Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0479720 | XP_013462243.1 | 92.995 | 728 | 17 | 1 | 1 | 694 | 1 | 728 | 0.0 | 1398 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0479720 | sp|P48147|PPCE_HUMAN | 52.078 | 722 | 294 | 7 | 8 | 693 | 4 | 709 | 0.0 | 792 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0479720 | A0A072V4K2 | 92.995 | 728 | 17 | 1 | 1 | 694 | 1 | 728 | 0.0 | 1398 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0033110 | Msa0479720 | -0.801806 | 7.569203e-49 | -8.615850e-47 |
| Msa0186590 | Msa0479720 | 0.957545 | 2.095404e-115 | -8.615850e-47 |
| Msa0207670 | Msa0479720 | -0.802960 | 4.376735e-49 | -8.615850e-47 |
| Msa0385710 | Msa0479720 | 0.996111 | 1.573049e-223 | -8.615850e-47 |
| Msa0435600 | Msa0479720 | 0.995195 | 6.607275e-214 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0479720 | MtrunA17_Chr3g0143651 | 92.995 | 728 | 17 | 1 | 1 | 694 | 1 | 728 | 0.0 | 1398 |
| Msa0479720 | MtrunA17_Chr1g0157311 | 76.022 | 734 | 136 | 4 | 1 | 694 | 55 | 788 | 0.0 | 1144 |
| Msa0479720 | MtrunA17_Chr1g0157291 | 87.135 | 171 | 22 | 0 | 396 | 566 | 1 | 171 | 1.37e-107 | 323 |
| Msa0479720 | MtrunA17_Chr1g0157281 | 71.084 | 166 | 48 | 0 | 164 | 329 | 11 | 176 | 1.49e-76 | 243 |
| Msa0479720 | MtrunA17_Chr1g0157301 | 84.375 | 128 | 17 | 1 | 570 | 694 | 3 | 130 | 1.66e-72 | 231 |
| Msa0479720 | MtrunA17_Chr1g0212361 | 26.168 | 749 | 437 | 30 | 7 | 688 | 62 | 761 | 1.90e-49 | 185 |
| Msa0479720 | MtrunA17_Chr5g0420581 | 25.060 | 419 | 236 | 12 | 271 | 624 | 17 | 422 | 1.57e-23 | 103 |
| Msa0479720 | MtrunA17_Chr8g0374081 | 31.481 | 216 | 135 | 4 | 408 | 619 | 518 | 724 | 1.58e-21 | 99.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0479720 | AT1G76140.1 | 73.416 | 726 | 159 | 1 | 3 | 694 | 70 | 795 | 0.0 | 1139 |
| Msa0479720 | AT1G76140.2 | 73.140 | 726 | 158 | 2 | 3 | 694 | 70 | 792 | 0.0 | 1129 |
| Msa0479720 | AT1G20380.1 | 70.523 | 726 | 180 | 1 | 3 | 694 | 6 | 731 | 0.0 | 1088 |
| Msa0479720 | AT1G20380.2 | 74.692 | 569 | 144 | 0 | 126 | 694 | 1 | 569 | 0.0 | 908 |
| Msa0479720 | AT1G50380.1 | 34.259 | 324 | 191 | 6 | 370 | 689 | 399 | 704 | 2.60e-49 | 184 |
| Msa0479720 | AT1G50380.2 | 34.154 | 325 | 192 | 6 | 369 | 689 | 464 | 770 | 7.78e-49 | 184 |
| Msa0479720 | AT1G69020.1 | 27.899 | 276 | 182 | 4 | 419 | 691 | 493 | 754 | 8.91e-29 | 123 |
| Msa0479720 | AT1G69020.2 | 27.899 | 276 | 182 | 4 | 419 | 691 | 525 | 786 | 9.91e-29 | 123 |
| Msa0479720 | AT5G66960.1 | 29.596 | 223 | 144 | 4 | 419 | 638 | 536 | 748 | 3.22e-15 | 80.1 |
Find 187 sgRNAs with CRISPR-Local
Find 405 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCCTCCAAACGAATATTT+AGG | 0.117671 | 3_3:-84879359 | None:intergenic |
| ATTCGTGGTGGTGGAGAATA+TGG | 0.163223 | 3_3:+84881017 | Msa0479720:CDS |
| ACTCGGACTAGTTTATATTT+TGG | 0.203708 | 3_3:-84880224 | None:intergenic |
| ACCTTCGATGCATAACTTTC+TGG | 0.218698 | 3_3:-84881141 | None:intergenic |
| AATGGAATAAAATTTCTTTC+AGG | 0.241282 | 3_3:+84883171 | Msa0479720:three_prime_UTR |
| GATCTTGGTACCATCTTTAC+TGG | 0.241696 | 3_3:-84880835 | None:intergenic |
| AATGTTCATTGTTGCGAAAA+AGG | 0.252900 | 3_3:+84880860 | Msa0479720:CDS |
| AAGCATTCCGGAATATTTAA+AGG | 0.255157 | 3_3:+84883372 | Msa0479720:three_prime_UTR |
| AAATATTCCGGAATGCTTAC+AGG | 0.259363 | 3_3:-84883367 | None:intergenic |
| CAGTCAATGCGACAAATTAT+AGG | 0.263877 | 3_3:-84882933 | None:intergenic |
| GACAAATTATAGGGTTTGTT+TGG | 0.287994 | 3_3:-84882923 | None:intergenic |
| CATGCTTGGACCTCAGATTA+TGG | 0.294369 | 3_3:+84881456 | Msa0479720:CDS |
| TTCCTCCAAACGAATATTTA+GGG | 0.301529 | 3_3:-84879358 | None:intergenic |
| GCATGACCCTTTAAATATTC+CGG | 0.302181 | 3_3:-84883379 | None:intergenic |
| TGTGATTGTTTCGTTAAGTT+TGG | 0.304907 | 3_3:-84877989 | None:intergenic |
| TCACACCCGTGTCTGTTATA+TGG | 0.305529 | 3_3:+84880900 | Msa0479720:CDS |
| GATATTGCAGAGGTTCGTTT+AGG | 0.308709 | 3_3:-84877729 | None:intergenic |
| TACTTATCGGCTCTTCTAAA+AGG | 0.314513 | 3_3:-84878042 | None:intergenic |
| ACAAATTATAGGGTTTGTTT+GGG | 0.322529 | 3_3:-84882922 | None:intergenic |
| GAAAGGGTTTGTTGAGAAAC+AGG | 0.331155 | 3_3:+84877924 | Msa0479720:CDS |
| CAGTAGTACAGTTTGTTAAC+TGG | 0.333458 | 3_3:-84880050 | None:intergenic |
| TAAACTAGTCCGAGTAGATT+TGG | 0.336481 | 3_3:+84880232 | Msa0479720:CDS |
| TGTTGGTGCTTGCATAAATC+AGG | 0.336647 | 3_3:+84881184 | Msa0479720:CDS |
| TAAATGATTGACGATTCATT+TGG | 0.353765 | 3_3:-84883255 | None:intergenic |
| CCTTCGATGCATAACTTTCT+GGG | 0.355840 | 3_3:-84881140 | None:intergenic |
| AACAATGAACATTGGGATCT+TGG | 0.362802 | 3_3:-84880850 | None:intergenic |
| CCTTTCACTTCTTCAGCATC+AGG | 0.363467 | 3_3:-84877907 | None:intergenic |
| ATTGTACTCACAAAACATTT+AGG | 0.364515 | 3_3:+84880972 | Msa0479720:CDS |
| GATAATAAAGCATATGATAA+AGG | 0.364685 | 3_3:-84879280 | None:intergenic |
| AGTCAATGCGACAAATTATA+GGG | 0.366757 | 3_3:-84882932 | None:intergenic |
| TTAGTTCCAGTGGTAGTGAT+TGG | 0.369107 | 3_3:+84878742 | Msa0479720:CDS |
| CCGTGTCTGTTATATGGATA+TGG | 0.375864 | 3_3:+84880906 | Msa0479720:CDS |
| GGGTCGTCCAACAAAGAAAA+TGG | 0.378215 | 3_3:+84882974 | Msa0479720:CDS |
| TATTCAACAGAGAAATGAAT+TGG | 0.387722 | 3_3:-84883207 | None:intergenic |
| CTCACCCATGATAAAGTATC+AGG | 0.390599 | 3_3:-84878807 | None:intergenic |
| GTTATCATGTGTCCAGCTAA+TGG | 0.391388 | 3_3:-84878920 | None:intergenic |
| GAAAACCCTAAATATTCGTT+TGG | 0.392760 | 3_3:+84879353 | Msa0479720:CDS |
| TATCAGTGCAACCTGGGAAC+AGG | 0.393410 | 3_3:+84880515 | Msa0479720:CDS |
| GGAGGAATTGTTACTGATGA+TGG | 0.394917 | 3_3:+84879374 | Msa0479720:CDS |
| AGAACATCAGCCCATGTGTT+TGG | 0.397071 | 3_3:-84880260 | None:intergenic |
| ATCTTGGTACCATCTTTACT+GGG | 0.399846 | 3_3:-84880834 | None:intergenic |
| AGAGAAATGAATTGGTTTGC+CGG | 0.401010 | 3_3:-84883199 | None:intergenic |
| ATATTGCAGAGGTTCGTTTA+GGG | 0.403171 | 3_3:-84877728 | None:intergenic |
| AAGTTAACAAGTTAACAATA+AGG | 0.403492 | 3_3:-84883412 | None:intergenic |
| AAATGATTGACGATTCATTT+GGG | 0.405369 | 3_3:-84883254 | None:intergenic |
| TTTGATGACTTCATTTCTGC+TGG | 0.418535 | 3_3:+84881086 | Msa0479720:CDS |
| GATGCATAACTTTCTGGGTT+GGG | 0.421422 | 3_3:-84881135 | None:intergenic |
| TTACTTGCCTGTAAGCATTC+CGG | 0.422857 | 3_3:+84883360 | Msa0479720:three_prime_UTR |
| ACTACACTCATTGAAGCTAT+TGG | 0.423920 | 3_3:+84882608 | Msa0479720:CDS |
| GTACAGAGACCTGAGCTCTT+TGG | 0.425018 | 3_3:+84881299 | Msa0479720:intron |
| ATACTCGTTAATTATTATCA+AGG | 0.428268 | 3_3:-84877634 | None:intergenic |
| GAGTCCGCATGTGCTGTAAA+TGG | 0.429061 | 3_3:+84880308 | Msa0479720:CDS |
| ATGGAAGTAAAAGTACTTAT+CGG | 0.429112 | 3_3:-84878055 | None:intergenic |
| TATCAATAAGTTTGACAAAA+GGG | 0.434231 | 3_3:-84880130 | None:intergenic |
| TGAGCTCTTTGGCTGTGCAT+TGG | 0.436966 | 3_3:+84881310 | Msa0479720:CDS |
| GTGCTTGAAGGCCAGTGTTA+TGG | 0.438027 | 3_3:-84878074 | None:intergenic |
| GCCGTCAACAACATAGTTGA+TGG | 0.439546 | 3_3:-84882561 | None:intergenic |
| AGCATTCCGGAATATTTAAA+GGG | 0.440020 | 3_3:+84883373 | Msa0479720:three_prime_UTR |
| TTATCAATAAGTTTGACAAA+AGG | 0.440234 | 3_3:-84880131 | None:intergenic |
| AGTGGTTGTTACCATCGATA+AGG | 0.440898 | 3_3:-84877811 | None:intergenic |
| ACAGGTTCAATTGACGAATT+CGG | 0.443464 | 3_3:+84877942 | Msa0479720:CDS |
| ATTGGCTCATGTTGGCGTTA+TGG | 0.447955 | 3_3:+84881328 | Msa0479720:CDS |
| TGTCGCATTGACTGCAAAGC+TGG | 0.451677 | 3_3:+84882942 | Msa0479720:CDS |
| CAAGTAAGAGACTTAAAATC+AGG | 0.451702 | 3_3:+84880377 | Msa0479720:CDS |
| CTCCGAGTTTCAAGTCAATC+AGG | 0.455720 | 3_3:+84880589 | Msa0479720:CDS |
| ACAAAGAGGAAGAGTTTCAT+TGG | 0.457004 | 3_3:+84881487 | Msa0479720:CDS |
| TTCTGTTCTATGCCGAAGAA+AGG | 0.457239 | 3_3:-84877691 | None:intergenic |
| ATTGTTACTCAGGTCATGCT+TGG | 0.458027 | 3_3:+84881442 | Msa0479720:intron |
| TGCATAATGTCCGGCGACCA+TGG | 0.458324 | 3_3:+84882508 | Msa0479720:CDS |
| TCACGTAATATCTTCAGATC+AGG | 0.458498 | 3_3:-84880542 | None:intergenic |
| CGATGCATAACTTTCTGGGT+TGG | 0.460252 | 3_3:-84881136 | None:intergenic |
| GATCAGGAGTCCCTGTTCCC+AGG | 0.461520 | 3_3:-84880526 | None:intergenic |
| TAGTTCCAGTGGTAGTGATT+GGG | 0.463735 | 3_3:+84878743 | Msa0479720:CDS |
| AGAGAATGTCCTGTGCTTGA+AGG | 0.472057 | 3_3:-84878086 | None:intergenic |
| CCCATCAACTATGTTGTTGA+CGG | 0.472540 | 3_3:+84882560 | Msa0479720:CDS |
| ACAAACCTATGGTAAATTTG+TGG | 0.473864 | 3_3:-84881364 | None:intergenic |
| TAAACTGTGCCAATGTCAAT+TGG | 0.475125 | 3_3:-84880419 | None:intergenic |
| GATGGAGAAGTGGTAGATGC+TGG | 0.477294 | 3_3:+84879239 | Msa0479720:CDS |
| TTACGTGAAATTGCAGTCCC+TGG | 0.488900 | 3_3:+84880557 | Msa0479720:CDS |
| TATCGTCTATCAGTGCAACC+TGG | 0.489294 | 3_3:+84880508 | Msa0479720:CDS |
| AAATTTCTTTCAGGCAATGC+CGG | 0.492630 | 3_3:+84883180 | Msa0479720:three_prime_UTR |
| AACCCTAAATATTCGTTTGG+AGG | 0.493035 | 3_3:+84879356 | Msa0479720:CDS |
| GTGGAGAATATGGGGAAGAA+TGG | 0.493539 | 3_3:+84881027 | Msa0479720:CDS |
| TTTACAAGCTTTCTGTCTCC+CGG | 0.495034 | 3_3:+84880485 | Msa0479720:CDS |
| TGCAAAGCTGGACATGGAGC+GGG | 0.497868 | 3_3:+84882954 | Msa0479720:CDS |
| GACATCACTTACTTGGGTGC+TGG | 0.498134 | 3_3:-84878967 | None:intergenic |
| TACGTGAAATTGCAGTCCCT+GGG | 0.499626 | 3_3:+84880558 | Msa0479720:CDS |
| TTCGTGGTGGTGGAGAATAT+GGG | 0.500297 | 3_3:+84881018 | Msa0479720:CDS |
| TACTGCATTGCGAATATTCG+TGG | 0.503623 | 3_3:+84881002 | Msa0479720:CDS |
| CTGAGCCTGATACTTTATCA+TGG | 0.506192 | 3_3:+84878802 | Msa0479720:CDS |
| CACACCCTTCGCTAATATAG+AGG | 0.509249 | 3_3:-84880025 | None:intergenic |
| CGGTTCCACAAATTTACCAT+AGG | 0.509404 | 3_3:+84881359 | Msa0479720:CDS |
| GGCTGTGCATTGGCTCATGT+TGG | 0.510464 | 3_3:+84881320 | Msa0479720:CDS |
| GGGTATTGAATTGACTTGTC+AGG | 0.510562 | 3_3:-84882540 | None:intergenic |
| GTGGTTGTTACCATCGATAA+GGG | 0.513200 | 3_3:-84877810 | None:intergenic |
| AGCAATGGTGGACTTCTTGT+TGG | 0.523888 | 3_3:+84881167 | Msa0479720:CDS |
| ACAGGACATTCTCTATGTCC+AGG | 0.526352 | 3_3:+84878095 | Msa0479720:CDS |
| CTCCTCCTCTATATTAGCGA+AGG | 0.526676 | 3_3:+84880020 | Msa0479720:CDS |
| AATGCACAGCCAAAGAGCTC+AGG | 0.531544 | 3_3:-84881308 | None:intergenic |
| TGGTGAATACCTTGTGTCCA+CGG | 0.533386 | 3_3:+84881106 | Msa0479720:CDS |
| GATCACAGTATATATAAGAA+TGG | 0.534191 | 3_3:+84883153 | Msa0479720:three_prime_UTR |
| TTCATTTGGGTATGGTAGCA+TGG | 0.535902 | 3_3:-84883241 | None:intergenic |
| GATGCTGTTCCCATGGTCGC+CGG | 0.536594 | 3_3:-84882518 | None:intergenic |
| CATCAACTGCCAATTGACAT+TGG | 0.537917 | 3_3:+84880410 | Msa0479720:CDS |
| TCAAGTAACTTACTATCAGT+TGG | 0.539330 | 3_3:-84880334 | None:intergenic |
| GAGTCGTCTCTGCGAGCCGC+GGG | 0.539395 | 3_3:-84877751 | None:intergenic |
| TAACACTGGCCTTCAAGCAC+AGG | 0.543784 | 3_3:+84878077 | Msa0479720:CDS |
| ATTGACGATTCATTTGGGTA+TGG | 0.544799 | 3_3:-84883249 | None:intergenic |
| AGATGTTGAAATGTGAAAGA+AGG | 0.547877 | 3_3:-84877661 | None:intergenic |
| AATAAGTTTGACAAAAGGGA+GGG | 0.548091 | 3_3:-84880126 | None:intergenic |
| GCATAATGTCCGGCGACCAT+GGG | 0.548592 | 3_3:+84882509 | Msa0479720:CDS |
| CCCAGAAAGTTATGCATCGA+AGG | 0.551858 | 3_3:+84881140 | Msa0479720:CDS |
| AGTCGCCCAATCACTACCAC+TGG | 0.556942 | 3_3:-84878748 | None:intergenic |
| ACTCACCATTGCATAATGTC+CGG | 0.556955 | 3_3:+84882499 | Msa0479720:CDS |
| TATAAAAGTGTTGCGTATCG+AGG | 0.557739 | 3_3:+84878770 | Msa0479720:CDS |
| TCCTCCTCTATATTAGCGAA+GGG | 0.558762 | 3_3:+84880021 | Msa0479720:CDS |
| CTGATGCTGAAGAAGTGAAA+GGG | 0.561050 | 3_3:+84877908 | Msa0479720:CDS |
| CCTGATGCTGAAGAAGTGAA+AGG | 0.563636 | 3_3:+84877907 | Msa0479720:CDS |
| AGTACATCTTTGTCAGACTC+TGG | 0.565246 | 3_3:-84880284 | None:intergenic |
| GAGGAATTGTTACTGATGAT+GGG | 0.565555 | 3_3:+84879375 | Msa0479720:CDS |
| TGCATCGAAGGTGGAAGCAA+TGG | 0.565720 | 3_3:+84881152 | Msa0479720:CDS |
| TTGGTTTCTCCAAATCTACT+CGG | 0.566098 | 3_3:-84880241 | None:intergenic |
| TTGGCGTTATGGACATGCTA+CGG | 0.568137 | 3_3:+84881339 | Msa0479720:CDS |
| ACACTCATTGAAGCTATTGG+CGG | 0.569808 | 3_3:+84882611 | Msa0479720:CDS |
| ATGGAGAAGTGGTAGATGCT+GGG | 0.570455 | 3_3:+84879240 | Msa0479720:CDS |
| GTATGTGCTATGTAGTAGCT+TGG | 0.575854 | 3_3:+84882890 | Msa0479720:CDS |
| TATATATACTGTGATCGAGT+GGG | 0.576156 | 3_3:-84883146 | None:intergenic |
| TGCACGGCGTGAAGATAATG+TGG | 0.577932 | 3_3:+84880451 | Msa0479720:CDS |
| GGGGAAGAATGGCATAAAGC+AGG | 0.580032 | 3_3:+84881038 | Msa0479720:CDS |
| ATCAGTGCAACCTGGGAACA+GGG | 0.581043 | 3_3:+84880516 | Msa0479720:CDS |
| GGGTATAACCCGTGGACACA+AGG | 0.581061 | 3_3:-84881115 | None:intergenic |
| GTTGCACTGATAGACGATAC+CGG | 0.582502 | 3_3:-84880504 | None:intergenic |
| AGAGTCGTCTCTGCGAGCCG+CGG | 0.586403 | 3_3:-84877752 | None:intergenic |
| CCATATCCATATAACAGACA+CGG | 0.588695 | 3_3:-84880906 | None:intergenic |
| ATAAGTTTGACAAAAGGGAG+GGG | 0.588761 | 3_3:-84880125 | None:intergenic |
| CATAGAACAGAACAATAGCA+TGG | 0.589976 | 3_3:+84877702 | Msa0479720:exon |
| TCGTGGTGGTGGAGAATATG+GGG | 0.590290 | 3_3:+84881019 | Msa0479720:CDS |
| GGTGAATACCTTGTGTCCAC+GGG | 0.591999 | 3_3:+84881107 | Msa0479720:CDS |
| CCGTCAACAACATAGTTGAT+GGG | 0.594747 | 3_3:-84882560 | None:intergenic |
| CTGCAAAGCTGGACATGGAG+CGG | 0.598830 | 3_3:+84882953 | Msa0479720:CDS |
| AACTCGGAGCGATCAAACCC+AGG | 0.600975 | 3_3:-84880575 | None:intergenic |
| CTTACTTGGGTGCTGGATAG+CGG | 0.601152 | 3_3:-84878960 | None:intergenic |
| TTGTCAGGATGCTGTTCCCA+TGG | 0.603618 | 3_3:-84882525 | None:intergenic |
| ATACTGTAGAGATGGAGAAG+TGG | 0.604745 | 3_3:+84879229 | Msa0479720:intron |
| ATTGACTGCAAAGCTGGACA+TGG | 0.604773 | 3_3:+84882948 | Msa0479720:CDS |
| GCTTATGCGCTTAGTTCCAG+TGG | 0.605231 | 3_3:+84878732 | Msa0479720:CDS |
| TTATATATACTGTGATCGAG+TGG | 0.610417 | 3_3:-84883147 | None:intergenic |
| CAATAAGTTTGACAAAAGGG+AGG | 0.615544 | 3_3:-84880127 | None:intergenic |
| CAGTTTATGATATTTCTGCA+CGG | 0.617175 | 3_3:+84880435 | Msa0479720:CDS |
| CAAATTATAGGGTTTGTTTG+GGG | 0.617870 | 3_3:-84882921 | None:intergenic |
| ATTGCGAATATTCGTGGTGG+TGG | 0.619449 | 3_3:+84881008 | Msa0479720:CDS |
| GTTACCATTTACAGCACATG+CGG | 0.620959 | 3_3:-84880312 | None:intergenic |
| AGAAAGTTATGCATCGAAGG+TGG | 0.621187 | 3_3:+84881143 | Msa0479720:CDS |
| ATCGTCTATCAGTGCAACCT+GGG | 0.624634 | 3_3:+84880509 | Msa0479720:CDS |
| TTGTTACCATCGATAAGGGT+CGG | 0.625434 | 3_3:-84877806 | None:intergenic |
| AATTGGCAGTTGATGCAACA+AGG | 0.625956 | 3_3:-84880402 | None:intergenic |
| ATCGAAGGTGGAAGCAATGG+TGG | 0.626239 | 3_3:+84881155 | Msa0479720:CDS |
| TACCTGATTGACTTGAAACT+CGG | 0.626953 | 3_3:-84880591 | None:intergenic |
| TCTGGGTTGGGTATAACCCG+TGG | 0.626963 | 3_3:-84881123 | None:intergenic |
| AGATCGATGAAACTGCTGAT+CGG | 0.628843 | 3_3:+84883076 | Msa0479720:intron |
| TTGCACTGATAGACGATACC+GGG | 0.631013 | 3_3:-84880503 | None:intergenic |
| GTCTGCACAACCATAATCTG+AGG | 0.634336 | 3_3:-84881466 | None:intergenic |
| ACTACATAGCACATACTGCA+TGG | 0.637775 | 3_3:-84882883 | None:intergenic |
| TACAATGCGACTAACACTGA+AGG | 0.640264 | 3_3:-84880955 | None:intergenic |
| ATTTGGAGAAACCAAACACA+TGG | 0.643157 | 3_3:+84880249 | Msa0479720:CDS |
| AATAGCTTCAATGAGTGTAG+TGG | 0.645106 | 3_3:-84882606 | None:intergenic |
| TGAGCCTGATACTTTATCAT+GGG | 0.645810 | 3_3:+84878803 | Msa0479720:CDS |
| ATAGAACAGAACAATAGCAT+GGG | 0.651501 | 3_3:+84877703 | Msa0479720:exon |
| TTATGGTTGTGCAGACAAAG+AGG | 0.652699 | 3_3:+84881473 | Msa0479720:CDS |
| ACCCTTCGCTAATATAGAGG+AGG | 0.652831 | 3_3:-84880022 | None:intergenic |
| AAATCGCCGACCCTTATCGA+TGG | 0.652884 | 3_3:+84877800 | Msa0479720:CDS |
| CTAAAAGGAGCATCATAACG+AGG | 0.655401 | 3_3:-84878027 | None:intergenic |
| CGAGCCGCGGGATATTGCAG+AGG | 0.656134 | 3_3:-84877739 | None:intergenic |
| AATTGTTACTGATGATGGGA+AGG | 0.656399 | 3_3:+84879379 | Msa0479720:CDS |
| AGCTGGACACATGATAACAA+AGG | 0.661177 | 3_3:+84878925 | Msa0479720:CDS |
| GGTCGCCGGACATTATGCAA+TGG | 0.661401 | 3_3:-84882504 | None:intergenic |
| CATATCCATATAACAGACAC+GGG | 0.665897 | 3_3:-84880905 | None:intergenic |
| ATCATGTGTCCAGCTAATGG+AGG | 0.666044 | 3_3:-84878917 | None:intergenic |
| ATGCGACTAACACTGAAGGA+TGG | 0.667946 | 3_3:-84880951 | None:intergenic |
| ACTCGGAGCGATCAAACCCA+GGG | 0.675535 | 3_3:-84880574 | None:intergenic |
| TGTCTGTTATATGGATATGG+TGG | 0.678377 | 3_3:+84880909 | Msa0479720:CDS |
| TGGTACTTCAGAAATTGATG+CGG | 0.690564 | 3_3:+84883326 | Msa0479720:three_prime_UTR |
| TGCATTGCGAATATTCGTGG+TGG | 0.694680 | 3_3:+84881005 | Msa0479720:CDS |
| TCTTGGTACCATCTTTACTG+GGG | 0.699589 | 3_3:-84880833 | None:intergenic |
| CGAACCTCTGCAATATCCCG+CGG | 0.709263 | 3_3:+84877735 | Msa0479720:CDS |
| TTTGGAGAAACCAAACACAT+GGG | 0.715304 | 3_3:+84880250 | Msa0479720:CDS |
| TCTGTCATTGACGATTACCA+TGG | 0.715354 | 3_3:+84877772 | Msa0479720:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTAACAAAGTATAAATA+TGG | + | chr3_3:84879045-84879064 | Msa0479720:intron | 10.0% |
| !! | GATATATATTAAAGAAAATA+AGG | - | chr3_3:84881594-84881613 | None:intergenic | 10.0% |
| !!! | ATTTTTCTTTTCTTTTTTGA+AGG | + | chr3_3:84877875-84877894 | Msa0479720:intron | 15.0% |
| !!! | CTTTGTTTTTTTTAATTAGT+CGG | + | chr3_3:84878168-84878187 | Msa0479720:intron | 15.0% |
| !! | AAAACATTAAAAATCATCAA+TGG | - | chr3_3:84878880-84878899 | None:intergenic | 15.0% |
| !!! | TATGCTTTATTATCATTTTT+TGG | + | chr3_3:84879289-84879308 | Msa0479720:CDS | 15.0% |
| !!! | ATGCTTTATTATCATTTTTT+GGG | + | chr3_3:84879290-84879309 | Msa0479720:CDS | 15.0% |
| !!! | GTTTACATTTTTAACTAATA+AGG | + | chr3_3:84880196-84880215 | Msa0479720:CDS | 15.0% |
| !! | AAATTTATCCTTAATATTTC+AGG | - | chr3_3:84881537-84881556 | None:intergenic | 15.0% |
| !!! | TTTTCTTTAATATATATCAG+CGG | + | chr3_3:84881596-84881615 | Msa0479720:intron | 15.0% |
| !! | AAAAGAAAACAAAATCAAAA+TGG | - | chr3_3:84881928-84881947 | None:intergenic | 15.0% |
| !! | TCATTTATCAATCAATATAA+TGG | + | chr3_3:84882071-84882090 | Msa0479720:intron | 15.0% |
| !!! | AGTTCAATAATTATTTCTTA+AGG | + | chr3_3:84882195-84882214 | Msa0479720:intron | 15.0% |
| !!! | GTTCAATAATTATTTCTTAA+GGG | + | chr3_3:84882196-84882215 | Msa0479720:intron | 15.0% |
| !!! | TTCAATAATTATTTCTTAAG+GGG | + | chr3_3:84882197-84882216 | Msa0479720:intron | 15.0% |
| !! | ATACTCGTTAATTATTATCA+AGG | - | chr3_3:84877637-84877656 | None:intergenic | 20.0% |
| !!! | TTTTTTAATTAGTCGGATTT+AGG | + | chr3_3:84878175-84878194 | Msa0479720:intron | 20.0% |
| !!! | TTTTTAATTAGTCGGATTTA+GGG | + | chr3_3:84878176-84878195 | Msa0479720:intron | 20.0% |
| !! | TTTCATAAACTCTTTAGTAT+AGG | + | chr3_3:84878469-84878488 | Msa0479720:intron | 20.0% |
| !!! | AAGTTATCTTTTCATTTTAC+AGG | + | chr3_3:84878602-84878621 | Msa0479720:intron | 20.0% |
| !!! | GATTTTTAATGTTTTGTTTC+AGG | + | chr3_3:84878885-84878904 | Msa0479720:intron | 20.0% |
| !! | TTGAATTGGTATTATCTATA+TGG | + | chr3_3:84879109-84879128 | Msa0479720:intron | 20.0% |
| !! | GATAATAAAGCATATGATAA+AGG | - | chr3_3:84879283-84879302 | None:intergenic | 20.0% |
| !! | TAAAATAAGAAAACATGCAA+CGG | + | chr3_3:84879464-84879483 | Msa0479720:intron | 20.0% |
| !! | ATAAGAATTCAAAACTATTC+AGG | - | chr3_3:84879808-84879827 | None:intergenic | 20.0% |
| !!! | GTTATGTAATTTTATGCATA+TGG | + | chr3_3:84879948-84879967 | Msa0479720:intron | 20.0% |
| !! | TATCAATAAGTTTGACAAAA+GGG | - | chr3_3:84880133-84880152 | None:intergenic | 20.0% |
| !! | TTATCAATAAGTTTGACAAA+AGG | - | chr3_3:84880134-84880153 | None:intergenic | 20.0% |
| !! | AAGTTGTTACATTGTTAAAT+AGG | + | chr3_3:84880697-84880716 | Msa0479720:intron | 20.0% |
| !! | AGGATAAATTTCAATATGTT+AGG | + | chr3_3:84881546-84881565 | Msa0479720:intron | 20.0% |
| !! | AATTAAGGGATATTAATCAA+AGG | - | chr3_3:84881864-84881883 | None:intergenic | 20.0% |
| !! | TTTGATTAATATCCCTTAAT+TGG | + | chr3_3:84881863-84881882 | Msa0479720:intron | 20.0% |
| !! | ATTAACAATAGTCCAATTAA+GGG | - | chr3_3:84881878-84881897 | None:intergenic | 20.0% |
| !! | TTTATCAATCAATATAATGG+AGG | + | chr3_3:84882074-84882093 | Msa0479720:intron | 20.0% |
| !! | CTCTATAAATATCAAAATGA+TGG | + | chr3_3:84882108-84882127 | Msa0479720:intron | 20.0% |
| !!! | TTTATTGTTTGGATATGTTT+TGG | + | chr3_3:84882429-84882448 | Msa0479720:intron | 20.0% |
| !! | CTATTATTATTTACTGCTTT+AGG | + | chr3_3:84882475-84882494 | Msa0479720:intron | 20.0% |
| !! | AAAGAAAATGGTAAGAATTA+TGG | + | chr3_3:84882986-84883005 | Msa0479720:intron | 20.0% |
| !! | GATATATAAAAGGTAGAAAA+AGG | - | chr3_3:84883027-84883046 | None:intergenic | 20.0% |
| !! | AATGGAATAAAATTTCTTTC+AGG | + | chr3_3:84883171-84883190 | Msa0479720:three_prime_UTR | 20.0% |
| !! | GAAAGTTGTTATAAAAACAT+TGG | + | chr3_3:84883306-84883325 | Msa0479720:three_prime_UTR | 20.0% |
| !! | AAGTTAACAAGTTAACAATA+AGG | - | chr3_3:84883415-84883434 | None:intergenic | 20.0% |
| !! | ATTGAATGAATTTGAGTTAG+TGG | - | chr3_3:84877832-84877851 | None:intergenic | 25.0% |
| !!! | ATGGAAGTAAAAGTACTTAT+CGG | - | chr3_3:84878058-84878077 | None:intergenic | 25.0% |
| ! | TAAACACTAATGTGATTGTT+TGG | + | chr3_3:84878227-84878246 | Msa0479720:intron | 25.0% |
| !! | TTTTGAATTCATCTGATTCA+GGG | + | chr3_3:84878345-84878364 | Msa0479720:intron | 25.0% |
| ! | AAGAGTTTATGAAAATAAGC+CGG | - | chr3_3:84878463-84878482 | None:intergenic | 25.0% |
| !! | ATTAAGTTGTTTATCCAAAC+AGG | + | chr3_3:84878575-84878594 | Msa0479720:intron | 25.0% |
| !! | TTTCATTTTACAGGATAGTT+TGG | + | chr3_3:84878611-84878630 | Msa0479720:intron | 25.0% |
| !! | TGTATCATTGAACACATTTT+CGG | + | chr3_3:84878686-84878705 | Msa0479720:intron | 25.0% |
| ! | TCATCAAAGATGATTTGAAT+TGG | + | chr3_3:84879095-84879114 | Msa0479720:intron | 25.0% |
| ! | AACTTATGTATGATTGTTCT+TGG | + | chr3_3:84879145-84879164 | Msa0479720:intron | 25.0% |
| !!! | TTATTATCATTTTTTGGGCA+CGG | + | chr3_3:84879295-84879314 | Msa0479720:CDS | 25.0% |
| ! | AGAAATTCTAATGTTCAATC+AGG | - | chr3_3:84879596-84879615 | None:intergenic | 25.0% |
| !! | CAACTTTGAAAAAATGTGTT+TGG | + | chr3_3:84879744-84879763 | Msa0479720:intron | 25.0% |
| !!! | TCAAAACTATTCAGGTTTTA+TGG | - | chr3_3:84879800-84879819 | None:intergenic | 25.0% |
| ! | TCTTATGTAACAACATATCA+AGG | + | chr3_3:84879828-84879847 | Msa0479720:intron | 25.0% |
| ! | AAAAACAGAATCAGATTCAT+GGG | - | chr3_3:84879984-84880003 | None:intergenic | 25.0% |
| ! | TAAAAACAGAATCAGATTCA+TGG | - | chr3_3:84879985-84880004 | None:intergenic | 25.0% |
| !!! | AAAAAGGATATTGTTTTGGA+TGG | + | chr3_3:84880876-84880895 | Msa0479720:CDS | 25.0% |
| ! | ATTGTACTCACAAAACATTT+AGG | + | chr3_3:84880972-84880991 | Msa0479720:CDS | 25.0% |
| ! | AATGAATCTAAACAAACCTA+TGG | - | chr3_3:84881378-84881397 | None:intergenic | 25.0% |
| ! | GATTAACAATAGTCCAATTA+AGG | - | chr3_3:84881879-84881898 | None:intergenic | 25.0% |
| !!! | TTGATTTTGTTTTCTTTTCC+TGG | + | chr3_3:84881930-84881949 | Msa0479720:intron | 25.0% |
| !! | TAATTATTTCTTAAGGGGAA+TGG | + | chr3_3:84882202-84882221 | Msa0479720:intron | 25.0% |
| ! | TGGTATTCATAATTATTTCC+TGG | + | chr3_3:84882267-84882286 | Msa0479720:intron | 25.0% |
| ! | TTAACAAATAGTTGTCACAT+AGG | + | chr3_3:84882736-84882755 | Msa0479720:intron | 25.0% |
| ! | TAACAAATAGTTGTCACATA+GGG | + | chr3_3:84882737-84882756 | Msa0479720:intron | 25.0% |
| !! | ACAAATTATAGGGTTTGTTT+GGG | - | chr3_3:84882925-84882944 | None:intergenic | 25.0% |
| !! | ATTCTTACCATTTTCTTTGT+TGG | - | chr3_3:84882984-84883003 | None:intergenic | 25.0% |
| ! | CTTCAGACATGATATATAAA+AGG | - | chr3_3:84883037-84883056 | None:intergenic | 25.0% |
| ! | GATCACAGTATATATAAGAA+TGG | + | chr3_3:84883153-84883172 | Msa0479720:three_prime_UTR | 25.0% |
| ! | TATTCAACAGAGAAATGAAT+TGG | - | chr3_3:84883210-84883229 | None:intergenic | 25.0% |
| ! | AAATGATTGACGATTCATTT+GGG | - | chr3_3:84883257-84883276 | None:intergenic | 25.0% |
| ! | TAAATGATTGACGATTCATT+TGG | - | chr3_3:84883258-84883277 | None:intergenic | 25.0% |
| AGATGTTGAAATGTGAAAGA+AGG | - | chr3_3:84877664-84877683 | None:intergenic | 30.0% | |
| ! | CATCTTTTATCTCCTTTCTT+CGG | + | chr3_3:84877679-84877698 | Msa0479720:five_prime_UTR | 30.0% |
| ATAGAACAGAACAATAGCAT+GGG | + | chr3_3:84877703-84877722 | Msa0479720:exon | 30.0% | |
| !!! | TTCTTTTCTTTTTTGAAGGC+TGG | + | chr3_3:84877879-84877898 | Msa0479720:intron | 30.0% |
| TGTGATTGTTTCGTTAAGTT+TGG | - | chr3_3:84877992-84878011 | None:intergenic | 30.0% | |
| ! | TACTTTTACTTCCATAACAC+TGG | + | chr3_3:84878063-84878082 | Msa0479720:CDS | 30.0% |
| !! | GTTTTGAATTCATCTGATTC+AGG | + | chr3_3:84878344-84878363 | Msa0479720:intron | 30.0% |
| CTCAAACAGTTTCACTAAAT+GGG | - | chr3_3:84878393-84878412 | None:intergenic | 30.0% | |
| TCTCAAACAGTTTCACTAAA+TGG | - | chr3_3:84878394-84878413 | None:intergenic | 30.0% | |
| GAAATGTCATAACTCATAAG+CGG | - | chr3_3:84878429-84878448 | None:intergenic | 30.0% | |
| AAGATAACTTAGAACCTGTT+TGG | - | chr3_3:84878592-84878611 | None:intergenic | 30.0% | |
| ! | ATTTTACAGGATAGTTTGGA+GGG | + | chr3_3:84878615-84878634 | Msa0479720:intron | 30.0% |
| !!! | CCTGTTTTAATTTCTAGCAA+AGG | - | chr3_3:84878845-84878864 | None:intergenic | 30.0% |
| CCTTTGCTAGAAATTAAAAC+AGG | + | chr3_3:84878842-84878861 | Msa0479720:intron | 30.0% | |
| ! | TTAAATTTTCCTCCATTAGC+TGG | + | chr3_3:84878908-84878927 | Msa0479720:CDS | 30.0% |
| GAAAACCCTAAATATTCGTT+TGG | + | chr3_3:84879353-84879372 | Msa0479720:CDS | 30.0% | |
| TTCCTCCAAACGAATATTTA+GGG | - | chr3_3:84879361-84879380 | None:intergenic | 30.0% | |
| ATTCCTCCAAACGAATATTT+AGG | - | chr3_3:84879362-84879381 | None:intergenic | 30.0% | |
| ATCATCAAATACATTGACGT+TGG | - | chr3_3:84879516-84879535 | None:intergenic | 30.0% | |
| !! | TAATAACCAAAGTGCTGAAA+TGG | - | chr3_3:84879681-84879700 | None:intergenic | 30.0% |
| !!! | TAAGTGACCGAGTTTTTTTT+AGG | + | chr3_3:84879699-84879718 | Msa0479720:intron | 30.0% |
| TCACTTGCCTAAAAAAAACT+CGG | - | chr3_3:84879709-84879728 | None:intergenic | 30.0% | |
| CTTTAGTACATCTAATTCCA+CGG | + | chr3_3:84879873-84879892 | Msa0479720:intron | 30.0% | |
| AATAAGTTTGACAAAAGGGA+GGG | - | chr3_3:84880129-84880148 | None:intergenic | 30.0% | |
| !!! | ACTCGGACTAGTTTATATTT+TGG | - | chr3_3:84880227-84880246 | None:intergenic | 30.0% |
| TCAAGTAACTTACTATCAGT+TGG | - | chr3_3:84880337-84880356 | None:intergenic | 30.0% | |
| CAAGTAAGAGACTTAAAATC+AGG | + | chr3_3:84880377-84880396 | Msa0479720:CDS | 30.0% | |
| ! | CAGTTTATGATATTTCTGCA+CGG | + | chr3_3:84880435-84880454 | Msa0479720:CDS | 30.0% |
| CAAATACTGGAATTCAAAAC+AGG | - | chr3_3:84880659-84880678 | None:intergenic | 30.0% | |
| !! | CTGTTTTGAATTCCAGTATT+TGG | + | chr3_3:84880657-84880676 | Msa0479720:intron | 30.0% |
| ! | ATGTGGAAAGCACATAAAAA+AGG | - | chr3_3:84880800-84880819 | None:intergenic | 30.0% |
| ! | TTTTCGCAACAATGAACATT+GGG | - | chr3_3:84880860-84880879 | None:intergenic | 30.0% |
| ! | TTTTTCGCAACAATGAACAT+TGG | - | chr3_3:84880861-84880880 | None:intergenic | 30.0% |
| AATGTTCATTGTTGCGAAAA+AGG | + | chr3_3:84880860-84880879 | Msa0479720:CDS | 30.0% | |
| ! | TGCGAAAAAGGATATTGTTT+TGG | + | chr3_3:84880872-84880891 | Msa0479720:CDS | 30.0% |
| !!! | GCAATTCTGTTTTTTAGCAA+GGG | - | chr3_3:84881066-84881085 | None:intergenic | 30.0% |
| !!! | AGCAATTCTGTTTTTTAGCA+AGG | - | chr3_3:84881067-84881086 | None:intergenic | 30.0% |
| !!! | TGCTTTGTTTTTCCATTTCT+AGG | + | chr3_3:84881218-84881237 | Msa0479720:intron | 30.0% |
| TAAATAGAGAGCTGTTGAAT+GGG | - | chr3_3:84881252-84881271 | None:intergenic | 30.0% | |
| ATAAATAGAGAGCTGTTGAA+TGG | - | chr3_3:84881253-84881272 | None:intergenic | 30.0% | |
| ACAAACCTATGGTAAATTTG+TGG | - | chr3_3:84881367-84881386 | None:intergenic | 30.0% | |
| CATTTCTTTAAACAAGCTAC+TGG | - | chr3_3:84881405-84881424 | None:intergenic | 30.0% | |
| CTGATTCTTAATTGTTACTC+AGG | + | chr3_3:84881432-84881451 | Msa0479720:intron | 30.0% | |
| !! | TAATCAAGTGAGTTTTATCC+TGG | + | chr3_3:84881511-84881530 | Msa0479720:intron | 30.0% |
| ! | TTATTAGTAAGTGCTGTTAG+TGG | + | chr3_3:84881623-84881642 | Msa0479720:intron | 30.0% |
| TAGATGCATAACAGAGAAAT+AGG | + | chr3_3:84881758-84881777 | Msa0479720:intron | 30.0% | |
| ! | GAGATATGATTTTCACTTAC+TGG | - | chr3_3:84881804-84881823 | None:intergenic | 30.0% |
| TTAATCAAAGGTCCAACAAA+GGG | - | chr3_3:84881852-84881871 | None:intergenic | 30.0% | |
| ATTAATCAAAGGTCCAACAA+AGG | - | chr3_3:84881853-84881872 | None:intergenic | 30.0% | |
| TCAAAATGGACATGATATCA+TGG | - | chr3_3:84881914-84881933 | None:intergenic | 30.0% | |
| CTCAAAATACGAGGATAAAA+TGG | - | chr3_3:84882315-84882334 | None:intergenic | 30.0% | |
| ! | CATTTTATCCTCGTATTTTG+AGG | + | chr3_3:84882313-84882332 | Msa0479720:intron | 30.0% |
| ATCCAAACAATAAAAACCAC+AGG | - | chr3_3:84882423-84882442 | None:intergenic | 30.0% | |
| !!! | TTGTTTGGATATGTTTTGGT+AGG | + | chr3_3:84882433-84882452 | Msa0479720:intron | 30.0% |
| AACAAATAGTTGTCACATAG+GGG | + | chr3_3:84882738-84882757 | Msa0479720:intron | 30.0% | |
| TAGAGAGAAGAAAAGGAAAA+GGG | - | chr3_3:84882833-84882852 | None:intergenic | 30.0% | |
| ATAGAGAGAAGAAAAGGAAA+AGG | - | chr3_3:84882834-84882853 | None:intergenic | 30.0% | |
| ! | CAAATTATAGGGTTTGTTTG+GGG | - | chr3_3:84882924-84882943 | None:intergenic | 30.0% |
| ! | GACAAATTATAGGGTTTGTT+TGG | - | chr3_3:84882926-84882945 | None:intergenic | 30.0% |
| AGTCAATGCGACAAATTATA+GGG | - | chr3_3:84882935-84882954 | None:intergenic | 30.0% | |
| ATGGTAAGAATTATGGTTTC+AGG | + | chr3_3:84882993-84883012 | Msa0479720:intron | 30.0% | |
| ! | CAAAAATGTTAGAAGCACAT+TGG | + | chr3_3:84883112-84883131 | Msa0479720:CDS | 30.0% |
| TATATATACTGTGATCGAGT+GGG | - | chr3_3:84883149-84883168 | None:intergenic | 30.0% | |
| TTATATATACTGTGATCGAG+TGG | - | chr3_3:84883150-84883169 | None:intergenic | 30.0% | |
| AAGCATTCCGGAATATTTAA+AGG | + | chr3_3:84883372-84883391 | Msa0479720:three_prime_UTR | 30.0% | |
| AGCATTCCGGAATATTTAAA+GGG | + | chr3_3:84883373-84883392 | Msa0479720:three_prime_UTR | 30.0% | |
| CATAGAACAGAACAATAGCA+TGG | + | chr3_3:84877702-84877721 | Msa0479720:exon | 35.0% | |
| ATATTGCAGAGGTTCGTTTA+GGG | - | chr3_3:84877731-84877750 | None:intergenic | 35.0% | |
| ACAGGTTCAATTGACGAATT+CGG | + | chr3_3:84877942-84877961 | Msa0479720:CDS | 35.0% | |
| !! | TACTTATCGGCTCTTCTAAA+AGG | - | chr3_3:84878045-84878064 | None:intergenic | 35.0% |
| !! | GTTTGGTTTGAGAGAACTTA+TGG | + | chr3_3:84878244-84878263 | Msa0479720:intron | 35.0% |
| GCTCAATATGTCTATCCAAA+AGG | - | chr3_3:84878371-84878390 | None:intergenic | 35.0% | |
| ! | GACATTTCATATGTTGCTTC+CGG | + | chr3_3:84878441-84878460 | Msa0479720:intron | 35.0% |
| ! | CATTTTACAGGATAGTTTGG+AGG | + | chr3_3:84878614-84878633 | Msa0479720:intron | 35.0% |
| !! | TATAAAAGTGTTGCGTATCG+AGG | + | chr3_3:84878770-84878789 | Msa0479720:CDS | 35.0% |
| TGAGCCTGATACTTTATCAT+GGG | + | chr3_3:84878803-84878822 | Msa0479720:CDS | 35.0% | |
| ATTGCAAAACATGCACTTTC+CGG | - | chr3_3:84879010-84879029 | None:intergenic | 35.0% | |
| TGTATGATTGTTCTTGGTAC+TGG | + | chr3_3:84879151-84879170 | Msa0479720:intron | 35.0% | |
| !! | CTGCTTTTATACTGTAGAGA+TGG | + | chr3_3:84879221-84879240 | Msa0479720:intron | 35.0% |
| ! | AATCAGGAGATATTTTGTGC+TGG | + | chr3_3:84879321-84879340 | Msa0479720:CDS | 35.0% |
| AACCCTAAATATTCGTTTGG+AGG | + | chr3_3:84879356-84879375 | Msa0479720:CDS | 35.0% | |
| GAGGAATTGTTACTGATGAT+GGG | + | chr3_3:84879375-84879394 | Msa0479720:CDS | 35.0% | |
| !! | AATTGTTACTGATGATGGGA+AGG | + | chr3_3:84879379-84879398 | Msa0479720:CDS | 35.0% |
| TGCCTCCTAGAAAACAAATA+CGG | - | chr3_3:84879559-84879578 | None:intergenic | 35.0% | |
| TCTTGCTTAGTAATCTCCTA+TGG | + | chr3_3:84879613-84879632 | Msa0479720:intron | 35.0% | |
| CTTGCTTAGTAATCTCCTAT+GGG | + | chr3_3:84879614-84879633 | Msa0479720:intron | 35.0% | |
| TAACTTCCATTTCAGCACTT+TGG | + | chr3_3:84879672-84879691 | Msa0479720:intron | 35.0% | |
| TATGGCAACACTTCAAGAAA+GGG | - | chr3_3:84879782-84879801 | None:intergenic | 35.0% | |
| TTATGGCAACACTTCAAGAA+AGG | - | chr3_3:84879783-84879802 | None:intergenic | 35.0% | |
| TGTGATGAATATATCTTCCG+TGG | - | chr3_3:84879893-84879912 | None:intergenic | 35.0% | |
| TACATAACAGTGAGTTGCAA+AGG | - | chr3_3:84879936-84879955 | None:intergenic | 35.0% | |
| !! | CAGTAGTACAGTTTGTTAAC+TGG | - | chr3_3:84880053-84880072 | None:intergenic | 35.0% |
| ATAAGTTTGACAAAAGGGAG+GGG | - | chr3_3:84880128-84880147 | None:intergenic | 35.0% | |
| CAATAAGTTTGACAAAAGGG+AGG | - | chr3_3:84880130-84880149 | None:intergenic | 35.0% | |
| TAAACTAGTCCGAGTAGATT+TGG | + | chr3_3:84880232-84880251 | Msa0479720:CDS | 35.0% | |
| TTGGTTTCTCCAAATCTACT+CGG | - | chr3_3:84880244-84880263 | None:intergenic | 35.0% | |
| ATTTGGAGAAACCAAACACA+TGG | + | chr3_3:84880249-84880268 | Msa0479720:CDS | 35.0% | |
| TTTGGAGAAACCAAACACAT+GGG | + | chr3_3:84880250-84880269 | Msa0479720:CDS | 35.0% | |
| TAAACTGTGCCAATGTCAAT+TGG | - | chr3_3:84880422-84880441 | None:intergenic | 35.0% | |
| TCACGTAATATCTTCAGATC+AGG | - | chr3_3:84880545-84880564 | None:intergenic | 35.0% | |
| !! | TACCTGATTGACTTGAAACT+CGG | - | chr3_3:84880594-84880613 | None:intergenic | 35.0% |
| AAACAGGCAATTTAACAGTG+AGG | - | chr3_3:84880643-84880662 | None:intergenic | 35.0% | |
| ! | CCTGTTTTCATACCAAATAC+TGG | - | chr3_3:84880672-84880691 | None:intergenic | 35.0% |
| CCAGTATTTGGTATGAAAAC+AGG | + | chr3_3:84880669-84880688 | Msa0479720:intron | 35.0% | |
| TTGAATTCCTTTAGTCTGCA+TGG | + | chr3_3:84880725-84880744 | Msa0479720:intron | 35.0% | |
| TGAATTCCTTTAGTCTGCAT+GGG | + | chr3_3:84880726-84880745 | Msa0479720:intron | 35.0% | |
| ! | TGTATCATTGTTGCTTGACT+TGG | + | chr3_3:84880774-84880793 | Msa0479720:intron | 35.0% |
| TTATGTGCTTTCCACATTTC+AGG | + | chr3_3:84880803-84880822 | Msa0479720:intron | 35.0% | |
| ATCTTGGTACCATCTTTACT+GGG | - | chr3_3:84880837-84880856 | None:intergenic | 35.0% | |
| AACAATGAACATTGGGATCT+TGG | - | chr3_3:84880853-84880872 | None:intergenic | 35.0% | |
| CATATCCATATAACAGACAC+GGG | - | chr3_3:84880908-84880927 | None:intergenic | 35.0% | |
| CCATATCCATATAACAGACA+CGG | - | chr3_3:84880909-84880928 | None:intergenic | 35.0% | |
| TGTCTGTTATATGGATATGG+TGG | + | chr3_3:84880909-84880928 | Msa0479720:CDS | 35.0% | |
| ! | TTTGATGACTTCATTTCTGC+TGG | + | chr3_3:84881086-84881105 | Msa0479720:CDS | 35.0% |
| TCTCTGTACAGATAAAGGAA+AGG | - | chr3_3:84881288-84881307 | None:intergenic | 35.0% | |
| ACAAAGAGGAAGAGTTTCAT+TGG | + | chr3_3:84881487-84881506 | Msa0479720:CDS | 35.0% | |
| TATCCTGGCCTGAAATATTA+AGG | + | chr3_3:84881526-84881545 | Msa0479720:intron | 35.0% | |
| TATCCTTAATATTTCAGGCC+AGG | - | chr3_3:84881532-84881551 | None:intergenic | 35.0% | |
| CATATGGGAATTGTTCAAAC+CGG | - | chr3_3:84881669-84881688 | None:intergenic | 35.0% | |
| GTTTGAACAATTCCCATATG+TGG | + | chr3_3:84881669-84881688 | Msa0479720:intron | 35.0% | |
| CTATTGTTAATCACCACCAT+TGG | + | chr3_3:84881887-84881906 | Msa0479720:intron | 35.0% | |
| ! | AGAAGAGATAGTGTCATTGT+TGG | + | chr3_3:84882008-84882027 | Msa0479720:intron | 35.0% |
| GTGGCGTAAGAAAATAACTT+TGG | - | chr3_3:84882035-84882054 | None:intergenic | 35.0% | |
| TATTTCTTAAGGGGAATGGT+TGG | + | chr3_3:84882206-84882225 | Msa0479720:intron | 35.0% | |
| TTATTTCCTGGCATAAGTTG+AGG | + | chr3_3:84882279-84882298 | Msa0479720:intron | 35.0% | |
| AAACATGGTTGAGAAACAAC+AGG | - | chr3_3:84882375-84882394 | None:intergenic | 35.0% | |
| GCAATCTGTCTTTCAAAACA+TGG | - | chr3_3:84882390-84882409 | None:intergenic | 35.0% | |
| ! | CTCCTGTGGTTTTTATTGTT+TGG | + | chr3_3:84882418-84882437 | Msa0479720:intron | 35.0% |
| GTTGCAAGTAACAGAATAAG+TGG | + | chr3_3:84882697-84882716 | Msa0479720:intron | 35.0% | |
| ACAAATAGTTGTCACATAGG+GGG | + | chr3_3:84882739-84882758 | Msa0479720:intron | 35.0% | |
| AGAGAGATAGAGAGAAGAAA+AGG | - | chr3_3:84882840-84882859 | None:intergenic | 35.0% | |
| CAGTCAATGCGACAAATTAT+AGG | - | chr3_3:84882936-84882955 | None:intergenic | 35.0% | |
| AAATTTCTTTCAGGCAATGC+CGG | + | chr3_3:84883180-84883199 | Msa0479720:three_prime_UTR | 35.0% | |
| !! | AGAGAAATGAATTGGTTTGC+CGG | - | chr3_3:84883202-84883221 | None:intergenic | 35.0% |
| ATTGACGATTCATTTGGGTA+TGG | - | chr3_3:84883252-84883271 | None:intergenic | 35.0% | |
| TGGTACTTCAGAAATTGATG+CGG | + | chr3_3:84883326-84883345 | Msa0479720:three_prime_UTR | 35.0% | |
| AAATATTCCGGAATGCTTAC+AGG | - | chr3_3:84883370-84883389 | None:intergenic | 35.0% | |
| GCATGACCCTTTAAATATTC+CGG | - | chr3_3:84883382-84883401 | None:intergenic | 35.0% | |
| TTCTGTTCTATGCCGAAGAA+AGG | - | chr3_3:84877694-84877713 | None:intergenic | 40.0% | |
| GATATTGCAGAGGTTCGTTT+AGG | - | chr3_3:84877732-84877751 | None:intergenic | 40.0% | |
| TCTGTCATTGACGATTACCA+TGG | + | chr3_3:84877772-84877791 | Msa0479720:CDS | 40.0% | |
| TTGTTACCATCGATAAGGGT+CGG | - | chr3_3:84877809-84877828 | None:intergenic | 40.0% | |
| GTGGTTGTTACCATCGATAA+GGG | - | chr3_3:84877813-84877832 | None:intergenic | 40.0% | |
| AGTGGTTGTTACCATCGATA+AGG | - | chr3_3:84877814-84877833 | None:intergenic | 40.0% | |
| CTGATGCTGAAGAAGTGAAA+GGG | + | chr3_3:84877908-84877927 | Msa0479720:CDS | 40.0% | |
| !! | GAAAGGGTTTGTTGAGAAAC+AGG | + | chr3_3:84877924-84877943 | Msa0479720:CDS | 40.0% |
| !! | CTAAAAGGAGCATCATAACG+AGG | - | chr3_3:84878030-84878049 | None:intergenic | 40.0% |
| TGTGAAAGTGAAAGCAAACC+TGG | - | chr3_3:84878116-84878135 | None:intergenic | 40.0% | |
| AAACTGTTTGAGAGAGCTTC+TGG | + | chr3_3:84878401-84878420 | Msa0479720:intron | 40.0% | |
| ! | CATCTTCACTCAAGGCATTT+GGG | - | chr3_3:84878662-84878681 | None:intergenic | 40.0% |
| TACAGTTCCATCTTCACTCA+AGG | - | chr3_3:84878670-84878689 | None:intergenic | 40.0% | |
| ! | TTAGTTCCAGTGGTAGTGAT+TGG | + | chr3_3:84878742-84878761 | Msa0479720:CDS | 40.0% |
| ! | TAGTTCCAGTGGTAGTGATT+GGG | + | chr3_3:84878743-84878762 | Msa0479720:CDS | 40.0% |
| CTGAGCCTGATACTTTATCA+TGG | + | chr3_3:84878802-84878821 | Msa0479720:CDS | 40.0% | |
| ! | CTCACCCATGATAAAGTATC+AGG | - | chr3_3:84878810-84878829 | None:intergenic | 40.0% |
| !! | TAATTTCTAGCAAAGGCACG+AGG | - | chr3_3:84878838-84878857 | None:intergenic | 40.0% |
| GTTATCATGTGTCCAGCTAA+TGG | - | chr3_3:84878923-84878942 | None:intergenic | 40.0% | |
| AGCTGGACACATGATAACAA+AGG | + | chr3_3:84878925-84878944 | Msa0479720:CDS | 40.0% | |
| GCAAAGGACATCACTTACTT+GGG | - | chr3_3:84878976-84878995 | None:intergenic | 40.0% | |
| AGCAAAGGACATCACTTACT+TGG | - | chr3_3:84878977-84878996 | None:intergenic | 40.0% | |
| TCCTTTGCTCACATTCTTTC+CGG | + | chr3_3:84878988-84879007 | Msa0479720:intron | 40.0% | |
| !! | TGATTGTTCTTGGTACTGGT+AGG | + | chr3_3:84879155-84879174 | Msa0479720:intron | 40.0% |
| ATACTGTAGAGATGGAGAAG+TGG | + | chr3_3:84879229-84879248 | Msa0479720:intron | 40.0% | |
| GGAGGAATTGTTACTGATGA+TGG | + | chr3_3:84879374-84879393 | Msa0479720:CDS | 40.0% | |
| TAGAAAACAAATACGGGGCA+GGG | - | chr3_3:84879552-84879571 | None:intergenic | 40.0% | |
| CCTCCTAGAAAACAAATACG+GGG | - | chr3_3:84879557-84879576 | None:intergenic | 40.0% | |
| GCCTCCTAGAAAACAAATAC+GGG | - | chr3_3:84879558-84879577 | None:intergenic | 40.0% | |
| AGTTTCTCTACTGATCCCAT+AGG | - | chr3_3:84879632-84879651 | None:intergenic | 40.0% | |
| TCCTCCTCTATATTAGCGAA+GGG | + | chr3_3:84880021-84880040 | Msa0479720:CDS | 40.0% | |
| AGTACATCTTTGTCAGACTC+TGG | - | chr3_3:84880287-84880306 | None:intergenic | 40.0% | |
| GTTACCATTTACAGCACATG+CGG | - | chr3_3:84880315-84880334 | None:intergenic | 40.0% | |
| ! | AATTGGCAGTTGATGCAACA+AGG | - | chr3_3:84880405-84880424 | None:intergenic | 40.0% |
| CATCAACTGCCAATTGACAT+TGG | + | chr3_3:84880410-84880429 | Msa0479720:CDS | 40.0% | |
| TTTACAAGCTTTCTGTCTCC+CGG | + | chr3_3:84880485-84880504 | Msa0479720:CDS | 40.0% | |
| ! | GTTTTTGTCCCCAGTAAAGA+TGG | + | chr3_3:84880825-84880844 | Msa0479720:CDS | 40.0% |
| TCTTGGTACCATCTTTACTG+GGG | - | chr3_3:84880836-84880855 | None:intergenic | 40.0% | |
| GATCTTGGTACCATCTTTAC+TGG | - | chr3_3:84880838-84880857 | None:intergenic | 40.0% | |
| CCGTGTCTGTTATATGGATA+TGG | + | chr3_3:84880906-84880925 | Msa0479720:CDS | 40.0% | |
| TACAATGCGACTAACACTGA+AGG | - | chr3_3:84880958-84880977 | None:intergenic | 40.0% | |
| TACTGCATTGCGAATATTCG+TGG | + | chr3_3:84881002-84881021 | Msa0479720:CDS | 40.0% | |
| GATGCATAACTTTCTGGGTT+GGG | - | chr3_3:84881138-84881157 | None:intergenic | 40.0% | |
| CCTTCGATGCATAACTTTCT+GGG | - | chr3_3:84881143-84881162 | None:intergenic | 40.0% | |
| ACCTTCGATGCATAACTTTC+TGG | - | chr3_3:84881144-84881163 | None:intergenic | 40.0% | |
| AGAAAGTTATGCATCGAAGG+TGG | + | chr3_3:84881143-84881162 | Msa0479720:CDS | 40.0% | |
| ! | TGTTGGTGCTTGCATAAATC+AGG | + | chr3_3:84881184-84881203 | Msa0479720:CDS | 40.0% |
| TCAGGTCTCTGTACAGATAA+AGG | - | chr3_3:84881293-84881312 | None:intergenic | 40.0% | |
| CGGTTCCACAAATTTACCAT+AGG | + | chr3_3:84881359-84881378 | Msa0479720:CDS | 40.0% | |
| ATTGTTACTCAGGTCATGCT+TGG | + | chr3_3:84881442-84881461 | Msa0479720:intron | 40.0% | |
| TTATGGTTGTGCAGACAAAG+AGG | + | chr3_3:84881473-84881492 | Msa0479720:CDS | 40.0% | |
| GAACAATTCCCATATGTGGA+TGG | + | chr3_3:84881673-84881692 | Msa0479720:intron | 40.0% | |
| ! | CTTTTCGTCCATCCACATAT+GGG | - | chr3_3:84881684-84881703 | None:intergenic | 40.0% |
| ATGATATCATGGACCAATGG+TGG | - | chr3_3:84881903-84881922 | None:intergenic | 40.0% | |
| GACATGATATCATGGACCAA+TGG | - | chr3_3:84881906-84881925 | None:intergenic | 40.0% | |
| ATGTGTAGCTTATGAACTCC+AGG | - | chr3_3:84881951-84881970 | None:intergenic | 40.0% | |
| TAAGCTACACATGCATGTTC+TGG | + | chr3_3:84881959-84881978 | Msa0479720:intron | 40.0% | |
| TGATAATTGTCATGCGACTG+TGG | - | chr3_3:84882054-84882073 | None:intergenic | 40.0% | |
| TCAGGTAAAGCATGAAAGAC+AGG | - | chr3_3:84882144-84882163 | None:intergenic | 40.0% | |
| TAACATCGAGATTCAGCTTC+AGG | - | chr3_3:84882162-84882181 | None:intergenic | 40.0% | |
| CAGATGAACCTCAAAATACG+AGG | - | chr3_3:84882324-84882343 | None:intergenic | 40.0% | |
| !!! | CTCGTATTTTGAGGTTCATC+TGG | + | chr3_3:84882322-84882341 | Msa0479720:intron | 40.0% |
| GATTGCTTTATGAACTCCTG+TGG | + | chr3_3:84882404-84882423 | Msa0479720:intron | 40.0% | |
| ACTCACCATTGCATAATGTC+CGG | + | chr3_3:84882499-84882518 | Msa0479720:CDS | 40.0% | |
| !! | GGGTATTGAATTGACTTGTC+AGG | - | chr3_3:84882543-84882562 | None:intergenic | 40.0% |
| CCGTCAACAACATAGTTGAT+GGG | - | chr3_3:84882563-84882582 | None:intergenic | 40.0% | |
| CCCATCAACTATGTTGTTGA+CGG | + | chr3_3:84882560-84882579 | Msa0479720:CDS | 40.0% | |
| CAAATAGTTGTCACATAGGG+GGG | + | chr3_3:84882740-84882759 | Msa0479720:intron | 40.0% | |
| AAATAGTTGTCACATAGGGG+GGG | + | chr3_3:84882741-84882760 | Msa0479720:intron | 40.0% | |
| AGAGAAGAAAAGGAAAAGGG+TGG | - | chr3_3:84882830-84882849 | None:intergenic | 40.0% | |
| ACTACATAGCACATACTGCA+TGG | - | chr3_3:84882886-84882905 | None:intergenic | 40.0% | |
| GTATGTGCTATGTAGTAGCT+TGG | + | chr3_3:84882890-84882909 | Msa0479720:CDS | 40.0% | |
| AGATCGATGAAACTGCTGAT+CGG | + | chr3_3:84883076-84883095 | Msa0479720:intron | 40.0% | |
| ! | TGCTGATCGGTACAGTTTTA+TGG | + | chr3_3:84883089-84883108 | Msa0479720:CDS | 40.0% |
| TTCATTTGGGTATGGTAGCA+TGG | - | chr3_3:84883244-84883263 | None:intergenic | 40.0% | |
| TTACTTGCCTGTAAGCATTC+CGG | + | chr3_3:84883360-84883379 | Msa0479720:three_prime_UTR | 40.0% | |
| CCTTTCACTTCTTCAGCATC+AGG | - | chr3_3:84877910-84877929 | None:intergenic | 45.0% | |
| CCTGATGCTGAAGAAGTGAA+AGG | + | chr3_3:84877907-84877926 | Msa0479720:CDS | 45.0% | |
| AGAGAATGTCCTGTGCTTGA+AGG | - | chr3_3:84878089-84878108 | None:intergenic | 45.0% | |
| ACAGGACATTCTCTATGTCC+AGG | + | chr3_3:84878095-84878114 | Msa0479720:CDS | 45.0% | |
| ! | AGTCGGATTTAGGGTCTGTT+TGG | + | chr3_3:84878185-84878204 | Msa0479720:intron | 45.0% |
| ! | TCATCTGATTCAGGGCCTTT+TGG | + | chr3_3:84878353-84878372 | Msa0479720:intron | 45.0% |
| TTTGGGTCAAGCAAAACCTG+TGG | - | chr3_3:84878645-84878664 | None:intergenic | 45.0% | |
| ! | CCATCTTCACTCAAGGCATT+TGG | - | chr3_3:84878663-84878682 | None:intergenic | 45.0% |
| CCAAATGCCTTGAGTGAAGA+TGG | + | chr3_3:84878660-84878679 | Msa0479720:intron | 45.0% | |
| GAGTGAAGATGCCAAGTACT+TGG | + | chr3_3:84878710-84878729 | Msa0479720:intron | 45.0% | |
| AAGCGCATAAGCCAAGTACT+TGG | - | chr3_3:84878724-84878743 | None:intergenic | 45.0% | |
| ATCATGTGTCCAGCTAATGG+AGG | - | chr3_3:84878920-84878939 | None:intergenic | 45.0% | |
| TCCGGAAAGAATGTGAGCAA+AGG | - | chr3_3:84878992-84879011 | None:intergenic | 45.0% | |
| ATGGAGAAGTGGTAGATGCT+GGG | + | chr3_3:84879240-84879259 | Msa0479720:CDS | 45.0% | |
| !! | TTTTTGGGCACGGATCAATC+AGG | + | chr3_3:84879305-84879324 | Msa0479720:CDS | 45.0% |
| CTAGAAAACAAATACGGGGC+AGG | - | chr3_3:84879553-84879572 | None:intergenic | 45.0% | |
| !! | CTGCCCCGTATTTGTTTTCT+AGG | + | chr3_3:84879551-84879570 | Msa0479720:intron | 45.0% |
| !! | CCCCGTATTTGTTTTCTAGG+AGG | + | chr3_3:84879554-84879573 | Msa0479720:intron | 45.0% |
| CTCCTCCTCTATATTAGCGA+AGG | + | chr3_3:84880020-84880039 | Msa0479720:CDS | 45.0% | |
| ACCCTTCGCTAATATAGAGG+AGG | - | chr3_3:84880025-84880044 | None:intergenic | 45.0% | |
| CACACCCTTCGCTAATATAG+AGG | - | chr3_3:84880028-84880047 | None:intergenic | 45.0% | |
| AGAACATCAGCCCATGTGTT+TGG | - | chr3_3:84880263-84880282 | None:intergenic | 45.0% | |
| ! | TTGCACTGATAGACGATACC+GGG | - | chr3_3:84880506-84880525 | None:intergenic | 45.0% |
| ! | GTTGCACTGATAGACGATAC+CGG | - | chr3_3:84880507-84880526 | None:intergenic | 45.0% |
| TATCGTCTATCAGTGCAACC+TGG | + | chr3_3:84880508-84880527 | Msa0479720:CDS | 45.0% | |
| ATCGTCTATCAGTGCAACCT+GGG | + | chr3_3:84880509-84880528 | Msa0479720:CDS | 45.0% | |
| TTACGTGAAATTGCAGTCCC+TGG | + | chr3_3:84880557-84880576 | Msa0479720:CDS | 45.0% | |
| TACGTGAAATTGCAGTCCCT+GGG | + | chr3_3:84880558-84880577 | Msa0479720:CDS | 45.0% | |
| ! | CTCCGAGTTTCAAGTCAATC+AGG | + | chr3_3:84880589-84880608 | Msa0479720:CDS | 45.0% |
| GGGGACAAAAACCTGAAATG+TGG | - | chr3_3:84880817-84880836 | None:intergenic | 45.0% | |
| TCACACCCGTGTCTGTTATA+TGG | + | chr3_3:84880900-84880919 | Msa0479720:CDS | 45.0% | |
| ATGCGACTAACACTGAAGGA+TGG | - | chr3_3:84880954-84880973 | None:intergenic | 45.0% | |
| TGCATTGCGAATATTCGTGG+TGG | + | chr3_3:84881005-84881024 | Msa0479720:CDS | 45.0% | |
| ATTGCGAATATTCGTGGTGG+TGG | + | chr3_3:84881008-84881027 | Msa0479720:CDS | 45.0% | |
| !! | ATTCGTGGTGGTGGAGAATA+TGG | + | chr3_3:84881017-84881036 | Msa0479720:CDS | 45.0% |
| !! | TTCGTGGTGGTGGAGAATAT+GGG | + | chr3_3:84881018-84881037 | Msa0479720:CDS | 45.0% |
| GTGGAGAATATGGGGAAGAA+TGG | + | chr3_3:84881027-84881046 | Msa0479720:CDS | 45.0% | |
| TGGTGAATACCTTGTGTCCA+CGG | + | chr3_3:84881106-84881125 | Msa0479720:CDS | 45.0% | |
| CGATGCATAACTTTCTGGGT+TGG | - | chr3_3:84881139-84881158 | None:intergenic | 45.0% | |
| CCCAGAAAGTTATGCATCGA+AGG | + | chr3_3:84881140-84881159 | Msa0479720:CDS | 45.0% | |
| !! | AGCAATGGTGGACTTCTTGT+TGG | + | chr3_3:84881167-84881186 | Msa0479720:CDS | 45.0% |
| GTGCTTGCATAAATCAGGTC+TGG | + | chr3_3:84881189-84881208 | Msa0479720:intron | 45.0% | |
| ! | ATTGGCTCATGTTGGCGTTA+TGG | + | chr3_3:84881328-84881347 | Msa0479720:CDS | 45.0% |
| TTGGCGTTATGGACATGCTA+CGG | + | chr3_3:84881339-84881358 | Msa0479720:CDS | 45.0% | |
| CATGCTTGGACCTCAGATTA+TGG | + | chr3_3:84881456-84881475 | Msa0479720:CDS | 45.0% | |
| GTCTGCACAACCATAATCTG+AGG | - | chr3_3:84881469-84881488 | None:intergenic | 45.0% | |
| ! | GTAAGTGCTGTTAGTGGAAG+CGG | + | chr3_3:84881629-84881648 | Msa0479720:intron | 45.0% |
| ! | TAAGTGCTGTTAGTGGAAGC+GGG | + | chr3_3:84881630-84881649 | Msa0479720:intron | 45.0% |
| TGTTAGTGGAAGCGGGATAA+TGG | + | chr3_3:84881637-84881656 | Msa0479720:intron | 45.0% | |
| ! | CCTTTTCGTCCATCCACATA+TGG | - | chr3_3:84881685-84881704 | None:intergenic | 45.0% |
| CCATATGTGGATGGACGAAA+AGG | + | chr3_3:84881682-84881701 | Msa0479720:intron | 45.0% | |
| CTGTGAGACAATCCCTTTGT+TGG | + | chr3_3:84881837-84881856 | Msa0479720:intron | 45.0% | |
| TCTTAAGGGGAATGGTTGGT+TGG | + | chr3_3:84882210-84882229 | Msa0479720:intron | 45.0% | |
| TTCTAGCAGCATAGACTGCA+TGG | + | chr3_3:84882247-84882266 | Msa0479720:intron | 45.0% | |
| GAGAATCCTCAACTTATGCC+AGG | - | chr3_3:84882288-84882307 | None:intergenic | 45.0% | |
| GCCGTCAACAACATAGTTGA+TGG | - | chr3_3:84882564-84882583 | None:intergenic | 45.0% | |
| TTGAAGCTATTGGCGGTTAG+TGG | + | chr3_3:84882618-84882637 | Msa0479720:intron | 45.0% | |
| TGAAGCTATTGGCGGTTAGT+GGG | + | chr3_3:84882619-84882638 | Msa0479720:intron | 45.0% | |
| ! | ATGAGTTTTTCCTCCCACAG+TGG | - | chr3_3:84882789-84882808 | None:intergenic | 45.0% |
| ACTGCATGGTCTGCAACAAT+TGG | - | chr3_3:84882872-84882891 | None:intergenic | 45.0% | |
| ATTGACTGCAAAGCTGGACA+TGG | + | chr3_3:84882948-84882967 | Msa0479720:CDS | 45.0% | |
| GGGTCGTCCAACAAAGAAAA+TGG | + | chr3_3:84882974-84882993 | Msa0479720:CDS | 45.0% | |
| !!! | AAAATTTAAGTTAAATAAAT+TGG | - | chr3_3:84878305-84878324 | None:intergenic | 5.0% |
| AAATCGCCGACCCTTATCGA+TGG | + | chr3_3:84877800-84877819 | Msa0479720:CDS | 50.0% | |
| GTGCTTGAAGGCCAGTGTTA+TGG | - | chr3_3:84878077-84878096 | None:intergenic | 50.0% | |
| !! | TAACACTGGCCTTCAAGCAC+AGG | + | chr3_3:84878077-84878096 | Msa0479720:CDS | 50.0% |
| TAGTTTGGAGGGAGAACCAC+AGG | + | chr3_3:84878626-84878645 | Msa0479720:intron | 50.0% | |
| GCTTATGCGCTTAGTTCCAG+TGG | + | chr3_3:84878732-84878751 | Msa0479720:CDS | 50.0% | |
| !! | CTTACTTGGGTGCTGGATAG+CGG | - | chr3_3:84878963-84878982 | None:intergenic | 50.0% |
| GACATCACTTACTTGGGTGC+TGG | - | chr3_3:84878970-84878989 | None:intergenic | 50.0% | |
| GATGGAGAAGTGGTAGATGC+TGG | + | chr3_3:84879239-84879258 | Msa0479720:CDS | 50.0% | |
| GAGTCCGCATGTGCTGTAAA+TGG | + | chr3_3:84880308-84880327 | Msa0479720:CDS | 50.0% | |
| TGCACGGCGTGAAGATAATG+TGG | + | chr3_3:84880451-84880470 | Msa0479720:CDS | 50.0% | |
| TATCAGTGCAACCTGGGAAC+AGG | + | chr3_3:84880515-84880534 | Msa0479720:CDS | 50.0% | |
| ATCAGTGCAACCTGGGAACA+GGG | + | chr3_3:84880516-84880535 | Msa0479720:CDS | 50.0% | |
| ACAGTGAGGACATGCAGCAT+CGG | - | chr3_3:84880629-84880648 | None:intergenic | 50.0% | |
| CCTGTACCCATGCAGACTAA+AGG | - | chr3_3:84880735-84880754 | None:intergenic | 50.0% | |
| CCTTTAGTCTGCATGGGTAC+AGG | + | chr3_3:84880732-84880751 | Msa0479720:intron | 50.0% | |
| !! | TCGTGGTGGTGGAGAATATG+GGG | + | chr3_3:84881019-84881038 | Msa0479720:CDS | 50.0% |
| GGGGAAGAATGGCATAAAGC+AGG | + | chr3_3:84881038-84881057 | Msa0479720:CDS | 50.0% | |
| GGTGAATACCTTGTGTCCAC+GGG | + | chr3_3:84881107-84881126 | Msa0479720:CDS | 50.0% | |
| TGCATCGAAGGTGGAAGCAA+TGG | + | chr3_3:84881152-84881171 | Msa0479720:CDS | 50.0% | |
| ATCGAAGGTGGAAGCAATGG+TGG | + | chr3_3:84881155-84881174 | Msa0479720:CDS | 50.0% | |
| ! | TGGGAAGTGTGGCCTAGAAA+TGG | - | chr3_3:84881233-84881252 | None:intergenic | 50.0% |
| GAGCTGTTGAATGGGAAGTG+TGG | - | chr3_3:84881244-84881263 | None:intergenic | 50.0% | |
| GTACAGAGACCTGAGCTCTT+TGG | + | chr3_3:84881299-84881318 | Msa0479720:intron | 50.0% | |
| AATGCACAGCCAAAGAGCTC+AGG | - | chr3_3:84881311-84881330 | None:intergenic | 50.0% | |
| TGAGCTCTTTGGCTGTGCAT+TGG | + | chr3_3:84881310-84881329 | Msa0479720:CDS | 50.0% | |
| TTGTCAGGATGCTGTTCCCA+TGG | - | chr3_3:84882528-84882547 | None:intergenic | 50.0% | |
| TCATTCTCGTGTGACCACTG+TGG | + | chr3_3:84882772-84882791 | Msa0479720:intron | 50.0% | |
| CATTCTCGTGTGACCACTGT+GGG | + | chr3_3:84882773-84882792 | Msa0479720:intron | 50.0% | |
| !! | TGTCGCATTGACTGCAAAGC+TGG | + | chr3_3:84882942-84882961 | Msa0479720:CDS | 50.0% |
| CGAACCTCTGCAATATCCCG+CGG | + | chr3_3:84877735-84877754 | Msa0479720:CDS | 55.0% | |
| AGTCGCCCAATCACTACCAC+TGG | - | chr3_3:84878751-84878770 | None:intergenic | 55.0% | |
| ACTCGGAGCGATCAAACCCA+GGG | - | chr3_3:84880577-84880596 | None:intergenic | 55.0% | |
| AACTCGGAGCGATCAAACCC+AGG | - | chr3_3:84880578-84880597 | None:intergenic | 55.0% | |
| GGGTATAACCCGTGGACACA+AGG | - | chr3_3:84881118-84881137 | None:intergenic | 55.0% | |
| ! | TCTGGGTTGGGTATAACCCG+TGG | - | chr3_3:84881126-84881145 | None:intergenic | 55.0% |
| !! | GGCTGTGCATTGGCTCATGT+TGG | + | chr3_3:84881320-84881339 | Msa0479720:CDS | 55.0% |
| ! | AGTGGAAGCGGGATAATGGC+AGG | + | chr3_3:84881641-84881660 | Msa0479720:intron | 55.0% |
| ! | GTGGAAGCGGGATAATGGCA+GGG | + | chr3_3:84881642-84881661 | Msa0479720:intron | 55.0% |
| GGTCGCCGGACATTATGCAA+TGG | - | chr3_3:84882507-84882526 | None:intergenic | 55.0% | |
| TGCATAATGTCCGGCGACCA+TGG | + | chr3_3:84882508-84882527 | Msa0479720:CDS | 55.0% | |
| GCATAATGTCCGGCGACCAT+GGG | + | chr3_3:84882509-84882528 | Msa0479720:CDS | 55.0% | |
| GTTGTCACATAGGGGGGGAT+AGG | + | chr3_3:84882746-84882765 | Msa0479720:intron | 55.0% | |
| GGGTGGTAAATTGCGACGAC+TGG | - | chr3_3:84882813-84882832 | None:intergenic | 55.0% | |
| CTGCAAAGCTGGACATGGAG+CGG | + | chr3_3:84882953-84882972 | Msa0479720:CDS | 55.0% | |
| TGCAAAGCTGGACATGGAGC+GGG | + | chr3_3:84882954-84882973 | Msa0479720:CDS | 55.0% | |
| !! | GGTCGGCGATTTTGACGCCA+TGG | - | chr3_3:84877792-84877811 | None:intergenic | 60.0% |
| GATCAGGAGTCCCTGTTCCC+AGG | - | chr3_3:84880529-84880548 | None:intergenic | 60.0% | |
| ! | AGCGGGATAATGGCAGGGTC+CGG | + | chr3_3:84881647-84881666 | Msa0479720:intron | 60.0% |
| GATGCTGTTCCCATGGTCGC+CGG | - | chr3_3:84882521-84882540 | None:intergenic | 60.0% | |
| TCTCGTGTGACCACTGTGGG+AGG | + | chr3_3:84882776-84882795 | Msa0479720:intron | 60.0% | |
| CGAGCCGCGGGATATTGCAG+AGG | - | chr3_3:84877742-84877761 | None:intergenic | 65.0% | |
| AGAGTCGTCTCTGCGAGCCG+CGG | - | chr3_3:84877755-84877774 | None:intergenic | 65.0% | |
| GAGTCGTCTCTGCGAGCCGC+GGG | - | chr3_3:84877754-84877773 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 84877612 | 84883468 | 84877612 | ID=Msa0479720;Name=Msa0479720 |
| chr3_3 | mRNA | 84877612 | 84883468 | 84877612 | ID=Msa0479720-mRNA-1;Parent=Msa0479720;Name=Msa0479720-mRNA-1;_AED=0.09;_eAED=0.09;_QI=109|0.90|0.91|1|0.90|0.91|12|325|694 |
| chr3_3 | exon | 84877612 | 84877821 | 84877612 | ID=Msa0479720-mRNA-1:exon:24139;Parent=Msa0479720-mRNA-1 |
| chr3_3 | exon | 84877897 | 84878116 | 84877897 | ID=Msa0479720-mRNA-1:exon:24140;Parent=Msa0479720-mRNA-1 |
| chr3_3 | exon | 84878726 | 84878824 | 84878726 | ID=Msa0479720-mRNA-1:exon:24141;Parent=Msa0479720-mRNA-1 |
| chr3_3 | exon | 84878907 | 84878977 | 84878907 | ID=Msa0479720-mRNA-1:exon:24142;Parent=Msa0479720-mRNA-1 |
| chr3_3 | exon | 84879238 | 84879400 | 84879238 | ID=Msa0479720-mRNA-1:exon:24143;Parent=Msa0479720-mRNA-1 |
| chr3_3 | exon | 84880017 | 84880610 | 84880017 | ID=Msa0479720-mRNA-1:exon:24144;Parent=Msa0479720-mRNA-1 |
| chr3_3 | exon | 84880825 | 84881205 | 84880825 | ID=Msa0479720-mRNA-1:exon:24145;Parent=Msa0479720-mRNA-1 |
| chr3_3 | exon | 84881305 | 84881380 | 84881305 | ID=Msa0479720-mRNA-1:exon:24146;Parent=Msa0479720-mRNA-1 |
| chr3_3 | exon | 84881454 | 84881517 | 84881454 | ID=Msa0479720-mRNA-1:exon:24147;Parent=Msa0479720-mRNA-1 |
| chr3_3 | exon | 84882497 | 84882632 | 84882497 | ID=Msa0479720-mRNA-1:exon:24148;Parent=Msa0479720-mRNA-1 |
| chr3_3 | exon | 84882882 | 84882995 | 84882882 | ID=Msa0479720-mRNA-1:exon:24149;Parent=Msa0479720-mRNA-1 |
| chr3_3 | exon | 84883078 | 84883468 | 84883078 | ID=Msa0479720-mRNA-1:exon:24150;Parent=Msa0479720-mRNA-1 |
| chr3_3 | five_prime_UTR | 84877612 | 84877720 | 84877612 | ID=Msa0479720-mRNA-1:five_prime_utr;Parent=Msa0479720-mRNA-1 |
| chr3_3 | CDS | 84877721 | 84877821 | 84877721 | ID=Msa0479720-mRNA-1:cds;Parent=Msa0479720-mRNA-1 |
| chr3_3 | CDS | 84877897 | 84878116 | 84877897 | ID=Msa0479720-mRNA-1:cds;Parent=Msa0479720-mRNA-1 |
| chr3_3 | CDS | 84878726 | 84878824 | 84878726 | ID=Msa0479720-mRNA-1:cds;Parent=Msa0479720-mRNA-1 |
| chr3_3 | CDS | 84878907 | 84878977 | 84878907 | ID=Msa0479720-mRNA-1:cds;Parent=Msa0479720-mRNA-1 |
| chr3_3 | CDS | 84879238 | 84879400 | 84879238 | ID=Msa0479720-mRNA-1:cds;Parent=Msa0479720-mRNA-1 |
| chr3_3 | CDS | 84880017 | 84880610 | 84880017 | ID=Msa0479720-mRNA-1:cds;Parent=Msa0479720-mRNA-1 |
| chr3_3 | CDS | 84880825 | 84881205 | 84880825 | ID=Msa0479720-mRNA-1:cds;Parent=Msa0479720-mRNA-1 |
| chr3_3 | CDS | 84881305 | 84881380 | 84881305 | ID=Msa0479720-mRNA-1:cds;Parent=Msa0479720-mRNA-1 |
| chr3_3 | CDS | 84881454 | 84881517 | 84881454 | ID=Msa0479720-mRNA-1:cds;Parent=Msa0479720-mRNA-1 |
| chr3_3 | CDS | 84882497 | 84882632 | 84882497 | ID=Msa0479720-mRNA-1:cds;Parent=Msa0479720-mRNA-1 |
| chr3_3 | CDS | 84882882 | 84882995 | 84882882 | ID=Msa0479720-mRNA-1:cds;Parent=Msa0479720-mRNA-1 |
| chr3_3 | CDS | 84883078 | 84883143 | 84883078 | ID=Msa0479720-mRNA-1:cds;Parent=Msa0479720-mRNA-1 |
| chr3_3 | three_prime_UTR | 84883144 | 84883468 | 84883144 | ID=Msa0479720-mRNA-1:three_prime_utr;Parent=Msa0479720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
