Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0386830 | XP_003603924.2 | 100.000 | 200 | 0 | 0 | 3 | 202 | 690 | 889 | 5.96e-133 | 404 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0386830 | sp|C0LGK4|Y2165_ARATH | 64.516 | 155 | 52 | 1 | 3 | 154 | 699 | 853 | 2.07e-64 | 216 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0386830 | G7J726 | 100.000 | 200 | 0 | 0 | 3 | 202 | 690 | 889 | 2.84e-133 | 404 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0386810 | Msa0386830 | 0.877490 | 6.025669e-69 | -8.615850e-47 |
| Msa0386830 | Msa0386880 | 0.807492 | 4.922127e-50 | -8.615850e-47 |
| Msa0386830 | Msa0813160 | 0.827951 | 1.177780e-54 | -8.615850e-47 |
| Msa0386830 | Msa1106590 | 0.808175 | 3.524596e-50 | -8.615850e-47 |
| Msa0386830 | Msa1365820 | 0.822218 | 2.664500e-53 | -8.615850e-47 |
| Msa0386830 | Msa1368390 | 0.827346 | 1.645688e-54 | -8.615850e-47 |
| Msa0386830 | Msa1418080 | 0.812235 | 4.695164e-51 | -8.615850e-47 |
| Msa0386830 | Msa1457770 | 0.814993 | 1.160929e-51 | -8.615850e-47 |
| Msa0281470 | Msa0386830 | 0.809280 | 2.045836e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0386830 | MtrunA17_Chr3g0144581 | 100.000 | 200 | 0 | 0 | 3 | 202 | 690 | 889 | 5.48e-137 | 404 |
| Msa0386830 | MtrunA17_Chr1g0155161 | 58.333 | 204 | 77 | 3 | 2 | 198 | 629 | 831 | 4.71e-72 | 233 |
| Msa0386830 | MtrunA17_Chr1g0209211 | 38.542 | 96 | 52 | 3 | 18 | 111 | 612 | 702 | 5.68e-12 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0386830 | AT2G16250.1 | 64.516 | 155 | 52 | 1 | 3 | 154 | 699 | 853 | 2.10e-65 | 216 |
| Msa0386830 | AT4G39270.1 | 58.385 | 161 | 60 | 3 | 3 | 160 | 676 | 832 | 1.24e-52 | 181 |
| Msa0386830 | AT1G25320.1 | 38.542 | 96 | 51 | 4 | 18 | 110 | 606 | 696 | 4.11e-12 | 64.7 |
| Msa0386830 | AT5G45840.1 | 33.654 | 104 | 60 | 3 | 19 | 122 | 593 | 687 | 1.37e-11 | 63.2 |
| Msa0386830 | AT5G45840.2 | 33.654 | 104 | 60 | 3 | 19 | 122 | 555 | 649 | 1.65e-11 | 63.2 |
| Msa0386830 | AT1G26970.1 | 36.667 | 120 | 73 | 2 | 19 | 138 | 274 | 390 | 2.61e-11 | 62.4 |
| Msa0386830 | AT1G26970.2 | 36.667 | 120 | 73 | 2 | 19 | 138 | 159 | 275 | 3.29e-11 | 61.6 |
| Msa0386830 | AT1G73080.1 | 38.053 | 113 | 65 | 2 | 19 | 126 | 1011 | 1123 | 5.78e-11 | 61.6 |
Find 57 sgRNAs with CRISPR-Local
Find 346 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTGGTCGTCTTGAAGGTTT+TGG | 0.247158 | 3_1:-90667961 | None:intergenic |
| CTTCCAGTGAGGGTGTATTA+AGG | 0.274272 | 3_1:+90667794 | Msa0386830:CDS |
| GCCTACGACGTTTATTGCTT+TGG | 0.282320 | 3_1:+90667727 | Msa0386830:CDS |
| GCCGTAATCCCTGCAGCTTC+TGG | 0.317315 | 3_1:+90668132 | Msa0386830:CDS |
| CCTACGACGTTTATTGCTTT+GGG | 0.354623 | 3_1:+90667728 | Msa0386830:CDS |
| TCCTCTGAACAAGGCGCATC+TGG | 0.361106 | 3_1:+90666784 | Msa0386830:CDS |
| GCTTCTGGTACGAAATTAGA+AGG | 0.373028 | 3_1:+90668147 | Msa0386830:CDS |
| GAGATATGTTCTCAAGGCTT+TGG | 0.373932 | 3_1:+90667987 | Msa0386830:CDS |
| TCGTGGAATGCTACTTTGTT+TGG | 0.377615 | 3_1:+90668081 | Msa0386830:CDS |
| CTCATCGGTGGTCGTCTTGA+AGG | 0.381640 | 3_1:-90667967 | None:intergenic |
| TGGGAAAGTGTTACTTGAAC+TGG | 0.390622 | 3_1:+90667747 | Msa0386830:CDS |
| ATGCTACTTTGTTTGGTAGT+TGG | 0.402370 | 3_1:+90668088 | Msa0386830:CDS |
| CCCATCTCTTGTTGTGGATG+AGG | 0.405782 | 3_1:+90667885 | Msa0386830:CDS |
| ACCAGAAGCTGCAGGGATTA+CGG | 0.419537 | 3_1:-90668133 | None:intergenic |
| ATATGCCCTGAGCCATCATT+TGG | 0.419817 | 3_1:+90668234 | Msa0386830:CDS |
| TGTGGATGAGGATTTCTTAG+AGG | 0.425425 | 3_1:+90667897 | Msa0386830:CDS |
| AGTAGCATTCCACGAGCCTC+TGG | 0.462876 | 3_1:-90668073 | None:intergenic |
| TTCCAGTGAGGGTGTATTAA+GGG | 0.463137 | 3_1:+90667795 | Msa0386830:CDS |
| TGAACTGGTGACTGGTAAGC+TGG | 0.476631 | 3_1:+90667762 | Msa0386830:CDS |
| GGTAAGCCAAATGATGGCTC+AGG | 0.478392 | 3_1:-90668240 | None:intergenic |
| GGGTCCACCCTCTCTACATC+AGG | 0.500070 | 3_1:-90668261 | None:intergenic |
| TCCTCATCCACAACAAGAGA+TGG | 0.501136 | 3_1:-90667886 | None:intergenic |
| AATTTCGTACCAGAAGCTGC+AGG | 0.508854 | 3_1:-90668141 | None:intergenic |
| TTCCCTTAATACACCCTCAC+TGG | 0.509664 | 3_1:-90667797 | None:intergenic |
| GGAATTAGTGCTTCCAGTGA+GGG | 0.528906 | 3_1:+90667784 | Msa0386830:CDS |
| GGGCAATAGCCATTGTTGCC+AGG | 0.530650 | 3_1:+90667926 | Msa0386830:CDS |
| ATTCCACGAGCCTCTGGAAG+AGG | 0.531453 | 3_1:-90668067 | None:intergenic |
| GTGAGGGTGTATTAAGGGAA+TGG | 0.556967 | 3_1:+90667800 | Msa0386830:CDS |
| AGGATTTCTTAGAGGAAGTG+TGG | 0.559826 | 3_1:+90667905 | Msa0386830:CDS |
| CGTTGACCCATCTCTTGTTG+TGG | 0.569120 | 3_1:+90667879 | Msa0386830:CDS |
| TAGGCATGACCTGGCAACAA+TGG | 0.571983 | 3_1:-90667935 | None:intergenic |
| GTGTTACTTGAACTGGTGAC+TGG | 0.574167 | 3_1:+90667754 | Msa0386830:CDS |
| ACCAGATGCGCCTTGTTCAG+AGG | 0.577441 | 3_1:-90666785 | None:intergenic |
| CTTCTGGTACGAAATTAGAA+GGG | 0.579596 | 3_1:+90668148 | Msa0386830:CDS |
| ACATCAGGTAAGCCAAATGA+TGG | 0.581276 | 3_1:-90668246 | None:intergenic |
| TAGAGAGGGTGGACCCCTGA+AGG | 0.584776 | 3_1:+90668268 | Msa0386830:CDS |
| TGGCTTACCTGATGTAGAGA+GGG | 0.587526 | 3_1:+90668254 | Msa0386830:CDS |
| ATGTGTAGGTCCTCTGAACA+AGG | 0.600454 | 3_1:+90666775 | Msa0386830:intron |
| GGATTTCTTAGAGGAAGTGT+GGG | 0.601864 | 3_1:+90667906 | Msa0386830:CDS |
| TTGGCTTACCTGATGTAGAG+AGG | 0.604771 | 3_1:+90668253 | Msa0386830:CDS |
| CCTCATCCACAACAAGAGAT+GGG | 0.606611 | 3_1:-90667885 | None:intergenic |
| ATTTCGTACCAGAAGCTGCA+GGG | 0.611047 | 3_1:-90668140 | None:intergenic |
| CAACCTCTTCCAGAGGCTCG+TGG | 0.611061 | 3_1:+90668064 | Msa0386830:CDS |
| ACCGATGAGATATGTTCTCA+AGG | 0.614512 | 3_1:+90667981 | Msa0386830:CDS |
| GGGAATTAGTGCTTCCAGTG+AGG | 0.614703 | 3_1:+90667783 | Msa0386830:CDS |
| TTGTCATACATGTTAATGCA+AGG | 0.626490 | 3_1:-90667838 | None:intergenic |
| GCCTTGAGAACATATCTCAT+CGG | 0.628377 | 3_1:-90667982 | None:intergenic |
| TTCTGGTACGAAATTAGAAG+GGG | 0.633042 | 3_1:+90668149 | Msa0386830:CDS |
| CTTACCTGATGTAGAGAGGG+TGG | 0.634160 | 3_1:+90668257 | Msa0386830:CDS |
| GTAAGCCAAATGATGGCTCA+GGG | 0.643091 | 3_1:-90668239 | None:intergenic |
| GAACTGGTGACTGGTAAGCT+GGG | 0.643261 | 3_1:+90667763 | Msa0386830:CDS |
| CTGAAAGCAACCTCTTCCAG+AGG | 0.650336 | 3_1:+90668057 | Msa0386830:CDS |
| AAGAAAGTTCGAGTTCTGCA+CGG | 0.654856 | 3_1:+90668034 | Msa0386830:CDS |
| CCCAAAGCAATAAACGTCGT+AGG | 0.665326 | 3_1:-90667728 | None:intergenic |
| TTGAGAACATATCTCATCGG+TGG | 0.672917 | 3_1:-90667979 | None:intergenic |
| TTGCATTAACATGTATGACA+AGG | 0.709287 | 3_1:+90667840 | Msa0386830:CDS |
| CAACTAGTAGTTCATCGTCG+CGG | 0.735969 | 3_1:+90668193 | Msa0386830:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATTGTTCTTATAAAAAA+GGG | - | chr3_1:90663326-90663345 | None:intergenic | 10.0% |
| !! | TTTAATTGTTCTTATAAAAA+AGG | - | chr3_1:90663327-90663346 | None:intergenic | 10.0% |
| !! | ATATATACTAATATTTATCT+TGG | - | chr3_1:90663451-90663470 | None:intergenic | 10.0% |
| !!! | TTATTAATTTATGATTTTCT+TGG | + | chr3_1:90664863-90664882 | Msa0386830:intron | 10.0% |
| !!! | TATTAATTTATGATTTTCTT+GGG | + | chr3_1:90664864-90664883 | Msa0386830:intron | 10.0% |
| !!! | TAATAAGATAATAATTTTTC+GGG | - | chr3_1:90664911-90664930 | None:intergenic | 10.0% |
| !!! | CTCTATTATATTTTTTTAAG+TGG | + | chr3_1:90663131-90663150 | Msa0386830:intron | 15.0% |
| !! | TGAATGCATTTATATAAAAA+GGG | - | chr3_1:90663411-90663430 | None:intergenic | 15.0% |
| !! | TTGAATGCATTTATATAAAA+AGG | - | chr3_1:90663412-90663431 | None:intergenic | 15.0% |
| !!! | GTTTAATTTTGATTTAATCA+GGG | - | chr3_1:90664079-90664098 | None:intergenic | 15.0% |
| !!! | TGTTTAATTTTGATTTAATC+AGG | - | chr3_1:90664080-90664099 | None:intergenic | 15.0% |
| !!! | AGTTTTTCAATTTTTTACAT+TGG | + | chr3_1:90664939-90664958 | Msa0386830:intron | 15.0% |
| !!! | TTGTTTCTTATAAAAAAGAT+CGG | - | chr3_1:90665120-90665139 | None:intergenic | 15.0% |
| !! | TAGATACATACATTATTTAA+TGG | + | chr3_1:90665192-90665211 | Msa0386830:intron | 15.0% |
| !! | ATTATTTAATGGAAAAAGAT+TGG | + | chr3_1:90665203-90665222 | Msa0386830:intron | 15.0% |
| !! | AATTCATAGTTTATTAAATC+AGG | - | chr3_1:90665701-90665720 | None:intergenic | 15.0% |
| !! | AGTATATAATTTCAAATCAT+AGG | - | chr3_1:90666461-90666480 | None:intergenic | 15.0% |
| !!! | AAAATTATATAAAAAGTACC+TGG | + | chr3_1:90667383-90667402 | Msa0386830:intron | 15.0% |
| !!! | AAATTATATAAAAAGTACCT+GGG | + | chr3_1:90667384-90667403 | Msa0386830:intron | 15.0% |
| !! | CAAATTTATTTCCATGAATT+AGG | + | chr3_1:90662972-90662991 | Msa0386830:intron | 20.0% |
| !!! | TCATTTGCTTTTGATATTTT+CGG | - | chr3_1:90663616-90663635 | None:intergenic | 20.0% |
| !!! | AATTTTCCCTAATTAATATG+CGG | - | chr3_1:90663902-90663921 | None:intergenic | 20.0% |
| !! | TCATCATACAAAATATTAAG+AGG | - | chr3_1:90664135-90664154 | None:intergenic | 20.0% |
| !!! | AGTTAGAAAATTGACTTTTT+TGG | - | chr3_1:90664262-90664281 | None:intergenic | 20.0% |
| !! | AACTGTACTTAAGAAAAAAA+TGG | - | chr3_1:90664528-90664547 | None:intergenic | 20.0% |
| !! | CTCTTTAAATTAATAATGTC+AGG | + | chr3_1:90664552-90664571 | Msa0386830:intron | 20.0% |
| !! | AAACTCTTTGAATTAATACT+CGG | - | chr3_1:90665015-90665034 | None:intergenic | 20.0% |
| !!! | GTATTTTTTCTATATCTTCA+AGG | + | chr3_1:90665895-90665914 | Msa0386830:intron | 20.0% |
| !!! | GTATTTTTTCTTTATCTTCA+AGG | + | chr3_1:90665934-90665953 | Msa0386830:intron | 20.0% |
| !! | TACTTTAAATACAATGTTAG+CGG | - | chr3_1:90666359-90666378 | None:intergenic | 20.0% |
| !!! | TTGTATTTAAAGTAACTGAA+TGG | + | chr3_1:90666365-90666384 | Msa0386830:intron | 20.0% |
| !!! | CATTTCTATTTTTAATGTGT+AGG | + | chr3_1:90666761-90666780 | Msa0386830:intron | 20.0% |
| !!! | ATGTGTACATTTTTAAAGTT+TGG | - | chr3_1:90667007-90667026 | None:intergenic | 20.0% |
| !!! | AAACTTTAAAAATGTACACA+TGG | + | chr3_1:90667006-90667025 | Msa0386830:intron | 20.0% |
| !!! | AATTATATAAAAAGTACCTG+GGG | + | chr3_1:90667385-90667404 | Msa0386830:intron | 20.0% |
| !! | TATTCCGAAAATTTAATGAT+GGG | - | chr3_1:90667419-90667438 | None:intergenic | 20.0% |
| !!! | TAGTTTATTTTATATGCTTG+TGG | + | chr3_1:90667554-90667573 | Msa0386830:intron | 20.0% |
| ! | CAACATAAATCAATAGTTTG+TGG | - | chr3_1:90662697-90662716 | None:intergenic | 25.0% |
| !!! | CACAAACTATTGATTTATGT+TGG | + | chr3_1:90662695-90662714 | Msa0386830:intron | 25.0% |
| ! | AAGAATAAGTGAGATGTTTA+AGG | + | chr3_1:90663181-90663200 | Msa0386830:intron | 25.0% |
| ! | ACAATTCATCGTTATATGTA+GGG | - | chr3_1:90663221-90663240 | None:intergenic | 25.0% |
| ! | AACAATTCATCGTTATATGT+AGG | - | chr3_1:90663222-90663241 | None:intergenic | 25.0% |
| ! | TCAACTAAACTATATTCATG+AGG | + | chr3_1:90663257-90663276 | Msa0386830:intron | 25.0% |
| ! | TTGTTCTTATAAAAAAGGGA+AGG | - | chr3_1:90663322-90663341 | None:intergenic | 25.0% |
| ! | TATCAAGAATTACTTACACT+TGG | + | chr3_1:90663468-90663487 | Msa0386830:intron | 25.0% |
| ! | ATAACAATTTCATGTCTACT+AGG | - | chr3_1:90663540-90663559 | None:intergenic | 25.0% |
| ! | GTATCAGTAAAGATTAAAGA+AGG | - | chr3_1:90663877-90663896 | None:intergenic | 25.0% |
| !! | ATTTTCCCTAATTAATATGC+GGG | - | chr3_1:90663901-90663920 | None:intergenic | 25.0% |
| ! | ATACACAAATGTTCAATGAT+TGG | - | chr3_1:90663970-90663989 | None:intergenic | 25.0% |
| ! | TATATAATGACACAACTTGT+GGG | - | chr3_1:90664036-90664055 | None:intergenic | 25.0% |
| ! | ATATATAATGACACAACTTG+TGG | - | chr3_1:90664037-90664056 | None:intergenic | 25.0% |
| !!! | ATGATGACTGATTTGTAATA+AGG | + | chr3_1:90664148-90664167 | Msa0386830:intron | 25.0% |
| !! | TATTACAAGTCTTTTATCGA+AGG | + | chr3_1:90664498-90664517 | Msa0386830:intron | 25.0% |
| ! | TAAATTAATAATGTCAGGAC+AGG | + | chr3_1:90664557-90664576 | Msa0386830:intron | 25.0% |
| !!! | GACTAATTTGTCTTTTTGTT+TGG | - | chr3_1:90664672-90664691 | None:intergenic | 25.0% |
| ! | GTACAATAAATGTAAACAAG+AGG | + | chr3_1:90664790-90664809 | Msa0386830:intron | 25.0% |
| ! | TTCTTATAAAAAAGATCGGA+GGG | - | chr3_1:90665116-90665135 | None:intergenic | 25.0% |
| ! | TTTCTTATAAAAAAGATCGG+AGG | - | chr3_1:90665117-90665136 | None:intergenic | 25.0% |
| ! | AAGCATATCTTAAACTTCTA+TGG | - | chr3_1:90665815-90665834 | None:intergenic | 25.0% |
| !! | AAGTTTAAGATATGCTTACT+AGG | + | chr3_1:90665818-90665837 | Msa0386830:intron | 25.0% |
| !!! | TTTTTTCTATATCTTCAAGG+TGG | + | chr3_1:90665898-90665917 | Msa0386830:intron | 25.0% |
| !!! | TTTTTTCTTTATCTTCAAGG+TGG | + | chr3_1:90665937-90665956 | Msa0386830:intron | 25.0% |
| ! | ATAGAGTCGAAAAAAGAAAA+AGG | + | chr3_1:90666036-90666055 | Msa0386830:intron | 25.0% |
| !! | TTAATCATTTAGTCCGTTTT+TGG | + | chr3_1:90666427-90666446 | Msa0386830:intron | 25.0% |
| !!! | TAATCATTTAGTCCGTTTTT+GGG | + | chr3_1:90666428-90666447 | Msa0386830:intron | 25.0% |
| ! | AAAATGTGAAAGAAAAAGCA+AGG | - | chr3_1:90666630-90666649 | None:intergenic | 25.0% |
| !! | TTTCCTTCTTACAAAGTATT+TGG | + | chr3_1:90666882-90666901 | Msa0386830:intron | 25.0% |
| !! | CATTCCCATCATTAAATTTT+CGG | + | chr3_1:90667412-90667431 | Msa0386830:intron | 25.0% |
| ! | CTATTCCGAAAATTTAATGA+TGG | - | chr3_1:90667420-90667439 | None:intergenic | 25.0% |
| !!! | ATTTTCGGAATAGTTATTTC+TGG | + | chr3_1:90667427-90667446 | Msa0386830:intron | 25.0% |
| !! | TCTTCTCTTACAACTTTTAA+AGG | - | chr3_1:90668018-90668037 | None:intergenic | 25.0% |
| GGATAACTTTCAAGAACTAT+TGG | + | chr3_1:90662716-90662735 | Msa0386830:intron | 30.0% | |
| CCTATGATAGTTTAAACACT+CGG | + | chr3_1:90662791-90662810 | Msa0386830:intron | 30.0% | |
| GGAAATAAACTATGATCAAC+AGG | + | chr3_1:90662896-90662915 | Msa0386830:intron | 30.0% | |
| AAGAAATCACAAAAGCTACA+AGG | - | chr3_1:90663034-90663053 | None:intergenic | 30.0% | |
| ! | TTTTAATAATACGCCACATG+TGG | - | chr3_1:90663107-90663126 | None:intergenic | 30.0% |
| ! | TCGTTATATGTAGGGATTTT+GGG | - | chr3_1:90663213-90663232 | None:intergenic | 30.0% |
| ! | ATCGTTATATGTAGGGATTT+TGG | - | chr3_1:90663214-90663233 | None:intergenic | 30.0% |
| TTAGTTGACTACAAGAAGTT+AGG | - | chr3_1:90663245-90663264 | None:intergenic | 30.0% | |
| TCTTATAAAAAAGGGAAGGA+TGG | - | chr3_1:90663318-90663337 | None:intergenic | 30.0% | |
| AAAAGTTGCGTCAAACAAAA+TGG | - | chr3_1:90663683-90663702 | None:intergenic | 30.0% | |
| ! | TTTGTTTGACGCAACTTTTA+TGG | + | chr3_1:90663684-90663703 | Msa0386830:intron | 30.0% |
| TAGATAGAAGATTGACACTT+CGG | - | chr3_1:90663824-90663843 | None:intergenic | 30.0% | |
| AGTGTCAATCTTCTATCTAA+TGG | + | chr3_1:90663825-90663844 | Msa0386830:intron | 30.0% | |
| ATACTCCCGCATATTAATTA+GGG | + | chr3_1:90663893-90663912 | Msa0386830:intron | 30.0% | |
| ! | AGTCATGAAAATGACTTTTC+TGG | + | chr3_1:90663931-90663950 | Msa0386830:intron | 30.0% |
| !!! | GGTAAAGTTTAGTTTTAGAG+TGG | + | chr3_1:90664169-90664188 | Msa0386830:intron | 30.0% |
| ! | GGGAGATCCTTTATAATTTT+CGG | - | chr3_1:90664891-90664910 | None:intergenic | 30.0% |
| AAAATACTCATGCCACATAA+GGG | - | chr3_1:90665263-90665282 | None:intergenic | 30.0% | |
| AAAAATACTCATGCCACATA+AGG | - | chr3_1:90665264-90665283 | None:intergenic | 30.0% | |
| TATTGCATCAGTTCTCAAAA+TGG | - | chr3_1:90665678-90665697 | None:intergenic | 30.0% | |
| !!! | ACACATGTTTTGATACAAAG+AGG | - | chr3_1:90665782-90665801 | None:intergenic | 30.0% |
| AATGATACTGTCATACATGT+TGG | + | chr3_1:90665873-90665892 | Msa0386830:intron | 30.0% | |
| ATTGAGTAGCATCTTAAAGA+TGG | - | chr3_1:90666018-90666037 | None:intergenic | 30.0% | |
| AGTCGAAAAAAGAAAAAGGT+TGG | + | chr3_1:90666040-90666059 | Msa0386830:intron | 30.0% | |
| GTCGAAAAAAGAAAAAGGTT+GGG | + | chr3_1:90666041-90666060 | Msa0386830:intron | 30.0% | |
| TCTACAATACGTAGAAGATA+GGG | - | chr3_1:90666199-90666218 | None:intergenic | 30.0% | |
| ! | ATAGGCATTTTTCCCAAAAA+CGG | - | chr3_1:90666443-90666462 | None:intergenic | 30.0% |
| !!! | GATGGAACAATTTTTTCCTA+AGG | - | chr3_1:90666927-90666946 | None:intergenic | 30.0% |
| TGGTTGCAAAATTTATTCCT+TGG | + | chr3_1:90667048-90667067 | Msa0386830:intron | 30.0% | |
| GAACAAAATGATTTCCATGT+GGG | + | chr3_1:90667086-90667105 | Msa0386830:intron | 30.0% | |
| AATAGTCTTTCATAGAAGTG+GGG | - | chr3_1:90667336-90667355 | None:intergenic | 30.0% | |
| CAATAGTCTTTCATAGAAGT+GGG | - | chr3_1:90667337-90667356 | None:intergenic | 30.0% | |
| CACTTCTATGAAAGACTATT+GGG | + | chr3_1:90667336-90667355 | Msa0386830:intron | 30.0% | |
| TATGAAAGACTATTGGGATT+TGG | + | chr3_1:90667342-90667361 | Msa0386830:intron | 30.0% | |
| ATGAAAGACTATTGGGATTT+GGG | + | chr3_1:90667343-90667362 | Msa0386830:intron | 30.0% | |
| GTATTAGATGATGATTGATC+TGG | + | chr3_1:90667531-90667550 | Msa0386830:intron | 30.0% | |
| TTGTCATACATGTTAATGCA+AGG | - | chr3_1:90667841-90667860 | None:intergenic | 30.0% | |
| TTGCATTAACATGTATGACA+AGG | + | chr3_1:90667840-90667859 | Msa0386830:CDS | 30.0% | |
| TTTCAAGAACTATTGGTCCT+TGG | + | chr3_1:90662723-90662742 | Msa0386830:intron | 35.0% | |
| ! | CTTGATTATTTTCTCCTCCA+AGG | - | chr3_1:90662743-90662762 | None:intergenic | 35.0% |
| CCGAGTGTTTAAACTATCAT+AGG | - | chr3_1:90662794-90662813 | None:intergenic | 35.0% | |
| TGTGCTTAGACTCAGTTATT+TGG | + | chr3_1:90662931-90662950 | Msa0386830:intron | 35.0% | |
| ATCATTCTGCACCTAATTCA+TGG | - | chr3_1:90662986-90663005 | None:intergenic | 35.0% | |
| ACACGTAATCACAACATTCA+TGG | + | chr3_1:90663513-90663532 | Msa0386830:intron | 35.0% | |
| TGTTGTTAACCTTCTGCATA+AGG | - | chr3_1:90663578-90663597 | None:intergenic | 35.0% | |
| GATACTCCCGCATATTAATT+AGG | + | chr3_1:90663892-90663911 | Msa0386830:intron | 35.0% | |
| CGTCAGATTATATGGTGTAT+TGG | + | chr3_1:90664003-90664022 | Msa0386830:intron | 35.0% | |
| GACATCGACAGTTATACTAT+TGG | + | chr3_1:90664218-90664237 | Msa0386830:intron | 35.0% | |
| CTAATTAATGGGAGCTTCTA+CGG | - | chr3_1:90664288-90664307 | None:intergenic | 35.0% | |
| CTTGGGACCGAAAATTATAA+AGG | + | chr3_1:90664881-90664900 | Msa0386830:intron | 35.0% | |
| !!! | TTTTTTACATTGGCCCAAGT+CGG | + | chr3_1:90664949-90664968 | Msa0386830:intron | 35.0% |
| !!! | ATCGGAGGGAGTATTATTTT+TGG | - | chr3_1:90665102-90665121 | None:intergenic | 35.0% |
| AAATACTCATGCCACATAAG+GGG | - | chr3_1:90665262-90665281 | None:intergenic | 35.0% | |
| GAGAAATGAAGAGTCAATGA+GGG | - | chr3_1:90665367-90665386 | None:intergenic | 35.0% | |
| AGAGAAATGAAGAGTCAATG+AGG | - | chr3_1:90665368-90665387 | None:intergenic | 35.0% | |
| CATCAGTTCTCAAAATGGAA+TGG | - | chr3_1:90665673-90665692 | None:intergenic | 35.0% | |
| GAAGCTTAATAGATTGCTAG+TGG | + | chr3_1:90666167-90666186 | Msa0386830:intron | 35.0% | |
| CTCTACAATACGTAGAAGAT+AGG | - | chr3_1:90666200-90666219 | None:intergenic | 35.0% | |
| TCGATGACAGATATGAAGTT+CGG | + | chr3_1:90666244-90666263 | Msa0386830:intron | 35.0% | |
| ACAGATATGAAGTTCGGTTA+GGG | + | chr3_1:90666250-90666269 | Msa0386830:intron | 35.0% | |
| AATAACAAATGCCGCTCATT+CGG | + | chr3_1:90666545-90666564 | Msa0386830:intron | 35.0% | |
| GATTACAAAAACCGAATGAG+CGG | - | chr3_1:90666559-90666578 | None:intergenic | 35.0% | |
| ACCACAGAGCAATGAAATAA+TGG | - | chr3_1:90666656-90666675 | None:intergenic | 35.0% | |
| ACTTTGTAAGAAGGAAAGTG+AGG | - | chr3_1:90666879-90666898 | None:intergenic | 35.0% | |
| GCACCAAATACTTTGTAAGA+AGG | - | chr3_1:90666888-90666907 | None:intergenic | 35.0% | |
| TGCAACCATATAGCAAACAT+GGG | - | chr3_1:90667036-90667055 | None:intergenic | 35.0% | |
| TTGCAACCATATAGCAAACA+TGG | - | chr3_1:90667037-90667056 | None:intergenic | 35.0% | |
| TCCTTGGCATAAAAGATTTC+TGG | + | chr3_1:90667064-90667083 | Msa0386830:intron | 35.0% | |
| ! | TCCAGAAATCTTTTATGCCA+AGG | - | chr3_1:90667068-90667087 | None:intergenic | 35.0% |
| GGAACAAAATGATTTCCATG+TGG | + | chr3_1:90667085-90667104 | Msa0386830:intron | 35.0% | |
| AAAATGATTTCCATGTGGGA+GGG | + | chr3_1:90667090-90667109 | Msa0386830:intron | 35.0% | |
| TTGAGAAATAGATTCCCATG+AGG | + | chr3_1:90667114-90667133 | Msa0386830:intron | 35.0% | |
| ! | AGAATTTGTTCACACCTCAT+GGG | - | chr3_1:90667131-90667150 | None:intergenic | 35.0% |
| !! | GGATGTTTTTATAACCTCCA+CGG | + | chr3_1:90667220-90667239 | Msa0386830:intron | 35.0% |
| ! | GGATTTTAAGCTTTTCGCAA+TGG | + | chr3_1:90667277-90667296 | Msa0386830:intron | 35.0% |
| ! | TAGAGCAATGTTATCGATTG+CGG | - | chr3_1:90667311-90667330 | None:intergenic | 35.0% |
| CCAATAGTCTTTCATAGAAG+TGG | - | chr3_1:90667338-90667357 | None:intergenic | 35.0% | |
| CCACTTCTATGAAAGACTAT+TGG | + | chr3_1:90667335-90667354 | Msa0386830:intron | 35.0% | |
| !! | TTTTCTGCTTTTCTGACTTG+AGG | + | chr3_1:90667585-90667604 | Msa0386830:intron | 35.0% |
| !! | ATGCTACTTTGTTTGGTAGT+TGG | + | chr3_1:90668088-90668107 | Msa0386830:CDS | 35.0% |
| CTTCTGGTACGAAATTAGAA+GGG | + | chr3_1:90668148-90668167 | Msa0386830:CDS | 35.0% | |
| TTCTGGTACGAAATTAGAAG+GGG | + | chr3_1:90668149-90668168 | Msa0386830:CDS | 35.0% | |
| AAGAAACTTTGTTCACTGCG+AGG | - | chr3_1:90662824-90662843 | None:intergenic | 40.0% | |
| TTTCCTATCAGCACACTGAT+TGG | + | chr3_1:90662869-90662888 | Msa0386830:intron | 40.0% | |
| ! | TTCCTATCAGCACACTGATT+GGG | + | chr3_1:90662870-90662889 | Msa0386830:intron | 40.0% |
| AAAAAGGGAAGGATGGAGAA+TGG | - | chr3_1:90663311-90663330 | None:intergenic | 40.0% | |
| CTTCTGCATAAGGTTCAAAG+GGG | - | chr3_1:90663568-90663587 | None:intergenic | 40.0% | |
| CCTTCTGCATAAGGTTCAAA+GGG | - | chr3_1:90663569-90663588 | None:intergenic | 40.0% | |
| ACCTTCTGCATAAGGTTCAA+AGG | - | chr3_1:90663570-90663589 | None:intergenic | 40.0% | |
| TGCAGAAGGTTAACAACATC+TGG | + | chr3_1:90663580-90663599 | Msa0386830:intron | 40.0% | |
| TTATGGTGTACGGATGAGTA+GGG | - | chr3_1:90663791-90663810 | None:intergenic | 40.0% | |
| CATGTGGATGTTATGGTGTA+CGG | - | chr3_1:90663801-90663820 | None:intergenic | 40.0% | |
| CCATATAATCTGACGTGACA+TGG | - | chr3_1:90663998-90664017 | None:intergenic | 40.0% | |
| CCATGTCACGTCAGATTATA+TGG | + | chr3_1:90663995-90664014 | Msa0386830:intron | 40.0% | |
| GTAATTTACGTTGAGTCCCA+AGG | - | chr3_1:90664724-90664743 | None:intergenic | 40.0% | |
| ! | TTTTTACATTGGCCCAAGTC+GGG | + | chr3_1:90664950-90664969 | Msa0386830:intron | 40.0% |
| !! | GGAGTGCTGATACATAAACA+GGG | - | chr3_1:90665315-90665334 | None:intergenic | 40.0% |
| TCTCTCTATGCGAGTATCAA+TGG | + | chr3_1:90665391-90665410 | Msa0386830:intron | 40.0% | |
| ATAGCAAGAAGGAAGCTATG+AGG | - | chr3_1:90665451-90665470 | None:intergenic | 40.0% | |
| AGTTCTCAAAATGGAATGGC+TGG | - | chr3_1:90665669-90665688 | None:intergenic | 40.0% | |
| TTGATACAAAGAGGACCAAC+AGG | - | chr3_1:90665773-90665792 | None:intergenic | 40.0% | |
| GACAGATATGAAGTTCGGTT+AGG | + | chr3_1:90666249-90666268 | Msa0386830:intron | 40.0% | |
| ! | CCGGGTGATTTTACTTTGAT+GGG | - | chr3_1:90666310-90666329 | None:intergenic | 40.0% |
| CCCATCAAAGTAAAATCACC+CGG | + | chr3_1:90666307-90666326 | Msa0386830:intron | 40.0% | |
| ! | ACCGGGTGATTTTACTTTGA+TGG | - | chr3_1:90666311-90666330 | None:intergenic | 40.0% |
| ATTGACCACATTGTGCTTTG+TGG | + | chr3_1:90666401-90666420 | Msa0386830:intron | 40.0% | |
| TTGACCACATTGTGCTTTGT+GGG | + | chr3_1:90666402-90666421 | Msa0386830:intron | 40.0% | |
| GCCATTATTTCATTGCTCTG+TGG | + | chr3_1:90666652-90666671 | Msa0386830:intron | 40.0% | |
| GCTTGTAAGTCTTACTGACA+CGG | - | chr3_1:90666959-90666978 | None:intergenic | 40.0% | |
| !! | GTCTTCCCATGTTTGCTATA+TGG | + | chr3_1:90667028-90667047 | Msa0386830:intron | 40.0% |
| CAAAATGATTTCCATGTGGG+AGG | + | chr3_1:90667089-90667108 | Msa0386830:intron | 40.0% | |
| ! | CAGAATTTGTTCACACCTCA+TGG | - | chr3_1:90667132-90667151 | None:intergenic | 40.0% |
| ATTTGAGAACACTGGTGTAG+AGG | - | chr3_1:90667188-90667207 | None:intergenic | 40.0% | |
| GGTTATAAAAACATCCGCCA+CGG | - | chr3_1:90667216-90667235 | None:intergenic | 40.0% | |
| ! | TAATTTGCGAAGGATGTGGT+GGG | + | chr3_1:90667244-90667263 | Msa0386830:intron | 40.0% |
| !! | GATGTGGTGGGTTAAAATGA+CGG | + | chr3_1:90667256-90667275 | Msa0386830:intron | 40.0% |
| !! | TGCTTTTCTGACTTGAGGTA+AGG | + | chr3_1:90667590-90667609 | Msa0386830:intron | 40.0% |
| ! | TGTTGATGAACCTGTTTCCA+CGG | - | chr3_1:90667698-90667717 | None:intergenic | 40.0% |
| CCTACGACGTTTATTGCTTT+GGG | + | chr3_1:90667728-90667747 | Msa0386830:CDS | 40.0% | |
| !! | TGGGAAAGTGTTACTTGAAC+TGG | + | chr3_1:90667747-90667766 | Msa0386830:CDS | 40.0% |
| ! | TTCCAGTGAGGGTGTATTAA+GGG | + | chr3_1:90667795-90667814 | Msa0386830:CDS | 40.0% |
| TGTGGATGAGGATTTCTTAG+AGG | + | chr3_1:90667897-90667916 | Msa0386830:CDS | 40.0% | |
| AGGATTTCTTAGAGGAAGTG+TGG | + | chr3_1:90667905-90667924 | Msa0386830:CDS | 40.0% | |
| ! | GGATTTCTTAGAGGAAGTGT+GGG | + | chr3_1:90667906-90667925 | Msa0386830:CDS | 40.0% |
| !!! | GTCTTGAAGGTTTTGGGTTT+AGG | - | chr3_1:90667957-90667976 | None:intergenic | 40.0% |
| TTGAGAACATATCTCATCGG+TGG | - | chr3_1:90667982-90668001 | None:intergenic | 40.0% | |
| ACCGATGAGATATGTTCTCA+AGG | + | chr3_1:90667981-90668000 | Msa0386830:CDS | 40.0% | |
| GCCTTGAGAACATATCTCAT+CGG | - | chr3_1:90667985-90668004 | None:intergenic | 40.0% | |
| GAGATATGTTCTCAAGGCTT+TGG | + | chr3_1:90667987-90668006 | Msa0386830:CDS | 40.0% | |
| ! | AAGAAAGTTCGAGTTCTGCA+CGG | + | chr3_1:90668034-90668053 | Msa0386830:CDS | 40.0% |
| !! | TCGTGGAATGCTACTTTGTT+TGG | + | chr3_1:90668081-90668100 | Msa0386830:CDS | 40.0% |
| GCTTCTGGTACGAAATTAGA+AGG | + | chr3_1:90668147-90668166 | Msa0386830:CDS | 40.0% | |
| ACATCAGGTAAGCCAAATGA+TGG | - | chr3_1:90668249-90668268 | None:intergenic | 40.0% | |
| CAAGAACTATTGGTCCTTGG+AGG | + | chr3_1:90662726-90662745 | Msa0386830:intron | 45.0% | |
| AACGACCAATTTCACTCGCA+GGG | - | chr3_1:90662768-90662787 | None:intergenic | 45.0% | |
| ! | TTCCCAATCAGTGTGCTGAT+AGG | - | chr3_1:90662875-90662894 | None:intergenic | 45.0% |
| ! | ATCAGCACACTGATTGGGAA+AGG | + | chr3_1:90662875-90662894 | Msa0386830:intron | 45.0% |
| GTGATGTTCTACACCACATG+TGG | + | chr3_1:90663091-90663110 | Msa0386830:intron | 45.0% | |
| CCCTTTGAACCTTATGCAGA+AGG | + | chr3_1:90663566-90663585 | Msa0386830:intron | 45.0% | |
| ! | CACTAGTTGGATTAGGTGTC+GGG | - | chr3_1:90663732-90663751 | None:intergenic | 45.0% |
| ! | CCACTAGTTGGATTAGGTGT+CGG | - | chr3_1:90663733-90663752 | None:intergenic | 45.0% |
| GGTTCACCACTAGTTGGATT+AGG | - | chr3_1:90663739-90663758 | None:intergenic | 45.0% | |
| ATGCGTGTGTGGACTTGATT+GGG | - | chr3_1:90663762-90663781 | None:intergenic | 45.0% | |
| TATGGTGTACGGATGAGTAG+GGG | - | chr3_1:90663790-90663809 | None:intergenic | 45.0% | |
| GTTATGGTGTACGGATGAGT+AGG | - | chr3_1:90663792-90663811 | None:intergenic | 45.0% | |
| ACTTCGGCATGTGGATGTTA+TGG | - | chr3_1:90663808-90663827 | None:intergenic | 45.0% | |
| AAGATTGACACTTCGGCATG+TGG | - | chr3_1:90663817-90663836 | None:intergenic | 45.0% | |
| CGCTGCAACGTAATTCTAAG+AGG | - | chr3_1:90664699-90664718 | None:intergenic | 45.0% | |
| AATTACGTTGCAGCGAACCT+TGG | + | chr3_1:90664704-90664723 | Msa0386830:intron | 45.0% | |
| ATTACGTTGCAGCGAACCTT+GGG | + | chr3_1:90664705-90664724 | Msa0386830:intron | 45.0% | |
| TGGAAGAGTGGTATGGAGAA+GGG | - | chr3_1:90665235-90665254 | None:intergenic | 45.0% | |
| ATGGAAGAGTGGTATGGAGA+AGG | - | chr3_1:90665236-90665255 | None:intergenic | 45.0% | |
| ! | ATAAGGGGTGTATGGAAGAG+TGG | - | chr3_1:90665247-90665266 | None:intergenic | 45.0% |
| TCTTCCATACACCCCTTATG+TGG | + | chr3_1:90665248-90665267 | Msa0386830:intron | 45.0% | |
| !! | GGGAGTGCTGATACATAAAC+AGG | - | chr3_1:90665316-90665335 | None:intergenic | 45.0% |
| AATGAGGGAGAAAGAGAGAG+AGG | - | chr3_1:90665352-90665371 | None:intergenic | 45.0% | |
| CTCTATGCGAGTATCAATGG+CGG | + | chr3_1:90665394-90665413 | Msa0386830:intron | 45.0% | |
| GAGAAATGCGATCAGAGGTT+TGG | - | chr3_1:90665429-90665448 | None:intergenic | 45.0% | |
| ATGAGGAGAAATGCGATCAG+AGG | - | chr3_1:90665434-90665453 | None:intergenic | 45.0% | |
| TTCTTGTGAGCGACGATGAA+AGG | - | chr3_1:90665497-90665516 | None:intergenic | 45.0% | |
| ACAAGAAAGCCTCTCTCAAC+AGG | + | chr3_1:90665510-90665529 | Msa0386830:intron | 45.0% | |
| !!! | AGTTTTGAGCCTGTTGAGAG+AGG | - | chr3_1:90665522-90665541 | None:intergenic | 45.0% |
| TCTCTCAACAGGCTCAAAAC+TGG | + | chr3_1:90665521-90665540 | Msa0386830:intron | 45.0% | |
| CCTTCGTAAAGATGCAACGA+GGG | - | chr3_1:90665739-90665758 | None:intergenic | 45.0% | |
| TCCTTCGTAAAGATGCAACG+AGG | - | chr3_1:90665740-90665759 | None:intergenic | 45.0% | |
| AAGGATTCAACCCTTCCTGT+TGG | + | chr3_1:90665755-90665774 | Msa0386830:intron | 45.0% | |
| ACAAAGAGGACCAACAGGAA+GGG | - | chr3_1:90665768-90665787 | None:intergenic | 45.0% | |
| TACAAAGAGGACCAACAGGA+AGG | - | chr3_1:90665769-90665788 | None:intergenic | 45.0% | |
| TCAAGGTGGCTGTGTATAGT+TGG | + | chr3_1:90665912-90665931 | Msa0386830:intron | 45.0% | |
| TGGCTGTGTATAGTAGTGAC+TGG | + | chr3_1:90665957-90665976 | Msa0386830:intron | 45.0% | |
| GGCTGTGTATAGTAGTGACT+GGG | + | chr3_1:90665958-90665977 | Msa0386830:intron | 45.0% | |
| ATCGACTGATCAAGTGTGCT+TGG | + | chr3_1:90666105-90666124 | Msa0386830:intron | 45.0% | |
| CTGATCAAGTGTGCTTGGAA+TGG | + | chr3_1:90666110-90666129 | Msa0386830:intron | 45.0% | |
| ! | TGTTAGCGGAGTACTTACTG+AGG | - | chr3_1:90666345-90666364 | None:intergenic | 45.0% |
| AAGTCCCACAAAGCACAATG+TGG | - | chr3_1:90666409-90666428 | None:intergenic | 45.0% | |
| TCACTGCTCGTTAACTTTCC+TGG | + | chr3_1:90666577-90666596 | Msa0386830:intron | 45.0% | |
| CACTGCTCGTTAACTTTCCT+GGG | + | chr3_1:90666578-90666597 | Msa0386830:intron | 45.0% | |
| ATGTGTAGGTCCTCTGAACA+AGG | + | chr3_1:90666775-90666794 | Msa0386830:intron | 45.0% | |
| !! | CAAAGTATTTGGTGCATGCG+TGG | + | chr3_1:90666893-90666912 | Msa0386830:intron | 45.0% |
| ! | ATGCGTGGATTTGCTTCCTT+AGG | + | chr3_1:90666908-90666927 | Msa0386830:intron | 45.0% |
| ! | TCTTACTGACACGGCTTTTG+GGG | - | chr3_1:90666950-90666969 | None:intergenic | 45.0% |
| ! | GTCTTACTGACACGGCTTTT+GGG | - | chr3_1:90666951-90666970 | None:intergenic | 45.0% |
| ! | AGTCTTACTGACACGGCTTT+TGG | - | chr3_1:90666952-90666971 | None:intergenic | 45.0% |
| ATTTCTCAATCCCTCCCACA+TGG | - | chr3_1:90667103-90667122 | None:intergenic | 45.0% | |
| ACTGGTGTAGAGGCAGTTAT+AGG | - | chr3_1:90667178-90667197 | None:intergenic | 45.0% | |
| CGGCTGATATTTGAGAACAC+TGG | - | chr3_1:90667196-90667215 | None:intergenic | 45.0% | |
| GTGTTCTCAAATATCAGCCG+TGG | + | chr3_1:90667196-90667215 | Msa0386830:intron | 45.0% | |
| TTCTCAAATATCAGCCGTGG+CGG | + | chr3_1:90667199-90667218 | Msa0386830:intron | 45.0% | |
| ! | CTAATTTGCGAAGGATGTGG+TGG | + | chr3_1:90667243-90667262 | Msa0386830:intron | 45.0% |
| ! | ATGATGGGAATGTTATCCCC+AGG | - | chr3_1:90667404-90667423 | None:intergenic | 45.0% |
| AAATGCCTCGTTGCTAGTGT+TGG | + | chr3_1:90667474-90667493 | Msa0386830:intron | 45.0% | |
| ! | CAAATTTTGTGCACTGTCCG+TGG | + | chr3_1:90667678-90667697 | Msa0386830:intron | 45.0% |
| GCCTACGACGTTTATTGCTT+TGG | + | chr3_1:90667727-90667746 | Msa0386830:CDS | 45.0% | |
| CCCAAAGCAATAAACGTCGT+AGG | - | chr3_1:90667731-90667750 | None:intergenic | 45.0% | |
| !! | GTGTTACTTGAACTGGTGAC+TGG | + | chr3_1:90667754-90667773 | Msa0386830:CDS | 45.0% |
| GGAATTAGTGCTTCCAGTGA+GGG | + | chr3_1:90667784-90667803 | Msa0386830:CDS | 45.0% | |
| ! | CTTCCAGTGAGGGTGTATTA+AGG | + | chr3_1:90667794-90667813 | Msa0386830:CDS | 45.0% |
| TTCCCTTAATACACCCTCAC+TGG | - | chr3_1:90667800-90667819 | None:intergenic | 45.0% | |
| ! | GTGAGGGTGTATTAAGGGAA+TGG | + | chr3_1:90667800-90667819 | Msa0386830:CDS | 45.0% |
| CCTCATCCACAACAAGAGAT+GGG | - | chr3_1:90667888-90667907 | None:intergenic | 45.0% | |
| TCCTCATCCACAACAAGAGA+TGG | - | chr3_1:90667889-90667908 | None:intergenic | 45.0% | |
| !!! | TTTTGGGTTTAGGCATGACC+TGG | - | chr3_1:90667947-90667966 | None:intergenic | 45.0% |
| ! | GTGGTCGTCTTGAAGGTTTT+GGG | - | chr3_1:90667963-90667982 | None:intergenic | 45.0% |
| ATTTCGTACCAGAAGCTGCA+GGG | - | chr3_1:90668143-90668162 | None:intergenic | 45.0% | |
| AATTTCGTACCAGAAGCTGC+AGG | - | chr3_1:90668144-90668163 | None:intergenic | 45.0% | |
| CAACTAGTAGTTCATCGTCG+CGG | + | chr3_1:90668193-90668212 | Msa0386830:CDS | 45.0% | |
| ATATGCCCTGAGCCATCATT+TGG | + | chr3_1:90668234-90668253 | Msa0386830:CDS | 45.0% | |
| GTAAGCCAAATGATGGCTCA+GGG | - | chr3_1:90668242-90668261 | None:intergenic | 45.0% | |
| TTGGCTTACCTGATGTAGAG+AGG | + | chr3_1:90668253-90668272 | Msa0386830:CDS | 45.0% | |
| TGGCTTACCTGATGTAGAGA+GGG | + | chr3_1:90668254-90668273 | Msa0386830:CDS | 45.0% | |
| !! | AAAATATATATCTAATTAAT+GGG | - | chr3_1:90664299-90664318 | None:intergenic | 5.0% |
| !! | AAAAATATATATCTAATTAA+TGG | - | chr3_1:90664300-90664319 | None:intergenic | 5.0% |
| !!! | ATAATAAGATAATAATTTTT+CGG | - | chr3_1:90664912-90664931 | None:intergenic | 5.0% |
| !!! | ATAATTTATATATTTAGTTT+AGG | + | chr3_1:90665161-90665180 | Msa0386830:intron | 5.0% |
| AAGTCCCCTGCGAGTGAAAT+TGG | + | chr3_1:90662760-90662779 | Msa0386830:intron | 50.0% | |
| ACGACCAATTTCACTCGCAG+GGG | - | chr3_1:90662767-90662786 | None:intergenic | 50.0% | |
| GAACGACCAATTTCACTCGC+AGG | - | chr3_1:90662769-90662788 | None:intergenic | 50.0% | |
| CCGACACCTAATCCAACTAG+TGG | + | chr3_1:90663730-90663749 | Msa0386830:intron | 50.0% | |
| ATTGGGGGTTCACCACTAGT+TGG | - | chr3_1:90663745-90663764 | None:intergenic | 50.0% | |
| TGCGTGTGTGGACTTGATTG+GGG | - | chr3_1:90663761-90663780 | None:intergenic | 50.0% | |
| CATGCGTGTGTGGACTTGAT+TGG | - | chr3_1:90663763-90663782 | None:intergenic | 50.0% | |
| TAGGGGAAAACATGCGTGTG+TGG | - | chr3_1:90663773-90663792 | None:intergenic | 50.0% | |
| AATGTGTCCAGTCCCGACTT+GGG | - | chr3_1:90664965-90664984 | None:intergenic | 50.0% | |
| AAATGTGTCCAGTCCCGACT+TGG | - | chr3_1:90664966-90664985 | None:intergenic | 50.0% | |
| GGGTGTATGGAAGAGTGGTA+TGG | - | chr3_1:90665242-90665261 | None:intergenic | 50.0% | |
| ! | CATGCCACATAAGGGGTGTA+TGG | - | chr3_1:90665255-90665274 | None:intergenic | 50.0% |
| AGAGAGAGAGGAGATCTCGT+GGG | - | chr3_1:90665340-90665359 | None:intergenic | 50.0% | |
| AAGAGAGAGAGGAGATCTCG+TGG | - | chr3_1:90665341-90665360 | None:intergenic | 50.0% | |
| GCGATCAGAGGTTTGGAGAT+TGG | - | chr3_1:90665422-90665441 | None:intergenic | 50.0% | |
| AGCGACGATGAAAGGAACGT+CGG | - | chr3_1:90665489-90665508 | None:intergenic | 50.0% | |
| CCCTCGTTGCATCTTTACGA+AGG | + | chr3_1:90665736-90665755 | Msa0386830:intron | 50.0% | |
| AGTGAAGCCTGTGGTCAAGA+AGG | + | chr3_1:90666279-90666298 | Msa0386830:intron | 50.0% | |
| ACTGAGGCAATCGCAGAAAC+CGG | - | chr3_1:90666329-90666348 | None:intergenic | 50.0% | |
| ! | CTTACTGACACGGCTTTTGG+GGG | - | chr3_1:90666949-90666968 | None:intergenic | 50.0% |
| CATCCTTCGCAAATTAGCCG+TGG | - | chr3_1:90667240-90667259 | None:intergenic | 50.0% | |
| ! | CGGCTAATTTGCGAAGGATG+TGG | + | chr3_1:90667240-90667259 | Msa0386830:intron | 50.0% |
| CAAAGCCAACACTAGCAACG+AGG | - | chr3_1:90667482-90667501 | None:intergenic | 50.0% | |
| !! | GTTGCTAGTGTTGGCTTTGC+AGG | + | chr3_1:90667483-90667502 | Msa0386830:intron | 50.0% |
| TGAACTGGTGACTGGTAAGC+TGG | + | chr3_1:90667762-90667781 | Msa0386830:CDS | 50.0% | |
| GAACTGGTGACTGGTAAGCT+GGG | + | chr3_1:90667763-90667782 | Msa0386830:CDS | 50.0% | |
| GGGAATTAGTGCTTCCAGTG+AGG | + | chr3_1:90667783-90667802 | Msa0386830:CDS | 50.0% | |
| CGTTGACCCATCTCTTGTTG+TGG | + | chr3_1:90667879-90667898 | Msa0386830:CDS | 50.0% | |
| ! | CCCATCTCTTGTTGTGGATG+AGG | + | chr3_1:90667885-90667904 | Msa0386830:CDS | 50.0% |
| TAGGCATGACCTGGCAACAA+TGG | - | chr3_1:90667938-90667957 | None:intergenic | 50.0% | |
| ! | GGTGGTCGTCTTGAAGGTTT+TGG | - | chr3_1:90667964-90667983 | None:intergenic | 50.0% |
| CTGAAAGCAACCTCTTCCAG+AGG | + | chr3_1:90668057-90668076 | Msa0386830:CDS | 50.0% | |
| ACCAGAAGCTGCAGGGATTA+CGG | - | chr3_1:90668136-90668155 | None:intergenic | 50.0% | |
| GGTAAGCCAAATGATGGCTC+AGG | - | chr3_1:90668243-90668262 | None:intergenic | 50.0% | |
| CTTACCTGATGTAGAGAGGG+TGG | + | chr3_1:90668257-90668276 | Msa0386830:CDS | 50.0% | |
| GCGTGTGTGGACTTGATTGG+GGG | - | chr3_1:90663760-90663779 | None:intergenic | 55.0% | |
| CATGTCAGCTAGTGTCGTGC+TGG | - | chr3_1:90664199-90664218 | None:intergenic | 55.0% | |
| AGAGAGGAGATCTCGTGGGA+GGG | - | chr3_1:90665336-90665355 | None:intergenic | 55.0% | |
| AGCGTGCGAGCATAGCAAGA+AGG | - | chr3_1:90665462-90665481 | None:intergenic | 55.0% | |
| GACGATGAAAGGAACGTCGG+AGG | - | chr3_1:90665486-90665505 | None:intergenic | 55.0% | |
| GGGAGTCTAAGTGAAGCCTG+TGG | + | chr3_1:90666270-90666289 | Msa0386830:intron | 55.0% | |
| GGCATCACCTTCTTGACCAC+AGG | - | chr3_1:90666289-90666308 | None:intergenic | 55.0% | |
| CTGAGGCAATCGCAGAAACC+GGG | - | chr3_1:90666328-90666347 | None:intergenic | 55.0% | |
| TTTCCTGGGCTTTGCAACGC+TGG | + | chr3_1:90666592-90666611 | Msa0386830:intron | 55.0% | |
| AATCCAGCGTTGCAAAGCCC+AGG | - | chr3_1:90666598-90666617 | None:intergenic | 55.0% | |
| TCCTCTGAACAAGGCGCATC+TGG | + | chr3_1:90666784-90666803 | Msa0386830:CDS | 55.0% | |
| ! | ACCAGATGCGCCTTGTTCAG+AGG | - | chr3_1:90666788-90666807 | None:intergenic | 55.0% |
| CCTTCGCAAATTAGCCGTGG+AGG | - | chr3_1:90667237-90667256 | None:intergenic | 55.0% | |
| ! | CCTCCACGGCTAATTTGCGA+AGG | + | chr3_1:90667234-90667253 | Msa0386830:intron | 55.0% |
| TGTGCACTGTCCGTGGAAAC+AGG | + | chr3_1:90667685-90667704 | Msa0386830:intron | 55.0% | |
| GGGCAATAGCCATTGTTGCC+AGG | + | chr3_1:90667926-90667945 | Msa0386830:CDS | 55.0% | |
| CTCATCGGTGGTCGTCTTGA+AGG | - | chr3_1:90667970-90667989 | None:intergenic | 55.0% | |
| ! | ATTCCACGAGCCTCTGGAAG+AGG | - | chr3_1:90668070-90668089 | None:intergenic | 55.0% |
| AGTAGCATTCCACGAGCCTC+TGG | - | chr3_1:90668076-90668095 | None:intergenic | 55.0% | |
| GTCAGCTAGTGTCGTGCTGG+TGG | - | chr3_1:90664196-90664215 | None:intergenic | 60.0% | |
| ACATTGGCCCAAGTCGGGAC+TGG | + | chr3_1:90664955-90664974 | Msa0386830:intron | 60.0% | |
| GAGAGAGGAGATCTCGTGGG+AGG | - | chr3_1:90665337-90665356 | None:intergenic | 60.0% | |
| !! | CTGACACGGCTTTTGGGGGA+TGG | - | chr3_1:90666945-90666964 | None:intergenic | 60.0% |
| CAACCTCTTCCAGAGGCTCG+TGG | + | chr3_1:90668064-90668083 | Msa0386830:CDS | 60.0% | |
| GCCGTAATCCCTGCAGCTTC+TGG | + | chr3_1:90668132-90668151 | Msa0386830:CDS | 60.0% | |
| GGGTCCACCCTCTCTACATC+AGG | - | chr3_1:90668264-90668283 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 90662675 | 90668287 | 90662675 | ID=Msa0386830;Name=Msa0386830 |
| chr3_1 | mRNA | 90662675 | 90668287 | 90662675 | ID=Msa0386830-mRNA-1;Parent=Msa0386830;Name=Msa0386830-mRNA-1;_AED=0.64;_eAED=0.64;_QI=0|0|0|0.33|1|1|3|0|202 |
| chr3_1 | exon | 90662675 | 90662679 | 90662675 | ID=Msa0386830-mRNA-1:exon:25086;Parent=Msa0386830-mRNA-1 |
| chr3_1 | exon | 90666783 | 90666805 | 90666783 | ID=Msa0386830-mRNA-1:exon:25087;Parent=Msa0386830-mRNA-1 |
| chr3_1 | exon | 90667707 | 90668287 | 90667707 | ID=Msa0386830-mRNA-1:exon:25088;Parent=Msa0386830-mRNA-1 |
| chr3_1 | CDS | 90662675 | 90662679 | 90662675 | ID=Msa0386830-mRNA-1:cds;Parent=Msa0386830-mRNA-1 |
| chr3_1 | CDS | 90666783 | 90666805 | 90666783 | ID=Msa0386830-mRNA-1:cds;Parent=Msa0386830-mRNA-1 |
| chr3_1 | CDS | 90667707 | 90668287 | 90667707 | ID=Msa0386830-mRNA-1:cds;Parent=Msa0386830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
