AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0433050


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0433050 MtrunA17_Chr3g0138621 97.087 309 9 0 1 309 1 309 0.0 624
Msa0433050 MtrunA17_Chr1g0148421 78.964 309 58 1 1 309 1 302 0.0 512
Msa0433050 MtrunA17_Chr1g0169881 72.168 309 78 2 1 309 1 301 4.36e-168 468
Msa0433050 MtrunA17_Chr7g0264931 70.866 254 74 0 56 309 16 269 3.04e-139 394
Msa0433050 MtrunA17_Chr4g0028121 71.255 247 71 0 62 308 58 304 4.04e-137 390
Msa0433050 MtrunA17_Chr2g0286331 58.400 250 103 1 58 307 12 260 1.07e-108 317
Msa0433050 MtrunA17_Chr8g0391161 34.680 297 165 8 27 308 953 1235 5.10e-51 181
Msa0433050 MtrunA17_Chr6g0484171 39.764 254 134 8 62 309 986 1226 4.49e-50 178
Msa0433050 MtrunA17_Chr4g0059881 36.268 284 153 8 29 307 1011 1271 5.23e-50 178
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0433050 AT5G25560.1 69.132 311 91 3 1 309 1 308 1.19e-154 435
Msa0433050 AT5G25560.5 69.132 311 91 3 1 309 1 308 1.19e-154 435
Msa0433050 AT5G25560.6 69.132 311 91 3 1 309 1 308 1.19e-154 435
Msa0433050 AT5G25560.2 69.132 311 91 3 1 309 1 308 1.19e-154 435
Msa0433050 AT5G25560.3 66.978 321 91 4 1 309 1 318 1.35e-151 427
Msa0433050 AT5G25560.4 67.846 311 90 4 1 309 1 303 5.77e-149 420
Msa0433050 AT5G22920.1 65.283 265 92 0 44 308 7 271 1.93e-134 383
Msa0433050 AT5G22920.2 64.935 231 81 0 44 274 7 237 8.37e-115 331
Msa0433050 AT5G18650.1 57.812 256 107 1 52 307 6 260 1.24e-110 322
Msa0433050 AT3G62970.1 54.545 253 113 2 55 307 26 276 9.79e-102 300
Msa0433050 AT3G62970.2 54.884 215 96 1 55 269 26 239 1.60e-88 265
Msa0433050 AT3G62970.3 54.854 206 92 1 55 260 26 230 5.57e-84 253
Msa0433050 AT1G74770.1 38.732 284 145 8 29 307 1000 1259 3.18e-56 196
Msa0433050 AT1G18910.1 39.858 281 140 8 30 305 996 1252 1.55e-54 191
Msa0433050 AT3G18290.1 39.370 254 134 7 62 309 1004 1243 1.58e-51 182
Msa0433050 AT1G74770.2 38.496 226 110 8 29 249 1000 1201 9.49e-41 151

Find 112 sgRNAs with CRISPR-Local

Find 338 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTTTGGATAGTTGTATTT+TGG 0.158519 3_2:+85369060 Msa0433050:three_prime_UTR
GAGAGAGGATATATGGAGTA+TGG 0.207183 3_2:+85364411 Msa0433050:CDS
CTTAATGGCAATTGAAAATT+AGG 0.207437 3_2:+85368941 Msa0433050:three_prime_UTR
ATGAACACATAGTCCCTTAA+TGG 0.231913 3_2:+85368926 Msa0433050:three_prime_UTR
TTCATTGTGCTTGCTGTTGC+AGG 0.244907 3_2:+85368804 Msa0433050:three_prime_UTR
ACCGGAGAAGGTGTCGTATT+AGG 0.258966 3_2:+85364529 Msa0433050:CDS
TTTCATTCAGACAGCTCTTA+TGG 0.265918 3_2:-85367907 None:intergenic
TGAACCATATCTTAATAAAA+TGG 0.283237 3_2:+85368127 Msa0433050:CDS
GCAGTAAATGCTTGCGTGTC+AGG 0.294400 3_2:-85363086 None:intergenic
TGTGCTTGCTGTTGCAGGTT+GGG 0.316056 3_2:+85368809 Msa0433050:three_prime_UTR
TTGTGATATGTCAAAGGTTT+GGG 0.324215 3_2:+85368067 Msa0433050:CDS
CCGGAGAAGGTGTCGTATTA+GGG 0.346547 3_2:+85364530 Msa0433050:CDS
TCTGTAGATGTCAACATTAC+CGG 0.349957 3_2:+85364511 Msa0433050:intron
TTTATGAAAGTGGTGGGGTG+GGG 0.353360 3_2:+85363174 Msa0433050:five_prime_UTR
CTTGCGAGAGAGAGGATATA+TGG 0.362778 3_2:+85364404 Msa0433050:CDS
TTTACGTTGTAATGTTTGTA+TGG 0.366566 3_2:+85368867 Msa0433050:three_prime_UTR
TCTCATATCCTCCAACTCTA+AGG 0.368205 3_2:+85363321 Msa0433050:five_prime_UTR
ATGCATGTGCTCTTCATTTG+AGG 0.389882 3_2:-85364337 None:intergenic
CAAAAGCACTGTTTCAAAAC+AGG 0.403494 3_2:-85363115 None:intergenic
TTTGTGATATGTCAAAGGTT+TGG 0.406110 3_2:+85368066 Msa0433050:CDS
AGTGCAAGCTATCTAGAAAC+AGG 0.408470 3_2:-85364200 None:intergenic
GCAGTGGTTGTGGAATTTGC+AGG 0.412763 3_2:+85365484 Msa0433050:CDS
GTGCTTGCTGTTGCAGGTTG+GGG 0.422852 3_2:+85368810 Msa0433050:three_prime_UTR
CTCCATTCTTATGAAGATAG+TGG 0.424980 3_2:+85368704 Msa0433050:three_prime_UTR
GACAGCTCTTATGGATTGTA+TGG 0.427608 3_2:-85367898 None:intergenic
TTCAATGCAACCGATGCAAA+TGG 0.428670 3_2:-85368731 None:intergenic
GTTTATGAAAGTGGTGGGGT+GGG 0.434200 3_2:+85363173 Msa0433050:five_prime_UTR
TGCATGTGCTCTTCATTTGA+GGG 0.437426 3_2:-85364336 None:intergenic
TGCAGGTTGGGGCAACTAGT+TGG 0.440988 3_2:+85368821 Msa0433050:three_prime_UTR
CAGTACCATTGCAGTGGTTG+TGG 0.446831 3_2:+85365474 Msa0433050:CDS
TCCCCGCCATCAGGTCAAAC+AGG 0.452846 3_2:+85364981 Msa0433050:CDS
TTATGAAAGTGGTGGGGTGG+GGG 0.458323 3_2:+85363175 Msa0433050:five_prime_UTR
TTTGTGCGACAAGATGAAAC+TGG 0.460355 3_2:-85368586 None:intergenic
AGCCACTATCTTCATAAGAA+TGG 0.471867 3_2:-85368706 None:intergenic
AGAATGGCCGGTCTTGTGTT+CGG 0.477658 3_2:-85363294 None:intergenic
ATTGTTACCTCAAAACAAAC+AGG 0.479044 3_2:-85367739 None:intergenic
TTCAATTTGAGTGCAATGAC+AGG 0.480009 3_2:+85364280 Msa0433050:CDS
TTTGGCATGGGAAAATCTGC+TGG 0.481627 3_2:+85369078 Msa0433050:three_prime_UTR
TTAAGATATGGTTCAGGCAT+CGG 0.481734 3_2:-85368119 None:intergenic
CGTAAACAATAGAGCACAAG+GGG 0.484768 3_2:-85368850 None:intergenic
TATAACACAAGACAAATAAG+AGG 0.485710 3_2:+85368629 Msa0433050:CDS
AAACTGACTTTGAGCACAAA+GGG 0.486545 3_2:-85368046 None:intergenic
AGAGAGGATATATGGAGTAT+GGG 0.487300 3_2:+85364412 Msa0433050:CDS
TGGGTCAGGGGAGCTCTAAT+CGG 0.489772 3_2:+85363267 Msa0433050:five_prime_UTR
GGATCAAAGAGGAATGAGAA+TGG 0.489861 3_2:-85363219 None:intergenic
TACCTGTTTGACCTGATGGC+GGG 0.493489 3_2:-85364983 None:intergenic
TTACTAGTAGTTTATGAAAG+TGG 0.500648 3_2:+85363164 Msa0433050:five_prime_UTR
TATCAATTGCGGTGTGTGCA+TGG 0.500787 3_2:+85365398 Msa0433050:CDS
TAGTAGTTTATGAAAGTGGT+GGG 0.507761 3_2:+85363168 Msa0433050:five_prime_UTR
CCCTAATACGACACCTTCTC+CGG 0.508236 3_2:-85364530 None:intergenic
AACATACCTGTTTGACCTGA+TGG 0.508780 3_2:-85364987 None:intergenic
GTCAGTTTGTGATATGTCAA+AGG 0.511690 3_2:+85368061 Msa0433050:CDS
ACACGACATTCCCCGCCATC+AGG 0.513051 3_2:+85364972 Msa0433050:CDS
TTGTGCTTGCTGTTGCAGGT+TGG 0.513938 3_2:+85368808 Msa0433050:three_prime_UTR
GTTTATACATGCAGGTCACT+AGG 0.515281 3_2:+85364170 Msa0433050:intron
CTGAAAATAGTGAGCATCAT+GGG 0.515352 3_2:+85364228 Msa0433050:exon
AAATAAGAATAAAAGCACTT+TGG 0.517518 3_2:+85369045 Msa0433050:three_prime_UTR
AACGGTCACCCTTGTGTGGA+AGG 0.518944 3_2:+85367697 Msa0433050:CDS
TGCATTGCTCCTTCCACACA+AGG 0.524587 3_2:-85367706 None:intergenic
GAGGATATGAGAGGAGAGAA+TGG 0.527699 3_2:-85363310 None:intergenic
AGTTTATGAAAGTGGTGGGG+TGG 0.528004 3_2:+85363172 Msa0433050:five_prime_UTR
GATGTCAACATTACCGGAGA+AGG 0.534230 3_2:+85364517 Msa0433050:intron
GATCAAAGAGGAATGAGAAT+GGG 0.534348 3_2:-85363218 None:intergenic
ATCGGTTGCATTGAATATGA+TGG 0.538810 3_2:+85368739 Msa0433050:three_prime_UTR
TCAATGCAACCGATGCAAAT+GGG 0.542694 3_2:-85368730 None:intergenic
CTAGTAGTTTATGAAAGTGG+TGG 0.544149 3_2:+85363167 Msa0433050:five_prime_UTR
AGAGCTGTCTGAATGAAATG+AGG 0.554066 3_2:+85367912 Msa0433050:CDS
CCCAGCAGACAAAACAAAGA+AGG 0.556816 3_2:-85363248 None:intergenic
TCAAATATCTCATTGCAACA+AGG 0.556883 3_2:-85364555 None:intergenic
TTACGTTGTAATGTTTGTAT+GGG 0.557569 3_2:+85368868 Msa0433050:three_prime_UTR
ATCAATGACTTGCGAGAGAG+AGG 0.557776 3_2:+85364396 Msa0433050:CDS
ACCTGTTTGACCTGATGGCG+GGG 0.562153 3_2:-85364982 None:intergenic
GCACTCAAATTGAAGAGGCT+CGG 0.562219 3_2:-85364271 None:intergenic
CAGTAAATGCTTGCGTGTCA+GGG 0.562298 3_2:-85363085 None:intergenic
TGGATCCTTTGCAATGATTG+CGG 0.563350 3_2:+85368548 Msa0433050:CDS
TCTGAAAATAGTGAGCATCA+TGG 0.568624 3_2:+85364227 Msa0433050:exon
ACAAAACAAAGAAGGATGGA+TGG 0.570330 3_2:-85363240 None:intergenic
AGTGAGCATCATGGGAGAAG+TGG 0.570618 3_2:+85364236 Msa0433050:exon
ATCAATTGCGGTGTGTGCAT+GGG 0.579084 3_2:+85365399 Msa0433050:CDS
ATATGAGAGGAGAGAATGGC+CGG 0.583600 3_2:-85363306 None:intergenic
ACAACGAACCTTAGAGTTGG+AGG 0.583681 3_2:-85363329 None:intergenic
GCAGACAAAACAAAGAAGGA+TGG 0.587703 3_2:-85363244 None:intergenic
CGGAGCTCCGAACACAAGAC+CGG 0.589759 3_2:+85363287 Msa0433050:five_prime_UTR
TCATTGCACTCAAATTGAAG+AGG 0.591774 3_2:-85364276 None:intergenic
TGGAAATGCATGAGTTGAGC+GGG 0.593340 3_2:+85368759 Msa0433050:three_prime_UTR
CAAATATCTCATTGCAACAA+GGG 0.593446 3_2:-85364554 None:intergenic
GAGCTGTCTGAATGAAATGA+GGG 0.595369 3_2:+85367913 Msa0433050:CDS
GGAACAACGAACCTTAGAGT+TGG 0.597252 3_2:-85363332 None:intergenic
AAATTCCACAACCACTGCAA+TGG 0.598547 3_2:-85365479 None:intergenic
CAAACTGACTTTGAGCACAA+AGG 0.599345 3_2:-85368047 None:intergenic
TTCTTCCACTGCTACAAGTG+TGG 0.601466 3_2:+85367545 Msa0433050:CDS
TCAAATGAAGAGCACATGCA+TGG 0.607616 3_2:+85364339 Msa0433050:CDS
AACGTAAACAATAGAGCACA+AGG 0.608424 3_2:-85368852 None:intergenic
ACTTACCACACTTGTAGCAG+TGG 0.608628 3_2:-85367550 None:intergenic
AAATATCTCATTGCAACAAG+GGG 0.613018 3_2:-85364553 None:intergenic
ACTCTGTGAGACTGAACAAG+AGG 0.613028 3_2:+85365123 Msa0433050:CDS
TAGTGGCTACCCATTTGCAT+CGG 0.618494 3_2:+85368721 Msa0433050:three_prime_UTR
TTGTCGCCATTGTCACAATG+AGG 0.627282 3_2:+85364578 Msa0433050:CDS
AGTAGTTTATGAAAGTGGTG+GGG 0.630647 3_2:+85363169 Msa0433050:five_prime_UTR
ATACCTGTTTGACCTGATGG+CGG 0.637436 3_2:-85364984 None:intergenic
CAGCAGAACTGTATCAATTG+CGG 0.643368 3_2:+85365387 Msa0433050:CDS
ATTAGGCTGTAATAAACGTG+TGG 0.647002 3_2:+85368958 Msa0433050:three_prime_UTR
TTAGAGTTGGAGGATATGAG+AGG 0.650901 3_2:-85363319 None:intergenic
CAATGACAGGAATCTTATCA+CGG 0.652971 3_2:+85364293 Msa0433050:CDS
AAGCAGCAGTACCATTGCAG+TGG 0.661184 3_2:+85365468 Msa0433050:CDS
GAAGGATGGATGGATCAAAG+AGG 0.670375 3_2:-85363230 None:intergenic
TGTATGGCCGCAATGCAACA+CGG 0.679908 3_2:-85367882 None:intergenic
ACGTAAACAATAGAGCACAA+GGG 0.680213 3_2:-85368851 None:intergenic
ATGGAAATGCATGAGTTGAG+CGG 0.688899 3_2:+85368758 Msa0433050:three_prime_UTR
GCATTGCTCCTTCCACACAA+GGG 0.704197 3_2:-85367705 None:intergenic
GATGTCTCCGTGTTGCATTG+CGG 0.707696 3_2:+85367875 Msa0433050:CDS
GTAAACAATAGAGCACAAGG+GGG 0.858578 3_2:-85368849 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTTTTATATATTTAA+AGG + chr3_2:85363989-85364008 Msa0433050:intron 0.0%
!!! TTTTAATTTCTTTTATAACT+TGG + chr3_2:85363409-85363428 Msa0433050:intron 10.0%
!! ATATAAAATAAAGTCAAATT+GGG - chr3_2:85368352-85368371 None:intergenic 10.0%
!! AATATAAAATAAAGTCAAAT+TGG - chr3_2:85368353-85368372 None:intergenic 10.0%
!!! ATTTGACTTTATTTTATATT+TGG + chr3_2:85368353-85368372 Msa0433050:intron 10.0%
!!! ATTTTTTAATATACAGTTCA+AGG + chr3_2:85363721-85363740 Msa0433050:intron 15.0%
!! TTTGTTTAAGTAATTAAGTA+AGG - chr3_2:85363822-85363841 None:intergenic 15.0%
!!! AAATCATTAATTTTTTACGA+TGG - chr3_2:85364489-85364508 None:intergenic 15.0%
!! TTCTAAATGATATAATGAAA+TGG - chr3_2:85365313-85365332 None:intergenic 15.0%
!! TATTTAAGAATTGAGATCAA+TGG - chr3_2:85363547-85363566 None:intergenic 20.0%
!! AAAATAATCGATAATTGATG+TGG - chr3_2:85363706-85363725 None:intergenic 20.0%
!!! TTATCAAATGCTTTTTCTTT+AGG - chr3_2:85364036-85364055 None:intergenic 20.0%
!!! TGTTATTGCTAAATTGTTTT+CGG + chr3_2:85364131-85364150 Msa0433050:intron 20.0%
!! TACAATATAATCCTCATTTA+TGG - chr3_2:85364693-85364712 None:intergenic 20.0%
!!! ATATTTTCTTTACTATCTCT+TGG + chr3_2:85365153-85365172 Msa0433050:intron 20.0%
!! TGTTATGAAATTACTTATGA+CGG + chr3_2:85365196-85365215 Msa0433050:intron 20.0%
!! TCTCAAAATTAATAACTGTT+TGG - chr3_2:85365246-85365265 None:intergenic 20.0%
!!! TTCATTATATCATTTAGAAC+TGG + chr3_2:85365314-85365333 Msa0433050:intron 20.0%
!!! ATATGTTTTAAAAACAGAAC+TGG + chr3_2:85367509-85367528 Msa0433050:intron 20.0%
!!! TTTGTATTTGATTTTGTATC+AGG + chr3_2:85368015-85368034 Msa0433050:intron 20.0%
!!! ATTTTATTAAGATATGGTTC+AGG - chr3_2:85368128-85368147 None:intergenic 20.0%
!! TGAACCATATCTTAATAAAA+TGG + chr3_2:85368127-85368146 Msa0433050:CDS 20.0%
!!! CTTACCATTTTATTAAGATA+TGG - chr3_2:85368134-85368153 None:intergenic 20.0%
!!! TAATTTTCAATTGCCATTAA+GGG - chr3_2:85368942-85368961 None:intergenic 20.0%
!!! TAGTATTTTTCTTAAGACAT+GGG - chr3_2:85369010-85369029 None:intergenic 20.0%
!!! ATAGTATTTTTCTTAAGACA+TGG - chr3_2:85369011-85369030 None:intergenic 20.0%
!!! AAATAAGAATAAAAGCACTT+TGG + chr3_2:85369045-85369064 Msa0433050:three_prime_UTR 20.0%
! TTACTAGTAGTTTATGAAAG+TGG + chr3_2:85363164-85363183 Msa0433050:five_prime_UTR 25.0%
! TCAAACACAAATAACAAGTA+TGG - chr3_2:85363368-85363387 None:intergenic 25.0%
!! TTATTAGTTTAAGAAACCTG+AGG + chr3_2:85363596-85363615 Msa0433050:intron 25.0%
! AAGTAAAATAAATCTACCTC+AGG - chr3_2:85363615-85363634 None:intergenic 25.0%
!! GTTATTGCTAAATTGTTTTC+GGG + chr3_2:85364132-85364151 Msa0433050:intron 25.0%
! CTAAATATGTTTATACATGC+AGG + chr3_2:85364162-85364181 Msa0433050:intron 25.0%
! GATTGAAAAGCAAATAGTAT+GGG - chr3_2:85364451-85364470 None:intergenic 25.0%
! AGATTGAAAAGCAAATAGTA+TGG - chr3_2:85364452-85364471 None:intergenic 25.0%
!!! TAATTTTTTACGATGGCAAA+GGG - chr3_2:85364482-85364501 None:intergenic 25.0%
!!! TTAATTTTTTACGATGGCAA+AGG - chr3_2:85364483-85364502 None:intergenic 25.0%
! ACTTATGACTTAGAATGAAA+TGG + chr3_2:85364846-85364865 Msa0433050:intron 25.0%
! CAAAATTAATAACTGTTTGG+AGG - chr3_2:85365243-85365262 None:intergenic 25.0%
!!! CAAATTGGTTAGCTTATTAT+CGG - chr3_2:85365516-85365535 None:intergenic 25.0%
! TTTAGCTAACTTAACCAAAT+TGG - chr3_2:85365531-85365550 None:intergenic 25.0%
! TCATTATGACTATTATCCTT+GGG - chr3_2:85365690-85365709 None:intergenic 25.0%
! ATCATTATGACTATTATCCT+TGG - chr3_2:85365691-85365710 None:intergenic 25.0%
! AGGATAATAGTCATAATGAT+CGG + chr3_2:85365691-85365710 Msa0433050:intron 25.0%
! CACAACTAAACTCTATATAT+AGG - chr3_2:85365822-85365841 None:intergenic 25.0%
! ATTGTGTTTCAAACTCAAAT+TGG - chr3_2:85365959-85365978 None:intergenic 25.0%
! ACTGAAGTAACTAAGTAAAA+TGG + chr3_2:85366000-85366019 Msa0433050:intron 25.0%
! CTGAAGTAACTAAGTAAAAT+GGG + chr3_2:85366001-85366020 Msa0433050:intron 25.0%
! TGAAGTAACTAAGTAAAATG+GGG + chr3_2:85366002-85366021 Msa0433050:intron 25.0%
!! AAATAAGCAGCTTTTATGTT+TGG - chr3_2:85366189-85366208 None:intergenic 25.0%
! TCATTATGACTATTATCCTT+GGG - chr3_2:85365690-85365709 None:intergenic 25.0%
! ATCATTATGACTATTATCCT+TGG - chr3_2:85365691-85365710 None:intergenic 25.0%
! AGGATAATAGTCATAATGAT+CGG + chr3_2:85365691-85365710 Msa0433050:intron 25.0%
! CACAACTAAACTCTATATAT+AGG - chr3_2:85365822-85365841 None:intergenic 25.0%
! TACTCAACTTTGTTGAAAAA+CGG + chr3_2:85367679-85367698 Msa0433050:CDS 25.0%
! CATAAATTCAACAAATTGAC+AGG - chr3_2:85367794-85367813 None:intergenic 25.0%
!!! CTGTCAATTTGTTGAATTTA+TGG + chr3_2:85367792-85367811 Msa0433050:intron 25.0%
!!! TCAATTTGTTGAATTTATGG+AGG + chr3_2:85367795-85367814 Msa0433050:intron 25.0%
! ACAAATCACTACAATTGAAA+TGG - chr3_2:85367988-85368007 None:intergenic 25.0%
! CAAAATCAAATACAAAGTTC+AGG - chr3_2:85368011-85368030 None:intergenic 25.0%
! TCAATACAAACAAGTCTAAA+AGG - chr3_2:85368161-85368180 None:intergenic 25.0%
! TATAGAAATAGTCTATACAC+AGG + chr3_2:85368377-85368396 Msa0433050:intron 25.0%
! ATAGAAATAGTCTATACACA+GGG + chr3_2:85368378-85368397 Msa0433050:intron 25.0%
! TATAACACAAGACAAATAAG+AGG + chr3_2:85368629-85368648 Msa0433050:CDS 25.0%
! TTTACGTTGTAATGTTTGTA+TGG + chr3_2:85368867-85368886 Msa0433050:three_prime_UTR 25.0%
! TTACGTTGTAATGTTTGTAT+GGG + chr3_2:85368868-85368887 Msa0433050:three_prime_UTR 25.0%
!! CTAATTTTCAATTGCCATTA+AGG - chr3_2:85368943-85368962 None:intergenic 25.0%
! CTTAATGGCAATTGAAAATT+AGG + chr3_2:85368941-85368960 Msa0433050:three_prime_UTR 25.0%
TAGTAGTTTATGAAAGTGGT+GGG + chr3_2:85363168-85363187 Msa0433050:five_prime_UTR 30.0%
AACAAGTATGGAAGAAAGTA+AGG - chr3_2:85363356-85363375 None:intergenic 30.0%
!! ATTCTTTTGATTCATGTAGC+TGG + chr3_2:85363448-85363467 Msa0433050:intron 30.0%
TAAAACCATGAACATGAACA+TGG - chr3_2:85363642-85363661 None:intergenic 30.0%
! ATGGATTATAGGCAATAAGT+CGG - chr3_2:85363680-85363699 None:intergenic 30.0%
AAATATCTCATTGCAACAAG+GGG - chr3_2:85364556-85364575 None:intergenic 30.0%
CAAATATCTCATTGCAACAA+GGG - chr3_2:85364557-85364576 None:intergenic 30.0%
TCAAATATCTCATTGCAACA+AGG - chr3_2:85364558-85364577 None:intergenic 30.0%
CTGTTCAGATATTTCATGTA+TGG + chr3_2:85364649-85364668 Msa0433050:intron 30.0%
TTCAGATATTTCATGTATGG+TGG + chr3_2:85364652-85364671 Msa0433050:intron 30.0%
TTAAGACTCTCGAATTTCTT+GGG + chr3_2:85364722-85364741 Msa0433050:intron 30.0%
CAAATTTCATAGACAACTTC+AGG + chr3_2:85364807-85364826 Msa0433050:intron 30.0%
AAAATTGCAGATCTTCAATG+AGG - chr3_2:85365027-85365046 None:intergenic 30.0%
!!! CTGTTGTTATTTTTCTGATG+AGG + chr3_2:85365060-85365079 Msa0433050:intron 30.0%
! AATGAATGCTCCAATTTTTC+AGG + chr3_2:85365090-85365109 Msa0433050:intron 30.0%
GAACATATCACCTGAAAAAT+TGG - chr3_2:85365103-85365122 None:intergenic 30.0%
CGATAATAAGCTAACCAATT+TGG + chr3_2:85365514-85365533 Msa0433050:intron 30.0%
GAAAAAGTCATATCAACCTT+GGG - chr3_2:85365584-85365603 None:intergenic 30.0%
AGAAAAAGTCATATCAACCT+TGG - chr3_2:85365585-85365604 None:intergenic 30.0%
!!! TCTTGTTTTTCCTTTTCTCT+TGG + chr3_2:85365604-85365623 Msa0433050:intron 30.0%
GAAGTAACTAAGTAAAATGG+GGG + chr3_2:85366003-85366022 Msa0433050:intron 30.0%
TAAGGAAGAAAAGAAGAAGA+AGG - chr3_2:85366117-85366136 None:intergenic 30.0%
!!! AAAAGCACTTTTGCAACAAA+AGG - chr3_2:85366154-85366173 None:intergenic 30.0%
!!! CTTTTGGAATAAGTTGTTTG+TGG - chr3_2:85366266-85366285 None:intergenic 30.0%
!!! AAAGTGTTTTGATTTCGTTC+AGG - chr3_2:85366332-85366351 None:intergenic 30.0%
TCATCATGTAACTTGAGAAA+CGG + chr3_2:85366672-85366691 Msa0433050:intron 30.0%
ATCTTCACCAATATCTGAAT+CGG + chr3_2:85367127-85367146 Msa0433050:intron 30.0%
!!! AGACTTTAGTGCACTTTTTT+TGG + chr3_2:85367458-85367477 Msa0433050:intron 30.0%
!!! TGTTTTAAAAACAGAACTGG+AGG + chr3_2:85367512-85367531 Msa0433050:intron 30.0%
!!! GTTTTAAAAACAGAACTGGA+GGG + chr3_2:85367513-85367532 Msa0433050:intron 30.0%
AAGAAAAACAGTTATGAAGC+AGG - chr3_2:85367633-85367652 None:intergenic 30.0%
TCTTCATAACTTCTTTGCAT+AGG + chr3_2:85367649-85367668 Msa0433050:intron 30.0%
ATTGTTACCTCAAAACAAAC+AGG - chr3_2:85367742-85367761 None:intergenic 30.0%
GCTTATCTCAGTTTATCTAT+TGG - chr3_2:85368316-85368335 None:intergenic 30.0%
!!! ATTAAGCTGTTTTTCCAAAC+AGG + chr3_2:85368418-85368437 Msa0433050:intron 30.0%
!!! TTAAGCTGTTTTTCCAAACA+GGG + chr3_2:85368419-85368438 Msa0433050:intron 30.0%
AAATAATGATCAACCCTGTT+TGG - chr3_2:85368435-85368454 None:intergenic 30.0%
TCATCATGTACATAGTTGTA+TGG - chr3_2:85368477-85368496 None:intergenic 30.0%
! TTTTTCTTAAGACATGGGAA+CGG - chr3_2:85369005-85369024 None:intergenic 30.0%
! CACTTTGGATAGTTGTATTT+TGG + chr3_2:85369060-85369079 Msa0433050:three_prime_UTR 30.0%
!! CAAAAGCACTGTTTCAAAAC+AGG - chr3_2:85363118-85363137 None:intergenic 35.0%
!!! CTGTTTTGAAACAGTGCTTT+TGG + chr3_2:85363116-85363135 Msa0433050:five_prime_UTR 35.0%
!! TTTGAAACAGTGCTTTTGGA+AGG + chr3_2:85363120-85363139 Msa0433050:five_prime_UTR 35.0%
CTAGTAGTTTATGAAAGTGG+TGG + chr3_2:85363167-85363186 Msa0433050:five_prime_UTR 35.0%
AGTAGTTTATGAAAGTGGTG+GGG + chr3_2:85363169-85363188 Msa0433050:five_prime_UTR 35.0%
GATCAAAGAGGAATGAGAAT+GGG - chr3_2:85363221-85363240 None:intergenic 35.0%
ACAAAACAAAGAAGGATGGA+TGG - chr3_2:85363243-85363262 None:intergenic 35.0%
TACAACCATGTTCATGTTCA+TGG + chr3_2:85363634-85363653 Msa0433050:intron 35.0%
CAATAAGTCGGTGACATATT+TGG - chr3_2:85363668-85363687 None:intergenic 35.0%
! TGATGTGGCATATGGATTAT+AGG - chr3_2:85363691-85363710 None:intergenic 35.0%
TCGATAATTGATGTGGCATA+TGG - chr3_2:85363699-85363718 None:intergenic 35.0%
CATTTGATAAGTAACTGTCC+AGG + chr3_2:85364046-85364065 Msa0433050:intron 35.0%
AAAAATTCAAGGTCTGAACC+TGG - chr3_2:85364067-85364086 None:intergenic 35.0%
! AGGTTCAGACCTTGAATTTT+TGG + chr3_2:85364066-85364085 Msa0433050:intron 35.0%
!!! AGACCTTGAATTTTTGGAAC+AGG + chr3_2:85364072-85364091 Msa0433050:intron 35.0%
!!! CTTGAATTTTTGGAACAGGT+CGG + chr3_2:85364076-85364095 Msa0433050:intron 35.0%
TCTGAAAATAGTGAGCATCA+TGG + chr3_2:85364227-85364246 Msa0433050:exon 35.0%
CTGAAAATAGTGAGCATCAT+GGG + chr3_2:85364228-85364247 Msa0433050:exon 35.0%
TCATTGCACTCAAATTGAAG+AGG - chr3_2:85364279-85364298 None:intergenic 35.0%
TTCAATTTGAGTGCAATGAC+AGG + chr3_2:85364280-85364299 Msa0433050:CDS 35.0%
CAATGACAGGAATCTTATCA+CGG + chr3_2:85364293-85364312 Msa0433050:CDS 35.0%
! TCATTGATCTTTTTGTGGTC+TGG - chr3_2:85364384-85364403 None:intergenic 35.0%
! GCAAGTCATTGATCTTTTTG+TGG - chr3_2:85364389-85364408 None:intergenic 35.0%
AGAGAGGATATATGGAGTAT+GGG + chr3_2:85364412-85364431 Msa0433050:CDS 35.0%
TCTGTAGATGTCAACATTAC+CGG + chr3_2:85364511-85364530 Msa0433050:intron 35.0%
CACAGTCTAGTATTTCATGA+TGG + chr3_2:85364618-85364637 Msa0433050:intron 35.0%
CTTATTGCTTGCCATAAATG+AGG + chr3_2:85364679-85364698 Msa0433050:intron 35.0%
GTTAAGACTCTCGAATTTCT+TGG + chr3_2:85364721-85364740 Msa0433050:intron 35.0%
!!! TGCATGGGCAATTATTTTTG+CGG + chr3_2:85365414-85365433 Msa0433050:CDS 35.0%
AATGTATTGTTCCTATCCCA+AGG + chr3_2:85365565-85365584 Msa0433050:intron 35.0%
! TGTTGCTTAACCAAGAGAAA+AGG - chr3_2:85365617-85365636 None:intergenic 35.0%
AATAGTCATAATGATCGGCA+AGG + chr3_2:85365696-85365715 Msa0433050:intron 35.0%
AGTGCATAGTTGTATTCATG+AGG + chr3_2:85365722-85365741 Msa0433050:intron 35.0%
AGATAACCATAGAGACTCAT+AGG + chr3_2:85365746-85365765 Msa0433050:intron 35.0%
!!! TTTCCCATTTTGAGTTTGAG+GGG - chr3_2:85365931-85365950 None:intergenic 35.0%
!!! CTTTCCCATTTTGAGTTTGA+GGG - chr3_2:85365932-85365951 None:intergenic 35.0%
!!! ACTTTCCCATTTTGAGTTTG+AGG - chr3_2:85365933-85365952 None:intergenic 35.0%
ATGAAAAACATAGAAAGCCC+AGG + chr3_2:85366053-85366072 Msa0433050:intron 35.0%
TAACGTGATTCAATAAGGCT+GGG - chr3_2:85366243-85366262 None:intergenic 35.0%
! TGTGGTAACGTGATTCAATA+AGG - chr3_2:85366248-85366267 None:intergenic 35.0%
!!! TGCAATGCAAAAAGTGCTTT+TGG - chr3_2:85366282-85366301 None:intergenic 35.0%
TAATCGCTTTGCTTCTGTAA+TGG + chr3_2:85366495-85366514 Msa0433050:intron 35.0%
TCAATCGAACCAAAATTCGA+TGG - chr3_2:85367002-85367021 None:intergenic 35.0%
!!! TCGAATTTTGGTTCGATTGA+AGG + chr3_2:85367002-85367021 Msa0433050:intron 35.0%
!! TTTTGATTCTCCGATTGTTC+CGG - chr3_2:85367036-85367055 None:intergenic 35.0%
TGAAGAATCAAGAATGGAAG+AGG + chr3_2:85367082-85367101 Msa0433050:intron 35.0%
ACATCATCATCTTCATTCCT+AGG + chr3_2:85367161-85367180 Msa0433050:intron 35.0%
CATCATCATCTTCATTCCTA+GGG + chr3_2:85367162-85367181 Msa0433050:intron 35.0%
AATAGTCATAATGATCGGCA+AGG + chr3_2:85365696-85365715 Msa0433050:intron 35.0%
AGTGCATAGTTGTATTCATG+AGG + chr3_2:85365722-85365741 Msa0433050:intron 35.0%
AGATAACCATAGAGACTCAT+AGG + chr3_2:85365746-85365765 Msa0433050:intron 35.0%
!!! AGATTGTCCTGTTTGTTTTG+AGG + chr3_2:85367732-85367751 Msa0433050:CDS 35.0%
CATAACTACACTACCGAAAT+TGG + chr3_2:85367822-85367841 Msa0433050:intron 35.0%
AATACTGCGATCACCAATTT+CGG - chr3_2:85367838-85367857 None:intergenic 35.0%
TTTCATTCAGACAGCTCTTA+TGG - chr3_2:85367910-85367929 None:intergenic 35.0%
! AAACTGACTTTGAGCACAAA+GGG - chr3_2:85368049-85368068 None:intergenic 35.0%
GTCAGTTTGTGATATGTCAA+AGG + chr3_2:85368061-85368080 Msa0433050:CDS 35.0%
!! GGAAAAAATTGACTTGGAAC+TGG + chr3_2:85368088-85368107 Msa0433050:CDS 35.0%
TTAAGATATGGTTCAGGCAT+CGG - chr3_2:85368122-85368141 None:intergenic 35.0%
AAAGTCAAATTGGGTCTCTT+TGG - chr3_2:85368343-85368362 None:intergenic 35.0%
! ATTTTGTTCATATGCCATCG+TGG + chr3_2:85368451-85368470 Msa0433050:intron 35.0%
! CAAGAGAGTGCATAAAATCT+TGG - chr3_2:85368521-85368540 None:intergenic 35.0%
! ATTTTATGCACTCTCTTGAC+AGG + chr3_2:85368523-85368542 Msa0433050:intron 35.0%
CTCCATTCTTATGAAGATAG+TGG + chr3_2:85368704-85368723 Msa0433050:three_prime_UTR 35.0%
AGCCACTATCTTCATAAGAA+TGG - chr3_2:85368709-85368728 None:intergenic 35.0%
ATCGGTTGCATTGAATATGA+TGG + chr3_2:85368739-85368758 Msa0433050:three_prime_UTR 35.0%
ACGTAAACAATAGAGCACAA+GGG - chr3_2:85368854-85368873 None:intergenic 35.0%
AACGTAAACAATAGAGCACA+AGG - chr3_2:85368855-85368874 None:intergenic 35.0%
ATGAACACATAGTCCCTTAA+TGG + chr3_2:85368926-85368945 Msa0433050:three_prime_UTR 35.0%
ATTAGGCTGTAATAAACGTG+TGG + chr3_2:85368958-85368977 Msa0433050:three_prime_UTR 35.0%
! TTTTCTTAAGACATGGGAAC+GGG - chr3_2:85369004-85369023 None:intergenic 35.0%
!!! TGGATAGTTGTATTTTGGCA+TGG + chr3_2:85369065-85369084 Msa0433050:three_prime_UTR 35.0%
!!! GGATAGTTGTATTTTGGCAT+GGG + chr3_2:85369066-85369085 Msa0433050:three_prime_UTR 35.0%
GGATCAAAGAGGAATGAGAA+TGG - chr3_2:85363222-85363241 None:intergenic 40.0%
GCAGACAAAACAAAGAAGGA+TGG - chr3_2:85363247-85363266 None:intergenic 40.0%
!!! TCCTTCTTTGTTTTGTCTGC+TGG + chr3_2:85363247-85363266 Msa0433050:five_prime_UTR 40.0%
!!! CCTTCTTTGTTTTGTCTGCT+GGG + chr3_2:85363248-85363267 Msa0433050:five_prime_UTR 40.0%
TTAGAGTTGGAGGATATGAG+AGG - chr3_2:85363322-85363341 None:intergenic 40.0%
TCTCATATCCTCCAACTCTA+AGG + chr3_2:85363321-85363340 Msa0433050:five_prime_UTR 40.0%
TGTCAGACACTTTAGTAGAC+TGG + chr3_2:85363568-85363587 Msa0433050:intron 40.0%
CGACCTGTTCCAAAAATTCA+AGG - chr3_2:85364078-85364097 None:intergenic 40.0%
GTTTATACATGCAGGTCACT+AGG + chr3_2:85364170-85364189 Msa0433050:intron 40.0%
AGTGCAAGCTATCTAGAAAC+AGG - chr3_2:85364203-85364222 None:intergenic 40.0%
TGCATGTGCTCTTCATTTGA+GGG - chr3_2:85364339-85364358 None:intergenic 40.0%
ATGCATGTGCTCTTCATTTG+AGG - chr3_2:85364340-85364359 None:intergenic 40.0%
! TCAAATGAAGAGCACATGCA+TGG + chr3_2:85364339-85364358 Msa0433050:CDS 40.0%
! TCTTTTTGTGGTCTGGTGAT+TGG - chr3_2:85364377-85364396 None:intergenic 40.0%
GAGAGAGGATATATGGAGTA+TGG + chr3_2:85364411-85364430 Msa0433050:CDS 40.0%
! CTTTTGCCTCATTGTGACAA+TGG - chr3_2:85364587-85364606 None:intergenic 40.0%
! CTGCAGCATCACTTTCATTT+TGG + chr3_2:85364892-85364911 Msa0433050:intron 40.0%
AACATACCTGTTTGACCTGA+TGG - chr3_2:85364990-85365009 None:intergenic 40.0%
ATTGCAGATCTTCAATGAGG+TGG - chr3_2:85365024-85365043 None:intergenic 40.0%
CAGCAGAACTGTATCAATTG+CGG + chr3_2:85365387-85365406 Msa0433050:CDS 40.0%
!!! GCATGGGCAATTATTTTTGC+GGG + chr3_2:85365415-85365434 Msa0433050:CDS 40.0%
AAATTCCACAACCACTGCAA+TGG - chr3_2:85365482-85365501 None:intergenic 40.0%
AGTCATATCAACCTTGGGAT+AGG - chr3_2:85365579-85365598 None:intergenic 40.0%
TTACGAATCAGAGAATCCCA+AGG + chr3_2:85365671-85365690 Msa0433050:intron 40.0%
GATTCTCCTATGAGTCTCTA+TGG - chr3_2:85365755-85365774 None:intergenic 40.0%
AGCAAGCTATCTAGATAGCT+TGG - chr3_2:85365874-85365893 None:intergenic 40.0%
!!! TTCCCATTTTGAGTTTGAGG+GGG - chr3_2:85365930-85365949 None:intergenic 40.0%
TGATTCCCATCAGAACATGT+GGG - chr3_2:85366079-85366098 None:intergenic 40.0%
GTAACGTGATTCAATAAGGC+TGG - chr3_2:85366244-85366263 None:intergenic 40.0%
CTGTCAGTGATGATTGAAAC+TGG + chr3_2:85366387-85366406 Msa0433050:intron 40.0%
ACAACCGGAAACGAATTTGA+CGG + chr3_2:85366580-85366599 Msa0433050:intron 40.0%
TTCTCCGTCAAATTCGTTTC+CGG - chr3_2:85366587-85366606 None:intergenic 40.0%
CCAATCATCAATTTCGATCC+CGG - chr3_2:85366651-85366670 None:intergenic 40.0%
AAACGGAAGCTGAATCTTGA+TGG + chr3_2:85366689-85366708 Msa0433050:intron 40.0%
AGAAATCGCACCAATTTGGA+CGG + chr3_2:85366971-85366990 Msa0433050:intron 40.0%
! ACGGAGAATCCATCGAATTT+TGG + chr3_2:85366990-85367009 Msa0433050:intron 40.0%
TCGATTGAAGGAGAAGAAAC+CGG + chr3_2:85367014-85367033 Msa0433050:intron 40.0%
CGAAGCTGAAGAATCAAGAA+TGG + chr3_2:85367076-85367095 Msa0433050:intron 40.0%
ACCAATATCTGAATCGGAAG+CGG + chr3_2:85367133-85367152 Msa0433050:intron 40.0%
! GGATTCTCTGATTCGTAACA+TGG - chr3_2:85365669-85365688 None:intergenic 40.0%
TTACGAATCAGAGAATCCCA+AGG + chr3_2:85365671-85365690 Msa0433050:intron 40.0%
GATTCTCCTATGAGTCTCTA+TGG - chr3_2:85365755-85365774 None:intergenic 40.0%
AGCAAGCTATCTAGATAGCT+TGG - chr3_2:85365874-85365893 None:intergenic 40.0%
! GACAGCTCTTATGGATTGTA+TGG - chr3_2:85367901-85367920 None:intergenic 40.0%
AGAGCTGTCTGAATGAAATG+AGG + chr3_2:85367912-85367931 Msa0433050:CDS 40.0%
GAGCTGTCTGAATGAAATGA+GGG + chr3_2:85367913-85367932 Msa0433050:CDS 40.0%
! CAAACTGACTTTGAGCACAA+AGG - chr3_2:85368050-85368069 None:intergenic 40.0%
CAAATTGGGTCTCTTTGGAT+TGG - chr3_2:85368338-85368357 None:intergenic 40.0%
TGGATCCTTTGCAATGATTG+CGG + chr3_2:85368548-85368567 Msa0433050:CDS 40.0%
! TTTTGCCGCAATCATTGCAA+AGG - chr3_2:85368556-85368575 None:intergenic 40.0%
TTTGTGCGACAAGATGAAAC+TGG - chr3_2:85368589-85368608 None:intergenic 40.0%
TCAATGCAACCGATGCAAAT+GGG - chr3_2:85368733-85368752 None:intergenic 40.0%
TTCAATGCAACCGATGCAAA+TGG - chr3_2:85368734-85368753 None:intergenic 40.0%
! ATGGAAATGCATGAGTTGAG+CGG + chr3_2:85368758-85368777 Msa0433050:three_prime_UTR 40.0%
GTAAACAATAGAGCACAAGG+GGG - chr3_2:85368852-85368871 None:intergenic 40.0%
CGTAAACAATAGAGCACAAG+GGG - chr3_2:85368853-85368872 None:intergenic 40.0%
! AGTTTATGAAAGTGGTGGGG+TGG + chr3_2:85363172-85363191 Msa0433050:five_prime_UTR 45.0%
! GTTTATGAAAGTGGTGGGGT+GGG + chr3_2:85363173-85363192 Msa0433050:five_prime_UTR 45.0%
! TTTATGAAAGTGGTGGGGTG+GGG + chr3_2:85363174-85363193 Msa0433050:five_prime_UTR 45.0%
GAAGGATGGATGGATCAAAG+AGG - chr3_2:85363233-85363252 None:intergenic 45.0%
CCCAGCAGACAAAACAAAGA+AGG - chr3_2:85363251-85363270 None:intergenic 45.0%
!!! TTTGTTTTGTCTGCTGGGTC+AGG + chr3_2:85363253-85363272 Msa0433050:five_prime_UTR 45.0%
!! TTGTTTTGTCTGCTGGGTCA+GGG + chr3_2:85363254-85363273 Msa0433050:five_prime_UTR 45.0%
ATATGAGAGGAGAGAATGGC+CGG - chr3_2:85363309-85363328 None:intergenic 45.0%
GAGGATATGAGAGGAGAGAA+TGG - chr3_2:85363313-85363332 None:intergenic 45.0%
ACAACGAACCTTAGAGTTGG+AGG - chr3_2:85363332-85363351 None:intergenic 45.0%
GGAACAACGAACCTTAGAGT+TGG - chr3_2:85363335-85363354 None:intergenic 45.0%
GCACTCAAATTGAAGAGGCT+CGG - chr3_2:85364274-85364293 None:intergenic 45.0%
! ATCAATGACTTGCGAGAGAG+AGG + chr3_2:85364396-85364415 Msa0433050:CDS 45.0%
CTTGCGAGAGAGAGGATATA+TGG + chr3_2:85364404-85364423 Msa0433050:CDS 45.0%
GATGTCAACATTACCGGAGA+AGG + chr3_2:85364517-85364536 Msa0433050:intron 45.0%
TTGTCGCCATTGTCACAATG+AGG + chr3_2:85364578-85364597 Msa0433050:CDS 45.0%
ATACCTGTTTGACCTGATGG+CGG - chr3_2:85364987-85365006 None:intergenic 45.0%
ACTCTGTGAGACTGAACAAG+AGG + chr3_2:85365123-85365142 Msa0433050:CDS 45.0%
CCTGGAAGCAGAAGATATCA+AGG - chr3_2:85365365-85365384 None:intergenic 45.0%
CCTTGATATCTTCTGCTTCC+AGG + chr3_2:85365362-85365381 Msa0433050:intron 45.0%
TGATACAGTTCTGCTGAACC+TGG - chr3_2:85365383-85365402 None:intergenic 45.0%
TATCAATTGCGGTGTGTGCA+TGG + chr3_2:85365398-85365417 Msa0433050:CDS 45.0%
ATCAATTGCGGTGTGTGCAT+GGG + chr3_2:85365399-85365418 Msa0433050:CDS 45.0%
AGTCCCCCTCAAACTCAAAA+TGG + chr3_2:85365924-85365943 Msa0433050:intron 45.0%
GTCCCCCTCAAACTCAAAAT+GGG + chr3_2:85365925-85365944 Msa0433050:intron 45.0%
CTGATTCCCATCAGAACATG+TGG - chr3_2:85366080-85366099 None:intergenic 45.0%
! AAGGCTGGTTGCAAAGCTTA+AGG - chr3_2:85366135-85366154 None:intergenic 45.0%
! GCACTTTTGCAACAAAAGGC+TGG - chr3_2:85366150-85366169 None:intergenic 45.0%
AAATTCGTTTCCGGTTGTGG+TGG - chr3_2:85366578-85366597 None:intergenic 45.0%
GTCAAATTCGTTTCCGGTTG+TGG - chr3_2:85366581-85366600 None:intergenic 45.0%
ATCATCAATTTCGATCCCGG+AGG - chr3_2:85366648-85366667 None:intergenic 45.0%
! CCGGGATCGAAATTGATGAT+TGG + chr3_2:85366648-85366667 Msa0433050:intron 45.0%
! TTTTCCGACGAACAACCACA+AGG + chr3_2:85366734-85366753 Msa0433050:intron 45.0%
! ACAGTGCTACTCATTCTCAC+CGG + chr3_2:85366786-85366805 Msa0433050:intron 45.0%
GAGTCGTGATTCTTCAATGC+TGG + chr3_2:85366855-85366874 Msa0433050:intron 45.0%
CTTCACGTAACCGTCTTCTT+CGG + chr3_2:85366887-85366906 Msa0433050:intron 45.0%
TTCGTTGCTTCCGAAGAAGA+CGG - chr3_2:85366900-85366919 None:intergenic 45.0%
GGAAGCAACGAACACAGAAT+CGG + chr3_2:85366908-85366927 Msa0433050:intron 45.0%
CGCAAGAAATCGCACCAATT+TGG + chr3_2:85366967-85366986 Msa0433050:intron 45.0%
! GATGGATTCTCCGTCCAAAT+TGG - chr3_2:85366984-85367003 None:intergenic 45.0%
GGAGAAGAAACCGGAACAAT+CGG + chr3_2:85367023-85367042 Msa0433050:intron 45.0%
TTGATTCTTCAGCTTCGCAC+AGG - chr3_2:85367073-85367092 None:intergenic 45.0%
TCCGCTTCCGATTCAGATAT+TGG - chr3_2:85367137-85367156 None:intergenic 45.0%
TTCTTCCACTGCTACAAGTG+TGG + chr3_2:85367545-85367564 Msa0433050:CDS 45.0%
ACTTACCACACTTGTAGCAG+TGG - chr3_2:85367553-85367572 None:intergenic 45.0%
ACATAGTTGTATGGCCACGA+TGG - chr3_2:85368468-85368487 None:intergenic 45.0%
ATGCACTCTCTTGACAGGTT+TGG + chr3_2:85368528-85368547 Msa0433050:intron 45.0%
TAGTGGCTACCCATTTGCAT+CGG + chr3_2:85368721-85368740 Msa0433050:three_prime_UTR 45.0%
! TGGAAATGCATGAGTTGAGC+GGG + chr3_2:85368759-85368778 Msa0433050:three_prime_UTR 45.0%
!! TTCATTGTGCTTGCTGTTGC+AGG + chr3_2:85368804-85368823 Msa0433050:three_prime_UTR 45.0%
TTTGGCATGGGAAAATCTGC+TGG + chr3_2:85369078-85369097 Msa0433050:three_prime_UTR 45.0%
!!! AAAATAACTTTTTTTTTTTA+AGG - chr3_2:85363764-85363783 None:intergenic 5.0%
GCAGTAAATGCTTGCGTGTC+AGG - chr3_2:85363089-85363108 None:intergenic 50.0%
! TTATGAAAGTGGTGGGGTGG+GGG + chr3_2:85363175-85363194 Msa0433050:five_prime_UTR 50.0%
! TGTTTTGTCTGCTGGGTCAG+GGG + chr3_2:85363255-85363274 Msa0433050:five_prime_UTR 50.0%
! AGAATGGCCGGTCTTGTGTT+CGG - chr3_2:85363297-85363316 None:intergenic 50.0%
AGTGAGCATCATGGGAGAAG+TGG + chr3_2:85364236-85364255 Msa0433050:exon 50.0%
!! ACCGGAGAAGGTGTCGTATT+AGG + chr3_2:85364529-85364548 Msa0433050:CDS 50.0%
CCCTAATACGACACCTTCTC+CGG - chr3_2:85364533-85364552 None:intergenic 50.0%
!! CCGGAGAAGGTGTCGTATTA+GGG + chr3_2:85364530-85364549 Msa0433050:CDS 50.0%
TACCTGTTTGACCTGATGGC+GGG - chr3_2:85364986-85365005 None:intergenic 50.0%
AAGCAGCAGTACCATTGCAG+TGG + chr3_2:85365468-85365487 Msa0433050:CDS 50.0%
CAGTACCATTGCAGTGGTTG+TGG + chr3_2:85365474-85365493 Msa0433050:CDS 50.0%
GCAGTGGTTGTGGAATTTGC+AGG + chr3_2:85365484-85365503 Msa0433050:CDS 50.0%
TCACTGACAGCGAACGTGTT+TGG - chr3_2:85366377-85366396 None:intergenic 50.0%
ACTTTCTTGCCTCGATCCCA+TGG + chr3_2:85366549-85366568 Msa0433050:intron 50.0%
GAACGAACCTGTTCTTCCTC+CGG + chr3_2:85366629-85366648 Msa0433050:intron 50.0%
AACGAACCTGTTCTTCCTCC+GGG + chr3_2:85366630-85366649 Msa0433050:intron 50.0%
TGTGCCTTGTGGTTGTTCGT+CGG - chr3_2:85366741-85366760 None:intergenic 50.0%
ACGAACAACCACAAGGCACA+AGG + chr3_2:85366741-85366760 Msa0433050:intron 50.0%
AGAGCTCATCGCAGCTTTAC+CGG - chr3_2:85366808-85366827 None:intergenic 50.0%
CGAAGAAGACGGTTACGTGA+AGG - chr3_2:85366889-85366908 None:intergenic 50.0%
! GCTTCGCACAGGTTCGTTTT+CGG - chr3_2:85367062-85367081 None:intergenic 50.0%
TGGTATCAGAGCGATACCCT+AGG - chr3_2:85367181-85367200 None:intergenic 50.0%
GAAAAACGGTCACCCTTGTG+TGG + chr3_2:85367693-85367712 Msa0433050:CDS 50.0%
GCATTGCTCCTTCCACACAA+GGG - chr3_2:85367708-85367727 None:intergenic 50.0%
TGCATTGCTCCTTCCACACA+AGG - chr3_2:85367709-85367728 None:intergenic 50.0%
GATGTCTCCGTGTTGCATTG+CGG + chr3_2:85367875-85367894 Msa0433050:CDS 50.0%
TGTATGGCCGCAATGCAACA+CGG - chr3_2:85367885-85367904 None:intergenic 50.0%
!! TTGTGCTTGCTGTTGCAGGT+TGG + chr3_2:85368808-85368827 Msa0433050:three_prime_UTR 50.0%
!! TGTGCTTGCTGTTGCAGGTT+GGG + chr3_2:85368809-85368828 Msa0433050:three_prime_UTR 50.0%
! TGGGTCAGGGGAGCTCTAAT+CGG + chr3_2:85363267-85363286 Msa0433050:five_prime_UTR 55.0%
! ACCTGTTTGACCTGATGGCG+GGG - chr3_2:85364985-85365004 None:intergenic 55.0%
CCATCAGAACATGTGGGCCT+GGG - chr3_2:85366073-85366092 None:intergenic 55.0%
CCAGGCCCACATGTTCTGAT+GGG + chr3_2:85366071-85366090 Msa0433050:intron 55.0%
! TGGTGGATACCATGGGATCG+AGG - chr3_2:85366561-85366580 None:intergenic 55.0%
!! CCGGTTGTGGTGGATACCAT+GGG - chr3_2:85366568-85366587 None:intergenic 55.0%
CCCATGGTATCCACCACAAC+CGG + chr3_2:85366565-85366584 Msa0433050:intron 55.0%
!! TCCGGTTGTGGTGGATACCA+TGG - chr3_2:85366569-85366588 None:intergenic 55.0%
TTCGATCCCGGAGGAAGAAC+AGG - chr3_2:85366639-85366658 None:intergenic 55.0%
CCACAAGGCACAAGGTTTCG+CGG + chr3_2:85366749-85366768 Msa0433050:intron 55.0%
AACGGTCACCCTTGTGTGGA+AGG + chr3_2:85367697-85367716 Msa0433050:CDS 55.0%
!! GTGCTTGCTGTTGCAGGTTG+GGG + chr3_2:85368810-85368829 Msa0433050:three_prime_UTR 55.0%
! TGCAGGTTGGGGCAACTAGT+TGG + chr3_2:85368821-85368840 Msa0433050:three_prime_UTR 55.0%
CGGAGCTCCGAACACAAGAC+CGG + chr3_2:85363287-85363306 Msa0433050:five_prime_UTR 60.0%
ACACGACATTCCCCGCCATC+AGG + chr3_2:85364972-85364991 Msa0433050:CDS 60.0%
TCCCCGCCATCAGGTCAAAC+AGG + chr3_2:85364981-85365000 Msa0433050:CDS 60.0%
CCCAGGCCCACATGTTCTGA+TGG + chr3_2:85366070-85366089 Msa0433050:intron 60.0%
CCCATCAGAACATGTGGGCC+TGG - chr3_2:85366074-85366093 None:intergenic 60.0%
CCGCGAAACCTTGTGCCTTG+TGG - chr3_2:85366752-85366771 None:intergenic 60.0%
CAAGGCACAAGGTTTCGCGG+CGG + chr3_2:85366752-85366771 Msa0433050:intron 60.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 85363086 85369126 85363086 ID=Msa0433050;Name=Msa0433050
chr3_2 mRNA 85363086 85369126 85363086 ID=Msa0433050-mRNA-1;Parent=Msa0433050;Name=Msa0433050-mRNA-1;_AED=0.07;_eAED=0.07;_QI=319|1|1|1|0.8|0.72|11|471|309
chr3_2 exon 85363086 85363342 85363086 ID=Msa0433050-mRNA-1:exon:24347;Parent=Msa0433050-mRNA-1
chr3_2 exon 85364184 85364433 85364184 ID=Msa0433050-mRNA-1:exon:24348;Parent=Msa0433050-mRNA-1
chr3_2 exon 85364518 85364605 85364518 ID=Msa0433050-mRNA-1:exon:24349;Parent=Msa0433050-mRNA-1
chr3_2 exon 85364943 85365002 85364943 ID=Msa0433050-mRNA-1:exon:24350;Parent=Msa0433050-mRNA-1
chr3_2 exon 85365112 85365144 85365112 ID=Msa0433050-mRNA-1:exon:24351;Parent=Msa0433050-mRNA-1
chr3_2 exon 85365384 85365505 85365384 ID=Msa0433050-mRNA-1:exon:24352;Parent=Msa0433050-mRNA-1
chr3_2 exon 85367526 85367566 85367526 ID=Msa0433050-mRNA-1:exon:24353;Parent=Msa0433050-mRNA-1
chr3_2 exon 85367671 85367753 85367671 ID=Msa0433050-mRNA-1:exon:24354;Parent=Msa0433050-mRNA-1
chr3_2 exon 85367854 85367945 85367854 ID=Msa0433050-mRNA-1:exon:24355;Parent=Msa0433050-mRNA-1
chr3_2 exon 85368037 85368148 85368037 ID=Msa0433050-mRNA-1:exon:24356;Parent=Msa0433050-mRNA-1
chr3_2 exon 85368545 85369126 85368545 ID=Msa0433050-mRNA-1:exon:24357;Parent=Msa0433050-mRNA-1
chr3_2 five_prime_UTR 85363086 85363342 85363086 ID=Msa0433050-mRNA-1:five_prime_utr;Parent=Msa0433050-mRNA-1
chr3_2 five_prime_UTR 85364184 85364245 85364184 ID=Msa0433050-mRNA-1:five_prime_utr;Parent=Msa0433050-mRNA-1
chr3_2 CDS 85364246 85364433 85364246 ID=Msa0433050-mRNA-1:cds;Parent=Msa0433050-mRNA-1
chr3_2 CDS 85364518 85364605 85364518 ID=Msa0433050-mRNA-1:cds;Parent=Msa0433050-mRNA-1
chr3_2 CDS 85364943 85365002 85364943 ID=Msa0433050-mRNA-1:cds;Parent=Msa0433050-mRNA-1
chr3_2 CDS 85365112 85365144 85365112 ID=Msa0433050-mRNA-1:cds;Parent=Msa0433050-mRNA-1
chr3_2 CDS 85365384 85365505 85365384 ID=Msa0433050-mRNA-1:cds;Parent=Msa0433050-mRNA-1
chr3_2 CDS 85367526 85367566 85367526 ID=Msa0433050-mRNA-1:cds;Parent=Msa0433050-mRNA-1
chr3_2 CDS 85367671 85367753 85367671 ID=Msa0433050-mRNA-1:cds;Parent=Msa0433050-mRNA-1
chr3_2 CDS 85367854 85367945 85367854 ID=Msa0433050-mRNA-1:cds;Parent=Msa0433050-mRNA-1
chr3_2 CDS 85368037 85368148 85368037 ID=Msa0433050-mRNA-1:cds;Parent=Msa0433050-mRNA-1
chr3_2 CDS 85368545 85368655 85368545 ID=Msa0433050-mRNA-1:cds;Parent=Msa0433050-mRNA-1
chr3_2 three_prime_UTR 85368656 85369126 85368656 ID=Msa0433050-mRNA-1:three_prime_utr;Parent=Msa0433050-mRNA-1
Gene Sequence

>Msa0433050

ATGGGAGAAGTGGCAGTAATGCACTCCGAGCCTCTTCAATTTGAGTGCAATGACAGGAATCTTATCACGGAGAAAGATGTGCATAATCTACCCTCAAATGAAGAGCACATGCATGGCGAAAAGTCTAGCCAATCACCAGACCACAAAAAGATCAATGACTTGCGAGAGAGAGGATATATGGAGTATGGATGTCAACATTACCGGAGAAGGTGTCGTATTAGGGCCCCTTGTTGCAATGAGATATTTGATTGTCGCCATTGTCACAATGAGGCAAAAAACAGCATCGACGTCAATCAGAAGCATAGACACGACATTCCCCGCCATCAGGTCAAACAGGTGATATGTTCACTCTGTGAGACTGAACAAGAGGTTCAGCAGAACTGTATCAATTGCGGTGTGTGCATGGGCAATTATTTTTGCGGGACATGTAAGCTCTTTGATGATGATGTATCTAAGCAGCAGTACCATTGCAGTGGTTGTGGAATTTGCAGAACTGGAGGGTCTGAAAATTTCTTCCACTGCTACAAGTGTGGTTGTTGCTACTCAACTTTGTTGAAAAACGGTCACCCTTGTGTGGAAGGAGCAATGCATCAAGATTGTCCTGTTTGTTTTGAGTATTTGTTTGAATCTGTCAACGATGTCTCCGTGTTGCATTGCGGCCATACAATCCATAAGAGCTGTCTGAATGAAATGAGGGAACATTTTCAGTATGCATGCCCTTTGTGCTCAAAGTCAGTTTGTGATATGTCAAAGGTTTGGGAAAAAATTGACTTGGAACTGGCTGCTACACCGATGCCTGAACCATATCTTAATAAAATGGTTTGGATCCTTTGCAATGATTGCGGCAAAAATTCTCATGTCCAGTTTCATCTTGTCGCACAAAAGTGCTTGAACTGCAAATCTTATAACACAAGACAAATAAGAGGCTGA

Protein sequence

>Msa0433050

MGEVAVMHSEPLQFECNDRNLITEKDVHNLPSNEEHMHGEKSSQSPDHKKINDLRERGYMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAKNSIDVNQKHRHDIPRHQVKQVICSLCETEQEVQQNCINCGVCMGNYFCGTCKLFDDDVSKQQYHCSGCGICRTGGSENFFHCYKCGCCYSTLLKNGHPCVEGAMHQDCPVCFEYLFESVNDVSVLHCGHTIHKSCLNEMREHFQYACPLCSKSVCDMSKVWEKIDLELAATPMPEPYLNKMVWILCNDCGKNSHVQFHLVAQKCLNCKSYNTRQIRG*