Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0385710 | XP_013462243.1 | 92.995 | 728 | 17 | 1 | 1 | 694 | 1 | 728 | 0.0 | 1398 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0385710 | sp|P48147|PPCE_HUMAN | 52.078 | 722 | 294 | 7 | 8 | 693 | 4 | 709 | 0.0 | 792 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0385710 | A0A072V4K2 | 92.995 | 728 | 17 | 1 | 1 | 694 | 1 | 728 | 0.0 | 1398 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0033110 | Msa0385710 | -0.801321 | 9.516206e-49 | -8.615850e-47 |
| Msa0186590 | Msa0385710 | 0.964919 | 6.156100e-124 | -8.615850e-47 |
| Msa0207670 | Msa0385710 | -0.803091 | 4.112156e-49 | -8.615850e-47 |
| Msa0385710 | Msa0435600 | 0.994864 | 7.119230e-211 | -8.615850e-47 |
| Msa0385710 | Msa0479720 | 0.996111 | 1.573049e-223 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0385710 | MtrunA17_Chr3g0143651 | 92.995 | 728 | 17 | 1 | 1 | 694 | 1 | 728 | 0.0 | 1398 |
| Msa0385710 | MtrunA17_Chr1g0157311 | 76.022 | 734 | 136 | 4 | 1 | 694 | 55 | 788 | 0.0 | 1144 |
| Msa0385710 | MtrunA17_Chr1g0157291 | 87.135 | 171 | 22 | 0 | 396 | 566 | 1 | 171 | 1.37e-107 | 323 |
| Msa0385710 | MtrunA17_Chr1g0157281 | 71.084 | 166 | 48 | 0 | 164 | 329 | 11 | 176 | 1.49e-76 | 243 |
| Msa0385710 | MtrunA17_Chr1g0157301 | 84.375 | 128 | 17 | 1 | 570 | 694 | 3 | 130 | 1.66e-72 | 231 |
| Msa0385710 | MtrunA17_Chr1g0212361 | 26.168 | 749 | 437 | 30 | 7 | 688 | 62 | 761 | 1.90e-49 | 185 |
| Msa0385710 | MtrunA17_Chr5g0420581 | 25.060 | 419 | 236 | 12 | 271 | 624 | 17 | 422 | 1.57e-23 | 103 |
| Msa0385710 | MtrunA17_Chr8g0374081 | 31.481 | 216 | 135 | 4 | 408 | 619 | 518 | 724 | 1.58e-21 | 99.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0385710 | AT1G76140.1 | 73.416 | 726 | 159 | 1 | 3 | 694 | 70 | 795 | 0.0 | 1139 |
| Msa0385710 | AT1G76140.2 | 73.140 | 726 | 158 | 2 | 3 | 694 | 70 | 792 | 0.0 | 1129 |
| Msa0385710 | AT1G20380.1 | 70.523 | 726 | 180 | 1 | 3 | 694 | 6 | 731 | 0.0 | 1088 |
| Msa0385710 | AT1G20380.2 | 74.692 | 569 | 144 | 0 | 126 | 694 | 1 | 569 | 0.0 | 908 |
| Msa0385710 | AT1G50380.1 | 34.259 | 324 | 191 | 6 | 370 | 689 | 399 | 704 | 2.60e-49 | 184 |
| Msa0385710 | AT1G50380.2 | 34.154 | 325 | 192 | 6 | 369 | 689 | 464 | 770 | 7.78e-49 | 184 |
| Msa0385710 | AT1G69020.1 | 27.899 | 276 | 182 | 4 | 419 | 691 | 493 | 754 | 8.91e-29 | 123 |
| Msa0385710 | AT1G69020.2 | 27.899 | 276 | 182 | 4 | 419 | 691 | 525 | 786 | 9.91e-29 | 123 |
| Msa0385710 | AT5G66960.1 | 29.596 | 223 | 144 | 4 | 419 | 638 | 536 | 748 | 3.22e-15 | 80.1 |
Find 187 sgRNAs with CRISPR-Local
Find 408 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCCTCCAAACGAATATTT+AGG | 0.117671 | 3_1:-89406517 | None:intergenic |
| ATTCGTGGTGGTGGAGAATA+TGG | 0.163223 | 3_1:+89408175 | Msa0385710:CDS |
| ACTCGGACTAGTTTATATTT+TGG | 0.203708 | 3_1:-89407382 | None:intergenic |
| ACCTTCGATGCATAACTTTC+TGG | 0.218698 | 3_1:-89408299 | None:intergenic |
| AATGGAATAAAATTTCTTTC+AGG | 0.241282 | 3_1:+89410329 | Msa0385710:three_prime_UTR |
| GATCTTGGTACCATCTTTAC+TGG | 0.241696 | 3_1:-89407993 | None:intergenic |
| AATGTTCATTGTTGCGAAAA+AGG | 0.252900 | 3_1:+89408018 | Msa0385710:CDS |
| AAGCATTCCGGAATATTTAA+AGG | 0.255157 | 3_1:+89410530 | Msa0385710:three_prime_UTR |
| AAATATTCCGGAATGCTTAC+AGG | 0.259363 | 3_1:-89410525 | None:intergenic |
| CAGTCAATGCGACAAATTAT+AGG | 0.263877 | 3_1:-89410091 | None:intergenic |
| GACAAATTATAGGGTTTGTT+TGG | 0.287994 | 3_1:-89410081 | None:intergenic |
| CATGCTTGGACCTCAGATTA+TGG | 0.294369 | 3_1:+89408614 | Msa0385710:CDS |
| TTCCTCCAAACGAATATTTA+GGG | 0.301529 | 3_1:-89406516 | None:intergenic |
| GCATGACCCTTTAAATATTC+CGG | 0.302181 | 3_1:-89410537 | None:intergenic |
| TGTGATTGTTTCGTTAAGTT+TGG | 0.304907 | 3_1:-89405147 | None:intergenic |
| TCACACCCGTGTCTGTTATA+TGG | 0.305529 | 3_1:+89408058 | Msa0385710:CDS |
| GATATTGCAGAGGTTCGTTT+AGG | 0.308709 | 3_1:-89404870 | None:intergenic |
| TACTTATCGGCTCTTCTAAA+AGG | 0.314513 | 3_1:-89405200 | None:intergenic |
| ACAAATTATAGGGTTTGTTT+GGG | 0.322529 | 3_1:-89410080 | None:intergenic |
| GAAAGGGTTTGTTGAGAAAC+AGG | 0.331155 | 3_1:+89405082 | Msa0385710:CDS |
| CAGTAGTACAGTTTGTTAAC+TGG | 0.333458 | 3_1:-89407208 | None:intergenic |
| TAAACTAGTCCGAGTAGATT+TGG | 0.336481 | 3_1:+89407390 | Msa0385710:CDS |
| TGTTGGTGCTTGCATAAATC+AGG | 0.336647 | 3_1:+89408342 | Msa0385710:CDS |
| TAAATGATTGACGATTCATT+TGG | 0.353765 | 3_1:-89410413 | None:intergenic |
| CCTTCGATGCATAACTTTCT+GGG | 0.355840 | 3_1:-89408298 | None:intergenic |
| AACAATGAACATTGGGATCT+TGG | 0.362802 | 3_1:-89408008 | None:intergenic |
| CCTTTCACTTCTTCAGCATC+AGG | 0.363467 | 3_1:-89405065 | None:intergenic |
| ATTGTACTCACAAAACATTT+AGG | 0.364515 | 3_1:+89408130 | Msa0385710:CDS |
| GATAATAAAGCATATGATAA+AGG | 0.364685 | 3_1:-89406438 | None:intergenic |
| AGTCAATGCGACAAATTATA+GGG | 0.366757 | 3_1:-89410090 | None:intergenic |
| TTAGTTCCAGTGGTAGTGAT+TGG | 0.369107 | 3_1:+89405900 | Msa0385710:CDS |
| CCGTGTCTGTTATATGGATA+TGG | 0.375864 | 3_1:+89408064 | Msa0385710:CDS |
| GGGTCGTCCAACAAAGAAAA+TGG | 0.378215 | 3_1:+89410132 | Msa0385710:CDS |
| TATTCAACAGAGAAATGAAT+TGG | 0.387722 | 3_1:-89410365 | None:intergenic |
| CTCACCCATGATAAAGTATC+AGG | 0.390599 | 3_1:-89405965 | None:intergenic |
| GTTATCATGTGTCCAGCTAA+TGG | 0.391388 | 3_1:-89406078 | None:intergenic |
| GAAAACCCTAAATATTCGTT+TGG | 0.392760 | 3_1:+89406511 | Msa0385710:CDS |
| TATCAGTGCAACCTGGGAAC+AGG | 0.393410 | 3_1:+89407673 | Msa0385710:CDS |
| GGAGGAATTGTTACTGATGA+TGG | 0.394917 | 3_1:+89406532 | Msa0385710:CDS |
| AGAACATCAGCCCATGTGTT+TGG | 0.397071 | 3_1:-89407418 | None:intergenic |
| ATCTTGGTACCATCTTTACT+GGG | 0.399846 | 3_1:-89407992 | None:intergenic |
| AGAGAAATGAATTGGTTTGC+CGG | 0.401010 | 3_1:-89410357 | None:intergenic |
| ATATTGCAGAGGTTCGTTTA+GGG | 0.403171 | 3_1:-89404869 | None:intergenic |
| AAGTTAACAAGTTAACAATA+AGG | 0.403492 | 3_1:-89410570 | None:intergenic |
| AAATGATTGACGATTCATTT+GGG | 0.405369 | 3_1:-89410412 | None:intergenic |
| TTTGATGACTTCATTTCTGC+TGG | 0.418535 | 3_1:+89408244 | Msa0385710:CDS |
| GATGCATAACTTTCTGGGTT+GGG | 0.421422 | 3_1:-89408293 | None:intergenic |
| TTACTTGCCTGTAAGCATTC+CGG | 0.422857 | 3_1:+89410518 | Msa0385710:three_prime_UTR |
| ACTACACTCATTGAAGCTAT+TGG | 0.423920 | 3_1:+89409766 | Msa0385710:CDS |
| GTACAGAGACCTGAGCTCTT+TGG | 0.425018 | 3_1:+89408457 | Msa0385710:intron |
| ATACTCGTTAATTATTATCA+AGG | 0.428268 | 3_1:-89404775 | None:intergenic |
| GAGTCCGCATGTGCTGTAAA+TGG | 0.429061 | 3_1:+89407466 | Msa0385710:CDS |
| ATGGAAGTAAAAGTACTTAT+CGG | 0.429112 | 3_1:-89405213 | None:intergenic |
| TATCAATAAGTTTGACAAAA+GGG | 0.434231 | 3_1:-89407288 | None:intergenic |
| TGAGCTCTTTGGCTGTGCAT+TGG | 0.436966 | 3_1:+89408468 | Msa0385710:CDS |
| GTGCTTGAAGGCCAGTGTTA+TGG | 0.438027 | 3_1:-89405232 | None:intergenic |
| GCCGTCAACAACATAGTTGA+TGG | 0.439546 | 3_1:-89409719 | None:intergenic |
| AGCATTCCGGAATATTTAAA+GGG | 0.440020 | 3_1:+89410531 | Msa0385710:three_prime_UTR |
| TTATCAATAAGTTTGACAAA+AGG | 0.440234 | 3_1:-89407289 | None:intergenic |
| ACAGGTTCAATTGACGAATT+CGG | 0.443464 | 3_1:+89405100 | Msa0385710:CDS |
| ATTGGCTCATGTTGGCGTTA+TGG | 0.447955 | 3_1:+89408486 | Msa0385710:CDS |
| TGTCGCATTGACTGCAAAGC+TGG | 0.451677 | 3_1:+89410100 | Msa0385710:CDS |
| CAAGTAAGAGACTTAAAATC+AGG | 0.451702 | 3_1:+89407535 | Msa0385710:CDS |
| CTCCGAGTTTCAAGTCAATC+AGG | 0.455720 | 3_1:+89407747 | Msa0385710:CDS |
| ACAAAGAGGAAGAGTTTCAT+TGG | 0.457004 | 3_1:+89408645 | Msa0385710:CDS |
| TTCTGTTCTATGCCGAAGAA+AGG | 0.457239 | 3_1:-89404832 | None:intergenic |
| ATTGTTACTCAGGTCATGCT+TGG | 0.458027 | 3_1:+89408600 | Msa0385710:intron |
| TGCATAATGTCCGGCGACCA+TGG | 0.458324 | 3_1:+89409666 | Msa0385710:CDS |
| TCACGTAATATCTTCAGATC+AGG | 0.458498 | 3_1:-89407700 | None:intergenic |
| CGATGCATAACTTTCTGGGT+TGG | 0.460252 | 3_1:-89408294 | None:intergenic |
| GATCAGGAGTCCCTGTTCCC+AGG | 0.461520 | 3_1:-89407684 | None:intergenic |
| TAGTTCCAGTGGTAGTGATT+GGG | 0.463735 | 3_1:+89405901 | Msa0385710:CDS |
| AGAGAATGTCCTGTGCTTGA+AGG | 0.472057 | 3_1:-89405244 | None:intergenic |
| CCCATCAACTATGTTGTTGA+CGG | 0.472540 | 3_1:+89409718 | Msa0385710:CDS |
| ACAAACCTATGGTAAATTTG+TGG | 0.473864 | 3_1:-89408522 | None:intergenic |
| TAAACTGTGCCAATGTCAAT+TGG | 0.475125 | 3_1:-89407577 | None:intergenic |
| GATGGAGAAGTGGTAGATGC+TGG | 0.477294 | 3_1:+89406397 | Msa0385710:CDS |
| AGTGGTTGTTACCATCGATA+AGG | 0.480628 | 3_1:-89404952 | None:intergenic |
| TTACGTGAAATTGCAGTCCC+TGG | 0.488900 | 3_1:+89407715 | Msa0385710:CDS |
| TATCGTCTATCAGTGCAACC+TGG | 0.489294 | 3_1:+89407666 | Msa0385710:CDS |
| AAATTTCTTTCAGGCAATGC+CGG | 0.492630 | 3_1:+89410338 | Msa0385710:three_prime_UTR |
| AACCCTAAATATTCGTTTGG+AGG | 0.493035 | 3_1:+89406514 | Msa0385710:CDS |
| GTGGAGAATATGGGGAAGAA+TGG | 0.493539 | 3_1:+89408185 | Msa0385710:CDS |
| TTTACAAGCTTTCTGTCTCC+CGG | 0.495034 | 3_1:+89407643 | Msa0385710:CDS |
| TGCAAAGCTGGACATGGAGC+GGG | 0.497868 | 3_1:+89410112 | Msa0385710:CDS |
| GACATCACTTACTTGGGTGC+TGG | 0.498134 | 3_1:-89406125 | None:intergenic |
| TACGTGAAATTGCAGTCCCT+GGG | 0.499626 | 3_1:+89407716 | Msa0385710:CDS |
| TTCGTGGTGGTGGAGAATAT+GGG | 0.500297 | 3_1:+89408176 | Msa0385710:CDS |
| TACTGCATTGCGAATATTCG+TGG | 0.503623 | 3_1:+89408160 | Msa0385710:CDS |
| CTGAGCCTGATACTTTATCA+TGG | 0.506192 | 3_1:+89405960 | Msa0385710:CDS |
| CACACCCTTCGCTAATATAG+AGG | 0.509249 | 3_1:-89407183 | None:intergenic |
| CGGTTCCACAAATTTACCAT+AGG | 0.509404 | 3_1:+89408517 | Msa0385710:CDS |
| GGCTGTGCATTGGCTCATGT+TGG | 0.510464 | 3_1:+89408478 | Msa0385710:CDS |
| GGGTATTGAATTGACTTGTC+AGG | 0.510562 | 3_1:-89409698 | None:intergenic |
| AGCAATGGTGGACTTCTTGT+TGG | 0.523888 | 3_1:+89408325 | Msa0385710:CDS |
| ACAGGACATTCTCTATGTCC+AGG | 0.526352 | 3_1:+89405253 | Msa0385710:CDS |
| CTCCTCCTCTATATTAGCGA+AGG | 0.526676 | 3_1:+89407178 | Msa0385710:CDS |
| AATGCACAGCCAAAGAGCTC+AGG | 0.531544 | 3_1:-89408466 | None:intergenic |
| TGGTGAATACCTTGTGTCCA+CGG | 0.533386 | 3_1:+89408264 | Msa0385710:CDS |
| GATCACAGTATATATAAGAA+TGG | 0.534191 | 3_1:+89410311 | Msa0385710:three_prime_UTR |
| TTCATTTGGGTATGGTAGCA+TGG | 0.535902 | 3_1:-89410399 | None:intergenic |
| GATGCTGTTCCCATGGTCGC+CGG | 0.536594 | 3_1:-89409676 | None:intergenic |
| CATCAACTGCCAATTGACAT+TGG | 0.537917 | 3_1:+89407568 | Msa0385710:CDS |
| TCAAGTAACTTACTATCAGT+TGG | 0.539330 | 3_1:-89407492 | None:intergenic |
| GAGTCGTCTCTGCGAGCCGC+GGG | 0.539395 | 3_1:-89404892 | None:intergenic |
| TAACACTGGCCTTCAAGCAC+AGG | 0.543784 | 3_1:+89405235 | Msa0385710:CDS |
| ATTGACGATTCATTTGGGTA+TGG | 0.544799 | 3_1:-89410407 | None:intergenic |
| AGATGTTGAAATGTGAAAGA+AGG | 0.547877 | 3_1:-89404802 | None:intergenic |
| AATAAGTTTGACAAAAGGGA+GGG | 0.548091 | 3_1:-89407284 | None:intergenic |
| GCATAATGTCCGGCGACCAT+GGG | 0.548592 | 3_1:+89409667 | Msa0385710:CDS |
| CCCAGAAAGTTATGCATCGA+AGG | 0.551858 | 3_1:+89408298 | Msa0385710:CDS |
| AGTCGCCCAATCACTACCAC+TGG | 0.556942 | 3_1:-89405906 | None:intergenic |
| ACTCACCATTGCATAATGTC+CGG | 0.556955 | 3_1:+89409657 | Msa0385710:CDS |
| TATAAAAGTGTTGCGTATCG+AGG | 0.557739 | 3_1:+89405928 | Msa0385710:CDS |
| TCCTCCTCTATATTAGCGAA+GGG | 0.558762 | 3_1:+89407179 | Msa0385710:CDS |
| CTGATGCTGAAGAAGTGAAA+GGG | 0.561050 | 3_1:+89405066 | Msa0385710:CDS |
| CCTGATGCTGAAGAAGTGAA+AGG | 0.563636 | 3_1:+89405065 | Msa0385710:CDS |
| AGTACATCTTTGTCAGACTC+TGG | 0.565246 | 3_1:-89407442 | None:intergenic |
| GAGGAATTGTTACTGATGAT+GGG | 0.565555 | 3_1:+89406533 | Msa0385710:CDS |
| TGCATCGAAGGTGGAAGCAA+TGG | 0.565720 | 3_1:+89408310 | Msa0385710:CDS |
| TTGGTTTCTCCAAATCTACT+CGG | 0.566098 | 3_1:-89407399 | None:intergenic |
| GTGGTTGTTACCATCGATAA+GGG | 0.567279 | 3_1:-89404951 | None:intergenic |
| TTGGCGTTATGGACATGCTA+CGG | 0.568137 | 3_1:+89408497 | Msa0385710:CDS |
| ACACTCATTGAAGCTATTGG+CGG | 0.569808 | 3_1:+89409769 | Msa0385710:CDS |
| ATGGAGAAGTGGTAGATGCT+GGG | 0.570455 | 3_1:+89406398 | Msa0385710:CDS |
| GTATGTGCTATGTAGTAGCT+TGG | 0.575854 | 3_1:+89410048 | Msa0385710:CDS |
| TATATATACTGTGATCGAGT+GGG | 0.576156 | 3_1:-89410304 | None:intergenic |
| TGCACGGCGTGAAGATAATG+TGG | 0.577932 | 3_1:+89407609 | Msa0385710:CDS |
| GGGGAAGAATGGCATAAAGC+AGG | 0.580032 | 3_1:+89408196 | Msa0385710:CDS |
| ATCAGTGCAACCTGGGAACA+GGG | 0.581043 | 3_1:+89407674 | Msa0385710:CDS |
| GGGTATAACCCGTGGACACA+AGG | 0.581061 | 3_1:-89408273 | None:intergenic |
| GTTGCACTGATAGACGATAC+CGG | 0.582502 | 3_1:-89407662 | None:intergenic |
| AGAGTCGTCTCTGCGAGCCG+CGG | 0.586403 | 3_1:-89404893 | None:intergenic |
| CCATATCCATATAACAGACA+CGG | 0.588695 | 3_1:-89408064 | None:intergenic |
| ATAAGTTTGACAAAAGGGAG+GGG | 0.588761 | 3_1:-89407283 | None:intergenic |
| CATAGAACAGAACAATAGCA+TGG | 0.589976 | 3_1:+89404843 | Msa0385710:exon |
| TCGTGGTGGTGGAGAATATG+GGG | 0.590290 | 3_1:+89408177 | Msa0385710:CDS |
| GGTGAATACCTTGTGTCCAC+GGG | 0.591999 | 3_1:+89408265 | Msa0385710:CDS |
| CCGTCAACAACATAGTTGAT+GGG | 0.594747 | 3_1:-89409718 | None:intergenic |
| CTGCAAAGCTGGACATGGAG+CGG | 0.598830 | 3_1:+89410111 | Msa0385710:CDS |
| AACTCGGAGCGATCAAACCC+AGG | 0.600975 | 3_1:-89407733 | None:intergenic |
| CTTACTTGGGTGCTGGATAG+CGG | 0.601152 | 3_1:-89406118 | None:intergenic |
| TTGTCAGGATGCTGTTCCCA+TGG | 0.603618 | 3_1:-89409683 | None:intergenic |
| ATACTGTAGAGATGGAGAAG+TGG | 0.604745 | 3_1:+89406387 | Msa0385710:intron |
| ATTGACTGCAAAGCTGGACA+TGG | 0.604773 | 3_1:+89410106 | Msa0385710:CDS |
| GCTTATGCGCTTAGTTCCAG+TGG | 0.605231 | 3_1:+89405890 | Msa0385710:CDS |
| TTATATATACTGTGATCGAG+TGG | 0.610417 | 3_1:-89410305 | None:intergenic |
| CAATAAGTTTGACAAAAGGG+AGG | 0.615544 | 3_1:-89407285 | None:intergenic |
| CAGTTTATGATATTTCTGCA+CGG | 0.617175 | 3_1:+89407593 | Msa0385710:CDS |
| CAAATTATAGGGTTTGTTTG+GGG | 0.617870 | 3_1:-89410079 | None:intergenic |
| ATTGCGAATATTCGTGGTGG+TGG | 0.619449 | 3_1:+89408166 | Msa0385710:CDS |
| GTTACCATTTACAGCACATG+CGG | 0.620959 | 3_1:-89407470 | None:intergenic |
| AGAAAGTTATGCATCGAAGG+TGG | 0.621187 | 3_1:+89408301 | Msa0385710:CDS |
| ATCGTCTATCAGTGCAACCT+GGG | 0.624634 | 3_1:+89407667 | Msa0385710:CDS |
| TTGTTACCATCGATAAGGGT+CGG | 0.625434 | 3_1:-89404947 | None:intergenic |
| AATTGGCAGTTGATGCAACA+AGG | 0.625956 | 3_1:-89407560 | None:intergenic |
| ATCGAAGGTGGAAGCAATGG+TGG | 0.626239 | 3_1:+89408313 | Msa0385710:CDS |
| TACCTGATTGACTTGAAACT+CGG | 0.626953 | 3_1:-89407749 | None:intergenic |
| TCTGGGTTGGGTATAACCCG+TGG | 0.626963 | 3_1:-89408281 | None:intergenic |
| AGATCGATGAAACTGCTGAT+CGG | 0.628843 | 3_1:+89410234 | Msa0385710:intron |
| TTGCACTGATAGACGATACC+GGG | 0.631013 | 3_1:-89407661 | None:intergenic |
| GTCTGCACAACCATAATCTG+AGG | 0.634336 | 3_1:-89408624 | None:intergenic |
| ACTACATAGCACATACTGCA+TGG | 0.637775 | 3_1:-89410041 | None:intergenic |
| TACAATGCGACTAACACTGA+AGG | 0.640264 | 3_1:-89408113 | None:intergenic |
| ATTTGGAGAAACCAAACACA+TGG | 0.643157 | 3_1:+89407407 | Msa0385710:CDS |
| AATAGCTTCAATGAGTGTAG+TGG | 0.645106 | 3_1:-89409764 | None:intergenic |
| TGAGCCTGATACTTTATCAT+GGG | 0.645810 | 3_1:+89405961 | Msa0385710:CDS |
| ATAGAACAGAACAATAGCAT+GGG | 0.651501 | 3_1:+89404844 | Msa0385710:exon |
| TTATGGTTGTGCAGACAAAG+AGG | 0.652699 | 3_1:+89408631 | Msa0385710:CDS |
| ACCCTTCGCTAATATAGAGG+AGG | 0.652831 | 3_1:-89407180 | None:intergenic |
| AAATCGCCGACCCTTATCGA+TGG | 0.652884 | 3_1:+89404941 | Msa0385710:CDS |
| CTAAAAGGAGCATCATAACG+AGG | 0.655401 | 3_1:-89405185 | None:intergenic |
| CGAGCCGCGGGATATTGCAG+AGG | 0.656134 | 3_1:-89404880 | None:intergenic |
| AATTGTTACTGATGATGGGA+AGG | 0.656399 | 3_1:+89406537 | Msa0385710:CDS |
| AGCTGGACACATGATAACAA+AGG | 0.661177 | 3_1:+89406083 | Msa0385710:CDS |
| GGTCGCCGGACATTATGCAA+TGG | 0.661401 | 3_1:-89409662 | None:intergenic |
| CATATCCATATAACAGACAC+GGG | 0.665897 | 3_1:-89408063 | None:intergenic |
| ATCATGTGTCCAGCTAATGG+AGG | 0.666044 | 3_1:-89406075 | None:intergenic |
| ATGCGACTAACACTGAAGGA+TGG | 0.667946 | 3_1:-89408109 | None:intergenic |
| ACTCGGAGCGATCAAACCCA+GGG | 0.675535 | 3_1:-89407732 | None:intergenic |
| TGTCTGTTATATGGATATGG+TGG | 0.678377 | 3_1:+89408067 | Msa0385710:CDS |
| TGGTACTTCAGAAATTGATG+CGG | 0.690564 | 3_1:+89410484 | Msa0385710:three_prime_UTR |
| TGCATTGCGAATATTCGTGG+TGG | 0.694680 | 3_1:+89408163 | Msa0385710:CDS |
| TCTTGGTACCATCTTTACTG+GGG | 0.699589 | 3_1:-89407991 | None:intergenic |
| CGAACCTCTGCAATATCCCG+CGG | 0.709263 | 3_1:+89404876 | Msa0385710:CDS |
| TTTGGAGAAACCAAACACAT+GGG | 0.715304 | 3_1:+89407408 | Msa0385710:CDS |
| TCTGTCATTGACGATTACCA+TGG | 0.715354 | 3_1:+89404913 | Msa0385710:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTAACAAAGTATAAATA+TGG | + | chr3_1:89406203-89406222 | Msa0385710:intron | 10.0% |
| !! | GATATATATTAAAGAAAATA+AGG | - | chr3_1:89408752-89408771 | None:intergenic | 10.0% |
| !!! | TTTTTTCTTTTCTTTTTTGA+AGG | + | chr3_1:89405033-89405052 | Msa0385710:intron | 15.0% |
| !!! | CTTTGTTTTTTTTAATTAGT+CGG | + | chr3_1:89405326-89405345 | Msa0385710:intron | 15.0% |
| !! | AAAACATTAAAAATCATCAA+TGG | - | chr3_1:89406038-89406057 | None:intergenic | 15.0% |
| !!! | TATGCTTTATTATCATTTTT+TGG | + | chr3_1:89406447-89406466 | Msa0385710:CDS | 15.0% |
| !!! | ATGCTTTATTATCATTTTTT+GGG | + | chr3_1:89406448-89406467 | Msa0385710:CDS | 15.0% |
| !!! | GTTTACATTTTTAACTAATA+AGG | + | chr3_1:89407354-89407373 | Msa0385710:CDS | 15.0% |
| !! | AAATTTATCCTTAATATTTC+AGG | - | chr3_1:89408695-89408714 | None:intergenic | 15.0% |
| !!! | TTTTCTTTAATATATATCAG+CGG | + | chr3_1:89408754-89408773 | Msa0385710:intron | 15.0% |
| !! | AAAAGAAAACAAAATCAAAA+TGG | - | chr3_1:89409086-89409105 | None:intergenic | 15.0% |
| !! | TCATTTATCAATCAATATAA+TGG | + | chr3_1:89409229-89409248 | Msa0385710:intron | 15.0% |
| !!! | AGTTCAATAATTATTTCTTA+AGG | + | chr3_1:89409353-89409372 | Msa0385710:intron | 15.0% |
| !!! | GTTCAATAATTATTTCTTAA+GGG | + | chr3_1:89409354-89409373 | Msa0385710:intron | 15.0% |
| !!! | TTCAATAATTATTTCTTAAG+GGG | + | chr3_1:89409355-89409374 | Msa0385710:intron | 15.0% |
| !! | ATACTCGTTAATTATTATCA+AGG | - | chr3_1:89404778-89404797 | None:intergenic | 20.0% |
| !!! | TTTTTTAATTAGTCGGATTT+AGG | + | chr3_1:89405333-89405352 | Msa0385710:intron | 20.0% |
| !!! | TTTTTAATTAGTCGGATTTA+GGG | + | chr3_1:89405334-89405353 | Msa0385710:intron | 20.0% |
| !! | TTTCATAAACTCTTTAGTAT+AGG | + | chr3_1:89405627-89405646 | Msa0385710:intron | 20.0% |
| !!! | AAGTTATCTTTTCATTTTAC+AGG | + | chr3_1:89405760-89405779 | Msa0385710:intron | 20.0% |
| !!! | GATTTTTAATGTTTTGTTTC+AGG | + | chr3_1:89406043-89406062 | Msa0385710:intron | 20.0% |
| !! | TTGAATTGGTATTATCTATA+TGG | + | chr3_1:89406267-89406286 | Msa0385710:intron | 20.0% |
| !! | GATAATAAAGCATATGATAA+AGG | - | chr3_1:89406441-89406460 | None:intergenic | 20.0% |
| !! | TAAAATAAGAAAACATGCAA+CGG | + | chr3_1:89406622-89406641 | Msa0385710:intron | 20.0% |
| !! | ATAAGAATTCAAAACTATTC+AGG | - | chr3_1:89406966-89406985 | None:intergenic | 20.0% |
| !!! | GTTATGTAATTTTATGCATA+TGG | + | chr3_1:89407106-89407125 | Msa0385710:intron | 20.0% |
| !! | TATCAATAAGTTTGACAAAA+GGG | - | chr3_1:89407291-89407310 | None:intergenic | 20.0% |
| !! | TTATCAATAAGTTTGACAAA+AGG | - | chr3_1:89407292-89407311 | None:intergenic | 20.0% |
| !! | AAGTTGTTACATTGTTAAAT+AGG | + | chr3_1:89407855-89407874 | Msa0385710:intron | 20.0% |
| !! | AGGATAAATTTCAATATGTT+AGG | + | chr3_1:89408704-89408723 | Msa0385710:intron | 20.0% |
| !! | AATTAAGGGATATTAATCAA+AGG | - | chr3_1:89409022-89409041 | None:intergenic | 20.0% |
| !! | TTTGATTAATATCCCTTAAT+TGG | + | chr3_1:89409021-89409040 | Msa0385710:intron | 20.0% |
| !! | ATTAACAATAGTCCAATTAA+GGG | - | chr3_1:89409036-89409055 | None:intergenic | 20.0% |
| !! | TTTATCAATCAATATAATGG+AGG | + | chr3_1:89409232-89409251 | Msa0385710:intron | 20.0% |
| !! | CTCTATAAATATCAAAATGA+TGG | + | chr3_1:89409266-89409285 | Msa0385710:intron | 20.0% |
| !!! | TTTATTGTTTGGATATGTTT+TGG | + | chr3_1:89409587-89409606 | Msa0385710:intron | 20.0% |
| !! | CTATTATTATTTACTGCTTT+AGG | + | chr3_1:89409633-89409652 | Msa0385710:intron | 20.0% |
| !! | AAAGAAAATGGTAAGAATTA+TGG | + | chr3_1:89410144-89410163 | Msa0385710:intron | 20.0% |
| !! | GATATATAAAAGGTAGAAAA+AGG | - | chr3_1:89410185-89410204 | None:intergenic | 20.0% |
| !! | AATGGAATAAAATTTCTTTC+AGG | + | chr3_1:89410329-89410348 | Msa0385710:three_prime_UTR | 20.0% |
| !! | GAAAGTTGTTATAAAAACAT+TGG | + | chr3_1:89410464-89410483 | Msa0385710:three_prime_UTR | 20.0% |
| !! | AAGTTAACAAGTTAACAATA+AGG | - | chr3_1:89410573-89410592 | None:intergenic | 20.0% |
| !!! | ATGGAAGTAAAAGTACTTAT+CGG | - | chr3_1:89405216-89405235 | None:intergenic | 25.0% |
| ! | TAAACACTAATGTGATTGTT+TGG | + | chr3_1:89405385-89405404 | Msa0385710:intron | 25.0% |
| !! | TTTTGAATTCATCTGATTCA+GGG | + | chr3_1:89405503-89405522 | Msa0385710:intron | 25.0% |
| ! | AAGAGTTTATGAAAATAAGC+CGG | - | chr3_1:89405621-89405640 | None:intergenic | 25.0% |
| !! | ATTAAGTTGTTTATCCAAAC+AGG | + | chr3_1:89405733-89405752 | Msa0385710:intron | 25.0% |
| !! | TTTCATTTTACAGGATAGTT+TGG | + | chr3_1:89405769-89405788 | Msa0385710:intron | 25.0% |
| !! | TGTATCATTGAACACATTTT+CGG | + | chr3_1:89405844-89405863 | Msa0385710:intron | 25.0% |
| ! | TCATCAAAGATGATTTGAAT+TGG | + | chr3_1:89406253-89406272 | Msa0385710:intron | 25.0% |
| ! | AACTTATGTATGATTGTTCT+TGG | + | chr3_1:89406303-89406322 | Msa0385710:intron | 25.0% |
| !!! | TTATTATCATTTTTTGGGCA+CGG | + | chr3_1:89406453-89406472 | Msa0385710:CDS | 25.0% |
| ! | AGAAATTCTAATGTTCAATC+AGG | - | chr3_1:89406754-89406773 | None:intergenic | 25.0% |
| !! | CAACTTTGAAAAAATGTGTT+TGG | + | chr3_1:89406902-89406921 | Msa0385710:intron | 25.0% |
| !!! | TCAAAACTATTCAGGTTTTA+TGG | - | chr3_1:89406958-89406977 | None:intergenic | 25.0% |
| ! | TCTTATGTAACAACATATCA+AGG | + | chr3_1:89406986-89407005 | Msa0385710:intron | 25.0% |
| ! | AAAAACAGAATCAGATTCAT+GGG | - | chr3_1:89407142-89407161 | None:intergenic | 25.0% |
| ! | TAAAAACAGAATCAGATTCA+TGG | - | chr3_1:89407143-89407162 | None:intergenic | 25.0% |
| !!! | AAAAAGGATATTGTTTTGGA+TGG | + | chr3_1:89408034-89408053 | Msa0385710:CDS | 25.0% |
| ! | ATTGTACTCACAAAACATTT+AGG | + | chr3_1:89408130-89408149 | Msa0385710:CDS | 25.0% |
| ! | AATGAATCTAAACAAACCTA+TGG | - | chr3_1:89408536-89408555 | None:intergenic | 25.0% |
| ! | GATTAACAATAGTCCAATTA+AGG | - | chr3_1:89409037-89409056 | None:intergenic | 25.0% |
| !!! | TTGATTTTGTTTTCTTTTCC+TGG | + | chr3_1:89409088-89409107 | Msa0385710:intron | 25.0% |
| !! | TAATTATTTCTTAAGGGGAA+TGG | + | chr3_1:89409360-89409379 | Msa0385710:intron | 25.0% |
| ! | TGGTATTCATAATTATTTCC+TGG | + | chr3_1:89409425-89409444 | Msa0385710:intron | 25.0% |
| ! | TTAACAAATAGTTGTCACAT+AGG | + | chr3_1:89409894-89409913 | Msa0385710:intron | 25.0% |
| ! | TAACAAATAGTTGTCACATA+GGG | + | chr3_1:89409895-89409914 | Msa0385710:intron | 25.0% |
| !! | ACAAATTATAGGGTTTGTTT+GGG | - | chr3_1:89410083-89410102 | None:intergenic | 25.0% |
| !! | ATTCTTACCATTTTCTTTGT+TGG | - | chr3_1:89410142-89410161 | None:intergenic | 25.0% |
| ! | CTTCAGACATGATATATAAA+AGG | - | chr3_1:89410195-89410214 | None:intergenic | 25.0% |
| ! | GATCACAGTATATATAAGAA+TGG | + | chr3_1:89410311-89410330 | Msa0385710:three_prime_UTR | 25.0% |
| ! | TATTCAACAGAGAAATGAAT+TGG | - | chr3_1:89410368-89410387 | None:intergenic | 25.0% |
| ! | AAATGATTGACGATTCATTT+GGG | - | chr3_1:89410415-89410434 | None:intergenic | 25.0% |
| ! | TAAATGATTGACGATTCATT+TGG | - | chr3_1:89410416-89410435 | None:intergenic | 25.0% |
| AGATGTTGAAATGTGAAAGA+AGG | - | chr3_1:89404805-89404824 | None:intergenic | 30.0% | |
| ! | CATCTTTTATCTCCTTTCTT+CGG | + | chr3_1:89404820-89404839 | Msa0385710:five_prime_UTR | 30.0% |
| ATAGAACAGAACAATAGCAT+GGG | + | chr3_1:89404844-89404863 | Msa0385710:exon | 30.0% | |
| ATTGAATGAATTTGAGTCAG+TGG | - | chr3_1:89404973-89404992 | None:intergenic | 30.0% | |
| !!! | TTCTTTTCTTTTTTGAAGGC+TGG | + | chr3_1:89405037-89405056 | Msa0385710:intron | 30.0% |
| TGTGATTGTTTCGTTAAGTT+TGG | - | chr3_1:89405150-89405169 | None:intergenic | 30.0% | |
| ! | TACTTTTACTTCCATAACAC+TGG | + | chr3_1:89405221-89405240 | Msa0385710:CDS | 30.0% |
| !! | GTTTTGAATTCATCTGATTC+AGG | + | chr3_1:89405502-89405521 | Msa0385710:intron | 30.0% |
| CTCAAACAGTTTCACTAAAT+GGG | - | chr3_1:89405551-89405570 | None:intergenic | 30.0% | |
| TCTCAAACAGTTTCACTAAA+TGG | - | chr3_1:89405552-89405571 | None:intergenic | 30.0% | |
| GAAATGTCATAACTCATAAG+CGG | - | chr3_1:89405587-89405606 | None:intergenic | 30.0% | |
| AAGATAACTTAGAACCTGTT+TGG | - | chr3_1:89405750-89405769 | None:intergenic | 30.0% | |
| ! | ATTTTACAGGATAGTTTGGA+GGG | + | chr3_1:89405773-89405792 | Msa0385710:intron | 30.0% |
| !!! | CCTGTTTTAATTTCTAGCAA+AGG | - | chr3_1:89406003-89406022 | None:intergenic | 30.0% |
| CCTTTGCTAGAAATTAAAAC+AGG | + | chr3_1:89406000-89406019 | Msa0385710:intron | 30.0% | |
| ! | TTAAATTTTCCTCCATTAGC+TGG | + | chr3_1:89406066-89406085 | Msa0385710:CDS | 30.0% |
| GAAAACCCTAAATATTCGTT+TGG | + | chr3_1:89406511-89406530 | Msa0385710:CDS | 30.0% | |
| TTCCTCCAAACGAATATTTA+GGG | - | chr3_1:89406519-89406538 | None:intergenic | 30.0% | |
| ATTCCTCCAAACGAATATTT+AGG | - | chr3_1:89406520-89406539 | None:intergenic | 30.0% | |
| ATCATCAAATACATTGACGT+TGG | - | chr3_1:89406674-89406693 | None:intergenic | 30.0% | |
| !! | TAATAACCAAAGTGCTGAAA+TGG | - | chr3_1:89406839-89406858 | None:intergenic | 30.0% |
| !!! | TAAGTGACCGAGTTTTTTTT+AGG | + | chr3_1:89406857-89406876 | Msa0385710:intron | 30.0% |
| TCACTTGCCTAAAAAAAACT+CGG | - | chr3_1:89406867-89406886 | None:intergenic | 30.0% | |
| CTTTAGTACATCTAATTCCA+CGG | + | chr3_1:89407031-89407050 | Msa0385710:intron | 30.0% | |
| AATAAGTTTGACAAAAGGGA+GGG | - | chr3_1:89407287-89407306 | None:intergenic | 30.0% | |
| !!! | ACTCGGACTAGTTTATATTT+TGG | - | chr3_1:89407385-89407404 | None:intergenic | 30.0% |
| TCAAGTAACTTACTATCAGT+TGG | - | chr3_1:89407495-89407514 | None:intergenic | 30.0% | |
| CAAGTAAGAGACTTAAAATC+AGG | + | chr3_1:89407535-89407554 | Msa0385710:CDS | 30.0% | |
| ! | CAGTTTATGATATTTCTGCA+CGG | + | chr3_1:89407593-89407612 | Msa0385710:CDS | 30.0% |
| CAAATACTGGAATTCAAAAC+AGG | - | chr3_1:89407817-89407836 | None:intergenic | 30.0% | |
| !! | CTGTTTTGAATTCCAGTATT+TGG | + | chr3_1:89407815-89407834 | Msa0385710:intron | 30.0% |
| ! | ATGTGGAAAGCACATAAAAA+AGG | - | chr3_1:89407958-89407977 | None:intergenic | 30.0% |
| ! | TTTTCGCAACAATGAACATT+GGG | - | chr3_1:89408018-89408037 | None:intergenic | 30.0% |
| ! | TTTTTCGCAACAATGAACAT+TGG | - | chr3_1:89408019-89408038 | None:intergenic | 30.0% |
| AATGTTCATTGTTGCGAAAA+AGG | + | chr3_1:89408018-89408037 | Msa0385710:CDS | 30.0% | |
| ! | TGCGAAAAAGGATATTGTTT+TGG | + | chr3_1:89408030-89408049 | Msa0385710:CDS | 30.0% |
| !!! | GCAATTCTGTTTTTTAGCAA+GGG | - | chr3_1:89408224-89408243 | None:intergenic | 30.0% |
| !!! | AGCAATTCTGTTTTTTAGCA+AGG | - | chr3_1:89408225-89408244 | None:intergenic | 30.0% |
| !!! | TGCTTTGTTTTTCCATTTCT+AGG | + | chr3_1:89408376-89408395 | Msa0385710:intron | 30.0% |
| TAAATAGAGAGCTGTTGAAT+GGG | - | chr3_1:89408410-89408429 | None:intergenic | 30.0% | |
| ATAAATAGAGAGCTGTTGAA+TGG | - | chr3_1:89408411-89408430 | None:intergenic | 30.0% | |
| ACAAACCTATGGTAAATTTG+TGG | - | chr3_1:89408525-89408544 | None:intergenic | 30.0% | |
| CATTTCTTTAAACAAGCTAC+TGG | - | chr3_1:89408563-89408582 | None:intergenic | 30.0% | |
| CTGATTCTTAATTGTTACTC+AGG | + | chr3_1:89408590-89408609 | Msa0385710:intron | 30.0% | |
| !! | TAATCAAGTGAGTTTTATCC+TGG | + | chr3_1:89408669-89408688 | Msa0385710:intron | 30.0% |
| ! | TTATTAGTAAGTGCTGTTAG+TGG | + | chr3_1:89408781-89408800 | Msa0385710:intron | 30.0% |
| TAGATGCATAACAGAGAAAT+AGG | + | chr3_1:89408916-89408935 | Msa0385710:intron | 30.0% | |
| ! | GAGATATGATTTTCACTTAC+TGG | - | chr3_1:89408962-89408981 | None:intergenic | 30.0% |
| TTAATCAAAGGTCCAACAAA+GGG | - | chr3_1:89409010-89409029 | None:intergenic | 30.0% | |
| ATTAATCAAAGGTCCAACAA+AGG | - | chr3_1:89409011-89409030 | None:intergenic | 30.0% | |
| TCAAAATGGACATGATATCA+TGG | - | chr3_1:89409072-89409091 | None:intergenic | 30.0% | |
| CTCAAAATACGAGGATAAAA+TGG | - | chr3_1:89409473-89409492 | None:intergenic | 30.0% | |
| ! | CATTTTATCCTCGTATTTTG+AGG | + | chr3_1:89409471-89409490 | Msa0385710:intron | 30.0% |
| ATCCAAACAATAAAAACCAC+AGG | - | chr3_1:89409581-89409600 | None:intergenic | 30.0% | |
| !!! | TTGTTTGGATATGTTTTGGT+AGG | + | chr3_1:89409591-89409610 | Msa0385710:intron | 30.0% |
| AACAAATAGTTGTCACATAG+GGG | + | chr3_1:89409896-89409915 | Msa0385710:intron | 30.0% | |
| TAGAGAGAAGAAAAGGAAAA+GGG | - | chr3_1:89409991-89410010 | None:intergenic | 30.0% | |
| ATAGAGAGAAGAAAAGGAAA+AGG | - | chr3_1:89409992-89410011 | None:intergenic | 30.0% | |
| ! | CAAATTATAGGGTTTGTTTG+GGG | - | chr3_1:89410082-89410101 | None:intergenic | 30.0% |
| ! | GACAAATTATAGGGTTTGTT+TGG | - | chr3_1:89410084-89410103 | None:intergenic | 30.0% |
| AGTCAATGCGACAAATTATA+GGG | - | chr3_1:89410093-89410112 | None:intergenic | 30.0% | |
| ATGGTAAGAATTATGGTTTC+AGG | + | chr3_1:89410151-89410170 | Msa0385710:intron | 30.0% | |
| ! | CAAAAATGTTAGAAGCACAT+TGG | + | chr3_1:89410270-89410289 | Msa0385710:CDS | 30.0% |
| TATATATACTGTGATCGAGT+GGG | - | chr3_1:89410307-89410326 | None:intergenic | 30.0% | |
| TTATATATACTGTGATCGAG+TGG | - | chr3_1:89410308-89410327 | None:intergenic | 30.0% | |
| AAGCATTCCGGAATATTTAA+AGG | + | chr3_1:89410530-89410549 | Msa0385710:three_prime_UTR | 30.0% | |
| AGCATTCCGGAATATTTAAA+GGG | + | chr3_1:89410531-89410550 | Msa0385710:three_prime_UTR | 30.0% | |
| CATAGAACAGAACAATAGCA+TGG | + | chr3_1:89404843-89404862 | Msa0385710:exon | 35.0% | |
| ATATTGCAGAGGTTCGTTTA+GGG | - | chr3_1:89404872-89404891 | None:intergenic | 35.0% | |
| ACAGGTTCAATTGACGAATT+CGG | + | chr3_1:89405100-89405119 | Msa0385710:CDS | 35.0% | |
| !! | TACTTATCGGCTCTTCTAAA+AGG | - | chr3_1:89405203-89405222 | None:intergenic | 35.0% |
| !! | GTTTGGTTTGAGAGAACTTA+TGG | + | chr3_1:89405402-89405421 | Msa0385710:intron | 35.0% |
| GCTCAATATGTCTATCCAAA+AGG | - | chr3_1:89405529-89405548 | None:intergenic | 35.0% | |
| ! | GACATTTCATATGTTGCTTC+CGG | + | chr3_1:89405599-89405618 | Msa0385710:intron | 35.0% |
| ! | CATTTTACAGGATAGTTTGG+AGG | + | chr3_1:89405772-89405791 | Msa0385710:intron | 35.0% |
| !! | TATAAAAGTGTTGCGTATCG+AGG | + | chr3_1:89405928-89405947 | Msa0385710:CDS | 35.0% |
| TGAGCCTGATACTTTATCAT+GGG | + | chr3_1:89405961-89405980 | Msa0385710:CDS | 35.0% | |
| ATTGCAAAACATGCACTTTC+CGG | - | chr3_1:89406168-89406187 | None:intergenic | 35.0% | |
| TGTATGATTGTTCTTGGTAC+TGG | + | chr3_1:89406309-89406328 | Msa0385710:intron | 35.0% | |
| !! | CTGCTTTTATACTGTAGAGA+TGG | + | chr3_1:89406379-89406398 | Msa0385710:intron | 35.0% |
| ! | AATCAGGAGATATTTTGTGC+TGG | + | chr3_1:89406479-89406498 | Msa0385710:CDS | 35.0% |
| AACCCTAAATATTCGTTTGG+AGG | + | chr3_1:89406514-89406533 | Msa0385710:CDS | 35.0% | |
| GAGGAATTGTTACTGATGAT+GGG | + | chr3_1:89406533-89406552 | Msa0385710:CDS | 35.0% | |
| !! | AATTGTTACTGATGATGGGA+AGG | + | chr3_1:89406537-89406556 | Msa0385710:CDS | 35.0% |
| TGCCTCCTAGAAAACAAATA+CGG | - | chr3_1:89406717-89406736 | None:intergenic | 35.0% | |
| TCTTGCTTAGTAATCTCCTA+TGG | + | chr3_1:89406771-89406790 | Msa0385710:intron | 35.0% | |
| CTTGCTTAGTAATCTCCTAT+GGG | + | chr3_1:89406772-89406791 | Msa0385710:intron | 35.0% | |
| TAACTTCCATTTCAGCACTT+TGG | + | chr3_1:89406830-89406849 | Msa0385710:intron | 35.0% | |
| TATGGCAACACTTCAAGAAA+GGG | - | chr3_1:89406940-89406959 | None:intergenic | 35.0% | |
| TTATGGCAACACTTCAAGAA+AGG | - | chr3_1:89406941-89406960 | None:intergenic | 35.0% | |
| TGTGATGAATATATCTTCCG+TGG | - | chr3_1:89407051-89407070 | None:intergenic | 35.0% | |
| TACATAACAGTGAGTTGCAA+AGG | - | chr3_1:89407094-89407113 | None:intergenic | 35.0% | |
| !! | CAGTAGTACAGTTTGTTAAC+TGG | - | chr3_1:89407211-89407230 | None:intergenic | 35.0% |
| ATAAGTTTGACAAAAGGGAG+GGG | - | chr3_1:89407286-89407305 | None:intergenic | 35.0% | |
| CAATAAGTTTGACAAAAGGG+AGG | - | chr3_1:89407288-89407307 | None:intergenic | 35.0% | |
| TAAACTAGTCCGAGTAGATT+TGG | + | chr3_1:89407390-89407409 | Msa0385710:CDS | 35.0% | |
| TTGGTTTCTCCAAATCTACT+CGG | - | chr3_1:89407402-89407421 | None:intergenic | 35.0% | |
| ATTTGGAGAAACCAAACACA+TGG | + | chr3_1:89407407-89407426 | Msa0385710:CDS | 35.0% | |
| TTTGGAGAAACCAAACACAT+GGG | + | chr3_1:89407408-89407427 | Msa0385710:CDS | 35.0% | |
| TAAACTGTGCCAATGTCAAT+TGG | - | chr3_1:89407580-89407599 | None:intergenic | 35.0% | |
| TCACGTAATATCTTCAGATC+AGG | - | chr3_1:89407703-89407722 | None:intergenic | 35.0% | |
| !! | TACCTGATTGACTTGAAACT+CGG | - | chr3_1:89407752-89407771 | None:intergenic | 35.0% |
| AAACAGGCAATTTAACAGTG+AGG | - | chr3_1:89407801-89407820 | None:intergenic | 35.0% | |
| ! | CCTGTTTTCATACCAAATAC+TGG | - | chr3_1:89407830-89407849 | None:intergenic | 35.0% |
| CCAGTATTTGGTATGAAAAC+AGG | + | chr3_1:89407827-89407846 | Msa0385710:intron | 35.0% | |
| TTGAATTCCTTTAGTCTGCA+TGG | + | chr3_1:89407883-89407902 | Msa0385710:intron | 35.0% | |
| TGAATTCCTTTAGTCTGCAT+GGG | + | chr3_1:89407884-89407903 | Msa0385710:intron | 35.0% | |
| ! | TGTATCATTGTTGCTTGACT+TGG | + | chr3_1:89407932-89407951 | Msa0385710:intron | 35.0% |
| TTATGTGCTTTCCACATTTC+AGG | + | chr3_1:89407961-89407980 | Msa0385710:intron | 35.0% | |
| ATCTTGGTACCATCTTTACT+GGG | - | chr3_1:89407995-89408014 | None:intergenic | 35.0% | |
| AACAATGAACATTGGGATCT+TGG | - | chr3_1:89408011-89408030 | None:intergenic | 35.0% | |
| CATATCCATATAACAGACAC+GGG | - | chr3_1:89408066-89408085 | None:intergenic | 35.0% | |
| CCATATCCATATAACAGACA+CGG | - | chr3_1:89408067-89408086 | None:intergenic | 35.0% | |
| TGTCTGTTATATGGATATGG+TGG | + | chr3_1:89408067-89408086 | Msa0385710:CDS | 35.0% | |
| ! | TTTGATGACTTCATTTCTGC+TGG | + | chr3_1:89408244-89408263 | Msa0385710:CDS | 35.0% |
| TCTCTGTACAGATAAAGGAA+AGG | - | chr3_1:89408446-89408465 | None:intergenic | 35.0% | |
| ACAAAGAGGAAGAGTTTCAT+TGG | + | chr3_1:89408645-89408664 | Msa0385710:CDS | 35.0% | |
| TATCCTGGCCTGAAATATTA+AGG | + | chr3_1:89408684-89408703 | Msa0385710:intron | 35.0% | |
| TATCCTTAATATTTCAGGCC+AGG | - | chr3_1:89408690-89408709 | None:intergenic | 35.0% | |
| CATATGGGAATTGTTCAAAC+CGG | - | chr3_1:89408827-89408846 | None:intergenic | 35.0% | |
| GTTTGAACAATTCCCATATG+TGG | + | chr3_1:89408827-89408846 | Msa0385710:intron | 35.0% | |
| CTATTGTTAATCACCACCAT+TGG | + | chr3_1:89409045-89409064 | Msa0385710:intron | 35.0% | |
| ! | AGAAGAGATAGTGTCATTGT+TGG | + | chr3_1:89409166-89409185 | Msa0385710:intron | 35.0% |
| GTGGCGTAAGAAAATAACTT+TGG | - | chr3_1:89409193-89409212 | None:intergenic | 35.0% | |
| TATTTCTTAAGGGGAATGGT+TGG | + | chr3_1:89409364-89409383 | Msa0385710:intron | 35.0% | |
| TTATTTCCTGGCATAAGTTG+AGG | + | chr3_1:89409437-89409456 | Msa0385710:intron | 35.0% | |
| AAACATGGTTGAGAAACAAC+AGG | - | chr3_1:89409533-89409552 | None:intergenic | 35.0% | |
| GCAATCTGTCTTTCAAAACA+TGG | - | chr3_1:89409548-89409567 | None:intergenic | 35.0% | |
| ! | CTCCTGTGGTTTTTATTGTT+TGG | + | chr3_1:89409576-89409595 | Msa0385710:intron | 35.0% |
| AATAGCTTCAATGAGTGTAG+TGG | - | chr3_1:89409767-89409786 | None:intergenic | 35.0% | |
| ACTACACTCATTGAAGCTAT+TGG | + | chr3_1:89409766-89409785 | Msa0385710:CDS | 35.0% | |
| GTTGCAAGTAACAGAATAAG+TGG | + | chr3_1:89409855-89409874 | Msa0385710:intron | 35.0% | |
| ACAAATAGTTGTCACATAGG+GGG | + | chr3_1:89409897-89409916 | Msa0385710:intron | 35.0% | |
| AGAGAGATAGAGAGAAGAAA+AGG | - | chr3_1:89409998-89410017 | None:intergenic | 35.0% | |
| CAGTCAATGCGACAAATTAT+AGG | - | chr3_1:89410094-89410113 | None:intergenic | 35.0% | |
| AAATTTCTTTCAGGCAATGC+CGG | + | chr3_1:89410338-89410357 | Msa0385710:three_prime_UTR | 35.0% | |
| !! | AGAGAAATGAATTGGTTTGC+CGG | - | chr3_1:89410360-89410379 | None:intergenic | 35.0% |
| ATTGACGATTCATTTGGGTA+TGG | - | chr3_1:89410410-89410429 | None:intergenic | 35.0% | |
| TGGTACTTCAGAAATTGATG+CGG | + | chr3_1:89410484-89410503 | Msa0385710:three_prime_UTR | 35.0% | |
| AAATATTCCGGAATGCTTAC+AGG | - | chr3_1:89410528-89410547 | None:intergenic | 35.0% | |
| GCATGACCCTTTAAATATTC+CGG | - | chr3_1:89410540-89410559 | None:intergenic | 35.0% | |
| TTCTGTTCTATGCCGAAGAA+AGG | - | chr3_1:89404835-89404854 | None:intergenic | 40.0% | |
| GATATTGCAGAGGTTCGTTT+AGG | - | chr3_1:89404873-89404892 | None:intergenic | 40.0% | |
| TCTGTCATTGACGATTACCA+TGG | + | chr3_1:89404913-89404932 | Msa0385710:CDS | 40.0% | |
| TTGTTACCATCGATAAGGGT+CGG | - | chr3_1:89404950-89404969 | None:intergenic | 40.0% | |
| GTGGTTGTTACCATCGATAA+GGG | - | chr3_1:89404954-89404973 | None:intergenic | 40.0% | |
| AGTGGTTGTTACCATCGATA+AGG | - | chr3_1:89404955-89404974 | None:intergenic | 40.0% | |
| CTGATGCTGAAGAAGTGAAA+GGG | + | chr3_1:89405066-89405085 | Msa0385710:CDS | 40.0% | |
| !! | GAAAGGGTTTGTTGAGAAAC+AGG | + | chr3_1:89405082-89405101 | Msa0385710:CDS | 40.0% |
| !! | CTAAAAGGAGCATCATAACG+AGG | - | chr3_1:89405188-89405207 | None:intergenic | 40.0% |
| TGTGAAAGTGAAAGCAAACC+TGG | - | chr3_1:89405274-89405293 | None:intergenic | 40.0% | |
| AAACTGTTTGAGAGAGCTTC+TGG | + | chr3_1:89405559-89405578 | Msa0385710:intron | 40.0% | |
| ! | CATCTTCACTCAAGGCATTT+GGG | - | chr3_1:89405820-89405839 | None:intergenic | 40.0% |
| TACAGTTCCATCTTCACTCA+AGG | - | chr3_1:89405828-89405847 | None:intergenic | 40.0% | |
| ! | TTAGTTCCAGTGGTAGTGAT+TGG | + | chr3_1:89405900-89405919 | Msa0385710:CDS | 40.0% |
| ! | TAGTTCCAGTGGTAGTGATT+GGG | + | chr3_1:89405901-89405920 | Msa0385710:CDS | 40.0% |
| CTGAGCCTGATACTTTATCA+TGG | + | chr3_1:89405960-89405979 | Msa0385710:CDS | 40.0% | |
| ! | CTCACCCATGATAAAGTATC+AGG | - | chr3_1:89405968-89405987 | None:intergenic | 40.0% |
| !! | TAATTTCTAGCAAAGGCACG+AGG | - | chr3_1:89405996-89406015 | None:intergenic | 40.0% |
| GTTATCATGTGTCCAGCTAA+TGG | - | chr3_1:89406081-89406100 | None:intergenic | 40.0% | |
| AGCTGGACACATGATAACAA+AGG | + | chr3_1:89406083-89406102 | Msa0385710:CDS | 40.0% | |
| GCAAAGGACATCACTTACTT+GGG | - | chr3_1:89406134-89406153 | None:intergenic | 40.0% | |
| AGCAAAGGACATCACTTACT+TGG | - | chr3_1:89406135-89406154 | None:intergenic | 40.0% | |
| TCCTTTGCTCACATTCTTTC+CGG | + | chr3_1:89406146-89406165 | Msa0385710:intron | 40.0% | |
| !! | TGATTGTTCTTGGTACTGGT+AGG | + | chr3_1:89406313-89406332 | Msa0385710:intron | 40.0% |
| ATACTGTAGAGATGGAGAAG+TGG | + | chr3_1:89406387-89406406 | Msa0385710:intron | 40.0% | |
| GGAGGAATTGTTACTGATGA+TGG | + | chr3_1:89406532-89406551 | Msa0385710:CDS | 40.0% | |
| TAGAAAACAAATACGGGGCA+GGG | - | chr3_1:89406710-89406729 | None:intergenic | 40.0% | |
| CCTCCTAGAAAACAAATACG+GGG | - | chr3_1:89406715-89406734 | None:intergenic | 40.0% | |
| GCCTCCTAGAAAACAAATAC+GGG | - | chr3_1:89406716-89406735 | None:intergenic | 40.0% | |
| AGTTTCTCTACTGATCCCAT+AGG | - | chr3_1:89406790-89406809 | None:intergenic | 40.0% | |
| TCCTCCTCTATATTAGCGAA+GGG | + | chr3_1:89407179-89407198 | Msa0385710:CDS | 40.0% | |
| AGTACATCTTTGTCAGACTC+TGG | - | chr3_1:89407445-89407464 | None:intergenic | 40.0% | |
| GTTACCATTTACAGCACATG+CGG | - | chr3_1:89407473-89407492 | None:intergenic | 40.0% | |
| ! | AATTGGCAGTTGATGCAACA+AGG | - | chr3_1:89407563-89407582 | None:intergenic | 40.0% |
| CATCAACTGCCAATTGACAT+TGG | + | chr3_1:89407568-89407587 | Msa0385710:CDS | 40.0% | |
| TTTACAAGCTTTCTGTCTCC+CGG | + | chr3_1:89407643-89407662 | Msa0385710:CDS | 40.0% | |
| ! | GTTTTTGTCCCCAGTAAAGA+TGG | + | chr3_1:89407983-89408002 | Msa0385710:CDS | 40.0% |
| TCTTGGTACCATCTTTACTG+GGG | - | chr3_1:89407994-89408013 | None:intergenic | 40.0% | |
| GATCTTGGTACCATCTTTAC+TGG | - | chr3_1:89407996-89408015 | None:intergenic | 40.0% | |
| CCGTGTCTGTTATATGGATA+TGG | + | chr3_1:89408064-89408083 | Msa0385710:CDS | 40.0% | |
| TACAATGCGACTAACACTGA+AGG | - | chr3_1:89408116-89408135 | None:intergenic | 40.0% | |
| TACTGCATTGCGAATATTCG+TGG | + | chr3_1:89408160-89408179 | Msa0385710:CDS | 40.0% | |
| GATGCATAACTTTCTGGGTT+GGG | - | chr3_1:89408296-89408315 | None:intergenic | 40.0% | |
| CCTTCGATGCATAACTTTCT+GGG | - | chr3_1:89408301-89408320 | None:intergenic | 40.0% | |
| ACCTTCGATGCATAACTTTC+TGG | - | chr3_1:89408302-89408321 | None:intergenic | 40.0% | |
| AGAAAGTTATGCATCGAAGG+TGG | + | chr3_1:89408301-89408320 | Msa0385710:CDS | 40.0% | |
| ! | TGTTGGTGCTTGCATAAATC+AGG | + | chr3_1:89408342-89408361 | Msa0385710:CDS | 40.0% |
| TCAGGTCTCTGTACAGATAA+AGG | - | chr3_1:89408451-89408470 | None:intergenic | 40.0% | |
| CGGTTCCACAAATTTACCAT+AGG | + | chr3_1:89408517-89408536 | Msa0385710:CDS | 40.0% | |
| ATTGTTACTCAGGTCATGCT+TGG | + | chr3_1:89408600-89408619 | Msa0385710:intron | 40.0% | |
| TTATGGTTGTGCAGACAAAG+AGG | + | chr3_1:89408631-89408650 | Msa0385710:CDS | 40.0% | |
| GAACAATTCCCATATGTGGA+TGG | + | chr3_1:89408831-89408850 | Msa0385710:intron | 40.0% | |
| ! | CTTTTCGTCCATCCACATAT+GGG | - | chr3_1:89408842-89408861 | None:intergenic | 40.0% |
| ATGATATCATGGACCAATGG+TGG | - | chr3_1:89409061-89409080 | None:intergenic | 40.0% | |
| GACATGATATCATGGACCAA+TGG | - | chr3_1:89409064-89409083 | None:intergenic | 40.0% | |
| ATGTGTAGCTTATGAACTCC+AGG | - | chr3_1:89409109-89409128 | None:intergenic | 40.0% | |
| TAAGCTACACATGCATGTTC+TGG | + | chr3_1:89409117-89409136 | Msa0385710:intron | 40.0% | |
| TGATAATTGTCATGCGACTG+TGG | - | chr3_1:89409212-89409231 | None:intergenic | 40.0% | |
| TCAGGTAAAGCATGAAAGAC+AGG | - | chr3_1:89409302-89409321 | None:intergenic | 40.0% | |
| TAACATCGAGATTCAGCTTC+AGG | - | chr3_1:89409320-89409339 | None:intergenic | 40.0% | |
| CAGATGAACCTCAAAATACG+AGG | - | chr3_1:89409482-89409501 | None:intergenic | 40.0% | |
| !!! | CTCGTATTTTGAGGTTCATC+TGG | + | chr3_1:89409480-89409499 | Msa0385710:intron | 40.0% |
| GATTGCTTTATGAACTCCTG+TGG | + | chr3_1:89409562-89409581 | Msa0385710:intron | 40.0% | |
| ACTCACCATTGCATAATGTC+CGG | + | chr3_1:89409657-89409676 | Msa0385710:CDS | 40.0% | |
| !! | GGGTATTGAATTGACTTGTC+AGG | - | chr3_1:89409701-89409720 | None:intergenic | 40.0% |
| CCGTCAACAACATAGTTGAT+GGG | - | chr3_1:89409721-89409740 | None:intergenic | 40.0% | |
| CCCATCAACTATGTTGTTGA+CGG | + | chr3_1:89409718-89409737 | Msa0385710:CDS | 40.0% | |
| ACACTCATTGAAGCTATTGG+CGG | + | chr3_1:89409769-89409788 | Msa0385710:CDS | 40.0% | |
| CAAATAGTTGTCACATAGGG+GGG | + | chr3_1:89409898-89409917 | Msa0385710:intron | 40.0% | |
| AAATAGTTGTCACATAGGGG+GGG | + | chr3_1:89409899-89409918 | Msa0385710:intron | 40.0% | |
| AGAGAAGAAAAGGAAAAGGG+TGG | - | chr3_1:89409988-89410007 | None:intergenic | 40.0% | |
| ACTACATAGCACATACTGCA+TGG | - | chr3_1:89410044-89410063 | None:intergenic | 40.0% | |
| GTATGTGCTATGTAGTAGCT+TGG | + | chr3_1:89410048-89410067 | Msa0385710:CDS | 40.0% | |
| AGATCGATGAAACTGCTGAT+CGG | + | chr3_1:89410234-89410253 | Msa0385710:intron | 40.0% | |
| ! | TGCTGATCGGTACAGTTTTA+TGG | + | chr3_1:89410247-89410266 | Msa0385710:CDS | 40.0% |
| TTCATTTGGGTATGGTAGCA+TGG | - | chr3_1:89410402-89410421 | None:intergenic | 40.0% | |
| TTACTTGCCTGTAAGCATTC+CGG | + | chr3_1:89410518-89410537 | Msa0385710:three_prime_UTR | 40.0% | |
| CCTTTCACTTCTTCAGCATC+AGG | - | chr3_1:89405068-89405087 | None:intergenic | 45.0% | |
| CCTGATGCTGAAGAAGTGAA+AGG | + | chr3_1:89405065-89405084 | Msa0385710:CDS | 45.0% | |
| AGAGAATGTCCTGTGCTTGA+AGG | - | chr3_1:89405247-89405266 | None:intergenic | 45.0% | |
| ACAGGACATTCTCTATGTCC+AGG | + | chr3_1:89405253-89405272 | Msa0385710:CDS | 45.0% | |
| ! | AGTCGGATTTAGGGTCTGTT+TGG | + | chr3_1:89405343-89405362 | Msa0385710:intron | 45.0% |
| ! | TCATCTGATTCAGGGCCTTT+TGG | + | chr3_1:89405511-89405530 | Msa0385710:intron | 45.0% |
| TTTGGGTCAAGCAAAACCTG+TGG | - | chr3_1:89405803-89405822 | None:intergenic | 45.0% | |
| ! | CCATCTTCACTCAAGGCATT+TGG | - | chr3_1:89405821-89405840 | None:intergenic | 45.0% |
| CCAAATGCCTTGAGTGAAGA+TGG | + | chr3_1:89405818-89405837 | Msa0385710:intron | 45.0% | |
| GAGTGAAGATGCCAAGTACT+TGG | + | chr3_1:89405868-89405887 | Msa0385710:intron | 45.0% | |
| AAGCGCATAAGCCAAGTACT+TGG | - | chr3_1:89405882-89405901 | None:intergenic | 45.0% | |
| ATCATGTGTCCAGCTAATGG+AGG | - | chr3_1:89406078-89406097 | None:intergenic | 45.0% | |
| TCCGGAAAGAATGTGAGCAA+AGG | - | chr3_1:89406150-89406169 | None:intergenic | 45.0% | |
| ATGGAGAAGTGGTAGATGCT+GGG | + | chr3_1:89406398-89406417 | Msa0385710:CDS | 45.0% | |
| !! | TTTTTGGGCACGGATCAATC+AGG | + | chr3_1:89406463-89406482 | Msa0385710:CDS | 45.0% |
| CTAGAAAACAAATACGGGGC+AGG | - | chr3_1:89406711-89406730 | None:intergenic | 45.0% | |
| !! | CTGCCCCGTATTTGTTTTCT+AGG | + | chr3_1:89406709-89406728 | Msa0385710:intron | 45.0% |
| !! | CCCCGTATTTGTTTTCTAGG+AGG | + | chr3_1:89406712-89406731 | Msa0385710:intron | 45.0% |
| CTCCTCCTCTATATTAGCGA+AGG | + | chr3_1:89407178-89407197 | Msa0385710:CDS | 45.0% | |
| ACCCTTCGCTAATATAGAGG+AGG | - | chr3_1:89407183-89407202 | None:intergenic | 45.0% | |
| CACACCCTTCGCTAATATAG+AGG | - | chr3_1:89407186-89407205 | None:intergenic | 45.0% | |
| AGAACATCAGCCCATGTGTT+TGG | - | chr3_1:89407421-89407440 | None:intergenic | 45.0% | |
| ! | TTGCACTGATAGACGATACC+GGG | - | chr3_1:89407664-89407683 | None:intergenic | 45.0% |
| ! | GTTGCACTGATAGACGATAC+CGG | - | chr3_1:89407665-89407684 | None:intergenic | 45.0% |
| TATCGTCTATCAGTGCAACC+TGG | + | chr3_1:89407666-89407685 | Msa0385710:CDS | 45.0% | |
| ATCGTCTATCAGTGCAACCT+GGG | + | chr3_1:89407667-89407686 | Msa0385710:CDS | 45.0% | |
| TTACGTGAAATTGCAGTCCC+TGG | + | chr3_1:89407715-89407734 | Msa0385710:CDS | 45.0% | |
| TACGTGAAATTGCAGTCCCT+GGG | + | chr3_1:89407716-89407735 | Msa0385710:CDS | 45.0% | |
| ! | CTCCGAGTTTCAAGTCAATC+AGG | + | chr3_1:89407747-89407766 | Msa0385710:CDS | 45.0% |
| GGGGACAAAAACCTGAAATG+TGG | - | chr3_1:89407975-89407994 | None:intergenic | 45.0% | |
| TCACACCCGTGTCTGTTATA+TGG | + | chr3_1:89408058-89408077 | Msa0385710:CDS | 45.0% | |
| ATGCGACTAACACTGAAGGA+TGG | - | chr3_1:89408112-89408131 | None:intergenic | 45.0% | |
| TGCATTGCGAATATTCGTGG+TGG | + | chr3_1:89408163-89408182 | Msa0385710:CDS | 45.0% | |
| ATTGCGAATATTCGTGGTGG+TGG | + | chr3_1:89408166-89408185 | Msa0385710:CDS | 45.0% | |
| !! | ATTCGTGGTGGTGGAGAATA+TGG | + | chr3_1:89408175-89408194 | Msa0385710:CDS | 45.0% |
| !! | TTCGTGGTGGTGGAGAATAT+GGG | + | chr3_1:89408176-89408195 | Msa0385710:CDS | 45.0% |
| GTGGAGAATATGGGGAAGAA+TGG | + | chr3_1:89408185-89408204 | Msa0385710:CDS | 45.0% | |
| TGGTGAATACCTTGTGTCCA+CGG | + | chr3_1:89408264-89408283 | Msa0385710:CDS | 45.0% | |
| CGATGCATAACTTTCTGGGT+TGG | - | chr3_1:89408297-89408316 | None:intergenic | 45.0% | |
| CCCAGAAAGTTATGCATCGA+AGG | + | chr3_1:89408298-89408317 | Msa0385710:CDS | 45.0% | |
| !! | AGCAATGGTGGACTTCTTGT+TGG | + | chr3_1:89408325-89408344 | Msa0385710:CDS | 45.0% |
| GTGCTTGCATAAATCAGGTC+TGG | + | chr3_1:89408347-89408366 | Msa0385710:intron | 45.0% | |
| ! | ATTGGCTCATGTTGGCGTTA+TGG | + | chr3_1:89408486-89408505 | Msa0385710:CDS | 45.0% |
| TTGGCGTTATGGACATGCTA+CGG | + | chr3_1:89408497-89408516 | Msa0385710:CDS | 45.0% | |
| CATGCTTGGACCTCAGATTA+TGG | + | chr3_1:89408614-89408633 | Msa0385710:CDS | 45.0% | |
| GTCTGCACAACCATAATCTG+AGG | - | chr3_1:89408627-89408646 | None:intergenic | 45.0% | |
| ! | GTAAGTGCTGTTAGTGGAAG+CGG | + | chr3_1:89408787-89408806 | Msa0385710:intron | 45.0% |
| ! | TAAGTGCTGTTAGTGGAAGC+GGG | + | chr3_1:89408788-89408807 | Msa0385710:intron | 45.0% |
| TGTTAGTGGAAGCGGGATAA+TGG | + | chr3_1:89408795-89408814 | Msa0385710:intron | 45.0% | |
| ! | CCTTTTCGTCCATCCACATA+TGG | - | chr3_1:89408843-89408862 | None:intergenic | 45.0% |
| CCATATGTGGATGGACGAAA+AGG | + | chr3_1:89408840-89408859 | Msa0385710:intron | 45.0% | |
| CTGTGAGACAATCCCTTTGT+TGG | + | chr3_1:89408995-89409014 | Msa0385710:intron | 45.0% | |
| TCTTAAGGGGAATGGTTGGT+TGG | + | chr3_1:89409368-89409387 | Msa0385710:intron | 45.0% | |
| TTCTAGCAGCATAGACTGCA+TGG | + | chr3_1:89409405-89409424 | Msa0385710:intron | 45.0% | |
| GAGAATCCTCAACTTATGCC+AGG | - | chr3_1:89409446-89409465 | None:intergenic | 45.0% | |
| GCCGTCAACAACATAGTTGA+TGG | - | chr3_1:89409722-89409741 | None:intergenic | 45.0% | |
| TTGAAGCTATTGGCGGTTAG+TGG | + | chr3_1:89409776-89409795 | Msa0385710:intron | 45.0% | |
| TGAAGCTATTGGCGGTTAGT+GGG | + | chr3_1:89409777-89409796 | Msa0385710:intron | 45.0% | |
| ! | ATGAGTTTTTCCTCCCACAG+TGG | - | chr3_1:89409947-89409966 | None:intergenic | 45.0% |
| ACTGCATGGTCTGCAACAAT+TGG | - | chr3_1:89410030-89410049 | None:intergenic | 45.0% | |
| ATTGACTGCAAAGCTGGACA+TGG | + | chr3_1:89410106-89410125 | Msa0385710:CDS | 45.0% | |
| GGGTCGTCCAACAAAGAAAA+TGG | + | chr3_1:89410132-89410151 | Msa0385710:CDS | 45.0% | |
| !!! | AAAATTTAAGTTAAATAAAT+TGG | - | chr3_1:89405463-89405482 | None:intergenic | 5.0% |
| AAATCGCCGACCCTTATCGA+TGG | + | chr3_1:89404941-89404960 | Msa0385710:CDS | 50.0% | |
| GTGCTTGAAGGCCAGTGTTA+TGG | - | chr3_1:89405235-89405254 | None:intergenic | 50.0% | |
| !! | TAACACTGGCCTTCAAGCAC+AGG | + | chr3_1:89405235-89405254 | Msa0385710:CDS | 50.0% |
| TAGTTTGGAGGGAGAACCAC+AGG | + | chr3_1:89405784-89405803 | Msa0385710:intron | 50.0% | |
| GCTTATGCGCTTAGTTCCAG+TGG | + | chr3_1:89405890-89405909 | Msa0385710:CDS | 50.0% | |
| !! | CTTACTTGGGTGCTGGATAG+CGG | - | chr3_1:89406121-89406140 | None:intergenic | 50.0% |
| GACATCACTTACTTGGGTGC+TGG | - | chr3_1:89406128-89406147 | None:intergenic | 50.0% | |
| GATGGAGAAGTGGTAGATGC+TGG | + | chr3_1:89406397-89406416 | Msa0385710:CDS | 50.0% | |
| GAGTCCGCATGTGCTGTAAA+TGG | + | chr3_1:89407466-89407485 | Msa0385710:CDS | 50.0% | |
| TGCACGGCGTGAAGATAATG+TGG | + | chr3_1:89407609-89407628 | Msa0385710:CDS | 50.0% | |
| TATCAGTGCAACCTGGGAAC+AGG | + | chr3_1:89407673-89407692 | Msa0385710:CDS | 50.0% | |
| ATCAGTGCAACCTGGGAACA+GGG | + | chr3_1:89407674-89407693 | Msa0385710:CDS | 50.0% | |
| ACAGTGAGGACATGCAGCAT+CGG | - | chr3_1:89407787-89407806 | None:intergenic | 50.0% | |
| CCTGTACCCATGCAGACTAA+AGG | - | chr3_1:89407893-89407912 | None:intergenic | 50.0% | |
| CCTTTAGTCTGCATGGGTAC+AGG | + | chr3_1:89407890-89407909 | Msa0385710:intron | 50.0% | |
| !! | TCGTGGTGGTGGAGAATATG+GGG | + | chr3_1:89408177-89408196 | Msa0385710:CDS | 50.0% |
| GGGGAAGAATGGCATAAAGC+AGG | + | chr3_1:89408196-89408215 | Msa0385710:CDS | 50.0% | |
| GGTGAATACCTTGTGTCCAC+GGG | + | chr3_1:89408265-89408284 | Msa0385710:CDS | 50.0% | |
| TGCATCGAAGGTGGAAGCAA+TGG | + | chr3_1:89408310-89408329 | Msa0385710:CDS | 50.0% | |
| ATCGAAGGTGGAAGCAATGG+TGG | + | chr3_1:89408313-89408332 | Msa0385710:CDS | 50.0% | |
| ! | TGGGAAGTGTGGCCTAGAAA+TGG | - | chr3_1:89408391-89408410 | None:intergenic | 50.0% |
| GAGCTGTTGAATGGGAAGTG+TGG | - | chr3_1:89408402-89408421 | None:intergenic | 50.0% | |
| GTACAGAGACCTGAGCTCTT+TGG | + | chr3_1:89408457-89408476 | Msa0385710:intron | 50.0% | |
| AATGCACAGCCAAAGAGCTC+AGG | - | chr3_1:89408469-89408488 | None:intergenic | 50.0% | |
| TGAGCTCTTTGGCTGTGCAT+TGG | + | chr3_1:89408468-89408487 | Msa0385710:CDS | 50.0% | |
| TTGTCAGGATGCTGTTCCCA+TGG | - | chr3_1:89409686-89409705 | None:intergenic | 50.0% | |
| TCATTCTCGTGTGACCACTG+TGG | + | chr3_1:89409930-89409949 | Msa0385710:intron | 50.0% | |
| CATTCTCGTGTGACCACTGT+GGG | + | chr3_1:89409931-89409950 | Msa0385710:intron | 50.0% | |
| !! | TGTCGCATTGACTGCAAAGC+TGG | + | chr3_1:89410100-89410119 | Msa0385710:CDS | 50.0% |
| CGAACCTCTGCAATATCCCG+CGG | + | chr3_1:89404876-89404895 | Msa0385710:CDS | 55.0% | |
| AGTCGCCCAATCACTACCAC+TGG | - | chr3_1:89405909-89405928 | None:intergenic | 55.0% | |
| ACTCGGAGCGATCAAACCCA+GGG | - | chr3_1:89407735-89407754 | None:intergenic | 55.0% | |
| AACTCGGAGCGATCAAACCC+AGG | - | chr3_1:89407736-89407755 | None:intergenic | 55.0% | |
| GGGTATAACCCGTGGACACA+AGG | - | chr3_1:89408276-89408295 | None:intergenic | 55.0% | |
| ! | TCTGGGTTGGGTATAACCCG+TGG | - | chr3_1:89408284-89408303 | None:intergenic | 55.0% |
| !! | GGCTGTGCATTGGCTCATGT+TGG | + | chr3_1:89408478-89408497 | Msa0385710:CDS | 55.0% |
| ! | AGTGGAAGCGGGATAATGGC+AGG | + | chr3_1:89408799-89408818 | Msa0385710:intron | 55.0% |
| ! | GTGGAAGCGGGATAATGGCA+GGG | + | chr3_1:89408800-89408819 | Msa0385710:intron | 55.0% |
| GGTCGCCGGACATTATGCAA+TGG | - | chr3_1:89409665-89409684 | None:intergenic | 55.0% | |
| TGCATAATGTCCGGCGACCA+TGG | + | chr3_1:89409666-89409685 | Msa0385710:CDS | 55.0% | |
| GCATAATGTCCGGCGACCAT+GGG | + | chr3_1:89409667-89409686 | Msa0385710:CDS | 55.0% | |
| GTTGTCACATAGGGGGGGAT+AGG | + | chr3_1:89409904-89409923 | Msa0385710:intron | 55.0% | |
| GGGTGGTAAATTGCGACGAC+TGG | - | chr3_1:89409971-89409990 | None:intergenic | 55.0% | |
| CTGCAAAGCTGGACATGGAG+CGG | + | chr3_1:89410111-89410130 | Msa0385710:CDS | 55.0% | |
| TGCAAAGCTGGACATGGAGC+GGG | + | chr3_1:89410112-89410131 | Msa0385710:CDS | 55.0% | |
| !! | GGTCGGCGATTTTGACGCCA+TGG | - | chr3_1:89404933-89404952 | None:intergenic | 60.0% |
| GATCAGGAGTCCCTGTTCCC+AGG | - | chr3_1:89407687-89407706 | None:intergenic | 60.0% | |
| ! | AGCGGGATAATGGCAGGGTC+CGG | + | chr3_1:89408805-89408824 | Msa0385710:intron | 60.0% |
| GATGCTGTTCCCATGGTCGC+CGG | - | chr3_1:89409679-89409698 | None:intergenic | 60.0% | |
| TCTCGTGTGACCACTGTGGG+AGG | + | chr3_1:89409934-89409953 | Msa0385710:intron | 60.0% | |
| CGAGCCGCGGGATATTGCAG+AGG | - | chr3_1:89404883-89404902 | None:intergenic | 65.0% | |
| AGAGTCGTCTCTGCGAGCCG+CGG | - | chr3_1:89404896-89404915 | None:intergenic | 65.0% | |
| GAGTCGTCTCTGCGAGCCGC+GGG | - | chr3_1:89404895-89404914 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 89404756 | 89410626 | 89404756 | ID=Msa0385710;Name=Msa0385710 |
| chr3_1 | mRNA | 89404756 | 89410626 | 89404756 | ID=Msa0385710-mRNA-1;Parent=Msa0385710;Name=Msa0385710-mRNA-1;_AED=0.08;_eAED=0.08;_QI=106|0.90|0.91|1|0.90|0.91|12|325|694 |
| chr3_1 | exon | 89404756 | 89404962 | 89404756 | ID=Msa0385710-mRNA-1:exon:24340;Parent=Msa0385710-mRNA-1 |
| chr3_1 | exon | 89405055 | 89405274 | 89405055 | ID=Msa0385710-mRNA-1:exon:24341;Parent=Msa0385710-mRNA-1 |
| chr3_1 | exon | 89405884 | 89405982 | 89405884 | ID=Msa0385710-mRNA-1:exon:24342;Parent=Msa0385710-mRNA-1 |
| chr3_1 | exon | 89406065 | 89406135 | 89406065 | ID=Msa0385710-mRNA-1:exon:24343;Parent=Msa0385710-mRNA-1 |
| chr3_1 | exon | 89406396 | 89406558 | 89406396 | ID=Msa0385710-mRNA-1:exon:24344;Parent=Msa0385710-mRNA-1 |
| chr3_1 | exon | 89407175 | 89407768 | 89407175 | ID=Msa0385710-mRNA-1:exon:24345;Parent=Msa0385710-mRNA-1 |
| chr3_1 | exon | 89407983 | 89408363 | 89407983 | ID=Msa0385710-mRNA-1:exon:24346;Parent=Msa0385710-mRNA-1 |
| chr3_1 | exon | 89408463 | 89408538 | 89408463 | ID=Msa0385710-mRNA-1:exon:24347;Parent=Msa0385710-mRNA-1 |
| chr3_1 | exon | 89408612 | 89408675 | 89408612 | ID=Msa0385710-mRNA-1:exon:24348;Parent=Msa0385710-mRNA-1 |
| chr3_1 | exon | 89409655 | 89409790 | 89409655 | ID=Msa0385710-mRNA-1:exon:24349;Parent=Msa0385710-mRNA-1 |
| chr3_1 | exon | 89410040 | 89410153 | 89410040 | ID=Msa0385710-mRNA-1:exon:24350;Parent=Msa0385710-mRNA-1 |
| chr3_1 | exon | 89410236 | 89410626 | 89410236 | ID=Msa0385710-mRNA-1:exon:24351;Parent=Msa0385710-mRNA-1 |
| chr3_1 | five_prime_UTR | 89404756 | 89404861 | 89404756 | ID=Msa0385710-mRNA-1:five_prime_utr;Parent=Msa0385710-mRNA-1 |
| chr3_1 | CDS | 89404862 | 89404962 | 89404862 | ID=Msa0385710-mRNA-1:cds;Parent=Msa0385710-mRNA-1 |
| chr3_1 | CDS | 89405055 | 89405274 | 89405055 | ID=Msa0385710-mRNA-1:cds;Parent=Msa0385710-mRNA-1 |
| chr3_1 | CDS | 89405884 | 89405982 | 89405884 | ID=Msa0385710-mRNA-1:cds;Parent=Msa0385710-mRNA-1 |
| chr3_1 | CDS | 89406065 | 89406135 | 89406065 | ID=Msa0385710-mRNA-1:cds;Parent=Msa0385710-mRNA-1 |
| chr3_1 | CDS | 89406396 | 89406558 | 89406396 | ID=Msa0385710-mRNA-1:cds;Parent=Msa0385710-mRNA-1 |
| chr3_1 | CDS | 89407175 | 89407768 | 89407175 | ID=Msa0385710-mRNA-1:cds;Parent=Msa0385710-mRNA-1 |
| chr3_1 | CDS | 89407983 | 89408363 | 89407983 | ID=Msa0385710-mRNA-1:cds;Parent=Msa0385710-mRNA-1 |
| chr3_1 | CDS | 89408463 | 89408538 | 89408463 | ID=Msa0385710-mRNA-1:cds;Parent=Msa0385710-mRNA-1 |
| chr3_1 | CDS | 89408612 | 89408675 | 89408612 | ID=Msa0385710-mRNA-1:cds;Parent=Msa0385710-mRNA-1 |
| chr3_1 | CDS | 89409655 | 89409790 | 89409655 | ID=Msa0385710-mRNA-1:cds;Parent=Msa0385710-mRNA-1 |
| chr3_1 | CDS | 89410040 | 89410153 | 89410040 | ID=Msa0385710-mRNA-1:cds;Parent=Msa0385710-mRNA-1 |
| chr3_1 | CDS | 89410236 | 89410301 | 89410236 | ID=Msa0385710-mRNA-1:cds;Parent=Msa0385710-mRNA-1 |
| chr3_1 | three_prime_UTR | 89410302 | 89410626 | 89410302 | ID=Msa0385710-mRNA-1:three_prime_utr;Parent=Msa0385710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
