTATGACTATTATCCTT+GGG - chr3_4:78139350-78139369 None:intergenic 25.0%
! ATCATTATGACTATTATCCT+TGG - chr3_4:78139351-78139370 None:intergenic 25.0%
! AGGATAATAGTCATAATGAT+CGG + chr3_4:78139351-78139370 Msa0524670:intron 25.0%
! CACAACTAAACTCTATATAT+AGG - chr3_4:78139482-78139501 None:intergenic 25.0%
! ATTGTGTTTCAAACTCAAAT+TGG - chr3_4:78139619-78139638 None:intergenic 25.0%
! ACTGAAGTAACTAAGTAAAA+TGG + chr3_4:78139660-78139679 Msa0524670:intron 25.0%
! CTGAAGTAACTAAGTAAAAT+GGG + chr3_4:78139661-78139680 Msa0524670:intron 25.0%
! TGAAGTAACTAAGTAAAATG+GGG + chr3_4:78139662-78139681 Msa0524670:intron 25.0%
!! AAATAAGCAGCTTTTATGTT+TGG - chr3_4:78139849-78139868 None:intergenic 25.0%
! TCATTATGACTATTATCCTT+GGG - chr3_4:78139350-78139369 None:intergenic 25.0%
! ATCATTATGACTATTATCCT+TGG - chr3_4:78139351-78139370 None:intergenic 25.0%
! AGGATAATAGTCATAATGAT+CGG + chr3_4:78139351-78139370 Msa0524670:intron 25.0%
! CACAACTAAACTCTATATAT+AGG - chr3_4:78139482-78139501 None:intergenic 25.0%
! TACTCAACTTTGTTGAAAAA+CGG + chr3_4:78141339-78141358 Msa0524670:CDS 25.0%
! CATAAATTCAACAAATTGAC+AGG - chr3_4:78141454-78141473 None:intergenic 25.0%
!!! CTGTCAATTTGTTGAATTTA+TGG + chr3_4:78141452-78141471 Msa0524670:intron 25.0%
!!! TCAATTTGTTGAATTTATGG+AGG + chr3_4:78141455-78141474 Msa0524670:intron 25.0%
! ACAAATCACTACAATTGAAA+TGG - chr3_4:78141648-78141667 None:intergenic 25.0%
! CAAAATCAAATACAAAGTTC+AGG - chr3_4:78141671-78141690 None:intergenic 25.0%
! TCAATACAAACAAGTCTAAA+AGG - chr3_4:78141821-78141840 None:intergenic 25.0%
! TATAGAAATAGTCTATACAC+AGG + chr3_4:78142037-78142056 Msa0524670:intron 25.0%
! ATAGAAATAGTCTATACACA+GGG + chr3_4:78142038-78142057 Msa0524670:intron 25.0%
! TATAACACAAGACAAATAAG+AGG + chr3_4:78142289-78142308 Msa0524670:CDS 25.0%
! TTTACGTTGTAATGTTTGTA+TGG + chr3_4:78142527-78142546 Msa0524670:three_prime_UTR 25.0%
! TTACGTTGTAATGTTTGTAT+GGG + chr3_4:78142528-78142547 Msa0524670:three_prime_UTR 25.0%
!! CTAATTTTCAATTGCCATTA+AGG - chr3_4:78142603-78142622 None:intergenic 25.0%
! CTTAATGGCAATTGAAAATT+AGG + chr3_4:78142601-78142620 Msa0524670:three_prime_UTR 25.0%
TAGTAGTTTATGAAAGTGGT+GGG + chr3_4:78136828-78136847 Msa0524670:five_prime_UTR 30.0%
AACAAGTATGGAAGAAAGTA+AGG - chr3_4:78137016-78137035 None:intergenic 30.0%
!! ATTCTTTTGATTCATGTAGC+TGG + chr3_4:78137108-78137127 Msa0524670:intron 30.0%
TAAAACCATGAACATGAACA+TGG - chr3_4:78137302-78137321 None:intergenic 30.0%
! ATGGATTATAGGCAATAAGT+CGG - chr3_4:78137340-78137359 None:intergenic 30.0%
AAATATCTCATTGCAACAAG+GGG - chr3_4:78138216-78138235 None:intergenic 30.0%
CAAATATCTCATTGCAACAA+GGG - chr3_4:78138217-78138236 None:intergenic 30.0%
TCAAATATCTCATTGCAACA+AGG - chr3_4:78138218-78138237 None:intergenic 30.0%
CTGTTCAGATATTTCATGTA+TGG + chr3_4:78138309-78138328 Msa0524670:intron 30.0%
TTCAGATATTTCATGTATGG+TGG + chr3_4:78138312-78138331 Msa0524670:intron 30.0%
TTAAGACTCTCGAATTTCTT+GGG + chr3_4:78138382-78138401 Msa0524670:intron 30.0%
CAAATTTCATAGACAACTTC+AGG + chr3_4:78138467-78138486 Msa0524670:intron 30.0%
AAAATTGCAGATCTTCAATG+AGG - chr3_4:78138687-78138706 None:intergenic 30.0%
!!! CTGTTGTTATTTTTCTGATG+AGG + chr3_4:78138720-78138739 Msa0524670:intron 30.0%
! AATGAATGCTCCAATTTTTC+AGG + chr3_4:78138750-78138769 Msa0524670:intron 30.0%
GAACATATCACCTGAAAAAT+TGG - chr3_4:78138763-78138782 None:intergenic 30.0%
CGATAATAAGCTAACCAATT+TGG + chr3_4:78139174-78139193 Msa0524670:intron 30.0%
GAAAAAGTCATATCAACCTT+GGG - chr3_4:78139244-78139263 None:intergenic 30.0%
AGAAAAAGTCATATCAACCT+TGG - chr3_4:78139245-78139264 None:intergenic 30.0%
!!! TCTTGTTTTTCCTTTTCTCT+TGG + chr3_4:78139264-78139283 Msa0524670:intron 30.0%
GAAGTAACTAAGTAAAATGG+GGG + chr3_4:78139663-78139682 Msa0524670:intron 30.0%
TAAGGAAGAAAAGAAGAAGA+AGG - chr3_4:78139777-78139796 None:intergenic 30.0%
!!! AAAAGCACTTTTGCAACAAA+AGG - chr3_4:78139814-78139833 None:intergenic 30.0%
!!! CTTTTGGAATAAGTTGTTTG+TGG - chr3_4:78139926-78139945 None:intergenic 30.0%
!!! AAAGTGTTTTGATTTCGTTC+AGG - chr3_4:78139992-78140011 None:intergenic 30.0%
TCATCATGTAACTTGAGAAA+CGG + chr3_4:78140332-78140351 Msa0524670:intron 30.0%
ATCTTCACCAATATCTGAAT+CGG + chr3_4:78140787-78140806 Msa0524670:intron 30.0%
!!! AGACTTTAGTGCACTTTTTT+TGG + chr3_4:78141118-78141137 Msa0524670:intron 30.0%
!!! TGTTTTAAAAACAGAACTGG+AGG + chr3_4:78141172-78141191 Msa0524670:intron 30.0%
!!! GTTTTAAAAACAGAACTGGA+GGG + chr3_4:78141173-78141192 Msa0524670:intron 30.0%
AAGAAAAACAGTTATGAAGC+AGG - chr3_4:78141293-78141312 None:intergenic 30.0%
TCTTCATAACTTCTTTGCAT+AGG + chr3_4:78141309-78141328 Msa0524670:intron 30.0%
ATTGTTACCTCAAAACAAAC+AGG - chr3_4:78141402-78141421 None:intergenic 30.0%
GCTTATCTCAGTTTATCTAT+TGG - chr3_4:78141976-78141995 None:intergenic 30.0%
!!! ATTAAGCTGTTTTTCCAAAC+AGG + chr3_4:78142078-78142097 Msa0524670:intron 30.0%
!!! TTAAGCTGTTTTTCCAAACA+GGG + chr3_4:78142079-78142098 Msa0524670:intron 30.0%
AAATAATGATCAACCCTGTT+TGG - chr3_4:78142095-78142114 None:intergenic 30.0%
TCATCATGTACATAGTTGTA+TGG - chr3_4:78142137-78142156 None:intergenic 30.0%
! TTTTTCTTAAGACATGGGAA+CGG - chr3_4:78142665-78142684 None:intergenic 30.0%
! CACTTTGGATAGTTGTATTT+TGG + chr3_4:78142720-78142739 Msa0524670:three_prime_UTR 30.0%
!! CAAAAGCACTGTTTCAAAAC+AGG - chr3_4:78136778-78136797 None:intergenic 35.0%
!!! CTGTTTTGAAACAGTGCTTT+TGG + chr3_4:78136776-78136795 Msa0524670:five_prime_UTR 35.0%
!! TTTGAAACAGTGCTTTTGGA+AGG + chr3_4:78136780-78136799 Msa0524670:five_prime_UTR 35.0%
CTAGTAGTTTATGAAAGTGG+TGG + chr3_4:78136827-78136846 Msa0524670:five_prime_UTR 35.0%
AGTAGTTTATGAAAGTGGTG+GGG + chr3_4:78136829-78136848 Msa0524670:five_prime_UTR 35.0%
GATCAAAGAGGAATGAGAAT+GGG - chr3_4:78136881-78136900 None:intergenic 35.0%
ACAAAACAAAGAAGGATGGA+TGG - chr3_4:78136903-78136922 None:intergenic 35.0%
TACAACCATGTTCATGTTCA+TGG + chr3_4:78137294-78137313 Msa0524670:intron 35.0%
CAATAAGTCGGTGACATATT+TGG - chr3_4:78137328-78137347 None:intergenic 35.0%
! TGATGTGGCATATGGATTAT+AGG - chr3_4:78137351-78137370 None:intergenic 35.0%
TCGATAATTGATGTGGCATA+TGG - chr3_4:78137359-78137378 None:intergenic 35.0%
CATTTGATAAGTAACTGTCC+AGG + chr3_4:78137706-78137725 Msa0524670:intron 35.0%
AAAAATTCAAGGTCTGAACC+TGG - chr3_4:78137727-78137746 None:intergenic 35.0%
! AGGTTCAGACCTTGAATTTT+TGG + chr3_4:78137726-78137745 Msa0524670:intron 35.0%
!!! AGACCTTGAATTTTTGGAAC+AGG + chr3_4:78137732-78137751 Msa0524670:intron 35.0%
!!! CTTGAATTTTTGGAACAGGT+CGG + chr3_4:78137736-78137755 Msa0524670:intron 35.0%
TCTGAAAATAGTGAGCATCA+TGG + chr3_4:78137887-78137906 Msa0524670:exon 35.0%
CTGAAAATAGTGAGCATCAT+GGG + chr3_4:78137888-78137907 Msa0524670:exon 35.0%
TCATTGCACTCAAATTGAAG+AGG - chr3_4:78137939-78137958 None:intergenic 35.0%
TTCAATTTGAGTGCAATGAC+AGG + chr3_4:78137940-78137959 Msa0524670:CDS 35.0%
CAATGACAGGAATCTTATCA+CGG + chr3_4:78137953-78137972 Msa0524670:CDS 35.0%
! TCATTGATCTTTTTGTGGTC+TGG - chr3_4:78138044-78138063 None:intergenic 35.0%
! GCAAGTCATTGATCTTTTTG+TGG - chr3_4:78138049-78138068 None:intergenic 35.0%
AGAGAGGATATATGGAGTAT+GGG + chr3_4:78138072-78138091 Msa0524670:CDS 35.0%
TCTGTAGATGTCAACATTAC+CGG + chr3_4:78138171-78138190 Msa0524670:intron 35.0%
CACAGTCTAGTATTTCATGA+TGG + chr3_4:78138278-78138297 Msa0524670:intron 35.0%
CTTATTGCTTGCCATAAATG+AGG + chr3_4:78138339-78138358 Msa0524670:intron 35.0%
GTTAAGACTCTCGAATTTCT+TGG + chr3_4:78138381-78138400 Msa0524670:intron 35.0%
!!! TGCATGGGCAATTATTTTTG+CGG + chr3_4:78139074-78139093 Msa0524670:CDS 35.0%
AATGTATTGTTCCTATCCCA+AGG + chr3_4:78139225-78139244 Msa0524670:intron 35.0%
! TGTTGCTTAACCAAGAGAAA+AGG - chr3_4:78139277-78139296 None:intergenic 35.0%
AATAGTCATAATGATCGGCA+AGG + chr3_4:78139356-78139375 Msa0524670:intron 35.0%
AGTGCATAGTTGTATTCATG+AGG + chr3_4:78139382-78139401 Msa0524670:intron 35.0%
AGATAACCATAGAGACTCAT+AGG + chr3_4:78139406-78139425 Msa0524670:intron 35.0%
!!! TTTCCCATTTTGAGTTTGAG+GGG - chr3_4:78139591-78139610 None:intergenic 35.0%
!!! CTTTCCCATTTTGAGTTTGA+GGG - chr3_4:78139592-78139611 None:intergenic 35.0%
!!! ACTTTCCCATTTTGAGTTTG+AGG - chr3_4:78139593-78139612 None:intergenic 35.0%
ATGAAAAACATAGAAAGCCC+AGG + chr3_4:78139713-78139732 Msa0524670:intron 35.0%
TAACGTGATTCAATAAGGCT+GGG - chr3_4:78139903-78139922 None:intergenic 35.0%
! TGTGGTAACGTGATTCAATA+AGG - chr3_4:78139908-78139927 None:intergenic 35.0%
!!! TGCAATGCAAAAAGTGCTTT+TGG - chr3_4:78139942-78139961 None:intergenic 35.0%
TAATCGCTTTGCTTCTGTAA+TGG + chr3_4:78140155-78140174 Msa0524670:intron 35.0%
TCAATCGAACCAAAATTCGA+TGG - chr3_4:78140662-78140681 None:intergenic 35.0%
!!! TCGAATTTTGGTTCGATTGA+AGG + chr3_4:78140662-78140681 Msa0524670:intron 35.0%
!! TTTTGATTCTCCGATTGTTC+CGG - chr3_4:78140696-78140715 None:intergenic 35.0%
TGAAGAATCAAGAATGGAAG+AGG + chr3_4:78140742-78140761 Msa0524670:intron 35.0%
ACATCATCATCTTCATTCCT+AGG + chr3_4:78140821-78140840 Msa0524670:intron 35.0%
CATCATCATCTTCATTCCTA+GGG + chr3_4:78140822-78140841 Msa0524670:intron 35.0%
AATAGTCATAATGATCGGCA+AGG + chr3_4:78139356-78139375 Msa0524670:intron 35.0%
AGTGCATAGTTGTATTCATG+AGG + chr3_4:78139382-78139401 Msa0524670:intron 35.0%
AGATAACCATAGAGACTCAT+AGG + chr3_4:78139406-78139425 Msa0524670:intron 35.0%
!!! AGATTGTCCTGTTTGTTTTG+AGG + chr3_4:78141392-78141411 Msa0524670:CDS 35.0%
CATAACTACACTACCGAAAT+TGG + chr3_4:78141482-78141501 Msa0524670:intron 35.0%
AATACTGCGATCACCAATTT+CGG - chr3_4:78141498-78141517 None:intergenic 35.0%
TTTCATTCAGACAGCTCTTA+TGG - chr3_4:78141570-78141589 None:intergenic 35.0%
! AAACTGACTTTGAGCACAAA+GGG - chr3_4:78141709-78141728 None:intergenic 35.0%
GTCAGTTTGTGATATGTCAA+AGG + chr3_4:78141721-78141740 Msa0524670:CDS 35.0%
!! GGAAAAAATTGACTTGGAAC+TGG + chr3_4:78141748-78141767 Msa0524670:intron 35.0%
TTAAGATATGGTTCAGGCAT+CGG - chr3_4:78141782-78141801 None:intergenic 35.0%
AAAGTCAAATTGGGTCTCTT+TGG - chr3_4:78142003-78142022 None:intergenic 35.0%
! ATTTTGTTCATATGCCATCG+TGG + chr3_4:78142111-78142130 Msa0524670:intron 35.0%
! CAAGAGAGTGCATAAAATCT+TGG - chr3_4:78142181-78142200 None:intergenic 35.0%
! ATTTTATGCACTCTCTTGAC+AGG + chr3_4:78142183-78142202 Msa0524670:intron 35.0%
CTCCATTCTTATGAAGATAG+TGG + chr3_4:78142364-78142383 Msa0524670:three_prime_UTR 35.0%
AGCCACTATCTTCATAAGAA+TGG - chr3_4:78142369-78142388 None:intergenic 35.0%
ATCGGTTGCATTGAATATGA+TGG + chr3_4:78142399-78142418 Msa0524670:three_prime_UTR 35.0%
ACGTAAACAATAGAGCACAA+GGG - chr3_4:78142514-78142533 None:intergenic 35.0%
AACGTAAACAATAGAGCACA+AGG - chr3_4:78142515-78142534 None:intergenic 35.0%
ATGAACACATAGTCCCTTAA+TGG + chr3_4:78142586-78142605 Msa0524670:three_prime_UTR 35.0%
ATTAGGCTGTAATAAACGTG+TGG + chr3_4:78142618-78142637 Msa0524670:three_prime_UTR 35.0%
! TTTTCTTAAGACATGGGAAC+GGG - chr3_4:78142664-78142683 None:intergenic 35.0%
!!! TGGATAGTTGTATTTTGGCA+TGG + chr3_4:78142725-78142744 Msa0524670:three_prime_UTR 35.0%
!!! GGATAGTTGTATTTTGGCAT+GGG + chr3_4:78142726-78142745 Msa0524670:three_prime_UTR 35.0%
GGATCAAAGAGGAATGAGAA+TGG - chr3_4:78136882-78136901 None:intergenic 40.0%
GCAGACAAAACAAAGAAGGA+TGG - chr3_4:78136907-78136926 None:intergenic 40.0%
!!! TCCTTCTTTGTTTTGTCTGC+TGG + chr3_4:78136907-78136926 Msa0524670:five_prime_UTR 40.0%
!!! CCTTCTTTGTTTTGTCTGCT+GGG + chr3_4:78136908-78136927 Msa0524670:five_prime_UTR 40.0%
TTAGAGTTGGAGGATATGAG+AGG - chr3_4:78136982-78137001 None:intergenic 40.0%
TCTCATATCCTCCAACTCTA+AGG + chr3_4:78136981-78137000 Msa0524670:five_prime_UTR 40.0%
TGTCAGACACTTTAGTAGAC+TGG + chr3_4:78137228-78137247 Msa0524670:intron 40.0%
CGACCTGTTCCAAAAATTCA+AGG - chr3_4:78137738-78137757 None:intergenic 40.0%
GTTTATACATGCAGGTCACT+AGG + chr3_4:78137830-78137849 Msa0524670:intron 40.0%
AGTGCAAGCTATCTAGAAAC+AGG - chr3_4:78137863-78137882 None:intergenic 40.0%
TGCATGTGCTCTTCATTTGA+GGG - chr3_4:78137999-78138018 None:intergenic 40.0%
ATGCATGTGCTCTTCATTTG+AGG - chr3_4:78138000-78138019 None:intergenic 40.0%
! TCAAATGAAGAGCACATGCA+TGG + chr3_4:78137999-78138018 Msa0524670:CDS 40.0%
! TCTTTTTGTGGTCTGGTGAT+TGG - chr3_4:78138037-78138056 None:intergenic 40.0%
GAGAGAGGATATATGGAGTA+TGG + chr3_4:78138071-78138090 Msa0524670:CDS 40.0%
! CTTTTGCCTCATTGTGACAA+TGG - chr3_4:78138247-78138266 None:intergenic 40.0%
! CTGCAGCATCACTTTCATTT+TGG + chr3_4:78138552-78138571 Msa0524670:intron 40.0%
AACATACCTGTTTGACCTGA+TGG - chr3_4:78138650-78138669 None:intergenic 40.0%
ATTGCAGATCTTCAATGAGG+TGG - chr3_4:78138684-78138703 None:intergenic 40.0%
CAGCAGAACTGTATCAATTG+CGG + chr3_4:78139047-78139066 Msa0524670:CDS 40.0%
!!! GCATGGGCAATTATTTTTGC+GGG + chr3_4:78139075-78139094 Msa0524670:CDS 40.0%
AAATTCCACAACCACTGCAA+TGG - chr3_4:78139142-78139161 None:intergenic 40.0%
AGTCATATCAACCTTGGGAT+AGG - chr3_4:78139239-78139258 None:intergenic 40.0%
TTACGAATCAGAGAATCCCA+AGG + chr3_4:78139331-78139350 Msa0524670:intron 40.0%
GATTCTCCTATGAGTCTCTA+TGG - chr3_4:78139415-78139434 None:intergenic 40.0%
AGCAAGCTATCTAGATAGCT+TGG - chr3_4:78139534-78139553 None:intergenic 40.0%
!!! TTCCCATTTTGAGTTTGAGG+GGG - chr3_4:78139590-78139609 None:intergenic 40.0%
TGATTCCCATCAGAACATGT+GGG - chr3_4:78139739-78139758 None:intergenic 40.0%
GTAACGTGATTCAATAAGGC+TGG - chr3_4:78139904-78139923 None:intergenic 40.0%
CTGTCAGTGATGATTGAAAC+TGG + chr3_4:78140047-78140066 Msa0524670:intron 40.0%
ACAACCGGAAACGAATTTGA+CGG + chr3_4:78140240-78140259 Msa0524670:intron 40.0%
TTCTCCGTCAAATTCGTTTC+CGG - chr3_4:78140247-78140266 None:intergenic 40.0%
CCAATCATCAATTTCGATCC+CGG - chr3_4:78140311-78140330 None:intergenic 40.0%
AAACGGAAGCTGAATCTTGA+TGG + chr3_4:78140349-78140368 Msa0524670:intron 40.0%
AGAAATCGCACCAATTTGGA+CGG + chr3_4:78140631-78140650 Msa0524670:intron 40.0%
! ACGGAGAATCCATCGAATTT+TGG + chr3_4:78140650-78140669 Msa0524670:intron 40.0%
TCGATTGAAGGAGAAGAAAC+CGG + chr3_4:78140674-78140693 Msa0524670:intron 40.0%
CGAAGCTGAAGAATCAAGAA+TGG + chr3_4:78140736-78140755 Msa0524670:intron 40.0%
ACCAATATCTGAATCGGAAG+CGG + chr3_4:78140793-78140812 Msa0524670:intron 40.0%
! GGATTCTCTGATTCGTAACA+TGG - chr3_4:78139329-78139348 None:intergenic 40.0%
TTACGAATCAGAGAATCCCA+AGG + chr3_4:78139331-78139350 Msa0524670:intron 40.0%
GATTCTCCTATGAGTCTCTA+TGG - chr3_4:78139415-78139434 None:intergenic 40.0%
AGCAAGCTATCTAGATAGCT+TGG - chr3_4:78139534-78139553 None:intergenic 40.0%
! GACAGCTCTTATGGATTGTA+TGG - chr3_4:78141561-78141580 None:intergenic 40.0%
AGAGCTGTCTGAATGAAATG+AGG + chr3_4:78141572-78141591 Msa0524670:CDS 40.0%
GAGCTGTCTGAATGAAATGA+GGG + chr3_4:78141573-78141592 Msa0524670:CDS 40.0%
! CAAACTGACTTTGAGCACAA+AGG - chr3_4:78141710-78141729 None:intergenic 40.0%
CAAATTGGGTCTCTTTGGAT+TGG - chr3_4:78141998-78142017 None:intergenic 40.0%
TGGATCCTTTGCAATGATTG+CGG + chr3_4:78142208-78142227 Msa0524670:CDS 40.0%
! TTTTGCCGCAATCATTGCAA+AGG - chr3_4:78142216-78142235 None:intergenic 40.0%
TTTGTGCGACAAGATGAAAC+TGG - chr3_4:78142249-78142268 None:intergenic 40.0%
TCAATGCAACCGATGCAAAT+GGG - chr3_4:78142393-78142412 None:intergenic 40.0%
TTCAATGCAACCGATGCAAA+TGG - chr3_4:78142394-78142413 None:intergenic 40.0%
! ATGGAAATGCATGAGTTGAG+CGG + chr3_4:78142418-78142437 Msa0524670:three_prime_UTR 40.0%
GTAAACAATAGAGCACAAGG+GGG - chr3_4:78142512-78142531 None:intergenic 40.0%
CGTAAACAATAGAGCACAAG+GGG - chr3_4:78142513-78142532 None:intergenic 40.0%
! AGTTTATGAAAGTGGTGGGG+TGG + chr3_4:78136832-78136851 Msa0524670:five_prime_UTR 45.0%
! GTTTATGAAAGTGGTGGGGT+GGG + chr3_4:78136833-78136852 Msa0524670:five_prime_UTR 45.0%
! TTTATGAAAGTGGTGGGGTG+GGG + chr3_4:78136834-78136853 Msa0524670:five_prime_UTR 45.0%
GAAGGATGGATGGATCAAAG+AGG - chr3_4:78136893-78136912 None:intergenic 45.0%
CCCAGCAGACAAAACAAAGA+AGG - chr3_4:78136911-78136930 None:intergenic 45.0%
!!! TTTGTTTTGTCTGCTGGGTC+AGG + chr3_4:78136913-78136932 Msa0524670:five_prime_UTR 45.0%
!! TTGTTTTGTCTGCTGGGTCA+GGG + chr3_4:78136914-78136933 Msa0524670:five_prime_UTR 45.0%
ATATGAGAGGAGAGAATGGC+CGG - chr3_4:78136969-78136988 None:intergenic 45.0%
GAGGATATGAGAGGAGAGAA+TGG - chr3_4:78136973-78136992 None:intergenic 45.0%
ACAACGAACCTTAGAGTTGG+AGG - chr3_4:78136992-78137011 None:intergenic 45.0%
GGAACAACGAACCTTAGAGT+TGG - chr3_4:78136995-78137014 None:intergenic 45.0%
GCACTCAAATTGAAGAGGCT+CGG - chr3_4:78137934-78137953 None:intergenic 45.0%
! ATCAATGACTTGCGAGAGAG+AGG + chr3_4:78138056-78138075 Msa0524670:CDS 45.0%
CTTGCGAGAGAGAGGATATA+TGG + chr3_4:78138064-78138083 Msa0524670:CDS 45.0%
GATGTCAACATTACCGGAGA+AGG + chr3_4:78138177-78138196 Msa0524670:intron 45.0%
TTGTCGCCATTGTCACAATG+AGG + chr3_4:78138238-78138257 Msa0524670:CDS 45.0%
ATACCTGTTTGACCTGATGG+CGG - chr3_4:78138647-78138666 None:intergenic 45.0%
ACTCTGTGAGACTGAACAAG+AGG + chr3_4:78138783-78138802 Msa0524670:CDS 45.0%
CCTGGAAGCAGAAGATATCA+AGG - chr3_4:78139025-78139044 None:intergenic 45.0%
CCTTGATATCTTCTGCTTCC+AGG + chr3_4:78139022-78139041 Msa0524670:intron 45.0%
TGATACAGTTCTGCTGAACC+TGG - chr3_4:78139043-78139062 None:intergenic 45.0%
TATCAATTGCGGTGTGTGCA+TGG + chr3_4:78139058-78139077 Msa0524670:CDS 45.0%
ATCAATTGCGGTGTGTGCAT+GGG + chr3_4:78139059-78139078 Msa0524670:CDS 45.0%
AGTCCCCCTCAAACTCAAAA+TGG + chr3_4:78139584-78139603 Msa0524670:intron 45.0%
GTCCCCCTCAAACTCAAAAT+GGG + chr3_4:78139585-78139604 Msa0524670:intron 45.0%
CTGATTCCCATCAGAACATG+TGG - chr3_4:78139740-78139759 None:intergenic 45.0%
! AAGGCTGGTTGCAAAGCTTA+AGG - chr3_4:78139795-78139814 None:intergenic 45.0%
! GCACTTTTGCAACAAAAGGC+TGG - chr3_4:78139810-78139829 None:intergenic 45.0%
AAATTCGTTTCCGGTTGTGG+TGG - chr3_4:78140238-78140257 None:intergenic 45.0%
GTCAAATTCGTTTCCGGTTG+TGG - chr3_4:78140241-78140260 None:intergenic 45.0%
ATCATCAATTTCGATCCCGG+AGG - chr3_4:78140308-78140327 None:intergenic 45.0%
! CCGGGATCGAAATTGATGAT+TGG + chr3_4:78140308-78140327 Msa0524670:intron 45.0%
! TTTTCCGACGAACAACCACA+AGG + chr3_4:78140394-78140413 Msa0524670:intron 45.0%
! ACAGTGCTACTCATTCTCAC+CGG + chr3_4:78140446-78140465 Msa0524670:intron 45.0%
GAGTCGTGATTCTTCAATGC+TGG + chr3_4:78140515-78140534 Msa0524670:intron 45.0%
CTTCACGTAACCGTCTTCTT+CGG + chr3_4:78140547-78140566 Msa0524670:intron 45.0%
TTCGTTGCTTCCGAAGAAGA+CGG - chr3_4:78140560-78140579 None:intergenic 45.0%
GGAAGCAACGAACACAGAAT+CGG + chr3_4:78140568-78140587 Msa0524670:intron 45.0%
CGCAAGAAATCGCACCAATT+TGG + chr3_4:78140627-78140646 Msa0524670:intron 45.0%
! GATGGATTCTCCGTCCAAAT+TGG - chr3_4:78140644-78140663 None:intergenic 45.0%
GGAGAAGAAACCGGAACAAT+CGG + chr3_4:78140683-78140702 Msa0524670:intron 45.0%
TTGATTCTTCAGCTTCGCAC+AGG - chr3_4:78140733-78140752 None:intergenic 45.0%
TCCGCTTCCGATTCAGATAT+TGG - chr3_4:78140797-78140816 None:intergenic 45.0%
TTCTTCCACTGCTACAAGTG+TGG + chr3_4:78141205-78141224 Msa0524670:CDS 45.0%
ACTTACCACACTTGTAGCAG+TGG - chr3_4:78141213-78141232 None:intergenic 45.0%
ACATAGTTGTATGGCCACGA+TGG - chr3_4:78142128-78142147 None:intergenic 45.0%
ATGCACTCTCTTGACAGGTT+TGG + chr3_4:78142188-78142207 Msa0524670:intron 45.0%
TAGTGGCTACCCATTTGCAT+CGG + chr3_4:78142381-78142400 Msa0524670:three_prime_UTR 45.0%
! TGGAAATGCATGAGTTGAGC+GGG + chr3_4:78142419-78142438 Msa0524670:three_prime_UTR 45.0%
!! TTCATTGTGCTTGCTGTTGC+AGG + chr3_4:78142464-78142483 Msa0524670:three_prime_UTR 45.0%
TTTGGCATGGGAAAATCTGC+TGG + chr3_4:78142738-78142757 Msa0524670:three_prime_UTR 45.0%
!!! AAAATAACTTTTTTTTTTTA+AGG - chr3_4:78137424-78137443 None:intergenic 5.0%
GCAGTAAATGCTTGCGTGTC+AGG - chr3_4:78136749-78136768 None:intergenic 50.0%
! TTATGAAAGTGGTGGGGTGG+GGG + chr3_4:78136835-78136854 Msa0524670:five_prime_UTR 50.0%
! TGTTTTGTCTGCTGGGTCAG+GGG + chr3_4:78136915-78136934 Msa0524670:five_prime_UTR 50.0%
! AGAATGGCCGGTCTTGTGTT+CGG - chr3_4:78136957-78136976 None:intergenic 50.0%
AGTGAGCATCATGGGAGAAG+TGG + chr3_4:78137896-78137915 Msa0524670:exon 50.0%
!! ACCGGAGAAGGTGTCGTATT+AGG + chr3_4:78138189-78138208 Msa0524670:CDS 50.0%
CCCTAATACGACACCTTCTC+CGG - chr3_4:78138193-78138212 None:intergenic 50.0%
!! CCGGAGAAGGTGTCGTATTA+GGG + chr3_4:78138190-78138209 Msa0524670:CDS 50.0%
TACCTGTTTGACCTGATGGC+GGG - chr3_4:78138646-78138665 None:intergenic 50.0%
AAGCAGCAGTACCATTGCAG+TGG + chr3_4:78139128-78139147 Msa0524670:CDS 50.0%
CAGTACCATTGCAGTGGTTG+TGG + chr3_4:78139134-78139153 Msa0524670:CDS 50.0%
GCAGTGGTTGTGGAATTTGC+AGG + chr3_4:78139144-78139163 Msa0524670:CDS 50.0%
TCACTGACAGCGAACGTGTT+TGG - chr3_4:78140037-78140056 None:intergenic 50.0%
ACTTTCTTGCCTCGATCCCA+TGG + chr3_4:78140209-78140228 Msa0524670:intron 50.0%
GAACGAACCTGTTCTTCCTC+CGG + chr3_4:78140289-78140308 Msa0524670:intron 50.0%
AACGAACCTGTTCTTCCTCC+GGG + chr3_4:78140290-78140309 Msa0524670:intron 50.0%
TGTGCCTTGTGGTTGTTCGT+CGG - chr3_4:78140401-78140420 None:intergenic 50.0%
ACGAACAACCACAAGGCACA+AGG + chr3_4:78140401-78140420 Msa0524670:intron 50.0%
AGAGCTCATCGCAGCTTTAC+CGG - chr3_4:78140468-78140487 None:intergenic 50.0%
CGAAGAAGACGGTTACGTGA+AGG - chr3_4:78140549-78140568 None:intergenic 50.0%
! GCTTCGCACAGGTTCGTTTT+CGG - chr3_4:78140722-78140741 None:intergenic 50.0%
TGGTATCAGAGCGATACCCT+AGG - chr3_4:78140841-78140860 None:intergenic 50.0%
GAAAAACGGTCACCCTTGTG+TGG + chr3_4:78141353-78141372 Msa0524670:CDS 50.0%
GCATTGCTCCTTCCACACAA+GGG - chr3_4:78141368-78141387 None:intergenic 50.0%
TGCATTGCTCCTTCCACACA+AGG - chr3_4:78141369-78141388 None:intergenic 50.0%
GATGTCTCCGTGTTGCATTG+CGG + chr3_4:78141535-78141554 Msa0524670:CDS 50.0%
TGTATGGCCGCAATGCAACA+CGG - chr3_4:78141545-78141564 None:intergenic 50.0%
!! TTGTGCTTGCTGTTGCAGGT+TGG + chr3_4:78142468-78142487 Msa0524670:three_prime_UTR 50.0%
!! TGTGCTTGCTGTTGCAGGTT+GGG + chr3_4:78142469-78142488 Msa0524670:three_prime_UTR 50.0%
! TGGGTCAGGGGAGCTCTAAT+CGG + chr3_4:78136927-78136946 Msa0524670:five_prime_UTR 55.0%
! ACCTGTTTGACCTGATGGCG+GGG - chr3_4:78138645-78138664 None:intergenic 55.0%
CCATCAGAACATGTGGGCCT+GGG - chr3_4:78139733-78139752 None:intergenic 55.0%
CCAGGCCCACATGTTCTGAT+GGG + chr3_4:78139731-78139750 Msa0524670:intron 55.0%
! TGGTGGATACCATGGGATCG+AGG - chr3_4:78140221-78140240 None:intergenic 55.0%
!! CCGGTTGTGGTGGATACCAT+GGG - chr3_4:78140228-78140247 None:intergenic 55.0%
CCCATGGTATCCACCACAAC+CGG + chr3_4:78140225-78140244 Msa0524670:intron 55.0%
!! TCCGGTTGTGGTGGATACCA+TGG - chr3_4:78140229-78140248 None:intergenic 55.0%
TTCGATCCCGGAGGAAGAAC+AGG - chr3_4:78140299-78140318 None:intergenic 55.0%
CCACAAGGCACAAGGTTTCG+CGG + chr3_4:78140409-78140428 Msa0524670:intron 55.0%
AACGGTCACCCTTGTGTGGA+AGG + chr3_4:78141357-78141376 Msa0524670:CDS 55.0%
!! GTGCTTGCTGTTGCAGGTTG+GGG + chr3_4:78142470-78142489 Msa0524670:three_prime_UTR 55.0%
! TGCAGGTTGGGGCAACTAGT+TGG + chr3_4:78142481-78142500 Msa0524670:three_prime_UTR 55.0%
CGGAGCTCCGAACACAAGAC+CGG + chr3_4:78136947-78136966 Msa0524670:five_prime_UTR 60.0%
ACACGACATTCCCCGCCATC+AGG + chr3_4:78138632-78138651 Msa0524670:CDS 60.0%
TCCCCGCCATCAGGTCAAAC+AGG + chr3_4:78138641-78138660 Msa0524670:CDS 60.0%
CCCAGGCCCACATGTTCTGA+TGG + chr3_4:78139730-78139749 Msa0524670:intron 60.0%
CCCATCAGAACATGTGGGCC+TGG - chr3_4:78139734-78139753 None:intergenic 60.0%
CCGCGAAACCTTGTGCCTTG+TGG - chr3_4:78140412-78140431 None:intergenic 60.0%
CAAGGCACAAGGTTTCGCGG+CGG + chr3_4:78140412-78140431 Msa0524670:intron 60.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 78136746 78142786 78136746 ID=Msa0524670;Name=Msa0524670
chr3_4 mRNA 78136746 78142786 78136746 ID=Msa0524670-mRNA-1;Parent=Msa0524670;Name=Msa0524670-mRNA-1;_AED=0.09;_eAED=0.09;_QI=319|0.9|0.90|1|0.8|0.72|11|471|287
chr3_4 exon 78136746 78137002 78136746 ID=Msa0524670-mRNA-1:exon:23075;Parent=Msa0524670-mRNA-1
chr3_4 exon 78137844 78138093 78137844 ID=Msa0524670-mRNA-1:exon:23076;Parent=Msa0524670-mRNA-1
chr3_4 exon 78138178 78138265 78138178 ID=Msa0524670-mRNA-1:exon:23077;Parent=Msa0524670-mRNA-1
chr3_4 exon 78138603 78138662 78138603 ID=Msa0524670-mRNA-1:exon:23078;Parent=Msa0524670-mRNA-1
chr3_4 exon 78138772 78138804 78138772 ID=Msa0524670-mRNA-1:exon:23079;Parent=Msa0524670-mRNA-1
chr3_4 exon 78139044 78139165 78139044 ID=Msa0524670-mRNA-1:exon:23080;Parent=Msa0524670-mRNA-1
chr3_4 exon 78141186 78141226 78141186 ID=Msa0524670-mRNA-1:exon:23081;Parent=Msa0524670-mRNA-1
chr3_4 exon 78141331 78141413 78141331 ID=Msa0524670-mRNA-1:exon:23082;Parent=Msa0524670-mRNA-1
chr3_4 exon 78141514 78141605 78141514 ID=Msa0524670-mRNA-1:exon:23083;Parent=Msa0524670-mRNA-1
chr3_4 exon 78141697 78141742 78141697 ID=Msa0524670-mRNA-1:exon:23084;Parent=Msa0524670-mRNA-1
chr3_4 exon 78142205 78142786 78142205 ID=Msa0524670-mRNA-1:exon:23085;Parent=Msa0524670-mRNA-1
chr3_4 five_prime_UTR 78136746 78137002 78136746 ID=Msa0524670-mRNA-1:five_prime_utr;Parent=Msa0524670-mRNA-1
chr3_4 five_prime_UTR 78137844 78137905 78137844 ID=Msa0524670-mRNA-1:five_prime_utr;Parent=Msa0524670-mRNA-1
chr3_4 CDS 78137906 78138093 78137906 ID=Msa0524670-mRNA-1:cds;Parent=Msa0524670-mRNA-1
chr3_4 CDS 78138178 78138265 78138178 ID=Msa0524670-mRNA-1:cds;Parent=Msa0524670-mRNA-1
chr3_4 CDS 78138603 78138662 78138603 ID=Msa0524670-mRNA-1:cds;Parent=Msa0524670-mRNA-1
chr3_4 CDS 78138772 78138804 78138772 ID=Msa0524670-mRNA-1:cds;Parent=Msa0524670-mRNA-1
chr3_4 CDS 78139044 78139165 78139044 ID=Msa0524670-mRNA-1:cds;Parent=Msa0524670-mRNA-1
chr3_4 CDS 78141186 78141226 78141186 ID=Msa0524670-mRNA-1:cds;Parent=Msa0524670-mRNA-1
chr3_4 CDS 78141331 78141413 78141331 ID=Msa0524670-mRNA-1:cds;Parent=Msa0524670-mRNA-1
chr3_4 CDS 78141514 78141605 78141514 ID=Msa0524670-mRNA-1:cds;Parent=Msa0524670-mRNA-1
chr3_4 CDS 78141697 78141742 78141697 ID=Msa0524670-mRNA-1:cds;Parent=Msa0524670-mRNA-1
chr3_4 CDS 78142205 78142315 78142205 ID=Msa0524670-mRNA-1:cds;Parent=Msa0524670-mRNA-1
chr3_4 three_prime_UTR 78142316 78142786 78142316 ID=Msa0524670-mRNA-1:three_prime_utr;Parent=Msa0524670-mRNA-1
Gene Sequence

>Msa0524670

ATGGGAGAAGTGGCAGTAATGCACTCCGAGCCTCTTCAATTTGAGTGCAATGACAGGAATCTTATCACGGAGAAAGATGTGCATAATCTACCCTCAAATGAAGAGCACATGCATGGCGAAAAGTCTAGCCAATCACCAGACCACAAAAAGATCAATGACTTGCGAGAGAGAGGATATATGGAGTATGGATGTCAACATTACCGGAGAAGGTGTCGTATTAGGGCCCCTTGTTGCAATGAGATATTTGATTGTCGCCATTGTCACAATGAGGCAAAAAACAGCATCGACGTCAATCAGAAGCATAGACACGACATTCCCCGCCATCAGGTCAAACAGGTGATATGTTCACTCTGTGAGACTGAACAAGAGGTTCAGCAGAACTGTATCAATTGCGGTGTGTGCATGGGCAATTATTTTTGCGGGACATGTAAGCTCTTTGATGATGATGTATCTAAGCAGCAGTACCATTGCAGTGGTTGTGGAATTTGCAGAACTGGAGGGTCTGAAAATTTCTTCCACTGCTACAAGTGTGGTTGTTGCTACTCAACTTTGTTGAAAAACGGTCACCCTTGTGTGGAAGGAGCAATGCATCAAGATTGTCCTGTTTGTTTTGAGTATTTGTTTGAATCTGTCAACGATGTCTCCGTGTTGCATTGCGGCCATACAATCCATAAGAGCTGTCTGAATGAAATGAGGGAACATTTTCAGTATGCATGCCCTTTGTGCTCAAAGTCAGTTTGTGATATGTCAAAGGTTTGGATCCTTTGCAATGATTGCGGCAAAAATTCTCATGTCCAGTTTCATCTTGTCGCACAAAAGTGCTTGAACTGCAAATCTTATAACACAAGACAAATAAGAGGCTGA

Protein sequence

>Msa0524670

MGEVAVMHSEPLQFECNDRNLITEKDVHNLPSNEEHMHGEKSSQSPDHKKINDLRERGYMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAKNSIDVNQKHRHDIPRHQVKQVICSLCETEQEVQQNCINCGVCMGNYFCGTCKLFDDDVSKQQYHCSGCGICRTGGSENFFHCYKCGCCYSTLLKNGHPCVEGAMHQDCPVCFEYLFESVNDVSVLHCGHTIHKSCLNEMREHFQYACPLCSKSVCDMSKVWILCNDCGKNSHVQFHLVAQKCLNCKSYNTRQIRG*