AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0033110

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0033110 MtrunA17_Chr1g0191671 94.692 584 11 9 1 571 1 577 0.0 1034
Msa0033110 MtrunA17_Chr2g0287751 68.354 79 25 0 1 79 1 79 1.60e-29 122
Msa0033110 MtrunA17_Chr1g0208301 66.667 78 23 1 1 75 1 78 3.77e-28 116
Msa0033110 MtrunA17_Chr0c22g0493881 64.103 78 28 0 1 78 1 78 7.51e-27 112
Msa0033110 MtrunA17_Chr4g0065651 64.103 78 28 0 1 78 1 78 8.84e-27 114
Msa0033110 MtrunA17_Chr4g0065621 64.103 78 28 0 1 78 1 78 5.29e-26 110
Msa0033110 MtrunA17_Chr2g0287741 54.945 91 39 1 12 102 17 105 6.61e-20 93.6
Msa0033110 MtrunA17_Chr7g0269081 57.143 70 30 0 5 74 17 86 1.34e-19 89.7
Msa0033110 MtrunA17_Chr3g0111541 52.113 71 34 0 3 73 5 75 1.12e-18 85.1
Msa0033110 MtrunA17_Chr4g0067291 55.224 67 30 0 7 73 71 137 4.19e-18 86.3
Msa0033110 MtrunA17_Chr7g0272571 54.545 66 30 0 9 74 32 97 3.08e-17 83.6
Msa0033110 MtrunA17_Chr1g0192131 52.174 69 32 1 7 74 12 80 1.28e-16 82.0
Msa0033110 MtrunA17_Chr8g0382721 60.656 61 24 0 14 74 33 93 4.26e-15 72.8
Msa0033110 MtrunA17_Chr2g0296001 54.412 68 31 0 7 74 70 137 4.38e-14 73.9
Msa0033110 MtrunA17_Chr3g0124411 54.545 66 30 0 9 74 29 94 4.42e-14 70.1
Msa0033110 MtrunA17_Chr2g0285561 39.474 76 45 1 4 78 2 77 9.39e-13 69.3
Msa0033110 MtrunA17_Chr6g0448861 41.791 67 38 1 9 74 29 95 1.18e-12 65.9
Msa0033110 MtrunA17_Chr1g0189221 43.243 74 42 0 1 74 44 117 4.44e-12 65.1
Msa0033110 MtrunA17_Chr5g0407821 40.278 72 43 0 3 74 16 87 6.68e-12 63.5
Msa0033110 MtrunA17_Chr4g0036931 41.096 73 42 1 3 74 21 93 8.62e-12 63.5
Msa0033110 MtrunA17_Chr7g0251491 40.541 74 43 1 2 74 40 113 9.29e-12 63.9
Msa0033110 MtrunA17_Chr5g0405811 42.647 68 38 1 8 74 27 94 1.58e-11 62.8
Msa0033110 MtrunA17_Chr4g0050571 44.286 70 38 1 10 79 101 169 2.99e-11 62.4
Msa0033110 MtrunA17_Chr1g0160201 39.394 66 40 0 9 74 24 89 3.33e-11 61.6
Msa0033110 MtrunA17_Chr3g0115421 37.349 83 49 1 14 93 30 112 3.84e-11 61.6
Msa0033110 MtrunA17_Chr2g0325601 41.026 78 45 1 14 91 6 82 4.43e-11 61.2
Msa0033110 MtrunA17_Chr1g0198341 42.647 68 39 0 7 74 1 68 5.09e-11 58.9
Msa0033110 MtrunA17_Chr3g0094841 47.761 67 34 1 9 74 115 181 6.26e-11 62.8
Msa0033110 MtrunA17_Chr5g0422891 40.323 62 37 0 14 75 29 90 9.08e-11 60.5
Msa0033110 MtrunA17_Chr6g0485081 41.176 68 39 1 7 74 62 128 9.35e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0033110 AT5G19090.2 63.366 101 36 1 1 101 1 100 1.59e-32 130
Msa0033110 AT5G19090.3 63.366 101 36 1 1 101 1 100 1.59e-32 130
Msa0033110 AT5G19090.5 63.366 101 36 1 1 101 1 100 5.85e-32 130
Msa0033110 AT5G19090.4 63.366 101 36 1 1 101 1 100 5.85e-32 130
Msa0033110 AT5G19090.1 63.366 101 36 1 1 101 1 100 5.85e-32 130
Msa0033110 AT3G05220.1 57.143 112 43 1 1 112 1 107 1.90e-29 123
Msa0033110 AT1G23000.1 47.656 128 54 4 6 132 9 124 6.41e-24 103
Msa0033110 AT1G23000.2 47.656 128 54 4 6 132 69 184 2.44e-23 103
Msa0033110 AT5G27690.1 47.059 85 45 0 7 91 27 111 2.98e-22 99.0
Msa0033110 AT5G37860.1 58.462 65 27 0 9 73 9 73 5.70e-19 87.4
Msa0033110 AT1G56210.1 58.730 63 26 0 10 72 40 102 2.28e-17 84.3
Msa0033110 AT1G06330.1 50.820 61 30 0 14 74 6 66 1.27e-13 68.9
Msa0033110 AT4G08570.1 47.059 68 35 1 8 74 24 91 5.41e-13 67.4
Msa0033110 AT1G22990.1 41.975 81 44 2 3 82 24 102 6.30e-12 64.3
Msa0033110 AT2G37390.2 47.692 65 33 1 10 74 180 243 7.44e-12 66.2
Msa0033110 AT2G37390.1 47.692 65 33 1 10 74 181 244 7.46e-12 66.2
Msa0033110 AT3G02960.1 41.892 74 42 1 3 75 119 192 1.51e-11 65.1
Msa0033110 AT5G02600.2 49.231 65 32 1 10 74 250 313 2.08e-11 65.9
Msa0033110 AT5G02600.1 49.231 65 32 1 10 74 250 313 2.08e-11 65.9
Msa0033110 AT1G22990.2 42.254 71 40 1 13 82 27 97 2.61e-11 62.4
Msa0033110 AT4G23882.1 46.970 66 34 1 9 73 77 142 3.34e-11 64.7
Msa0033110 AT1G71050.1 40.909 66 39 0 9 74 27 92 3.36e-11 62.0
Msa0033110 AT3G56891.1 45.902 61 33 0 14 74 20 80 4.56e-11 62.0
Msa0033110 AT5G17450.1 42.424 66 38 0 9 74 25 90 6.42e-11 61.2

Find 185 sgRNAs with CRISPR-Local

Find 264 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCATTGCAACAAAATTTAA+TGG 0.134800 1_1:+60356457 None:intergenic
AGTAGTGGCTAGTTTGTTTC+AGG 0.151067 1_1:-60356510 Msa0033110:three_prime_UTR
AGGAAAATGTGCAAGATTTA+AGG 0.169787 1_1:-60356434 Msa0033110:three_prime_UTR
ATTATTACCATGTCCATTAT+TGG 0.170658 1_1:+60357030 None:intergenic
GAAGAAATCATACAATTTAA+TGG 0.241291 1_1:+60356257 None:intergenic
GGGCCTCCAGGCAATGGATT+TGG 0.269551 1_1:-60357682 Msa0033110:CDS
ACATCCATCAATGAACTATA+TGG 0.284194 1_1:-60356636 Msa0033110:CDS
GCCAAGGGCAATGCCAATAA+TGG 0.314955 1_1:-60357043 Msa0033110:CDS
GATGGAGGTAAGAAGAATAA+AGG 0.317363 1_1:-60357391 Msa0033110:CDS
TGCTGTTGCTGTTGCTGATA+AGG 0.318669 1_1:+60356803 None:intergenic
CTAGTTAAGTTTCTAGGGCT+TGG 0.332945 1_1:-60357274 Msa0033110:CDS
CAGGGAAACATGCTGAACTA+TGG 0.336084 1_1:-60358041 Msa0033110:CDS
AAGAAATCATACAATTTAAT+GGG 0.336801 1_1:+60356258 None:intergenic
CTGCCGGCATGCTCCTCATT+TGG 0.337899 1_1:+60356903 None:intergenic
TGCTGTTGCTGATAAGGATT+TGG 0.339759 1_1:+60356809 None:intergenic
GCCGGCAGTGCAAGGGTTAC+CGG 0.341648 1_1:-60356888 Msa0033110:CDS
AATGGACATGGTAATAATAA+TGG 0.358191 1_1:-60357025 Msa0033110:CDS
AGAAGAGAAGAAATAGTTGT+TGG 0.363777 1_1:+60358776 None:intergenic
ACAAGATATGATGAAAATTC+AGG 0.364742 1_1:-60358708 Msa0033110:intron
GGCCTCCAGGCAATGGATTT+GGG 0.369230 1_1:-60357681 Msa0033110:CDS
GGGGAAAAGCAAAAGGGTGG+TGG 0.371759 1_1:-60357370 Msa0033110:CDS
CAGAATCAAAAGGGTCAAAA+AGG 0.373373 1_1:-60357907 Msa0033110:CDS
GGGGCAGCTGCGGCGATGAA+TGG 0.373441 1_1:-60356863 Msa0033110:CDS
ATGGTAATAATAATGGTAAT+GGG 0.379392 1_1:-60357018 Msa0033110:CDS
ACCATTACCTGGGATGTTCA+TGG 0.380238 1_1:+60357555 None:intergenic
AACATGTTTCTGAGATTTGT+TGG 0.389321 1_1:+60357828 None:intergenic
CCTCCTCCTTTACCATTACC+TGG 0.392465 1_1:+60357544 None:intergenic
ATGGAGGTAAGAAGAATAAA+GGG 0.400340 1_1:-60357390 Msa0033110:CDS
GAGGATGAAGAAGAGGAGTT+TGG 0.403036 1_1:-60357733 Msa0033110:CDS
TCTGATTCATTGCACCCATC+TGG 0.405299 1_1:+60356975 None:intergenic
GAAAAGCAAAAGGGTGGTGG+GGG 0.405813 1_1:-60357367 Msa0033110:CDS
AAAAGTGGTAAGGGTGGAAA+TGG 0.412152 1_1:-60357091 Msa0033110:CDS
CAGTGCAAGGGTTACCGGCC+GGG 0.416864 1_1:-60356883 Msa0033110:CDS
TCCATTATTGGCATTGCCCT+TGG 0.417589 1_1:+60357042 None:intergenic
GGAAAAGCAAAAGGGTGGTG+GGG 0.418059 1_1:-60357368 Msa0033110:CDS
GCCGGTAACCCTTGCACTGC+CGG 0.421629 1_1:+60356887 None:intergenic
CATGGTAATAATAATGGTAA+TGG 0.423098 1_1:-60357019 Msa0033110:CDS
TAGAGGCAAAAGGGTATTGT+TGG 0.425176 1_1:+60358829 None:intergenic
GGTGGAAATGGAAATGGAAA+TGG 0.432449 1_1:-60357079 Msa0033110:CDS
AATGGTCGTGGGCCACAGCT+AGG 0.432834 1_1:-60357613 Msa0033110:CDS
AGTGCAAGGGTTACCGGCCG+GGG 0.435816 1_1:-60356882 Msa0033110:CDS
GGCACCATGTCCTGCTCATA+AGG 0.437152 1_1:+60356349 None:intergenic
GAATAAAGGGGAAAAGCAAA+AGG 0.443691 1_1:-60357377 Msa0033110:CDS
GGTAATGGAGGTGGTAAGAA+AGG 0.449463 1_1:-60357421 Msa0033110:CDS
TATCCACAACATATGATGTA+TGG 0.452805 1_1:-60356671 Msa0033110:CDS
AGAAGTGATAAATTGATTGC+CGG 0.453817 1_1:+60358933 None:intergenic
TGCAAATGGATAATAACAAA+GGG 0.454184 1_1:-60357948 Msa0033110:CDS
TTATTGGCATTGCCCTTGGC+AGG 0.454606 1_1:+60357046 None:intergenic
AAACTGCTTCAGAAAATTGA+AGG 0.457319 1_1:-60358504 Msa0033110:intron
ACCTATGCAAATGCAGATGA+AGG 0.459346 1_1:-60357476 Msa0033110:CDS
GTAATGGAGGTGGTAAGAAA+GGG 0.460661 1_1:-60357420 Msa0033110:CDS
ACATGTTTCTGAGATTTGTT+GGG 0.462682 1_1:+60357829 None:intergenic
GGGAAAAGCAAAAGGGTGGT+GGG 0.463087 1_1:-60357369 Msa0033110:CDS
TCTGGCCCATTGGACCCATA+TGG 0.464410 1_1:+60356993 None:intergenic
CAACAAGCCTCAGAATCAAA+AGG 0.465567 1_1:-60357917 Msa0033110:CDS
GGTAAGGGTGGAAATGGAAA+TGG 0.465972 1_1:-60357085 Msa0033110:CDS
TCACTGAAAACATGAGTGAT+TGG 0.466485 1_1:+60356578 None:intergenic
TGCTGCCCAAATCCATTGCC+TGG 0.470924 1_1:+60357676 None:intergenic
GTGGAAATGGAAATGGAAAT+GGG 0.471325 1_1:-60357078 Msa0033110:CDS
CAAGGGAAGGTGTTGGTGAC+AGG 0.475651 1_1:-60358105 Msa0033110:CDS
AGGGTATTGTTGGAATGCAT+TGG 0.476901 1_1:+60358839 None:intergenic
TCCTCATGGTAAAAGTGGTA+AGG 0.478115 1_1:-60357101 Msa0033110:CDS
TCAGTTTAAGAACATGCAAA+TGG 0.478310 1_1:-60357962 Msa0033110:CDS
AATGGTAAAGGAGGAGGTGG+TGG 0.479249 1_1:-60357538 Msa0033110:CDS
CCACAGCTAGGGCCTGGTGA+TGG 0.480756 1_1:-60357601 Msa0033110:CDS
AGGGAAACATGCTGAACTAT+GGG 0.482972 1_1:-60358040 Msa0033110:CDS
AATGGGTCAGATGGGTTCAA+TGG 0.483632 1_1:-60356927 Msa0033110:CDS
ATTGCACCCATCTGGCCCAT+TGG 0.483802 1_1:+60356983 None:intergenic
AAGGGTAAAAGTGGAAATTA+CGG 0.485308 1_1:-60357457 Msa0033110:CDS
ATCACTCCTCATGGTAAAAG+TGG 0.485671 1_1:-60357106 Msa0033110:CDS
ATTCATCGCCGCAGCTGCCC+CGG 0.485684 1_1:+60356865 None:intergenic
ATGAATAAGATGGGTCCAAT+GGG 0.487266 1_1:-60356944 Msa0033110:CDS
GCAGTGCAAGGGTTACCGGC+CGG 0.488422 1_1:-60356884 Msa0033110:CDS
GGCCATGGTCAAGGGCCTCC+AGG 0.488629 1_1:-60357694 Msa0033110:CDS
CATGGTCATGGCCATGGTCA+AGG 0.488816 1_1:-60357703 Msa0033110:CDS
GAGGAGTGATATCAAAGTCT+TGG 0.489452 1_1:+60357119 None:intergenic
CGTGGGCCACAGCTAGGGCC+TGG 0.491267 1_1:-60357607 Msa0033110:CDS
ATCGCCGCAGCTGCCCCGGC+CGG 0.491724 1_1:+60356869 None:intergenic
GATGGGTCCAATGGGTCAGA+TGG 0.493165 1_1:-60356936 Msa0033110:CDS
AGGAGCATGCCGGCAGTGCA+AGG 0.498242 1_1:-60356896 Msa0033110:CDS
AAAATATATCCGTACTACTT+AGG 0.499474 1_1:+60358889 None:intergenic
GTTACCGGCCGGGGCAGCTG+CGG 0.501977 1_1:-60356873 Msa0033110:CDS
ACCAATGCCATCACACCCTA+TGG 0.502702 1_1:-60356606 Msa0033110:CDS
GCCATGAACATCCCAGGTAA+TGG 0.503054 1_1:-60357556 Msa0033110:CDS
CCTGGGATGTTCATGGCAGC+AGG 0.506128 1_1:+60357562 None:intergenic
TGCCTGGAGGCCCTTGACCA+TGG 0.506822 1_1:+60357692 None:intergenic
GGTGATGGTATGATGATGAA+TGG 0.512661 1_1:-60357586 Msa0033110:CDS
GGTCAAGGGCCTCCAGGCAA+TGG 0.514555 1_1:-60357688 Msa0033110:CDS
CATCCATCAATGAACTATAT+GGG 0.516767 1_1:-60356635 Msa0033110:CDS
GCATAATAACAAAATGATGA+TGG 0.517505 1_1:-60357647 Msa0033110:CDS
GATGGCAGCAATGAATAAGA+TGG 0.517515 1_1:-60356954 Msa0033110:CDS
ATTGAACCCATCTGACCCAT+TGG 0.518800 1_1:+60356929 None:intergenic
TCTGTAGAATTGTCTTCTCA+AGG 0.518947 1_1:-60358565 Msa0033110:intron
TATGGGTCCAATGGGCCAGA+TGG 0.519343 1_1:-60356990 Msa0033110:CDS
ATTTGCATGTTCTTAAACTG+AGG 0.523768 1_1:+60357964 None:intergenic
ATGAATGGTGGCTATTATCA+AGG 0.526298 1_1:-60356848 Msa0033110:CDS
TGTTTATTATCTTGCAGCAC+CGG 0.528186 1_1:-60358952 Msa0033110:five_prime_UTR
ATGGTCGTGGGCCACAGCTA+GGG 0.529327 1_1:-60357612 Msa0033110:CDS
ATGGGTCCAATGGGCCAGAT+GGG 0.532006 1_1:-60356989 Msa0033110:CDS
CTGAATGTGCCTAAGTAGTA+CGG 0.535365 1_1:-60358898 Msa0033110:five_prime_UTR
ATATAGTTCATTGATGGATG+TGG 0.537347 1_1:+60356638 None:intergenic
TTGTGAAGGTTGTGAGCAGA+AGG 0.537353 1_1:-60358532 Msa0033110:CDS
CTCCTCCTTTACCATTACCT+GGG 0.537413 1_1:+60357545 None:intergenic
AACATCCCAGGTAATGGTAA+AGG 0.537780 1_1:-60357550 Msa0033110:CDS
ATAGCAACAACAACAGCAAA+GGG 0.537937 1_1:-60357189 Msa0033110:CDS
GGGTGTGATGGCATTGGTGG+CGG 0.538638 1_1:+60356611 None:intergenic
GCTATGATGCAGAATGGTCG+TGG 0.539141 1_1:-60357625 Msa0033110:CDS
CACGGACATGGTCATGGCCA+TGG 0.540291 1_1:-60357709 Msa0033110:CDS
GGTCCCATATAGTTCATTGA+TGG 0.543358 1_1:+60356632 None:intergenic
ATGCAGATGAAGGGTAAAAG+TGG 0.544101 1_1:-60357466 Msa0033110:CDS
ATAGGGTGTGATGGCATTGG+TGG 0.545253 1_1:+60356608 None:intergenic
GCCATAGGGTGTGATGGCAT+TGG 0.546440 1_1:+60356605 None:intergenic
GAGGAGTTTGGTCACGGACA+TGG 0.551855 1_1:-60357721 Msa0033110:CDS
ATAATAAACAGCTACAAACT+AGG 0.552187 1_1:+60358965 None:intergenic
TGGGTTCAATGGACCAAATG+AGG 0.553719 1_1:-60356916 Msa0033110:CDS
TAATGGAGGTGGTAAGAAAG+GGG 0.555785 1_1:-60357419 Msa0033110:CDS
ATGGTCATGGCCATGGTCAA+GGG 0.556259 1_1:-60357702 Msa0033110:CDS
CCCTTCATCTGCATTTGCAT+AGG 0.556545 1_1:+60357475 None:intergenic
AATGAATAAGATGGGTCCAA+TGG 0.557145 1_1:-60356945 Msa0033110:CDS
CCAGGTAATGGTAAAGGAGG+AGG 0.560490 1_1:-60357544 Msa0033110:CDS
TGGGAAAGGTGCTCCTGCCA+AGG 0.561931 1_1:-60357059 Msa0033110:CDS
GCAGCTGCGGCGATGAATGG+TGG 0.562369 1_1:-60356860 Msa0033110:CDS
AGGAGTGAATTAGGCACCAC+AGG 0.563041 1_1:+60356296 None:intergenic
GACTTTGATATCACTCCTCA+TGG 0.564860 1_1:-60357115 Msa0033110:CDS
CCTCCATACATCATATGTTG+TGG 0.564896 1_1:+60356668 None:intergenic
ACAACAACAACAGCAATACA+TGG 0.565187 1_1:-60356780 Msa0033110:CDS
GCACAGTTTCAAAATCCTAA+AGG 0.569465 1_1:-60357871 Msa0033110:CDS
CCTCATGGTAAAAGTGGTAA+GGG 0.569715 1_1:-60357100 Msa0033110:CDS
AAGTAATTAATTACTAGTAG+TGG 0.570079 1_1:-60356525 Msa0033110:three_prime_UTR
AACAAGCCTCAGAATCAAAA+GGG 0.570080 1_1:-60357916 Msa0033110:CDS
TTTGGTCACGGACATGGTCA+TGG 0.570828 1_1:-60357715 Msa0033110:CDS
GGTAATAATAATGGTAATGG+GGG 0.572168 1_1:-60357016 Msa0033110:CDS
GTAACGACAACCTTATGAGC+AGG 0.573000 1_1:-60356359 Msa0033110:three_prime_UTR
TGTGATACTCTGTCATTGAC+TGG 0.574552 1_1:+60356322 None:intergenic
ATGCAAATGGATAATAACAA+AGG 0.575532 1_1:-60357949 Msa0033110:CDS
AAGGTTAATATCCATTGTGA+AGG 0.575780 1_1:-60358546 Msa0033110:CDS
TGGTAATAATAATGGTAATG+GGG 0.579408 1_1:-60357017 Msa0033110:CDS
ATGGGTCCAATGGGTCAGAT+GGG 0.580478 1_1:-60356935 Msa0033110:CDS
GTGAATATAGATGCAGAACA+AGG 0.583193 1_1:-60358123 Msa0033110:CDS
GTGATGGTATGATGATGAAT+GGG 0.583869 1_1:-60357585 Msa0033110:CDS
GCAAATGGATAATAACAAAG+GGG 0.584331 1_1:-60357947 Msa0033110:CDS
TGAGTGATTGGATCTGCCAT+AGG 0.585575 1_1:+60356590 None:intergenic
CCTGCTGCCATGAACATCCC+AGG 0.587642 1_1:-60357562 Msa0033110:CDS
GGTAATGGTAAAGGAGGAGG+TGG 0.588777 1_1:-60357541 Msa0033110:CDS
AATAAAGGGGAAAAGCAAAA+GGG 0.595467 1_1:-60357376 Msa0033110:CDS
ATGGCAGCAATGAATAAGAT+GGG 0.598736 1_1:-60356953 Msa0033110:CDS
TATAGATGCAGAACAAGGGA+AGG 0.601009 1_1:-60358118 Msa0033110:CDS
GGATCTGCCATAGGGTGTGA+TGG 0.601407 1_1:+60356599 None:intergenic
CAACATATGATGTATGGAGG+AGG 0.605393 1_1:-60356665 Msa0033110:CDS
CCTATGCAAATGCAGATGAA+GGG 0.607502 1_1:-60357475 Msa0033110:CDS
TTCATCATCATACCATCACC+AGG 0.608129 1_1:+60357589 None:intergenic
AATAGCAACAACAACAGCAA+AGG 0.608297 1_1:-60357190 Msa0033110:CDS
AATGGAAATGGAAATGGGAA+AGG 0.608664 1_1:-60357073 Msa0033110:CDS
ATCCCAGGTAATGGTAAAGG+AGG 0.609225 1_1:-60357547 Msa0033110:CDS
ACTCTGTCATTGACTGGCAG+TGG 0.610829 1_1:+60356328 None:intergenic
GGGAAAGGTGCTCCTGCCAA+GGG 0.613724 1_1:-60357058 Msa0033110:CDS
GGACCAAATGAGGAGCATGC+CGG 0.615075 1_1:-60356906 Msa0033110:CDS
CATGGTAAAAGTGGTAAGGG+TGG 0.615769 1_1:-60357097 Msa0033110:CDS
TGCAGAACAAGGGAAGGTGT+TGG 0.615855 1_1:-60358112 Msa0033110:CDS
GGAGCATGCCGGCAGTGCAA+GGG 0.616628 1_1:-60356895 Msa0033110:CDS
GAAGAAGAGGAGTTTGGTCA+CGG 0.617819 1_1:-60357727 Msa0033110:CDS
GATGGGTGCAATGAATCAGA+TGG 0.620881 1_1:-60356972 Msa0033110:CDS
GGCAATGCCAATAATGGACA+TGG 0.622193 1_1:-60357037 Msa0033110:CDS
AATGGAGGTGGTAAGAAAGG+GGG 0.629262 1_1:-60357418 Msa0033110:CDS
CCATCACCAGGCCCTAGCTG+TGG 0.636272 1_1:+60357601 None:intergenic
AAAGGGGAAAAGCAAAAGGG+TGG 0.640635 1_1:-60357373 Msa0033110:CDS
TCATAAGGTTGTCGTTACAC+AGG 0.641578 1_1:+60356364 None:intergenic
CCACAACATATGATGTATGG+AGG 0.641920 1_1:-60356668 Msa0033110:CDS
ACAACCTTATGAGCAGGACA+TGG 0.650595 1_1:-60356353 Msa0033110:three_prime_UTR
GAGTGATTGGATCTGCCATA+GGG 0.655708 1_1:+60356591 None:intergenic
ATATGATGTATGGAGGAGGA+AGG 0.656963 1_1:-60356661 Msa0033110:CDS
AAACATGCTGAACTATGGGG+TGG 0.661564 1_1:-60358036 Msa0033110:CDS
TGAATATAGATGCAGAACAA+GGG 0.662709 1_1:-60358122 Msa0033110:CDS
TGGAGGTAAGAAGAATAAAG+GGG 0.662757 1_1:-60357389 Msa0033110:CDS
CAAATGGATAATAACAAAGG+GGG 0.663697 1_1:-60357946 Msa0033110:CDS
ATGATGGCTATGATGCAGAA+TGG 0.663851 1_1:-60357631 Msa0033110:CDS
CAGTTTCAAAATCCTAAAGG+AGG 0.665835 1_1:-60357868 Msa0033110:CDS
GAGGAATTTGATGAGAGTGA+TGG 0.668256 1_1:-60357787 Msa0033110:CDS
CAGCAACAACAAATGCAGCA+AGG 0.669858 1_1:-60356710 Msa0033110:CDS
TCTGCTCACAACCTTCACAA+TGG 0.671031 1_1:+60358535 None:intergenic
GGGAAACATGCTGAACTATG+GGG 0.688345 1_1:-60358039 Msa0033110:CDS
TGCCCAAATCCATTGCCTGG+AGG 0.700160 1_1:+60357679 None:intergenic
CTATGATGCAGAATGGTCGT+GGG 0.701836 1_1:-60357624 Msa0033110:CDS
TAAAAGTGGAAATTACGGTG+AGG 0.728158 1_1:-60357452 Msa0033110:CDS
ACAGAGTATCACATGTCCTG+TGG 0.743374 1_1:-60356312 Msa0033110:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATTTTGTCTTTTTTTTT+TGG - chr1_1:60358728-60358747 Msa0033110:exon 10.0%
!!! TTATTTTGTCTTTTTTTTTT+GGG - chr1_1:60358729-60358748 Msa0033110:exon 10.0%
!!! AGATATTTTTTTTTCTATAG+AGG + chr1_1:60356402-60356421 None:intergenic 15.0%
!!! TGAACTTTTTTATGTTTATA+TGG - chr1_1:60356951-60356970 Msa0033110:CDS 15.0%
!!! TATTTTGTCTTTTTTTTTTG+GGG - chr1_1:60358730-60358749 Msa0033110:exon 15.0%
!! AAGAAATCATACAATTTAAT+GGG + chr1_1:60358956-60358975 None:intergenic 15.0%
!! ATAAATAAGTAAGAAGAACA+AGG + chr1_1:60356534-60356553 None:intergenic 20.0%
!! AAACAAAAACTTTACTATGT+CGG - chr1_1:60356840-60356859 Msa0033110:CDS 20.0%
!! AAAAAACATGAAATTAAGGA+GGG + chr1_1:60356890-60356909 None:intergenic 20.0%
!!! ATCATTTTGTTATTATGCAT+AGG + chr1_1:60357562-60357581 None:intergenic 20.0%
!! AAAAATGGTAAAGGTAAAAA+CGG - chr1_1:60357901-60357920 Msa0033110:CDS 20.0%
!! ATGGTAATAATAATGGTAAT+GGG - chr1_1:60358193-60358212 Msa0033110:intron 20.0%
!! AAGTAATTAATTACTAGTAG+TGG - chr1_1:60358686-60358705 Msa0033110:intron 20.0%
!! GAAGAAATCATACAATTTAA+TGG + chr1_1:60358957-60358976 None:intergenic 20.0%
! ATAATAAACAGCTACAAACT+AGG + chr1_1:60356249-60356268 None:intergenic 25.0%
! AAAATATATCCGTACTACTT+AGG + chr1_1:60356325-60356344 None:intergenic 25.0%
!!! TTTTTTCTATAGAGGCAAAA+GGG + chr1_1:60356394-60356413 None:intergenic 25.0%
!!! TTTTTTTCTATAGAGGCAAA+AGG + chr1_1:60356395-60356414 None:intergenic 25.0%
! ACAAGATATGATGAAAATTC+AGG - chr1_1:60356503-60356522 Msa0033110:three_prime_UTR 25.0%
! AATCTGTACTTATGTTTAAC+TGG - chr1_1:60356603-60356622 Msa0033110:CDS 25.0%
!!! ACTTATGTTTAACTGGTTTT+TGG - chr1_1:60356610-60356629 Msa0033110:CDS 25.0%
! ACATGTTAACTTTACTATGT+CGG - chr1_1:60356798-60356817 Msa0033110:CDS 25.0%
! GAAAAAACATGAAATTAAGG+AGG + chr1_1:60356891-60356910 None:intergenic 25.0%
! AGGGAAAAAACATGAAATTA+AGG + chr1_1:60356894-60356913 None:intergenic 25.0%
! TCACAAAAACATCATAAAGT+TGG + chr1_1:60356934-60356953 None:intergenic 25.0%
! ATGCAAATGGATAATAACAA+AGG - chr1_1:60357262-60357281 Msa0033110:CDS 25.0%
! TGCAAATGGATAATAACAAA+GGG - chr1_1:60357263-60357282 Msa0033110:CDS 25.0%
!!! TGTTAATTTTGATTTGTCTG+AGG - chr1_1:60357402-60357421 Msa0033110:CDS 25.0%
! GCATAATAACAAAATGATGA+TGG - chr1_1:60357564-60357583 Msa0033110:CDS 25.0%
! AATTATGCAAAAGCCAAAAA+AGG - chr1_1:60357697-60357716 Msa0033110:CDS 25.0%
!!! ATCCATAATATCTCCTTTTT+TGG + chr1_1:60357713-60357732 None:intergenic 25.0%
! AATAGTAGCAAGAAGAAAAA+TGG - chr1_1:60357886-60357905 Msa0033110:CDS 25.0%
!!! GTTTTCTAGTTAAGTTTCTA+GGG - chr1_1:60357932-60357951 Msa0033110:CDS 25.0%
! ATTATTACCATGTCCATTAT+TGG + chr1_1:60358184-60358203 None:intergenic 25.0%
! AATGGACATGGTAATAATAA+TGG - chr1_1:60358186-60358205 Msa0033110:intron 25.0%
! CATGGTAATAATAATGGTAA+TGG - chr1_1:60358192-60358211 Msa0033110:intron 25.0%
!! TGGTAATAATAATGGTAATG+GGG - chr1_1:60358194-60358213 Msa0033110:intron 25.0%
!! TCCATTAAATTTTGTTGCAA+TGG - chr1_1:60358753-60358772 Msa0033110:five_prime_UTR 25.0%
! ACCATTGCAACAAAATTTAA+TGG + chr1_1:60358757-60358776 None:intergenic 25.0%
!! TTAAATTTTGTTGCAATGGT+AGG - chr1_1:60358757-60358776 Msa0033110:five_prime_UTR 25.0%
AGAAGTGATAAATTGATTGC+CGG + chr1_1:60356281-60356300 None:intergenic 30.0%
AGAAGAGAAGAAATAGTTGT+TGG + chr1_1:60356438-60356457 None:intergenic 30.0%
GTACAGATTCAACTTTAACT+AGG + chr1_1:60356592-60356611 None:intergenic 30.0%
AAGGTTAATATCCATTGTGA+AGG - chr1_1:60356665-60356684 Msa0033110:CDS 30.0%
AAACTGCTTCAGAAAATTGA+AGG - chr1_1:60356707-60356726 Msa0033110:CDS 30.0%
AAGAAAAGAAGAAAGAGACA+TGG + chr1_1:60356743-60356762 None:intergenic 30.0%
CATCATAAAGTTGGAAACTT+TGG + chr1_1:60356925-60356944 None:intergenic 30.0%
TGAATATAGATGCAGAACAA+GGG - chr1_1:60357089-60357108 Msa0033110:CDS 30.0%
TCAAAAAGCTGAAAAGTTCA+GGG - chr1_1:60357152-60357171 Msa0033110:CDS 30.0%
ATTTGCATGTTCTTAAACTG+AGG + chr1_1:60357250-60357269 None:intergenic 30.0%
TCAGTTTAAGAACATGCAAA+TGG - chr1_1:60357249-60357268 Msa0033110:CDS 30.0%
GCAAATGGATAATAACAAAG+GGG - chr1_1:60357264-60357283 Msa0033110:CDS 30.0%
CAAATGGATAATAACAAAGG+GGG - chr1_1:60357265-60357284 Msa0033110:CDS 30.0%
! TTCATATCTTTTCCTCCTTT+AGG + chr1_1:60357358-60357377 None:intergenic 30.0%
!! ACATGTTTCTGAGATTTGTT+GGG + chr1_1:60357385-60357404 None:intergenic 30.0%
!! AACATGTTTCTGAGATTTGT+TGG + chr1_1:60357386-60357405 None:intergenic 30.0%
!!! TAATTTTGATTTGTCTGAGG+AGG - chr1_1:60357405-60357424 Msa0033110:CDS 30.0%
AGCCAAAAAAGGAGATATTA+TGG - chr1_1:60357708-60357727 Msa0033110:CDS 30.0%
AAGGGTAAAAGTGGAAATTA+CGG - chr1_1:60357754-60357773 Msa0033110:CDS 30.0%
AATTACGGTGAGGTAAAAAA+TGG - chr1_1:60357769-60357788 Msa0033110:CDS 30.0%
ATGGAGGTAAGAAGAATAAA+GGG - chr1_1:60357821-60357840 Msa0033110:CDS 30.0%
AATAAAGGGGAAAAGCAAAA+GGG - chr1_1:60357835-60357854 Msa0033110:CDS 30.0%
AGCAAGAAGAAAAATGGTAA+AGG - chr1_1:60357892-60357911 Msa0033110:CDS 30.0%
!!! GGTTTTCTAGTTAAGTTTCT+AGG - chr1_1:60357931-60357950 Msa0033110:CDS 30.0%
CTTGGAAAAAAGAGCAAAAA+GGG - chr1_1:60357955-60357974 Msa0033110:CDS 30.0%
!!! TCCATTGTTTTTGTTCTTGT+CGG + chr1_1:60357992-60358011 None:intergenic 30.0%
AAAGGGAAAAAAGGTAAGAA+AGG - chr1_1:60358039-60358058 Msa0033110:CDS 30.0%
AGGTAAGAAAGGTGAAAAAT+TGG - chr1_1:60358050-60358069 Msa0033110:CDS 30.0%
!! GGTAATAATAATGGTAATGG+GGG - chr1_1:60358195-60358214 Msa0033110:intron 30.0%
TATCCACAACATATGATGTA+TGG - chr1_1:60358540-60358559 Msa0033110:CDS 30.0%
! ATATAGTTCATTGATGGATG+TGG + chr1_1:60358576-60358595 None:intergenic 30.0%
ACATCCATCAATGAACTATA+TGG - chr1_1:60358575-60358594 Msa0033110:intron 30.0%
CATCCATCAATGAACTATAT+GGG - chr1_1:60358576-60358595 Msa0033110:intron 30.0%
AGGAAAATGTGCAAGATTTA+AGG - chr1_1:60358777-60358796 Msa0033110:five_prime_UTR 30.0%
!!! TAAGTTTTGAGGAGTGAATT+AGG + chr1_1:60358927-60358946 None:intergenic 30.0%
!! ATGGGTTAAGATAAGTTTTG+AGG + chr1_1:60358938-60358957 None:intergenic 30.0%
TGTTTATTATCTTGCAGCAC+CGG - chr1_1:60356259-60356278 Msa0033110:three_prime_UTR 35.0%
TCTGTAGAATTGTCTTCTCA+AGG - chr1_1:60356646-60356665 Msa0033110:CDS 35.0%
TAAGGAGGGTTTAGAAACAT+GGG + chr1_1:60356876-60356895 None:intergenic 35.0%
TTAAGGAGGGTTTAGAAACA+TGG + chr1_1:60356877-60356896 None:intergenic 35.0%
GGAAACTTTGGATGAATGAA+GGG + chr1_1:60356913-60356932 None:intergenic 35.0%
TGGAAACTTTGGATGAATGA+AGG + chr1_1:60356914-60356933 None:intergenic 35.0%
GTGAATATAGATGCAGAACA+AGG - chr1_1:60357088-60357107 Msa0033110:CDS 35.0%
! CTGAACTTTTCAGCTTTTTG+AGG + chr1_1:60357153-60357172 None:intergenic 35.0%
CTCAAAAAGCTGAAAAGTTC+AGG - chr1_1:60357151-60357170 Msa0033110:CDS 35.0%
AACAAGCCTCAGAATCAAAA+GGG - chr1_1:60357295-60357314 Msa0033110:CDS 35.0%
!! TTTTGACCCTTTTGATTCTG+AGG + chr1_1:60357304-60357323 None:intergenic 35.0%
CAGAATCAAAAGGGTCAAAA+AGG - chr1_1:60357304-60357323 Msa0033110:CDS 35.0%
AATCAAAAGGGTCAAAAAGG+TGG - chr1_1:60357307-60357326 Msa0033110:CDS 35.0%
GCACAGTTTCAAAATCCTAA+AGG - chr1_1:60357340-60357359 Msa0033110:CDS 35.0%
CAGTTTCAAAATCCTAAAGG+AGG - chr1_1:60357343-60357362 Msa0033110:CDS 35.0%
!! CTATGACGATGATTTTGATG+AGG - chr1_1:60357459-60357478 Msa0033110:CDS 35.0%
! TTTTGATGAGGATGAAGAAG+AGG - chr1_1:60357471-60357490 Msa0033110:CDS 35.0%
! GTGATGGTATGATGATGAAT+GGG - chr1_1:60357626-60357645 Msa0033110:CDS 35.0%
TAAAAGTGGAAATTACGGTG+AGG - chr1_1:60357759-60357778 Msa0033110:CDS 35.0%
GGTGAGGTAAAAAATGGTAA+TGG - chr1_1:60357775-60357794 Msa0033110:CDS 35.0%
!! GAGGTAAAAAATGGTAATGG+AGG - chr1_1:60357778-60357797 Msa0033110:CDS 35.0%
!! GTAAAAAATGGTAATGGAGG+TGG - chr1_1:60357781-60357800 Msa0033110:CDS 35.0%
GATGGAGGTAAGAAGAATAA+AGG - chr1_1:60357820-60357839 Msa0033110:CDS 35.0%
TGGAGGTAAGAAGAATAAAG+GGG - chr1_1:60357822-60357841 Msa0033110:CDS 35.0%
GAATAAAGGGGAAAAGCAAA+AGG - chr1_1:60357834-60357853 Msa0033110:CDS 35.0%
AATGGTAAAGGTAAAAACGG+TGG - chr1_1:60357904-60357923 Msa0033110:CDS 35.0%
GCTTGGAAAAAAGAGCAAAA+AGG - chr1_1:60357954-60357973 Msa0033110:CDS 35.0%
GACAAGAACAAAAACAATGG+AGG - chr1_1:60357991-60358010 Msa0033110:CDS 35.0%
AAGAACAAAAACAATGGAGG+AGG - chr1_1:60357994-60358013 Msa0033110:CDS 35.0%
AATAGCAACAACAACAGCAA+AGG - chr1_1:60358021-60358040 Msa0033110:CDS 35.0%
ATAGCAACAACAACAGCAAA+GGG - chr1_1:60358022-60358041 Msa0033110:CDS 35.0%
AACAACAGCAAAGGGAAAAA+AGG - chr1_1:60358030-60358049 Msa0033110:CDS 35.0%
GTGGAAATGGAAATGGAAAT+GGG - chr1_1:60358133-60358152 Msa0033110:CDS 35.0%
AATGGAAATGGAAATGGGAA+AGG - chr1_1:60358138-60358157 Msa0033110:intron 35.0%
ATGGCAGCAATGAATAAGAT+GGG - chr1_1:60358258-60358277 Msa0033110:intron 35.0%
AATGAATAAGATGGGTCCAA+TGG - chr1_1:60358266-60358285 Msa0033110:intron 35.0%
ATGAATAAGATGGGTCCAAT+GGG - chr1_1:60358267-60358286 Msa0033110:intron 35.0%
ATGAATGGTGGCTATTATCA+AGG - chr1_1:60358363-60358382 Msa0033110:intron 35.0%
ACAACAACAACAGCAATACA+TGG - chr1_1:60358431-60358450 Msa0033110:intron 35.0%
TCACTGAAAACATGAGTGAT+TGG + chr1_1:60358636-60358655 None:intergenic 35.0%
CTGAATGTGCCTAAGTAGTA+CGG - chr1_1:60356313-60356332 Msa0033110:three_prime_UTR 40.0%
!! AGGGTATTGTTGGAATGCAT+TGG + chr1_1:60356375-60356394 None:intergenic 40.0%
!! TAGAGGCAAAAGGGTATTGT+TGG + chr1_1:60356385-60356404 None:intergenic 40.0%
! TGTTGTTGTTGTTGTGATGC+AGG - chr1_1:60357055-60357074 Msa0033110:CDS 40.0%
! GTTGTTGTTGTTGTGATGCA+GGG - chr1_1:60357056-60357075 Msa0033110:CDS 40.0%
! TTGTTGTTGTTGTGATGCAG+GGG - chr1_1:60357057-60357076 Msa0033110:CDS 40.0%
TATAGATGCAGAACAAGGGA+AGG - chr1_1:60357093-60357112 Msa0033110:CDS 40.0%
AGGGAAACATGCTGAACTAT+GGG - chr1_1:60357171-60357190 Msa0033110:CDS 40.0%
CAACAAGCCTCAGAATCAAA+AGG - chr1_1:60357294-60357313 Msa0033110:CDS 40.0%
GAGGAATTTGATGAGAGTGA+TGG - chr1_1:60357424-60357443 Msa0033110:CDS 40.0%
ATGATGGCTATGATGCAGAA+TGG - chr1_1:60357580-60357599 Msa0033110:CDS 40.0%
TTCATCATCATACCATCACC+AGG + chr1_1:60357625-60357644 None:intergenic 40.0%
! GGTGATGGTATGATGATGAA+TGG - chr1_1:60357625-60357644 Msa0033110:CDS 40.0%
! AACATCCCAGGTAATGGTAA+AGG - chr1_1:60357661-60357680 Msa0033110:CDS 40.0%
ACCTATGCAAATGCAGATGA+AGG - chr1_1:60357735-60357754 Msa0033110:CDS 40.0%
CCTATGCAAATGCAGATGAA+GGG - chr1_1:60357736-60357755 Msa0033110:CDS 40.0%
ATGCAGATGAAGGGTAAAAG+TGG - chr1_1:60357745-60357764 Msa0033110:CDS 40.0%
! GTAATGGAGGTGGTAAGAAA+GGG - chr1_1:60357791-60357810 Msa0033110:CDS 40.0%
TAATGGAGGTGGTAAGAAAG+GGG - chr1_1:60357792-60357811 Msa0033110:CDS 40.0%
!! CTAGTTAAGTTTCTAGGGCT+TGG - chr1_1:60357937-60357956 Msa0033110:CDS 40.0%
GGAAAAAAGAGCAAAAAGGG+AGG - chr1_1:60357958-60357977 Msa0033110:CDS 40.0%
AAAAAGAGCAAAAAGGGAGG+AGG - chr1_1:60357961-60357980 Msa0033110:CDS 40.0%
GCCGACAAGAACAAAAACAA+TGG - chr1_1:60357988-60358007 Msa0033110:CDS 40.0%
AACAAAAACAATGGAGGAGG+TGG - chr1_1:60357997-60358016 Msa0033110:CDS 40.0%
GAGGAGTGATATCAAAGTCT+TGG + chr1_1:60358095-60358114 None:intergenic 40.0%
GACTTTGATATCACTCCTCA+TGG - chr1_1:60358096-60358115 Msa0033110:CDS 40.0%
ATCACTCCTCATGGTAAAAG+TGG - chr1_1:60358105-60358124 Msa0033110:CDS 40.0%
TCCTCATGGTAAAAGTGGTA+AGG - chr1_1:60358110-60358129 Msa0033110:CDS 40.0%
CCTCATGGTAAAAGTGGTAA+GGG - chr1_1:60358111-60358130 Msa0033110:CDS 40.0%
AAAAGTGGTAAGGGTGGAAA+TGG - chr1_1:60358120-60358139 Msa0033110:CDS 40.0%
GGTGGAAATGGAAATGGAAA+TGG - chr1_1:60358132-60358151 Msa0033110:CDS 40.0%
GATGGCAGCAATGAATAAGA+TGG - chr1_1:60358257-60358276 Msa0033110:intron 40.0%
TGCTGTTGCTGATAAGGATT+TGG + chr1_1:60358405-60358424 None:intergenic 40.0%
CCTCCATACATCATATGTTG+TGG + chr1_1:60358546-60358565 None:intergenic 40.0%
CCACAACATATGATGTATGG+AGG - chr1_1:60358543-60358562 Msa0033110:CDS 40.0%
CAACATATGATGTATGGAGG+AGG - chr1_1:60358546-60358565 Msa0033110:CDS 40.0%
ATATGATGTATGGAGGAGGA+AGG - chr1_1:60358550-60358569 Msa0033110:CDS 40.0%
GGTCCCATATAGTTCATTGA+TGG + chr1_1:60358582-60358601 None:intergenic 40.0%
!! AGTAGTGGCTAGTTTGTTTC+AGG - chr1_1:60358701-60358720 Msa0033110:intron 40.0%
TCATAAGGTTGTCGTTACAC+AGG + chr1_1:60358850-60358869 None:intergenic 40.0%
TGTGATACTCTGTCATTGAC+TGG + chr1_1:60358892-60358911 None:intergenic 40.0%
TCTGCTCACAACCTTCACAA+TGG + chr1_1:60356679-60356698 None:intergenic 45.0%
TTGTGAAGGTTGTGAGCAGA+AGG - chr1_1:60356679-60356698 Msa0033110:CDS 45.0%
!! AGCTTTTTGAGGAGCTTTGC+TGG + chr1_1:60357142-60357161 None:intergenic 45.0%
CAGGGAAACATGCTGAACTA+TGG - chr1_1:60357170-60357189 Msa0033110:CDS 45.0%
GGGAAACATGCTGAACTATG+GGG - chr1_1:60357172-60357191 Msa0033110:CDS 45.0%
AAACATGCTGAACTATGGGG+TGG - chr1_1:60357175-60357194 Msa0033110:CDS 45.0%
GAGGATGAAGAAGAGGAGTT+TGG - chr1_1:60357478-60357497 Msa0033110:CDS 45.0%
GAAGAAGAGGAGTTTGGTCA+CGG - chr1_1:60357484-60357503 Msa0033110:CDS 45.0%
CTATGATGCAGAATGGTCGT+GGG - chr1_1:60357587-60357606 Msa0033110:CDS 45.0%
ACCATTACCTGGGATGTTCA+TGG + chr1_1:60357659-60357678 None:intergenic 45.0%
! ATCCCAGGTAATGGTAAAGG+AGG - chr1_1:60357664-60357683 Msa0033110:CDS 45.0%
CTCCTCCTTTACCATTACCT+GGG + chr1_1:60357669-60357688 None:intergenic 45.0%
CCCTTCATCTGCATTTGCAT+AGG + chr1_1:60357739-60357758 None:intergenic 45.0%
!! GGTAATGGAGGTGGTAAGAA+AGG - chr1_1:60357790-60357809 Msa0033110:CDS 45.0%
AATGGAGGTGGTAAGAAAGG+GGG - chr1_1:60357793-60357812 Msa0033110:CDS 45.0%
AAAGGGGAAAAGCAAAAGGG+TGG - chr1_1:60357838-60357857 Msa0033110:CDS 45.0%
GGTAAAGGTAAAAACGGTGG+TGG - chr1_1:60357907-60357926 Msa0033110:CDS 45.0%
! AAAGGTAAAAACGGTGGTGG+TGG - chr1_1:60357910-60357929 Msa0033110:CDS 45.0%
!! CCCTTACCACTTTTACCATG+AGG + chr1_1:60358114-60358133 None:intergenic 45.0%
CATGGTAAAAGTGGTAAGGG+TGG - chr1_1:60358114-60358133 Msa0033110:CDS 45.0%
GGTAAGGGTGGAAATGGAAA+TGG - chr1_1:60358126-60358145 Msa0033110:CDS 45.0%
TCCATTATTGGCATTGCCCT+TGG + chr1_1:60358172-60358191 None:intergenic 45.0%
!! GGCAATGCCAATAATGGACA+TGG - chr1_1:60358174-60358193 Msa0033110:intron 45.0%
!! TAATGGTAATGGGGGCCATA+TGG - chr1_1:60358203-60358222 Msa0033110:intron 45.0%
!! AATGGTAATGGGGGCCATAT+GGG - chr1_1:60358204-60358223 Msa0033110:intron 45.0%
TCTGATTCATTGCACCCATC+TGG + chr1_1:60358239-60358258 None:intergenic 45.0%
GATGGGTGCAATGAATCAGA+TGG - chr1_1:60358239-60358258 Msa0033110:intron 45.0%
ATTGAACCCATCTGACCCAT+TGG + chr1_1:60358285-60358304 None:intergenic 45.0%
! AATGGGTCAGATGGGTTCAA+TGG - chr1_1:60358284-60358303 Msa0033110:intron 45.0%
TGGGTTCAATGGACCAAATG+AGG - chr1_1:60358295-60358314 Msa0033110:intron 45.0%
! TGCTGTTGCTGTTGCTGATA+AGG + chr1_1:60358411-60358430 None:intergenic 45.0%
CAGCAACAACAAATGCAGCA+AGG - chr1_1:60358501-60358520 Msa0033110:intron 45.0%
GAGTGATTGGATCTGCCATA+GGG + chr1_1:60358623-60358642 None:intergenic 45.0%
TGAGTGATTGGATCTGCCAT+AGG + chr1_1:60358624-60358643 None:intergenic 45.0%
GTAACGACAACCTTATGAGC+AGG - chr1_1:60358852-60358871 Msa0033110:five_prime_UTR 45.0%
ACAACCTTATGAGCAGGACA+TGG - chr1_1:60358858-60358877 Msa0033110:five_prime_UTR 45.0%
! ACAGAGTATCACATGTCCTG+TGG - chr1_1:60358899-60358918 Msa0033110:five_prime_UTR 45.0%
! TGCAGAACAAGGGAAGGTGT+TGG - chr1_1:60357099-60357118 Msa0033110:CDS 50.0%
TTTGGTCACGGACATGGTCA+TGG - chr1_1:60357496-60357515 Msa0033110:CDS 50.0%
ATGGTCATGGCCATGGTCAA+GGG - chr1_1:60357509-60357528 Msa0033110:CDS 50.0%
GCTATGATGCAGAATGGTCG+TGG - chr1_1:60357586-60357605 Msa0033110:CDS 50.0%
GCCATGAACATCCCAGGTAA+TGG - chr1_1:60357655-60357674 Msa0033110:CDS 50.0%
CCTCCTCCTTTACCATTACC+TGG + chr1_1:60357670-60357689 None:intergenic 50.0%
! CCAGGTAATGGTAAAGGAGG+AGG - chr1_1:60357667-60357686 Msa0033110:CDS 50.0%
! GGTAATGGTAAAGGAGGAGG+TGG - chr1_1:60357670-60357689 Msa0033110:CDS 50.0%
AATGGTAAAGGAGGAGGTGG+TGG - chr1_1:60357673-60357692 Msa0033110:CDS 50.0%
GGTAAGAAAGGGGGTGATGA+TGG - chr1_1:60357802-60357821 Msa0033110:CDS 50.0%
!! AAGAAAGGGGGTGATGATGG+AGG - chr1_1:60357805-60357824 Msa0033110:CDS 50.0%
GGGAAAAGCAAAAGGGTGGT+GGG - chr1_1:60357842-60357861 Msa0033110:CDS 50.0%
GGAAAAGCAAAAGGGTGGTG+GGG - chr1_1:60357843-60357862 Msa0033110:CDS 50.0%
! GAAAAGCAAAAGGGTGGTGG+GGG - chr1_1:60357844-60357863 Msa0033110:CDS 50.0%
TTATTGGCATTGCCCTTGGC+AGG + chr1_1:60358168-60358187 None:intergenic 50.0%
GCCAAGGGCAATGCCAATAA+TGG - chr1_1:60358168-60358187 Msa0033110:intron 50.0%
ATGGGTCCAATGGGTCAGAT+GGG - chr1_1:60358276-60358295 Msa0033110:intron 50.0%
! ATAGGGTGTGATGGCATTGG+TGG + chr1_1:60358606-60358625 None:intergenic 50.0%
ACCAATGCCATCACACCCTA+TGG - chr1_1:60358605-60358624 Msa0033110:intron 50.0%
! ACTCTGTCATTGACTGGCAG+TGG + chr1_1:60358886-60358905 None:intergenic 50.0%
AGGAGTGAATTAGGCACCAC+AGG + chr1_1:60358918-60358937 None:intergenic 50.0%
!! CAAGGGAAGGTGTTGGTGAC+AGG - chr1_1:60357106-60357125 Msa0033110:CDS 55.0%
GAGGAGTTTGGTCACGGACA+TGG - chr1_1:60357490-60357509 Msa0033110:CDS 55.0%
CATGGTCATGGCCATGGTCA+AGG - chr1_1:60357508-60357527 Msa0033110:CDS 55.0%
! GGCCTCCAGGCAATGGATTT+GGG - chr1_1:60357530-60357549 Msa0033110:CDS 55.0%
TGCCCAAATCCATTGCCTGG+AGG + chr1_1:60357535-60357554 None:intergenic 55.0%
TGCTGCCCAAATCCATTGCC+TGG + chr1_1:60357538-60357557 None:intergenic 55.0%
GGGGAAAAGCAAAAGGGTGG+TGG - chr1_1:60357841-60357860 Msa0033110:CDS 55.0%
!! AAAAGGGTGGTGGGGGAGAT+TGG - chr1_1:60357851-60357870 Msa0033110:CDS 55.0%
!! AAAGGGTGGTGGGGGAGATT+GGG - chr1_1:60357852-60357871 Msa0033110:CDS 55.0%
TCTGGCCCATTGGACCCATA+TGG + chr1_1:60358221-60358240 None:intergenic 55.0%
TATGGGTCCAATGGGCCAGA+TGG - chr1_1:60358221-60358240 Msa0033110:intron 55.0%
ATGGGTCCAATGGGCCAGAT+GGG - chr1_1:60358222-60358241 Msa0033110:intron 55.0%
ATTGCACCCATCTGGCCCAT+TGG + chr1_1:60358231-60358250 None:intergenic 55.0%
GATGGGTCCAATGGGTCAGA+TGG - chr1_1:60358275-60358294 Msa0033110:intron 55.0%
! GGACCAAATGAGGAGCATGC+CGG - chr1_1:60358305-60358324 Msa0033110:intron 55.0%
GCCATAGGGTGTGATGGCAT+TGG + chr1_1:60358609-60358628 None:intergenic 55.0%
GGATCTGCCATAGGGTGTGA+TGG + chr1_1:60358615-60358634 None:intergenic 55.0%
GGCACCATGTCCTGCTCATA+AGG + chr1_1:60358865-60358884 None:intergenic 55.0%
CACGGACATGGTCATGGCCA+TGG - chr1_1:60357502-60357521 Msa0033110:CDS 60.0%
! GGGCCTCCAGGCAATGGATT+TGG - chr1_1:60357529-60357548 Msa0033110:CDS 60.0%
AATGGTCGTGGGCCACAGCT+AGG - chr1_1:60357598-60357617 Msa0033110:CDS 60.0%
ATGGTCGTGGGCCACAGCTA+GGG - chr1_1:60357599-60357618 Msa0033110:CDS 60.0%
CCTGGGATGTTCATGGCAGC+AGG + chr1_1:60357652-60357671 None:intergenic 60.0%
CCTGCTGCCATGAACATCCC+AGG - chr1_1:60357649-60357668 Msa0033110:CDS 60.0%
!! AAGGGTGGTGGGGGAGATTG+GGG - chr1_1:60357853-60357872 Msa0033110:CDS 60.0%
!! TGGGAAAGGTGCTCCTGCCA+AGG - chr1_1:60358152-60358171 Msa0033110:intron 60.0%
!! GGGAAAGGTGCTCCTGCCAA+GGG - chr1_1:60358153-60358172 Msa0033110:intron 60.0%
TGGGGGCCATATGGGTCCAA+TGG - chr1_1:60358212-60358231 Msa0033110:intron 60.0%
GGGGGCCATATGGGTCCAAT+GGG - chr1_1:60358213-60358232 Msa0033110:intron 60.0%
CTGCCGGCATGCTCCTCATT+TGG + chr1_1:60358311-60358330 None:intergenic 60.0%
!! GGGTGTGATGGCATTGGTGG+CGG + chr1_1:60358603-60358622 None:intergenic 60.0%
TGCCTGGAGGCCCTTGACCA+TGG + chr1_1:60357522-60357541 None:intergenic 65.0%
GGTCAAGGGCCTCCAGGCAA+TGG - chr1_1:60357523-60357542 Msa0033110:CDS 65.0%
CCATCACCAGGCCCTAGCTG+TGG + chr1_1:60357613-60357632 None:intergenic 65.0%
CCACAGCTAGGGCCTGGTGA+TGG - chr1_1:60357610-60357629 Msa0033110:CDS 65.0%
! AGGAGCATGCCGGCAGTGCA+AGG - chr1_1:60358315-60358334 Msa0033110:intron 65.0%
GGAGCATGCCGGCAGTGCAA+GGG - chr1_1:60358316-60358335 Msa0033110:intron 65.0%
GCCGGCAGTGCAAGGGTTAC+CGG - chr1_1:60358323-60358342 Msa0033110:intron 65.0%
GCCGGTAACCCTTGCACTGC+CGG + chr1_1:60358327-60358346 None:intergenic 65.0%
GCAGTGCAAGGGTTACCGGC+CGG - chr1_1:60358327-60358346 Msa0033110:intron 65.0%
CAGTGCAAGGGTTACCGGCC+GGG - chr1_1:60358328-60358347 Msa0033110:intron 65.0%
AGTGCAAGGGTTACCGGCCG+GGG - chr1_1:60358329-60358348 Msa0033110:intron 65.0%
ATTCATCGCCGCAGCTGCCC+CGG + chr1_1:60358349-60358368 None:intergenic 65.0%
GCAGCTGCGGCGATGAATGG+TGG - chr1_1:60358351-60358370 Msa0033110:intron 65.0%
GGCCATGGTCAAGGGCCTCC+AGG - chr1_1:60357517-60357536 Msa0033110:CDS 70.0%
GGGGCAGCTGCGGCGATGAA+TGG - chr1_1:60358348-60358367 Msa0033110:intron 70.0%
CGTGGGCCACAGCTAGGGCC+TGG - chr1_1:60357604-60357623 Msa0033110:CDS 75.0%
GTTACCGGCCGGGGCAGCTG+CGG - chr1_1:60358338-60358357 Msa0033110:intron 75.0%
! ATCGCCGCAGCTGCCCCGGC+CGG + chr1_1:60358345-60358364 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 60356233 60359000 60356233 ID=Msa0033110;Name=Msa0033110
chr1_1 mRNA 60356233 60359000 60356233 ID=Msa0033110-mRNA-1;Parent=Msa0033110;Name=Msa0033110-mRNA-1;_AED=0.01;_eAED=0.01;_QI=262|1|1|1|1|1|3|314|571
chr1_1 exon 60356233 60358156 60356233 ID=Msa0033110-mRNA-1:exon:18896;Parent=Msa0033110-mRNA-1
chr1_1 exon 60358505 60358580 60358505 ID=Msa0033110-mRNA-1:exon:18895;Parent=Msa0033110-mRNA-1
chr1_1 exon 60358709 60359000 60358709 ID=Msa0033110-mRNA-1:exon:18894;Parent=Msa0033110-mRNA-1
chr1_1 five_prime_UTR 60358739 60359000 60358739 ID=Msa0033110-mRNA-1:five_prime_utr;Parent=Msa0033110-mRNA-1
chr1_1 CDS 60358709 60358738 60358709 ID=Msa0033110-mRNA-1:cds;Parent=Msa0033110-mRNA-1
chr1_1 CDS 60358505 60358580 60358505 ID=Msa0033110-mRNA-1:cds;Parent=Msa0033110-mRNA-1
chr1_1 CDS 60356547 60358156 60356547 ID=Msa0033110-mRNA-1:cds;Parent=Msa0033110-mRNA-1
chr1_1 three_prime_UTR 60356233 60356546 60356233 ID=Msa0033110-mRNA-1:three_prime_utr;Parent=Msa0033110-mRNA-1
Gene Sequence

>Msa0033110

ATGAGTAAACAAGATATGATGAAAATTCAGAATTGTCTTCTCAAGGTTAATATCCATTGTGAAGGTTGTGAGCAGAAGGTTAAGAAACTGCTTCAGAAAATTGAAGGGGTGTATTCTGTGAATATAGATGCAGAACAAGGGAAGGTGTTGGTGACAGGTGATGTAGATCCAGCAAAGCTCCTCAAAAAGCTGAAAAGTTCAGGGAAACATGCTGAACTATGGGGTGGACAGAAAGCTATGATGATTAATCAAAATCAAAACTTTCAACAACAACAACCTCAGTTTAAGAACATGCAAATGGATAATAACAAAGGGGGTAAGAACAACAAGCCTCAGAATCAAAAGGGTCAAAAAGGTGGTGTTCAAGTAGCACAGTTTCAAAATCCTAAAGGAGGAAAAGATATGAAAGTGCCCAACAAATCTCAGAAACATGTTAATTTTGATTTGTCTGAGGAGGAATTTGATGAGAGTGATGGCGATTTTGATGACTATGACGATGATTTTGATGAGGATGAAGAAGAGGAGTTTGGTCACGGACATGGTCATGGCCATGGTCAAGGGCCTCCAGGCAATGGATTTGGGCAGCATCCTATGCATAATAACAAAATGATGATGGCTATGATGCAGAATGGTCGTGGGCCACAGCTAGGGCCTGGTGATGGTATGATGATGAATGGGCCTGCTGCCATGAACATCCCAGGTAATGGTAAAGGAGGAGGTGGTGGTAATTATGCAAAAGCCAAAAAAGGAGATATTATGGATCTACCTATGCAAATGCAGATGAAGGGTAAAAGTGGAAATTACGGTGAGGTAAAAAATGGTAATGGAGGTGGTAAGAAAGGGGGTGATGATGGAGGTAAGAAGAATAAAGGGGAAAAGCAAAAGGGTGGTGGGGGAGATTGGGGAGATGAAAAAAATAGTAGCAAGAAGAAAAATGGTAAAGGTAAAAACGGTGGTGGTGGTTTTCTAGTTAAGTTTCTAGGGCTTGGAAAAAAGAGCAAAAAGGGAGGAGGTGCAGCCGACAAGAACAAAAACAATGGAGGAGGTGGAAATAGCAACAACAACAGCAAAGGGAAAAAAGGTAAGAAAGGTGAAAAATTGGATAAAGTTGAATTTGATTTCCAAGACTTTGATATCACTCCTCATGGTAAAAGTGGTAAGGGTGGAAATGGAAATGGAAATGGGAAAGGTGCTCCTGCCAAGGGCAATGCCAATAATGGACATGGTAATAATAATGGTAATGGGGGCCATATGGGTCCAATGGGCCAGATGGGTGCAATGAATCAGATGGCAGCAATGAATAAGATGGGTCCAATGGGTCAGATGGGTTCAATGGACCAAATGAGGAGCATGCCGGCAGTGCAAGGGTTACCGGCCGGGGCAGCTGCGGCGATGAATGGTGGCTATTATCAAGGAATGCAGCAGATGCAACCAAATCCTTATCAGCAACAGCAACAGCAACAACAACAACAGCAATACATGGCTATGATGATGCAGCAGCAACAGCAGCAACAAATGCAGCAGCAACTGCAGCAACAACAAATGCAGCAAGGAAATATGAACAGCATGTATCCACAACATATGATGTATGGAGGAGGAAGGCCACATCCATCAATGAACTATATGGGACCGCCACCAATGCCATCACACCCTATGGCAGATCCAATCACTCATGTTTTCAGTGATGAGAACACTGAGAGCTGTAGCATCATGTAA
Protein sequence

>Msa0033110

MSKQDMMKIQNCLLKVNIHCEGCEQKVKKLLQKIEGVYSVNIDAEQGKVLVTGDVDPAKLLKKLKSSGKHAELWGGQKAMMINQNQNFQQQQPQFKNMQMDNNKGGKNNKPQNQKGQKGGVQVAQFQNPKGGKDMKVPNKSQKHVNFDLSEEEFDESDGDFDDYDDDFDEDEEEEFGHGHGHGHGQGPPGNGFGQHPMHNNKMMMAMMQNGRGPQLGPGDGMMMNGPAAMNIPGNGKGGGGGNYAKAKKGDIMDLPMQMQMKGKSGNYGEVKNGNGGGKKGGDDGGKKNKGEKQKGGGGDWGDEKNSSKKKNGKGKNGGGGFLVKFLGLGKKSKKGGGAADKNKNNGGGGNSNNNSKGKKGKKGEKLDKVEFDFQDFDITPHGKSGKGGNGNGNGKGAPAKGNANNGHGNNNGNGGHMGPMGQMGAMNQMAAMNKMGPMGQMGSMDQMRSMPAVQGLPAGAAAAMNGGYYQGMQQMQPNPYQQQQQQQQQQQYMAMMMQQQQQQQMQQQLQQQQMQQGNMNSMYPQHMMYGGGRPHPSMNYMGPPPMPSHPMADPITHVFSDENTESCSIM*