AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1457770


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1457770 MtrunA17_Chr4g0035391 77.280 647 112 7 1 643 1 616 0.0 1008
Msa1457770 MtrunA17_Chr3g0144911 98.807 419 5 0 1 419 1 419 0.0 867
Msa1457770 MtrunA17_Chr1g0155521 65.741 648 188 11 1 642 1 620 0.0 847
Msa1457770 MtrunA17_Chr3g0141821 57.188 626 208 7 18 643 7 572 0.0 660
Msa1457770 MtrunA17_Chr8g0372651 50.416 601 213 11 39 629 17 542 0.0 547
Msa1457770 MtrunA17_Chr3g0144891 52.097 620 225 14 28 643 18 569 0.0 546
Msa1457770 MtrunA17_Chr5g0404711 63.830 376 109 3 41 416 10 358 6.63e-175 506
Msa1457770 MtrunA17_Chr5g0404711 40.196 102 57 2 542 643 378 475 4.64e-14 75.1
Msa1457770 MtrunA17_Chr3g0080051 42.373 649 321 13 13 642 4 618 7.41e-159 470
Msa1457770 MtrunA17_Chr4g0035361 51.923 520 189 13 110 629 1 459 1.00e-157 462
Msa1457770 MtrunA17_Chr7g0236461 42.434 641 301 14 14 643 4 587 3.69e-157 465
Msa1457770 MtrunA17_Chr4g0035381 59.432 387 83 5 17 395 16 336 6.31e-144 424
Msa1457770 MtrunA17_Chr8g0369291 39.904 624 327 11 31 642 15 602 6.69e-134 405
Msa1457770 MtrunA17_Chr3g0144901 95.025 201 5 1 443 643 1 196 1.67e-133 389
Msa1457770 MtrunA17_Chr5g0399151 49.847 327 159 2 44 370 54 375 1.58e-109 337
Msa1457770 MtrunA17_Chr3g0102691 31.301 246 142 7 88 317 1 235 1.68e-19 90.5
Msa1457770 MtrunA17_Chr4g0076441 25.982 331 204 10 85 393 1 312 3.75e-19 89.4
Msa1457770 MtrunA17_Chr3g0131581 31.163 215 129 6 107 320 66 262 4.20e-18 85.1
Msa1457770 MtrunA17_Chr2g0290661 28.870 239 146 7 93 317 13 241 7.16e-18 85.5
Msa1457770 MtrunA17_Chr8g0385681 31.944 216 128 7 106 320 48 245 2.04e-16 79.7
Msa1457770 MtrunA17_Chr4g0014901 30.180 222 129 9 110 320 271 477 4.31e-16 82.0
Msa1457770 MtrunA17_Chr8g0385291 29.437 231 138 7 110 330 181 396 4.90e-16 81.3
Msa1457770 MtrunA17_Chr4g0004981 27.313 227 140 8 110 326 125 336 3.02e-15 78.6
Msa1457770 MtrunA17_Chr1g0155071 30.986 213 121 9 113 320 48 239 2.54e-14 73.9
Msa1457770 MtrunA17_Chr1g0161441 30.047 213 130 8 111 320 32 228 3.22e-13 70.1
Msa1457770 MtrunA17_Chr3g0131071 28.829 222 133 8 110 320 249 456 2.81e-12 69.7
Msa1457770 MtrunA17_Chr4g0014911 26.549 226 143 6 110 324 139 352 3.76e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1457770 AT2G21520.1 72.403 645 145 6 1 637 1 620 0.0 937
Msa1457770 AT2G21520.2 71.803 649 146 7 1 637 1 624 0.0 927
Msa1457770 AT2G21520.3 71.803 649 146 7 1 637 1 624 0.0 927
Msa1457770 AT4G39170.1 70.968 651 144 8 1 643 1 614 0.0 920
Msa1457770 AT4G39170.2 70.814 651 143 9 1 643 1 612 0.0 912
Msa1457770 AT1G19650.1 56.079 658 224 11 1 643 1 608 0.0 689
Msa1457770 AT1G75370.1 56.947 655 227 15 1 643 1 612 0.0 667
Msa1457770 AT1G75370.2 56.535 658 228 15 1 643 1 615 0.0 664
Msa1457770 AT1G19650.2 55.596 554 187 8 105 643 27 536 0.0 585
Msa1457770 AT2G21540.6 50.082 611 217 13 23 629 11 537 0.0 572
Msa1457770 AT2G21540.2 50.082 611 217 13 23 629 11 537 0.0 572
Msa1457770 AT2G21540.1 50.082 611 217 13 23 629 11 537 0.0 572
Msa1457770 AT2G21540.4 50.082 611 217 13 23 629 11 537 0.0 572
Msa1457770 AT2G21540.3 50.245 611 210 13 23 629 11 531 0.0 571
Msa1457770 AT2G21540.5 50.245 611 210 13 23 629 11 531 0.0 571
Msa1457770 AT4G34580.2 48.455 615 233 9 24 629 3 542 0.0 555
Msa1457770 AT4G34580.1 48.455 615 233 9 24 629 3 542 0.0 555
Msa1457770 AT1G19650.3 65.783 415 134 5 1 415 1 407 0.0 546
Msa1457770 AT4G39180.3 73.214 336 86 3 23 357 11 343 0.0 533
Msa1457770 AT4G39180.1 73.214 336 86 3 23 357 11 343 0.0 533
Msa1457770 AT4G39180.2 73.214 336 86 3 23 357 11 343 0.0 533
Msa1457770 AT4G36490.1 68.889 360 96 4 35 394 8 351 4.84e-178 517
Msa1457770 AT4G36490.1 35.172 145 83 4 490 629 393 531 2.48e-15 79.7
Msa1457770 AT2G18180.2 74.684 316 72 4 37 351 14 322 3.16e-173 504
Msa1457770 AT2G18180.2 55.714 70 31 0 561 630 466 535 2.71e-16 82.8
Msa1457770 AT2G18180.1 74.684 316 72 4 37 351 14 322 6.01e-173 504
Msa1457770 AT2G18180.1 55.714 70 31 0 561 630 466 535 3.38e-16 82.4
Msa1457770 AT2G16380.2 67.781 329 103 2 26 353 5 331 5.55e-167 489
Msa1457770 AT2G16380.1 67.781 329 103 2 26 353 5 331 5.55e-167 489
Msa1457770 AT3G24840.1 44.839 620 264 13 29 643 22 568 5.12e-164 482
Msa1457770 AT3G24840.6 44.839 620 264 13 29 643 22 568 5.12e-164 482
Msa1457770 AT3G24840.4 44.839 620 264 13 29 643 22 568 5.12e-164 482
Msa1457770 AT3G24840.2 44.839 620 264 13 29 643 22 568 5.12e-164 482
Msa1457770 AT3G24840.7 45.000 620 264 13 29 643 22 569 8.90e-164 481
Msa1457770 AT3G24840.3 45.000 620 264 13 29 643 22 569 8.90e-164 481
Msa1457770 AT3G24840.5 45.000 620 264 13 29 643 22 569 8.90e-164 481
Msa1457770 AT1G55690.2 43.214 641 332 13 14 642 5 625 1.65e-153 457
Msa1457770 AT1G55690.4 43.214 641 332 13 14 642 5 625 1.65e-153 457
Msa1457770 AT1G55690.1 43.214 641 332 13 14 642 5 625 1.65e-153 457
Msa1457770 AT1G55690.5 43.214 641 332 13 14 642 5 625 1.65e-153 457
Msa1457770 AT1G55690.3 43.286 633 329 12 14 636 5 617 1.82e-152 454
Msa1457770 AT2G18180.4 80.417 240 47 0 112 351 12 251 7.51e-150 442
Msa1457770 AT2G18180.4 55.714 70 31 0 561 630 395 464 1.57e-16 83.2
Msa1457770 AT2G18180.3 80.083 241 48 0 111 351 11 251 1.24e-149 442
Msa1457770 AT2G18180.3 55.714 70 31 0 561 630 395 464 1.84e-16 83.2
Msa1457770 AT2G18180.5 81.250 224 42 0 128 351 1 224 8.41e-141 418
Msa1457770 AT2G18180.5 55.714 70 31 0 561 630 368 437 1.58e-16 83.2
Msa1457770 AT5G56160.2 55.942 345 148 3 17 359 2 344 8.15e-135 404
Msa1457770 AT5G56160.1 55.780 346 149 3 16 359 1 344 5.78e-134 405
Msa1457770 AT5G56160.3 55.780 346 149 3 16 359 1 344 5.78e-134 405
Msa1457770 AT2G16380.3 75.664 226 55 0 128 353 1 226 1.70e-130 391
Msa1457770 AT5G47510.2 50.775 258 127 0 86 343 27 284 1.39e-99 308
Msa1457770 AT5G47510.1 50.775 258 127 0 86 343 26 283 4.57e-99 308
Msa1457770 AT5G47510.4 50.775 258 127 0 86 343 27 284 5.25e-99 308
Msa1457770 AT5G47510.3 52.655 226 107 0 118 343 2 227 6.20e-91 285
Msa1457770 AT5G47730.4 27.984 243 156 6 86 317 7 241 2.33e-19 90.5
Msa1457770 AT5G47730.1 27.984 243 156 6 86 317 7 241 2.33e-19 90.5
Msa1457770 AT1G55840.1 29.098 244 145 6 97 328 19 246 5.51e-18 85.9
Msa1457770 AT1G55840.2 30.047 213 133 4 111 317 12 214 2.99e-17 83.2
Msa1457770 AT1G01630.1 31.604 212 126 7 110 320 52 245 1.05e-16 80.9
Msa1457770 AT1G72160.1 24.336 226 148 8 110 324 166 379 2.18e-15 79.7
Msa1457770 AT5G47730.2 27.604 192 131 3 128 317 1 186 5.02e-14 73.6
Msa1457770 AT5G47730.3 27.604 192 131 3 128 317 1 186 5.02e-14 73.6
Msa1457770 AT4G09160.2 26.106 226 144 6 110 324 316 529 5.17e-12 69.3
Msa1457770 AT4G09160.3 26.106 226 144 6 110 324 316 529 5.35e-12 69.3
Msa1457770 AT4G09160.1 26.106 226 144 6 110 324 341 554 6.66e-12 69.3
Msa1457770 AT3G51670.1 25.000 236 149 9 110 337 84 299 1.33e-11 67.4

Find 185 sgRNAs with CRISPR-Local

Find 339 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCCAATCAAATTCAAATT+AGG 0.085421 tig0039109:-5029 Msa1457770:five_prime_UTR
CATATGACCTTCAATATTTC+AGG 0.179559 tig0039109:+3105 Msa1457770:intergenic
TTGTTGCAGTCCACAATATT+TGG 0.248808 tig0039109:-2537 Msa1457770:intron
GAATAGCTCTTCATTGCTTT+TGG 0.251350 tig0039109:+2722 Msa1457770:intergenic
CTCGCAACTTGGCTTCTTCC+TGG 0.254873 tig0039109:+1090 Msa1457770:intergenic
CAGAGGTCTCACACCTTAAA+AGG 0.255250 tig0039109:-2294 Msa1457770:CDS
TTCCAATCAAATTCAAATTA+GGG 0.256826 tig0039109:-5028 Msa1457770:five_prime_UTR
TTGTAGGAGGGAGTTGAATT+AGG 0.272628 tig0039109:+4984 Msa1457770:intergenic
ACCCGAGCTTTAACTCCTTC+TGG 0.274076 tig0039109:+1756 Msa1457770:intergenic
GGAAACATTACTTAGGTTCT+TGG 0.276758 tig0039109:-3343 Msa1457770:intron
TGTGGATCCCACTTTAGTTT+TGG 0.299012 tig0039109:+5241 Msa1457770:intergenic
AACCCTAATTTGAATTTGAT+TGG 0.310023 tig0039109:+5026 Msa1457770:intergenic
TTAAAAGGTTGGTGGCTTCT+TGG 0.311173 tig0039109:-2279 Msa1457770:intron
AGCTAGCAAAGATGCTATTC+TGG 0.321042 tig0039109:+780 Msa1457770:intergenic
ACTCTCACCGAACAGGTAAA+AGG 0.336501 tig0039109:-2797 Msa1457770:intron
AGAGTTAATTGCTACTAAAA+AGG 0.344700 tig0039109:-1412 Msa1457770:intron
ATGGCCCTTTATCAGATCTA+AGG 0.345070 tig0039109:+3136 Msa1457770:intergenic
CTGACTTTGTAAAATTCTTA+AGG 0.347694 tig0039109:+3772 Msa1457770:intergenic
GATACATCTACTGCCGAATC+AGG 0.348018 tig0039109:-2770 Msa1457770:CDS
AAGGAGTTAAAGCTCGGGTT+TGG 0.349644 tig0039109:-1752 Msa1457770:CDS
CAGGTACCTCCGAGAAATTC+CGG 0.352903 tig0039109:+3183 Msa1457770:intergenic
GGAAGTTATGCTAACATGTC+TGG 0.353390 tig0039109:-2384 Msa1457770:CDS
CACGAACAGGGGTCAGTCTA+AGG 0.356073 tig0039109:+2696 Msa1457770:intergenic
CCAAGTCTTTCAATATAAAC+AGG 0.360352 tig0039109:+4063 Msa1457770:intergenic
CTCTTCCATTCAGCATCAAC+AGG 0.363635 tig0039109:+2330 Msa1457770:intergenic
GTCTGTGCTTGGCTTGTTGA+AGG 0.374114 tig0039109:+1582 Msa1457770:intergenic
CACTTAATGTAGTGAGTTGC+CGG 0.379771 tig0039109:-3202 Msa1457770:intron
TGGTAATCATCAAAAGCTTC+AGG 0.385856 tig0039109:+4575 Msa1457770:intergenic
ACTGATGCAGGTTACAACTA+TGG 0.387260 tig0039109:-4022 Msa1457770:CDS
TGTTGAATGCTGCGGTCTGC+CGG 0.390645 tig0039109:-1452 Msa1457770:CDS
TAGTATCATACTATCATCAT+AGG 0.390835 tig0039109:+5296 Msa1457770:intergenic
CTACAATGGAGAAGGGAGTT+TGG 0.395043 tig0039109:-4387 Msa1457770:CDS
GGATGCCTTAGATCTGATAA+AGG 0.399200 tig0039109:-3141 Msa1457770:CDS
CGGCATTTATGATAAACATT+TGG 0.399702 tig0039109:+3516 Msa1457770:intergenic
TTGCCTCATTCTTCATTCCC+TGG 0.401093 tig0039109:+5372 Msa1457770:intergenic
CCTGTTTATATTGAAAGACT+TGG 0.404931 tig0039109:-4063 Msa1457770:CDS
GATGAAAGGAGAACCAGAAT+TGG 0.406535 tig0039109:-4779 Msa1457770:CDS
AGACTTACTTCCTCACGAAC+AGG 0.409545 tig0039109:+2683 Msa1457770:intergenic
TTCAGCTTCTGACCCTGATT+CGG 0.410951 tig0039109:+2757 Msa1457770:intergenic
GGTCTGCCGGGTGGATGCTT+TGG 0.413892 tig0039109:-1439 Msa1457770:CDS
CCCTCCTTGCTGAAAAGGTT+AGG 0.416929 tig0039109:-1543 Msa1457770:CDS
TCTTTCCCTCCTTGCTGAAA+AGG 0.421998 tig0039109:-1548 Msa1457770:CDS
CAACTCCCTCCTACAATGTC+TGG 0.427157 tig0039109:-4977 Msa1457770:exon
ATGATTACCATATGATGTTA+AGG 0.431353 tig0039109:-4562 Msa1457770:intron
TTAACTTACGTGGATCTTTG+AGG 0.437733 tig0039109:+3436 Msa1457770:intergenic
TTCTTGCTTATCTTGTCCAC+TGG 0.437905 tig0039109:-672 Msa1457770:three_prime_UTR
TGATATTGCAGGAAGTTTGT+TGG 0.441337 tig0039109:+1665 Msa1457770:intergenic
AGCTCGGGTTTGGGTAGCCC+TGG 0.441503 tig0039109:-1742 Msa1457770:CDS
ATGAGCACCTTAACATCATA+TGG 0.441586 tig0039109:+4555 Msa1457770:intergenic
AGTGAGTTGCCGGAATTTCT+CGG 0.443277 tig0039109:-3192 Msa1457770:CDS
AGGAGTTAAAGCTCGGGTTT+GGG 0.448011 tig0039109:-1751 Msa1457770:CDS
GTAACCTGCATCAGTTTGTT+CGG 0.450895 tig0039109:+4030 Msa1457770:intergenic
TTGAGAATTCAGAAGATGAA+AGG 0.452181 tig0039109:-4793 Msa1457770:CDS
CTCCACAACAGTCTAAATCC+AGG 0.459305 tig0039109:+3491 Msa1457770:intergenic
TTTATCATAAATGCCGGCCC+TGG 0.461240 tig0039109:-3509 Msa1457770:CDS
GTTAGGTGAGCTTGAAGAGA+AGG 0.464549 tig0039109:-1526 Msa1457770:CDS
TCATCATTAGATGATATTGC+AGG 0.467092 tig0039109:+1654 Msa1457770:intergenic
TGTTAGCTCTGTTTCTATTG+AGG 0.470702 tig0039109:-4669 Msa1457770:CDS
TCTCAATGGCGAACCACGGC+GGG 0.475604 tig0039109:-2998 Msa1457770:CDS
CTAAAGACAGAGAAAGAGAA+AGG 0.476100 tig0039109:+5160 Msa1457770:intergenic
TTTACCCTTTCATCAGCTGC+AGG 0.478475 tig0039109:-5204 Msa1457770:five_prime_UTR
TCTAAGAGAATGCTTAAACT+TGG 0.481804 tig0039109:+4724 Msa1457770:intergenic
CACTGCCTGCAGCTGATGAA+AGG 0.483068 tig0039109:+5199 Msa1457770:intergenic
ACACTATACCAAAACTAAAG+TGG 0.485836 tig0039109:-5249 Msa1457770:five_prime_UTR
AAGGTCTAGCGAAACGATCA+AGG 0.486798 tig0039109:+4951 Msa1457770:intergenic
ATGTTTGTTGTCTCGAGAGT+TGG 0.489587 tig0039109:+1615 Msa1457770:intergenic
AACAATTCCGCCTTCTCGTA+AGG 0.494601 tig0039109:+1471 Msa1457770:intergenic
TTTGTAGATTTCTGAAAGCA+AGG 0.495319 tig0039109:-4452 Msa1457770:intron
ATGCCAACTTACTCGCAACT+TGG 0.496679 tig0039109:+1079 Msa1457770:intergenic
CACAATATCTCCAAATATTG+TGG 0.497971 tig0039109:+2527 Msa1457770:intergenic
ACCACAATCTTAGATGTTCA+AGG 0.499904 tig0039109:-3901 Msa1457770:CDS
ATTTGTCAGGCTAAGATAGC+AGG 0.500992 tig0039109:-2411 Msa1457770:intron
TGGTTGAAAAGCTTAGTTGT+TGG 0.501819 tig0039109:-701 Msa1457770:three_prime_UTR
AGCAAATAACATCAGGAAGA+AGG 0.501851 tig0039109:+1716 Msa1457770:intergenic
ACATCAGGAAGAAGGCAGCC+AGG 0.503548 tig0039109:+1724 Msa1457770:intergenic
TCAACAGGTTTGTCTACCAT+TGG 0.504730 tig0039109:+2345 Msa1457770:intergenic
TTCTCGTAAGGCATTTCAGA+TGG 0.509154 tig0039109:+1483 Msa1457770:intergenic
CTCCAGAAGGAGTTAAAGCT+CGG 0.512546 tig0039109:-1758 Msa1457770:CDS
GCAACCGCTGAATGAGTTCA+CGG 0.514132 tig0039109:+3748 Msa1457770:intergenic
GGAAAAGAGCAAATAACATC+AGG 0.514810 tig0039109:+1709 Msa1457770:intergenic
TATTACCCACATGGCCATCA+TGG 0.515918 tig0039109:-4105 Msa1457770:CDS
TAAAGACAGAGAAAGAGAAA+GGG 0.520963 tig0039109:+5161 Msa1457770:intergenic
TAAAAGAGGAGGAGCAGTTG+TGG 0.521848 tig0039109:+5223 Msa1457770:intergenic
AAAGAAAAGAAAAGAAGGAA+TGG 0.525650 tig0039109:+5120 Msa1457770:intergenic
TACTTGAAGTAATTGATGCC+AGG 0.527444 tig0039109:-3300 Msa1457770:intron
CAGGAAGTTTGTTGGTCATG+CGG 0.529886 tig0039109:+1673 Msa1457770:intergenic
ACAAACCTGTTGATGCTGAA+TGG 0.529895 tig0039109:-2335 Msa1457770:CDS
AGTGGTAGGAGAAAGAGTGA+TGG 0.530434 tig0039109:-4695 Msa1457770:CDS
TCAAGGGGTCCAGACATTGT+AGG 0.532137 tig0039109:+4968 Msa1457770:intergenic
CACTATACCAAAACTAAAGT+GGG 0.534684 tig0039109:-5248 Msa1457770:five_prime_UTR
CTTCCTTGTCTACACCATGA+TGG 0.535434 tig0039109:+4091 Msa1457770:intergenic
AAGTACAACTGTGATCGTGC+TGG 0.536156 tig0039109:+903 Msa1457770:intergenic
AGCTGATGAAAGGGTAAAAG+AGG 0.537928 tig0039109:+5209 Msa1457770:intergenic
GTTGAATGCTGCGGTCTGCC+GGG 0.538487 tig0039109:-1451 Msa1457770:CDS
TGAGGATGTTAGAGATGTTG+AGG 0.541292 tig0039109:-4651 Msa1457770:CDS
ACTGCCTGCAGCTGATGAAA+GGG 0.541563 tig0039109:+5200 Msa1457770:intergenic
CTCTCTACGAAGCGTTAATG+AGG 0.542826 tig0039109:-1142 Msa1457770:CDS
TCATGCGGCAAGCAACTTGA+CGG 0.543728 tig0039109:+1688 Msa1457770:intergenic
TCCCTCGTCTGCACAAGAGC+AGG 0.544804 tig0039109:+3164 Msa1457770:intergenic
CTGACATGCTACAATGGAGA+AGG 0.546074 tig0039109:-4395 Msa1457770:CDS
TGGTGCTGACACCATTATGC+AGG 0.547549 tig0039109:-4367 Msa1457770:intron
CTCTTAGAAAGAAGAGTGGT+AGG 0.547857 tig0039109:-4709 Msa1457770:CDS
GATGCCTTAGATCTGATAAA+GGG 0.549117 tig0039109:-3140 Msa1457770:CDS
ATCTGAAATGCCTTACGAGA+AGG 0.553009 tig0039109:-1481 Msa1457770:CDS
CAGGCTAAGATAGCAGGAAA+GGG 0.556007 tig0039109:-2405 Msa1457770:CDS
CTCACACCTTAAAAGGTTGG+TGG 0.556112 tig0039109:-2287 Msa1457770:CDS
TGATCCGAACAAACTGATGC+AGG 0.556119 tig0039109:-4034 Msa1457770:CDS
GAAGTTATGCTAACATGTCT+GGG 0.556151 tig0039109:-2383 Msa1457770:CDS
GCCCTGGATTTAGACTGTTG+TGG 0.562110 tig0039109:-3493 Msa1457770:CDS
TCAGGCTAAGATAGCAGGAA+AGG 0.562842 tig0039109:-2406 Msa1457770:intron
TACCTGCTCTTGTGCAGACG+AGG 0.562861 tig0039109:-3166 Msa1457770:CDS
AGTATCATACTATCATCATA+GGG 0.563052 tig0039109:+5297 Msa1457770:intergenic
AGGATCAAGAAAAGACTTGA+CGG 0.565906 tig0039109:+3466 Msa1457770:intergenic
CATCAGGAAGAAGGCAGCCA+GGG 0.566468 tig0039109:+1725 Msa1457770:intergenic
CAAATGTTTATCATAAATGC+CGG 0.567049 tig0039109:-3515 Msa1457770:CDS
AGTACAACTGTGATCGTGCT+GGG 0.568944 tig0039109:+904 Msa1457770:intergenic
CAGTGGATAGAGTTACAACA+TGG 0.568948 tig0039109:+860 Msa1457770:intergenic
GTAAAGGTTCTCAACAGTGA+AGG 0.571005 tig0039109:-2964 Msa1457770:CDS
GCTTGCTTACATAGACCGCC+AGG 0.573707 tig0039109:-1108 Msa1457770:CDS
TCCAGAAGGAGTTAAAGCTC+GGG 0.574655 tig0039109:-1757 Msa1457770:CDS
GGTTCTCAACAGTGAAGGGA+AGG 0.575465 tig0039109:-2959 Msa1457770:CDS
GACTTACTTCCTCACGAACA+GGG 0.576560 tig0039109:+2684 Msa1457770:intergenic
TAAAGGTTCTCAACAGTGAA+GGG 0.579543 tig0039109:-2963 Msa1457770:CDS
CAACAGTCTAAATCCAGGGC+CGG 0.582978 tig0039109:+3496 Msa1457770:intergenic
CTGTTGATGCTGAATGGAAG+AGG 0.584003 tig0039109:-2329 Msa1457770:CDS
AGGTCTAGCGAAACGATCAA+GGG 0.584638 tig0039109:+4952 Msa1457770:intergenic
CTTGCACTATTGCTGCAAAG+AGG 0.584915 tig0039109:-3939 Msa1457770:CDS
AACATACAAAACACTCCAGA+AGG 0.585254 tig0039109:-1771 Msa1457770:CDS
CAACCGCTGAATGAGTTCAC+GGG 0.585454 tig0039109:+3749 Msa1457770:intergenic
TTAGATCTGATAAAGGGCCA+TGG 0.586575 tig0039109:-3134 Msa1457770:CDS
ACTCATTCAGCGGTTGCAGA+AGG 0.587086 tig0039109:-3742 Msa1457770:CDS
AGAGTTACCATTGGGTATCG+TGG 0.589722 tig0039109:+2919 Msa1457770:intergenic
AGGGGTCCAGACATTGTAGG+AGG 0.593227 tig0039109:+4971 Msa1457770:intergenic
GGTCTCACACCTTAAAAGGT+TGG 0.598631 tig0039109:-2290 Msa1457770:CDS
ATACATCTACTGCCGAATCA+GGG 0.600440 tig0039109:-2769 Msa1457770:CDS
GCGGGCAAGACAAGTAGTAA+AGG 0.600575 tig0039109:-2980 Msa1457770:CDS
ACTACTTGTCTTGCCCGCCG+TGG 0.608753 tig0039109:+2985 Msa1457770:intergenic
AACTCTCGAGACAACAAACA+TGG 0.609861 tig0039109:-1613 Msa1457770:CDS
CAGCGGTTGCAGAAGGTCGA+CGG 0.610486 tig0039109:-3735 Msa1457770:CDS
TTTGCAGCAATAGTGCAAGC+AGG 0.612016 tig0039109:+3943 None:intergenic
AAAGACAGAGAAAGAGAAAG+GGG 0.618292 tig0039109:+5162 None:intergenic
TCCTTGAACATCTAAGATTG+TGG 0.621262 tig0039109:+3900 None:intergenic
CCGCCAGGGAATGAAGAATG+AGG 0.622334 tig0039109:-5375 None:intergenic
TGCTCTTGTGCAGACGAGGG+AGG 0.624988 tig0039109:-3162 Msa1457770:CDS
TGTTGCGGAAGAGTAACAAA+GGG 0.626553 tig0039109:+5072 Msa1457770:intergenic
TAGACTGACCCCTGTTCGTG+AGG 0.627244 tig0039109:-2693 Msa1457770:CDS
AGAAAGATGCTCCACAGAGG+AGG 0.627660 tig0039109:-935 Msa1457770:three_prime_UTR
ATGGTGTAGACAAGGAAGGA+AGG 0.628721 tig0039109:-4086 Msa1457770:CDS
AATCTTAGATGTTCAAGGAG+TGG 0.629525 tig0039109:-3896 Msa1457770:intron
TGCGAAGCCACGATACCCAA+TGG 0.631200 tig0039109:-2926 Msa1457770:intron
TTGTTGCGGAAGAGTAACAA+AGG 0.633517 tig0039109:+5071 Msa1457770:intergenic
TGTGGGCTGACATGCTACAA+TGG 0.633693 tig0039109:-4401 Msa1457770:CDS
GGCGGAATTGTTGAATGCTG+CGG 0.635995 tig0039109:-1460 Msa1457770:CDS
CAATATTTGGAGATATTGTG+AGG 0.636519 tig0039109:-2524 Msa1457770:CDS
GGGAGAAACATCCTCCTCTG+TGG 0.636984 tig0039109:+924 Msa1457770:intergenic
TGATGAAAGGGTAAAAGAGG+AGG 0.640882 tig0039109:+5212 Msa1457770:intergenic
TGGCCATCATGGTGTAGACA+AGG 0.641499 tig0039109:-4094 Msa1457770:CDS
TGACATGCTACAATGGAGAA+GGG 0.642619 tig0039109:-4394 Msa1457770:CDS
CATTCTCTTAGAAAGAAGAG+TGG 0.644440 tig0039109:-4713 Msa1457770:CDS
TCCACAACAGTCTAAATCCA+GGG 0.645024 tig0039109:+3492 Msa1457770:intergenic
ATTTCTCAAACTCTTGCACA+TGG 0.647962 tig0039109:+3983 Msa1457770:intergenic
CATCATGGTGTAGACAAGGA+AGG 0.648295 tig0039109:-4090 Msa1457770:CDS
ACCTGCTCTTGTGCAGACGA+GGG 0.649120 tig0039109:-3165 Msa1457770:CDS
GTATGATGAATATGTTCCAA+TGG 0.652365 tig0039109:-2361 Msa1457770:CDS
AACAAGCCAAGCACAGACAG+AGG 0.652528 tig0039109:-1577 Msa1457770:CDS
CTGCTTCCAAAGCATCCACC+CGG 0.654601 tig0039109:+1433 Msa1457770:intergenic
TGAAATGCCTTACGAGAAGG+CGG 0.658641 tig0039109:-1478 Msa1457770:CDS
GGGGTCCAGACATTGTAGGA+GGG 0.661895 tig0039109:+4972 Msa1457770:intergenic
GTACTATGAGTAAAACTAAG+CGG 0.665294 tig0039109:-828 Msa1457770:three_prime_UTR
TCTACACCATGATGGCCATG+TGG 0.666431 tig0039109:+4099 Msa1457770:intergenic
GCAACTTGGCTTCTTCCTGG+CGG 0.667045 tig0039109:+1093 Msa1457770:intergenic
TTCTCAATGGCGAACCACGG+CGG 0.670535 tig0039109:-2999 Msa1457770:CDS
TGGTTCTCAATGGCGAACCA+CGG 0.670544 tig0039109:-3002 Msa1457770:CDS
GAGTTACAACATGGGTACAA+CGG 0.675378 tig0039109:+869 Msa1457770:intergenic
GAATGCTGCGGTCTGCCGGG+TGG 0.679946 tig0039109:-1448 Msa1457770:CDS
ACTTACTTCCTCACGAACAG+GGG 0.681063 tig0039109:+2685 Msa1457770:intergenic
CAGCCCGTGAACTCATTCAG+CGG 0.691924 tig0039109:-3752 Msa1457770:CDS
GGTCTAGCGAAACGATCAAG+GGG 0.694371 tig0039109:+4953 Msa1457770:intergenic
CTACACCATGATGGCCATGT+GGG 0.701290 tig0039109:+4100 Msa1457770:intergenic
AGAGGCAAACATCTCTACAG+AGG 0.704526 tig0039109:-2311 Msa1457770:CDS
GTTGTGAAGTATTACCCACA+TGG 0.705174 tig0039109:-4114 Msa1457770:CDS
AGTGGATAGAGTTACAACAT+GGG 0.742824 tig0039109:+861 Msa1457770:intergenic
GATAGAAAGATGCTCCACAG+AGG 0.748082 tig0039109:-938 Msa1457770:three_prime_UTR
GAGTTGCCGGAATTTCTCGG+AGG 0.755589 tig0039109:-3189 Msa1457770:CDS
CGACGGTGACAATTACCCCG+AGG 0.764728 tig0039109:-3718 Msa1457770:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTGTGTTTAATTATTAT+TGG - tig0039109:1549-1568 Msa1457770:CDS 10.0%
!! ATAAAAAAGAAAAGAAAAGA+AGG + tig0039109:922-941 Msa1457770:intergenic 15.0%
!!! TAAAATGCATATAGAATTTT+GGG - tig0039109:1690-1709 Msa1457770:CDS 15.0%
!!! TTTTTTATGAATCAATTTTC+AGG - tig0039109:2238-2257 Msa1457770:intron 15.0%
!!! TTTTTATGAATCAATTTTCA+GGG - tig0039109:2239-2258 Msa1457770:intron 15.0%
!! AATAAGAAGATTCATTAAAA+GGG + tig0039109:3795-3814 Msa1457770:intergenic 15.0%
!! AAATAAGAAGATTCATTAAA+AGG + tig0039109:3796-3815 Msa1457770:intergenic 15.0%
!!! TATTTTGTTAATTATGACAT+AGG - tig0039109:3869-3888 Msa1457770:intron 15.0%
!! TTCCAATCAAATTCAAATTA+GGG - tig0039109:1006-1025 Msa1457770:intron 20.0%
!!! TTGAATTTGTTCAATTTTTC+AGG - tig0039109:1168-1187 Msa1457770:intron 20.0%
!!! ACTTAAAGCTTTCTTTTTTA+AGG + tig0039109:1283-1302 Msa1457770:intergenic 20.0%
!!! GTAAAATGCATATAGAATTT+TGG - tig0039109:1689-1708 Msa1457770:CDS 20.0%
!! AAAAAACAAAACATTAGGTA+AGG + tig0039109:1866-1885 Msa1457770:intergenic 20.0%
!! TCAATAGAAAAGAAAAATCA+TGG + tig0039109:2772-2791 Msa1457770:intergenic 20.0%
!! TAAATAGCAATTTGTAGAAT+AGG + tig0039109:3380-3399 Msa1457770:intergenic 20.0%
!! ATAATAATAACTAATCTGAC+AGG - tig0039109:3410-3429 Msa1457770:intron 20.0%
!! TTTGCATGTAAATTTCAAAA+AGG - tig0039109:4059-4078 Msa1457770:CDS 20.0%
! AGTATCATACTATCATCATA+GGG + tig0039109:740-759 None:intergenic 25.0%
! TAGTATCATACTATCATCAT+AGG + tig0039109:741-760 None:intergenic 25.0%
! AAAGAAAAGAAAAGAAGGAA+TGG + tig0039109:917-936 Msa1457770:intergenic 25.0%
! CTTCCAATCAAATTCAAATT+AGG - tig0039109:1005-1024 Msa1457770:intron 25.0%
! AACCCTAATTTGAATTTGAT+TGG + tig0039109:1011-1030 Msa1457770:intergenic 25.0%
!!! TTCAATTTTTCAGGTTTTGA+GGG - tig0039109:1177-1196 Msa1457770:intron 25.0%
! ATGATTACCATATGATGTTA+AGG - tig0039109:1472-1491 Msa1457770:CDS 25.0%
! TTTCTGATGGTTAAATAACA+TGG - tig0039109:1736-1755 Msa1457770:CDS 25.0%
!! GAACAAGATATAGACTTTTA+GGG - tig0039109:1758-1777 Msa1457770:CDS 25.0%
!! TATGTTTAGATGGATGATTT+TGG - tig0039109:1781-1800 Msa1457770:CDS 25.0%
! GATGCAAAAAACAAAACATT+AGG + tig0039109:1871-1890 Msa1457770:intergenic 25.0%
!!! AATGTTTTGTTTTTTGCATC+AGG - tig0039109:1871-1890 Msa1457770:intron 25.0%
! AATTGAATGATTTCAAACCT+TGG + tig0039109:2205-2224 Msa1457770:intergenic 25.0%
! CTGACTTTGTAAAATTCTTA+AGG + tig0039109:2265-2284 Msa1457770:intergenic 25.0%
! CAAATGTTTATCATAAATGC+CGG - tig0039109:2519-2538 Msa1457770:CDS 25.0%
!! AATTTAAAACAGCTAGAAGA+TGG + tig0039109:2627-2646 Msa1457770:intergenic 25.0%
!! AATATTTCAGGATTTTTCCA+TGG + tig0039109:2920-2939 Msa1457770:intergenic 25.0%
! GAAAAATCCTGAAATATTGA+AGG - tig0039109:2922-2941 Msa1457770:intron 25.0%
!! TAGAACTATTTTGTCCAATT+GGG + tig0039109:3840-3859 Msa1457770:intergenic 25.0%
! ATTTACATGCAAATGAAATC+CGG + tig0039109:4052-4071 Msa1457770:intergenic 25.0%
!!! CTTTTTTACAAGTCAAAGAA+TGG + tig0039109:4117-4136 Msa1457770:intergenic 25.0%
! AGAGTTAATTGCTACTAAAA+AGG - tig0039109:4622-4641 Msa1457770:CDS 25.0%
! TTAATTGCTACTAAAAAGGT+AGG - tig0039109:4626-4645 Msa1457770:CDS 25.0%
! TTGAAGATAGTAAGAATAAG+AGG + tig0039109:4736-4755 Msa1457770:intergenic 25.0%
! TCCAGAAAAATCAAATGTTA+GGG + tig0039109:4861-4880 Msa1457770:intergenic 25.0%
! ATCCAGAAAAATCAAATGTT+AGG + tig0039109:4862-4881 Msa1457770:intergenic 25.0%
!! TAGCAAAGCTAACATTTTAA+AGG - tig0039109:4989-5008 Msa1457770:five_prime_UTR 25.0%
!!! TTTTTGTTTGTCTTTGTATC+TGG - tig0039109:5299-5318 Msa1457770:five_prime_UTR 25.0%
ACACTATACCAAAACTAAAG+TGG - tig0039109:785-804 Msa1457770:three_prime_UTR 30.0%
CACTATACCAAAACTAAAGT+GGG - tig0039109:786-805 Msa1457770:three_prime_UTR 30.0%
TAAAGACAGAGAAAGAGAAA+GGG + tig0039109:876-895 Msa1457770:intergenic 30.0%
!!! TTTTGTTCTTCTTGTTGTTG+CGG + tig0039109:980-999 Msa1457770:intergenic 30.0%
!! AAATTGAAGAGGTACTTACA+AGG + tig0039109:1105-1124 Msa1457770:intergenic 30.0%
!!! GTTCAATTTTTCAGGTTTTG+AGG - tig0039109:1176-1195 Msa1457770:intron 30.0%
!!! TCAATTTTTCAGGTTTTGAG+GGG - tig0039109:1178-1197 Msa1457770:intron 30.0%
TTGAGAATTCAGAAGATGAA+AGG - tig0039109:1241-1260 Msa1457770:intron 30.0%
!!! CTTTTTTAAGGATCCAATTC+TGG + tig0039109:1271-1290 Msa1457770:intergenic 30.0%
TCTAAGAGAATGCTTAAACT+TGG + tig0039109:1313-1332 Msa1457770:intergenic 30.0%
! TTTGTAGATTTCTGAAAGCA+AGG - tig0039109:1582-1601 Msa1457770:CDS 30.0%
TTGAAAAAGCAAAGCATATG+TGG - tig0039109:1615-1634 Msa1457770:CDS 30.0%
TGAAAAAGCAAAGCATATGT+GGG - tig0039109:1616-1635 Msa1457770:CDS 30.0%
! TATGCATTTTACCTGCATAA+TGG + tig0039109:1681-1700 Msa1457770:intergenic 30.0%
! GGAACAAGATATAGACTTTT+AGG - tig0039109:1757-1776 Msa1457770:CDS 30.0%
!!! ACTTTTAGGGTATGTTTAGA+TGG - tig0039109:1771-1790 Msa1457770:CDS 30.0%
! TTTAGATGGATGATTTTGGA+GGG - tig0039109:1785-1804 Msa1457770:CDS 30.0%
TAAGGCAATCAATTACTTCA+GGG + tig0039109:1848-1867 Msa1457770:intergenic 30.0%
CCAAGTCTTTCAATATAAAC+AGG + tig0039109:1974-1993 Msa1457770:intergenic 30.0%
CCTGTTTATATTGAAAGACT+TGG - tig0039109:1971-1990 Msa1457770:intron 30.0%
! AGTGTGATATAACTAGGTTT+TGG - tig0039109:2430-2449 Msa1457770:intron 30.0%
AAAAACAGTAATCACACTGT+GGG + tig0039109:2475-2494 Msa1457770:intergenic 30.0%
AAAAAACAGTAATCACACTG+TGG + tig0039109:2476-2495 Msa1457770:intergenic 30.0%
CGGCATTTATGATAAACATT+TGG + tig0039109:2521-2540 Msa1457770:intergenic 30.0%
CATATGACCTTCAATATTTC+AGG + tig0039109:2932-2951 Msa1457770:intergenic 30.0%
!! GTGTTTACACTTTTTGTAGA+TGG - tig0039109:3012-3031 Msa1457770:intron 30.0%
! TTTTTGTAGATGGTTCTCAA+TGG - tig0039109:3022-3041 Msa1457770:intron 30.0%
! AAATATGTGAAGCACCAAAT+TGG + tig0039109:3175-3194 Msa1457770:intergenic 30.0%
ACATAGTGAAAAAAAGACCT+TGG - tig0039109:3467-3486 Msa1457770:CDS 30.0%
CACAATATCTCCAAATATTG+TGG + tig0039109:3510-3529 Msa1457770:intergenic 30.0%
CAATATTTGGAGATATTGTG+AGG - tig0039109:3510-3529 Msa1457770:CDS 30.0%
AAAGAGAAAATTCTCTGAAC+AGG + tig0039109:3568-3587 Msa1457770:intergenic 30.0%
! TTCACATTCTGTTATTTGTC+AGG - tig0039109:3610-3629 Msa1457770:intron 30.0%
GTATGATGAATATGTTCCAA+TGG - tig0039109:3673-3692 Msa1457770:intron 30.0%
TCACTAAAATTTCACCCAAT+TGG - tig0039109:3823-3842 Msa1457770:intron 30.0%
! GTAGAACTATTTTGTCCAAT+TGG + tig0039109:3841-3860 Msa1457770:intergenic 30.0%
ATGCAAAATTGAGGTTGTAA+TGG + tig0039109:3933-3952 Msa1457770:intergenic 30.0%
! ATATTGTGCTATAGCCTTTT+TGG - tig0039109:3977-3996 Msa1457770:CDS 30.0%
! TATTGTGCTATAGCCTTTTT+GGG - tig0039109:3978-3997 Msa1457770:CDS 30.0%
TGGATCATTCATATAGTATC+CGG - tig0039109:4030-4049 Msa1457770:CDS 30.0%
! TTTCAAAAAGGCTTTTGATG+AGG - tig0039109:4071-4090 Msa1457770:CDS 30.0%
! TTCAAAAAGGCTTTTGATGA+GGG - tig0039109:4072-4091 Msa1457770:CDS 30.0%
! AAAAAAGAGTTCGAGCTTTT+AGG - tig0039109:4130-4149 Msa1457770:CDS 30.0%
TTCTCCAGCAAAAGTTTAAT+CGG - tig0039109:4210-4229 Msa1457770:intron 30.0%
! AAATCCGATTAAACTTTTGC+TGG + tig0039109:4217-4236 Msa1457770:intergenic 30.0%
TTTAATCGGATTTCCAATAC+AGG - tig0039109:4224-4243 Msa1457770:intron 30.0%
TCATCATTAGATGATATTGC+AGG + tig0039109:4383-4402 Msa1457770:intergenic 30.0%
! ATCAGAAAAAGAAGTTTTGC+TGG - tig0039109:5059-5078 Msa1457770:five_prime_UTR 30.0%
GTACTATGAGTAAAACTAAG+CGG - tig0039109:5206-5225 Msa1457770:five_prime_UTR 30.0%
AAAGACAGAGAAAGAGAAAG+GGG + tig0039109:875-894 Msa1457770:intergenic 35.0%
CTAAAGACAGAGAAAGAGAA+AGG + tig0039109:877-896 Msa1457770:intergenic 35.0%
GCGAGAATTGAAAATTGAAG+AGG + tig0039109:1116-1135 Msa1457770:intergenic 35.0%
CATTCTCTTAGAAAGAAGAG+TGG - tig0039109:1321-1340 Msa1457770:intron 35.0%
!! TGTTAGCTCTGTTTCTATTG+AGG - tig0039109:1365-1384 Msa1457770:intron 35.0%
! TTTTCGTCAGTCTTTGATCA+TGG - tig0039109:1425-1444 Msa1457770:CDS 35.0%
TGGTAATCATCAAAAGCTTC+AGG + tig0039109:1462-1481 Msa1457770:intergenic 35.0%
ATGAGCACCTTAACATCATA+TGG + tig0039109:1482-1501 Msa1457770:intergenic 35.0%
!!! TTTGGGCTTTAGTTTTCGTT+TGG - tig0039109:1707-1726 Msa1457770:CDS 35.0%
! CGTTTGGTTTATGTTTCTGA+TGG - tig0039109:1723-1742 Msa1457770:CDS 35.0%
! GTTTAGATGGATGATTTTGG+AGG - tig0039109:1784-1803 Msa1457770:CDS 35.0%
!! TTAGATGGATGATTTTGGAG+GGG - tig0039109:1786-1805 Msa1457770:CDS 35.0%
GTAAGGCAATCAATTACTTC+AGG + tig0039109:1849-1868 Msa1457770:intergenic 35.0%
ATTTCTCAAACTCTTGCACA+TGG + tig0039109:2054-2073 Msa1457770:intergenic 35.0%
ACCACAATCTTAGATGTTCA+AGG - tig0039109:2133-2152 Msa1457770:intron 35.0%
! TCCTTGAACATCTAAGATTG+TGG + tig0039109:2137-2156 Msa1457770:intergenic 35.0%
AATCTTAGATGTTCAAGGAG+TGG - tig0039109:2138-2157 Msa1457770:intron 35.0%
! TTTTTGAACGCTACGTAACT+AGG - tig0039109:2377-2396 Msa1457770:CDS 35.0%
ACCTAGTTATATCACACTGT+GGG + tig0039109:2428-2447 Msa1457770:intergenic 35.0%
AACCTAGTTATATCACACTG+TGG + tig0039109:2429-2448 Msa1457770:intergenic 35.0%
AGGATCAAGAAAAGACTTGA+CGG + tig0039109:2571-2590 Msa1457770:intergenic 35.0%
!!! TGGATCTTTGAGGTTGTTTT+AGG + tig0039109:2591-2610 Msa1457770:intergenic 35.0%
TTAACTTACGTGGATCTTTG+AGG + tig0039109:2601-2620 Msa1457770:intergenic 35.0%
! AAGATGGCATTTAACTTACG+TGG + tig0039109:2611-2630 Msa1457770:intergenic 35.0%
TAATGTTTCCAACCAAGCAT+CGG + tig0039109:2681-2700 Msa1457770:intergenic 35.0%
CTTGGTTGGAAACATTACTT+AGG - tig0039109:2684-2703 Msa1457770:intron 35.0%
GGAAACATTACTTAGGTTCT+TGG - tig0039109:2691-2710 Msa1457770:CDS 35.0%
TACTTGAAGTAATTGATGCC+AGG - tig0039109:2734-2753 Msa1457770:CDS 35.0%
AATTGATGCCAGGTACATTA+TGG - tig0039109:2744-2763 Msa1457770:CDS 35.0%
GATGCCTTAGATCTGATAAA+GGG - tig0039109:2894-2913 Msa1457770:intron 35.0%
TGAAGGTCATATGCTATTCT+TGG - tig0039109:2939-2958 Msa1457770:CDS 35.0%
TAAAGGTTCTCAACAGTGAA+GGG - tig0039109:3071-3090 Msa1457770:intron 35.0%
TGATTGTTGCCTTAATCAAG+TGG - tig0039109:3147-3166 Msa1457770:CDS 35.0%
! AAATTGGCTCCACTTGATTA+AGG + tig0039109:3159-3178 Msa1457770:intergenic 35.0%
TTAATCAAGTGGAGCCAATT+TGG - tig0039109:3158-3177 Msa1457770:CDS 35.0%
! GCTTCACATATTTTTCTCAG+TGG - tig0039109:3182-3201 Msa1457770:CDS 35.0%
! GAATAGCTCTTCATTGCTTT+TGG + tig0039109:3315-3334 Msa1457770:intergenic 35.0%
TTGTTGCAGTCCACAATATT+TGG - tig0039109:3497-3516 Msa1457770:CDS 35.0%
GAAGTTATGCTAACATGTCT+GGG - tig0039109:3651-3670 Msa1457770:intron 35.0%
AAATTGAGGTTGTAATGGTG+TGG + tig0039109:3928-3947 Msa1457770:intergenic 35.0%
! ATTGTGCTATAGCCTTTTTG+GGG - tig0039109:3979-3998 Msa1457770:CDS 35.0%
! TCAAAAAGGCTTTTGATGAG+GGG - tig0039109:4073-4092 Msa1457770:CDS 35.0%
! GTGTTTTGTATGTTAGGAAG+AGG + tig0039109:4257-4276 Msa1457770:intergenic 35.0%
!! TCTGGAGTGTTTTGTATGTT+AGG + tig0039109:4263-4282 Msa1457770:intergenic 35.0%
AACATACAAAACACTCCAGA+AGG - tig0039109:4263-4282 Msa1457770:intron 35.0%
AGCAAATAACATCAGGAAGA+AGG + tig0039109:4321-4340 Msa1457770:intergenic 35.0%
GGAAAAGAGCAAATAACATC+AGG + tig0039109:4328-4347 Msa1457770:intergenic 35.0%
TGATATTGCAGGAAGTTTGT+TGG + tig0039109:4372-4391 Msa1457770:intergenic 35.0%
ACATCAAGAAAGCGAAGTAA+TGG - tig0039109:4667-4686 Msa1457770:CDS 35.0%
!! CCTAGATTTGTTACCAAAGA+CGG - tig0039109:4834-4853 Msa1457770:CDS 35.0%
!! CTAGATTTGTTACCAAAGAC+GGG - tig0039109:4835-4854 Msa1457770:CDS 35.0%
!! GCCCTAACATTTGATTTTTC+TGG - tig0039109:4857-4876 Msa1457770:intron 35.0%
! GATTTTTCTGGATTGTGCAT+AGG - tig0039109:4869-4888 Msa1457770:intron 35.0%
AGTGGATAGAGTTACAACAT+GGG + tig0039109:5176-5195 Msa1457770:intergenic 35.0%
CATAGTACACTGAAAAACAG+TGG + tig0039109:5194-5213 Msa1457770:intergenic 35.0%
!!! TGTATCTGGTTTGTTTTCCT+TGG - tig0039109:5313-5332 Msa1457770:five_prime_UTR 35.0%
! ACAACTAAGCTTTTCAACCA+AGG + tig0039109:5333-5352 Msa1457770:intergenic 35.0%
TGGTTGAAAAGCTTAGTTGT+TGG - tig0039109:5333-5352 Msa1457770:five_prime_UTR 35.0%
!! TGTGGATCCCACTTTAGTTT+TGG + tig0039109:796-815 Msa1457770:intergenic 40.0%
TGATGAAAGGGTAAAAGAGG+AGG + tig0039109:825-844 Msa1457770:intergenic 40.0%
AGCTGATGAAAGGGTAAAAG+AGG + tig0039109:828-847 Msa1457770:intergenic 40.0%
TGTTGCGGAAGAGTAACAAA+GGG + tig0039109:965-984 Msa1457770:intergenic 40.0%
TTGTTGCGGAAGAGTAACAA+AGG + tig0039109:966-985 Msa1457770:intergenic 40.0%
TTGTAGGAGGGAGTTGAATT+AGG + tig0039109:1053-1072 Msa1457770:intergenic 40.0%
GATGAAAGGAGAACCAGAAT+TGG - tig0039109:1255-1274 Msa1457770:intron 40.0%
CTCTTAGAAAGAAGAGTGGT+AGG - tig0039109:1325-1344 Msa1457770:intron 40.0%
TGAGGATGTTAGAGATGTTG+AGG - tig0039109:1383-1402 Msa1457770:intron 40.0%
TGACATGCTACAATGGAGAA+GGG - tig0039109:1640-1659 Msa1457770:CDS 40.0%
CAAATCCAGGGATTTGGAAA+GGG + tig0039109:1819-1838 Msa1457770:intergenic 40.0%
TCAAATCCAGGGATTTGGAA+AGG + tig0039109:1820-1839 Msa1457770:intergenic 40.0%
TATGCTCAAATCCAGGGATT+TGG + tig0039109:1825-1844 Msa1457770:intergenic 40.0%
!!! GCATCAGGATTTTGAGTTCA+AGG - tig0039109:1886-1905 Msa1457770:intron 40.0%
! GTTGTGAAGTATTACCCACA+TGG - tig0039109:1920-1939 Msa1457770:intron 40.0%
! GTAACCTGCATCAGTTTGTT+CGG + tig0039109:2007-2026 Msa1457770:intergenic 40.0%
ACTGATGCAGGTTACAACTA+TGG - tig0039109:2012-2031 Msa1457770:intron 40.0%
ACTGTGGGAATAGTAACAGT+TGG + tig0039109:2413-2432 Msa1457770:intergenic 40.0%
TCCCACAGTGTGATATAACT+AGG - tig0039109:2424-2443 Msa1457770:intron 40.0%
ACTGTGGGAATAGTAACAGT+TGG + tig0039109:2413-2432 Msa1457770:intergenic 40.0%
TCCACAACAGTCTAAATCCA+GGG + tig0039109:2545-2564 Msa1457770:intergenic 40.0%
AATGTTTCCAACCAAGCATC+GGG + tig0039109:2680-2699 Msa1457770:intergenic 40.0%
AGTGCGCAATGTGTTAAGTT+AGG + tig0039109:2816-2835 Msa1457770:intergenic 40.0%
CACTTAATGTAGTGAGTTGC+CGG - tig0039109:2832-2851 Msa1457770:intron 40.0%
GGATGCCTTAGATCTGATAA+AGG - tig0039109:2893-2912 Msa1457770:intron 40.0%
ATGGCCCTTTATCAGATCTA+AGG + tig0039109:2901-2920 Msa1457770:intergenic 40.0%
TTAGATCTGATAAAGGGCCA+TGG - tig0039109:2900-2919 Msa1457770:intron 40.0%
! ATACCCGTCTGACTTGTAAT+AGG - tig0039109:2976-2995 Msa1457770:CDS 40.0%
TCAGCCTATTACAAGTCAGA+CGG + tig0039109:2983-3002 Msa1457770:intergenic 40.0%
GTAAAGGTTCTCAACAGTGA+AGG - tig0039109:3070-3089 Msa1457770:intron 40.0%
! TTTTGTTACTCTCACCGAAC+AGG - tig0039109:3230-3249 Msa1457770:intron 40.0%
! ATCGCTTCCTTTTACCTGTT+CGG + tig0039109:3247-3266 Msa1457770:intergenic 40.0%
ATACATCTACTGCCGAATCA+GGG - tig0039109:3265-3284 Msa1457770:intron 40.0%
ACTAATCTGACAGGACATTG+TGG - tig0039109:3419-3438 Msa1457770:intron 40.0%
ACTGCAACAAACAACAACCA+AGG + tig0039109:3487-3506 Msa1457770:intergenic 40.0%
ATTTGTCAGGCTAAGATAGC+AGG - tig0039109:3623-3642 Msa1457770:intron 40.0%
GGAAGTTATGCTAACATGTC+TGG - tig0039109:3650-3669 Msa1457770:intron 40.0%
TCAACAGGTTTGTCTACCAT+TGG + tig0039109:3692-3711 Msa1457770:intergenic 40.0%
ACAAACCTGTTGATGCTGAA+TGG - tig0039109:3699-3718 Msa1457770:intron 40.0%
! AAGAAGCCACCAACCTTTTA+AGG + tig0039109:3756-3775 Msa1457770:intergenic 40.0%
!! TTAAAAGGTTGGTGGCTTCT+TGG - tig0039109:3755-3774 Msa1457770:CDS 40.0%
! CAACCTCAATTTTGCATTCG+TGG - tig0039109:3936-3955 Msa1457770:CDS 40.0%
CAACCACGAATGCAAAATTG+AGG + tig0039109:3942-3961 Msa1457770:intergenic 40.0%
! TCCACGCTGATTGACAATTA+TGG - tig0039109:4010-4029 Msa1457770:CDS 40.0%
TCCATAATTGTCAATCAGCG+TGG + tig0039109:4014-4033 Msa1457770:intergenic 40.0%
! CAAAAAGGCTTTTGATGAGG+GGG - tig0039109:4074-4093 Msa1457770:CDS 40.0%
! TAGTGCTTGATAGCATTGCT+TGG - tig0039109:4158-4177 Msa1457770:intron 40.0%
!! ATGTTTGTTGTCTCGAGAGT+TGG + tig0039109:4422-4441 Msa1457770:intergenic 40.0%
AACTCTCGAGACAACAAACA+TGG - tig0039109:4421-4440 Msa1457770:CDS 40.0%
! TTCTCGTAAGGCATTTCAGA+TGG + tig0039109:4554-4573 Msa1457770:intergenic 40.0%
! ATCTGAAATGCCTTACGAGA+AGG - tig0039109:4553-4572 Msa1457770:intron 40.0%
!!! CATGCCATTTTAGCAAGAAG+CGG + tig0039109:4781-4800 Msa1457770:intergenic 40.0%
! CCGTCTTTGGTAACAAATCT+AGG + tig0039109:4837-4856 Msa1457770:intergenic 40.0%
! AGTTTTGCTGGTGAGCTATA+TGG - tig0039109:5071-5090 Msa1457770:five_prime_UTR 40.0%
GAGTTACAACATGGGTACAA+CGG + tig0039109:5168-5187 Msa1457770:intergenic 40.0%
CAGTGGATAGAGTTACAACA+TGG + tig0039109:5177-5196 Msa1457770:intergenic 40.0%
AGCTAGCAAAGATGCTATTC+TGG + tig0039109:5257-5276 Msa1457770:intergenic 40.0%
TTCTTGCTTATCTTGTCCAC+TGG - tig0039109:5362-5381 Msa1457770:five_prime_UTR 40.0%
TAAAAGAGGAGGAGCAGTTG+TGG + tig0039109:814-833 Msa1457770:intergenic 45.0%
TTTACCCTTTCATCAGCTGC+AGG - tig0039109:830-849 Msa1457770:three_prime_UTR 45.0%
AGGTCTAGCGAAACGATCAA+GGG + tig0039109:1085-1104 Msa1457770:intergenic 45.0%
AAGGTCTAGCGAAACGATCA+AGG + tig0039109:1086-1105 Msa1457770:intergenic 45.0%
!!! TCAGGTTTTGAGGGGTTTTC+TGG - tig0039109:1186-1205 Msa1457770:intron 45.0%
AGTGGTAGGAGAAAGAGTGA+TGG - tig0039109:1339-1358 Msa1457770:intron 45.0%
CTGACATGCTACAATGGAGA+AGG - tig0039109:1639-1658 Msa1457770:CDS 45.0%
CTACAATGGAGAAGGGAGTT+TGG - tig0039109:1647-1666 Msa1457770:CDS 45.0%
TCAGGGTATGCTCAAATCCA+GGG + tig0039109:1831-1850 Msa1457770:intergenic 45.0%
TTCAGGGTATGCTCAAATCC+AGG + tig0039109:1832-1851 Msa1457770:intergenic 45.0%
TATTACCCACATGGCCATCA+TGG - tig0039109:1929-1948 Msa1457770:intron 45.0%
CTTCCTTGTCTACACCATGA+TGG + tig0039109:1946-1965 Msa1457770:intergenic 45.0%
CATCATGGTGTAGACAAGGA+AGG - tig0039109:1944-1963 Msa1457770:intron 45.0%
ATGGTGTAGACAAGGAAGGA+AGG - tig0039109:1948-1967 Msa1457770:intron 45.0%
TGATCCGAACAAACTGATGC+AGG - tig0039109:2000-2019 Msa1457770:intron 45.0%
TTTGCAGCAATAGTGCAAGC+AGG + tig0039109:2094-2113 Msa1457770:intergenic 45.0%
CTTGCACTATTGCTGCAAAG+AGG - tig0039109:2095-2114 Msa1457770:intron 45.0%
GCTTTCAGTTGAACGCAAAG+AGG + tig0039109:2183-2202 Msa1457770:intergenic 45.0%
TTGCGTTCAACTGAAAGCCA+AGG - tig0039109:2185-2204 Msa1457770:intron 45.0%
ACAATGAGATATCGCACCTC+GGG + tig0039109:2335-2354 Msa1457770:intergenic 45.0%
GACAATGAGATATCGCACCT+CGG + tig0039109:2336-2355 Msa1457770:intergenic 45.0%
TTTATCATAAATGCCGGCCC+TGG - tig0039109:2525-2544 Msa1457770:CDS 45.0%
CTCCACAACAGTCTAAATCC+AGG + tig0039109:2546-2565 Msa1457770:intergenic 45.0%
TCATGGAGCCATAATGTACC+TGG + tig0039109:2755-2774 Msa1457770:intergenic 45.0%
AGTGAGTTGCCGGAATTTCT+CGG - tig0039109:2842-2861 Msa1457770:intron 45.0%
CAGCCTATTACAAGTCAGAC+GGG + tig0039109:2982-3001 Msa1457770:intergenic 45.0%
! AGAGTTACCATTGGGTATCG+TGG + tig0039109:3118-3137 Msa1457770:intergenic 45.0%
CCATGCGAAGAGTTACCATT+GGG + tig0039109:3126-3145 Msa1457770:intergenic 45.0%
ACTCTCACCGAACAGGTAAA+AGG - tig0039109:3237-3256 Msa1457770:intron 45.0%
GATACATCTACTGCCGAATC+AGG - tig0039109:3264-3283 Msa1457770:intron 45.0%
TTCAGCTTCTGACCCTGATT+CGG + tig0039109:3280-3299 Msa1457770:intergenic 45.0%
ACTTACTTCCTCACGAACAG+GGG + tig0039109:3352-3371 Msa1457770:intergenic 45.0%
GACTTACTTCCTCACGAACA+GGG + tig0039109:3353-3372 Msa1457770:intergenic 45.0%
AGACTTACTTCCTCACGAAC+AGG + tig0039109:3354-3373 Msa1457770:intergenic 45.0%
TCAGGCTAAGATAGCAGGAA+AGG - tig0039109:3628-3647 Msa1457770:intron 45.0%
CAGGCTAAGATAGCAGGAAA+GGG - tig0039109:3629-3648 Msa1457770:intron 45.0%
CTCTTCCATTCAGCATCAAC+AGG + tig0039109:3707-3726 Msa1457770:intergenic 45.0%
CTGTTGATGCTGAATGGAAG+AGG - tig0039109:3705-3724 Msa1457770:intron 45.0%
AGAGGCAAACATCTCTACAG+AGG - tig0039109:3723-3742 Msa1457770:CDS 45.0%
CAGAGGTCTCACACCTTAAA+AGG - tig0039109:3740-3759 Msa1457770:CDS 45.0%
GGTCTCACACCTTAAAAGGT+TGG - tig0039109:3744-3763 Msa1457770:CDS 45.0%
CTCACACCTTAAAAGGTTGG+TGG - tig0039109:3747-3766 Msa1457770:CDS 45.0%
TTGCATTCGTGGTTGCAGTA+CGG - tig0039109:3947-3966 Msa1457770:CDS 45.0%
!!! TGCTATAGCCTTTTTGGGGT+TGG - tig0039109:3983-4002 Msa1457770:CDS 45.0%
AAGAGGACGTGTTCCTGTAT+TGG + tig0039109:4240-4259 Msa1457770:intergenic 45.0%
CTCCAGAAGGAGTTAAAGCT+CGG - tig0039109:4276-4295 Msa1457770:intron 45.0%
TCCAGAAGGAGTTAAAGCTC+GGG - tig0039109:4277-4296 Msa1457770:intron 45.0%
AAGGAGTTAAAGCTCGGGTT+TGG - tig0039109:4282-4301 Msa1457770:intron 45.0%
AGGAGTTAAAGCTCGGGTTT+GGG - tig0039109:4283-4302 Msa1457770:intron 45.0%
!! CAGGAAGTTTGTTGGTCATG+CGG + tig0039109:4364-4383 Msa1457770:intergenic 45.0%
! GATTTTCCTCTGTCTGTGCT+TGG + tig0039109:4466-4485 Msa1457770:intergenic 45.0%
TCTTTCCCTCCTTGCTGAAA+AGG - tig0039109:4486-4505 Msa1457770:intron 45.0%
! CCTAACCTTTTCAGCAAGGA+GGG + tig0039109:4494-4513 Msa1457770:intergenic 45.0%
! ACCTAACCTTTTCAGCAAGG+AGG + tig0039109:4495-4514 Msa1457770:intergenic 45.0%
! CTCACCTAACCTTTTCAGCA+AGG + tig0039109:4498-4517 Msa1457770:intergenic 45.0%
GTTAGGTGAGCTTGAAGAGA+AGG - tig0039109:4508-4527 Msa1457770:intron 45.0%
TGAAATGCCTTACGAGAAGG+CGG - tig0039109:4556-4575 Msa1457770:intron 45.0%
AACAATTCCGCCTTCTCGTA+AGG + tig0039109:4566-4585 Msa1457770:intergenic 45.0%
GTCACCGCTTCTTGCTAAAA+TGG - tig0039109:4774-4793 Msa1457770:CDS 45.0%
CGCTTCTTGCTAAAATGGCA+TGG - tig0039109:4779-4798 Msa1457770:CDS 45.0%
! CTCTCTACGAAGCGTTAATG+AGG - tig0039109:4892-4911 Msa1457770:intron 45.0%
AAGCCAAGTTGCGAGTAAGT+TGG - tig0039109:4952-4971 Msa1457770:CDS 45.0%
ATGCCAACTTACTCGCAACT+TGG + tig0039109:4958-4977 Msa1457770:intergenic 45.0%
GATAGAAAGATGCTCCACAG+AGG - tig0039109:5096-5115 Msa1457770:five_prime_UTR 45.0%
AGTACAACTGTGATCGTGCT+GGG + tig0039109:5133-5152 Msa1457770:intergenic 45.0%
AAGTACAACTGTGATCGTGC+TGG + tig0039109:5134-5153 Msa1457770:intergenic 45.0%
ACTGCCTGCAGCTGATGAAA+GGG + tig0039109:837-856 Msa1457770:intergenic 50.0%
CAACTCCCTCCTACAATGTC+TGG - tig0039109:1057-1076 Msa1457770:intron 50.0%
TCAAGGGGTCCAGACATTGT+AGG + tig0039109:1069-1088 Msa1457770:intergenic 50.0%
GGTCTAGCGAAACGATCAAG+GGG + tig0039109:1084-1103 Msa1457770:intergenic 50.0%
! TGTGGGCTGACATGCTACAA+TGG - tig0039109:1633-1652 Msa1457770:CDS 50.0%
!! TGGTGCTGACACCATTATGC+AGG - tig0039109:1667-1686 Msa1457770:CDS 50.0%
AGCTTCCCTTTCCAAATCCC+TGG - tig0039109:1811-1830 Msa1457770:intron 50.0%
CTACACCATGATGGCCATGT+GGG + tig0039109:1937-1956 Msa1457770:intergenic 50.0%
TCTACACCATGATGGCCATG+TGG + tig0039109:1938-1957 Msa1457770:intergenic 50.0%
TGGCCATCATGGTGTAGACA+AGG - tig0039109:1940-1959 Msa1457770:intron 50.0%
CAACCGCTGAATGAGTTCAC+GGG + tig0039109:2288-2307 Msa1457770:intergenic 50.0%
GCAACCGCTGAATGAGTTCA+CGG + tig0039109:2289-2308 Msa1457770:intergenic 50.0%
ACTCATTCAGCGGTTGCAGA+AGG - tig0039109:2292-2311 Msa1457770:CDS 50.0%
CAATGAGATATCGCACCTCG+GGG + tig0039109:2334-2353 Msa1457770:intergenic 50.0%
CAACAGTCTAAATCCAGGGC+CGG + tig0039109:2541-2560 Msa1457770:intergenic 50.0%
GCCCTGGATTTAGACTGTTG+TGG - tig0039109:2541-2560 Msa1457770:intron 50.0%
CAGGTACCTCCGAGAAATTC+CGG + tig0039109:2854-2873 Msa1457770:intergenic 50.0%
TGGTTCTCAATGGCGAACCA+CGG - tig0039109:3032-3051 Msa1457770:intron 50.0%
GCGGGCAAGACAAGTAGTAA+AGG - tig0039109:3054-3073 Msa1457770:intron 50.0%
GGTTCTCAACAGTGAAGGGA+AGG - tig0039109:3075-3094 Msa1457770:intron 50.0%
CCCAATGGTAACTCTTCGCA+TGG - tig0039109:3123-3142 Msa1457770:CDS 50.0%
GCCATGCGAAGAGTTACCAT+TGG + tig0039109:3127-3146 Msa1457770:intergenic 50.0%
TGGAGTAGCCAACCCCAAAA+AGG + tig0039109:3994-4013 Msa1457770:intergenic 50.0%
TTGATGAGGGGGTCTGTTAG+AGG - tig0039109:4085-4104 Msa1457770:CDS 50.0%
! ACCCGAGCTTTAACTCCTTC+TGG + tig0039109:4281-4300 Msa1457770:intergenic 50.0%
TCATGCGGCAAGCAACTTGA+CGG + tig0039109:4349-4368 Msa1457770:intergenic 50.0%
!! GTCTGTGCTTGGCTTGTTGA+AGG + tig0039109:4455-4474 Msa1457770:intergenic 50.0%
AACAAGCCAAGCACAGACAG+AGG - tig0039109:4457-4476 Msa1457770:intron 50.0%
CCCTCCTTGCTGAAAAGGTT+AGG - tig0039109:4491-4510 Msa1457770:intron 50.0%
GGCGGAATTGTTGAATGCTG+CGG - tig0039109:4574-4593 Msa1457770:CDS 50.0%
CAAATGTTAGGGCCCGTCTT+TGG + tig0039109:4850-4869 Msa1457770:intergenic 50.0%
AGAAAGATGCTCCACAGAGG+AGG - tig0039109:5099-5118 Msa1457770:five_prime_UTR 50.0%
CACTGCCTGCAGCTGATGAA+AGG + tig0039109:838-857 Msa1457770:intergenic 55.0%
GGGGTCCAGACATTGTAGGA+GGG + tig0039109:1065-1084 Msa1457770:intergenic 55.0%
AGGGGTCCAGACATTGTAGG+AGG + tig0039109:1066-1085 Msa1457770:intergenic 55.0%
CAGCCCGTGAACTCATTCAG+CGG - tig0039109:2282-2301 Msa1457770:CDS 55.0%
TGCTGACATTGCCCGATGCT+TGG - tig0039109:2666-2685 Msa1457770:intron 55.0%
GACATTGCCCGATGCTTGGT+TGG - tig0039109:2670-2689 Msa1457770:intron 55.0%
GAGTTGCCGGAATTTCTCGG+AGG - tig0039109:2845-2864 Msa1457770:intron 55.0%
TACCTGCTCTTGTGCAGACG+AGG - tig0039109:2868-2887 Msa1457770:intron 55.0%
ACCTGCTCTTGTGCAGACGA+GGG - tig0039109:2869-2888 Msa1457770:intron 55.0%
TTCTCAATGGCGAACCACGG+CGG - tig0039109:3035-3054 Msa1457770:intron 55.0%
TGCGAAGCCACGATACCCAA+TGG - tig0039109:3108-3127 Msa1457770:intron 55.0%
CACGAACAGGGGTCAGTCTA+AGG + tig0039109:3341-3360 Msa1457770:intergenic 55.0%
TAGACTGACCCCTGTTCGTG+AGG - tig0039109:3341-3360 Msa1457770:intron 55.0%
CATCAGGAAGAAGGCAGCCA+GGG + tig0039109:4312-4331 Msa1457770:intergenic 55.0%
ACATCAGGAAGAAGGCAGCC+AGG + tig0039109:4313-4332 Msa1457770:intergenic 55.0%
TGTTGAATGCTGCGGTCTGC+CGG - tig0039109:4582-4601 Msa1457770:CDS 55.0%
! CTGCTTCCAAAGCATCCACC+CGG + tig0039109:4604-4623 Msa1457770:intergenic 55.0%
GCTTGCTTACATAGACCGCC+AGG - tig0039109:4926-4945 Msa1457770:intron 55.0%
GCAACTTGGCTTCTTCCTGG+CGG + tig0039109:4944-4963 Msa1457770:intergenic 55.0%
CTCGCAACTTGGCTTCTTCC+TGG + tig0039109:4947-4966 Msa1457770:intergenic 55.0%
GGGAGAAACATCCTCCTCTG+TGG + tig0039109:5113-5132 Msa1457770:intergenic 55.0%
CAGCGGTTGCAGAAGGTCGA+CGG - tig0039109:2299-2318 Msa1457770:CDS 60.0%
CGACGGTGACAATTACCCCG+AGG - tig0039109:2316-2335 Msa1457770:CDS 60.0%
TCCCTCGTCTGCACAAGAGC+AGG + tig0039109:2873-2892 Msa1457770:intergenic 60.0%
TGCTCTTGTGCAGACGAGGG+AGG - tig0039109:2872-2891 Msa1457770:intron 60.0%
TCTCAATGGCGAACCACGGC+GGG - tig0039109:3036-3055 Msa1457770:intron 60.0%
ACTACTTGTCTTGCCCGCCG+TGG + tig0039109:3052-3071 Msa1457770:intergenic 60.0%
GTTGAATGCTGCGGTCTGCC+GGG - tig0039109:4583-4602 Msa1457770:CDS 60.0%
AGCTCGGGTTTGGGTAGCCC+TGG - tig0039109:4292-4311 Msa1457770:intron 65.0%
GGTCTGCCGGGTGGATGCTT+TGG - tig0039109:4595-4614 Msa1457770:CDS 65.0%
GAATGCTGCGGTCTGCCGGG+TGG - tig0039109:4586-4605 Msa1457770:CDS 70.0%
Chromosome Type Strat End Strand Name
tig0039109 gene 663 5393 663 ID=Msa1457770;Name=Msa1457770
tig0039109 mRNA 663 5393 663 ID=Msa1457770-mRNA-1;Parent=Msa1457770;Name=Msa1457770-mRNA-1;_AED=0.12;_eAED=0.12;_QI=409|0.85|0.86|1|1|1|15|309|643
tig0039109 exon 663 992 663 ID=Msa1457770-mRNA-1:exon:21375;Parent=Msa1457770-mRNA-1
tig0039109 exon 1091 1165 1091 ID=Msa1457770-mRNA-1:exon:21374;Parent=Msa1457770-mRNA-1
tig0039109 exon 1413 1810 1413 ID=Msa1457770-mRNA-1:exon:21373;Parent=Msa1457770-mRNA-1
tig0039109 exon 2280 2424 2280 ID=Msa1457770-mRNA-1:exon:21372;Parent=Msa1457770-mRNA-1
tig0039109 exon 2506 2550 2506 ID=Msa1457770-mRNA-1:exon:21371;Parent=Msa1457770-mRNA-1
tig0039109 exon 2691 2804 2691 ID=Msa1457770-mRNA-1:exon:21370;Parent=Msa1457770-mRNA-1
tig0039109 exon 2927 3025 2927 ID=Msa1457770-mRNA-1:exon:21369;Parent=Msa1457770-mRNA-1
tig0039109 exon 3113 3212 3113 ID=Msa1457770-mRNA-1:exon:21368;Parent=Msa1457770-mRNA-1
tig0039109 exon 3301 3350 3301 ID=Msa1457770-mRNA-1:exon:21367;Parent=Msa1457770-mRNA-1
tig0039109 exon 3445 3546 3445 ID=Msa1457770-mRNA-1:exon:21366;Parent=Msa1457770-mRNA-1
tig0039109 exon 3719 3796 3719 ID=Msa1457770-mRNA-1:exon:21365;Parent=Msa1457770-mRNA-1
tig0039109 exon 3897 4163 3897 ID=Msa1457770-mRNA-1:exon:21364;Parent=Msa1457770-mRNA-1
tig0039109 exon 4368 4467 4368 ID=Msa1457770-mRNA-1:exon:21363;Parent=Msa1457770-mRNA-1
tig0039109 exon 4563 4866 4563 ID=Msa1457770-mRNA-1:exon:21362;Parent=Msa1457770-mRNA-1
tig0039109 exon 4951 5393 4951 ID=Msa1457770-mRNA-1:exon:21361;Parent=Msa1457770-mRNA-1
tig0039109 five_prime_UTR 4985 5393 4985 ID=Msa1457770-mRNA-1:five_prime_utr;Parent=Msa1457770-mRNA-1
tig0039109 CDS 4951 4984 4951 ID=Msa1457770-mRNA-1:cds;Parent=Msa1457770-mRNA-1
tig0039109 CDS 4563 4866 4563 ID=Msa1457770-mRNA-1:cds;Parent=Msa1457770-mRNA-1
tig0039109 CDS 4368 4467 4368 ID=Msa1457770-mRNA-1:cds;Parent=Msa1457770-mRNA-1
tig0039109 CDS 3897 4163 3897 ID=Msa1457770-mRNA-1:cds;Parent=Msa1457770-mRNA-1
tig0039109 CDS 3719 3796 3719 ID=Msa1457770-mRNA-1:cds;Parent=Msa1457770-mRNA-1
tig0039109 CDS 3445 3546 3445 ID=Msa1457770-mRNA-1:cds;Parent=Msa1457770-mRNA-1
tig0039109 CDS 3301 3350 3301 ID=Msa1457770-mRNA-1:cds;Parent=Msa1457770-mRNA-1
tig0039109 CDS 3113 3212 3113 ID=Msa1457770-mRNA-1:cds;Parent=Msa1457770-mRNA-1
tig0039109 CDS 2927 3025 2927 ID=Msa1457770-mRNA-1:cds;Parent=Msa1457770-mRNA-1
tig0039109 CDS 2691 2804 2691 ID=Msa1457770-mRNA-1:cds;Parent=Msa1457770-mRNA-1
tig0039109 CDS 2506 2550 2506 ID=Msa1457770-mRNA-1:cds;Parent=Msa1457770-mRNA-1
tig0039109 CDS 2280 2424 2280 ID=Msa1457770-mRNA-1:cds;Parent=Msa1457770-mRNA-1
tig0039109 CDS 1413 1810 1413 ID=Msa1457770-mRNA-1:cds;Parent=Msa1457770-mRNA-1
tig0039109 CDS 1091 1165 1091 ID=Msa1457770-mRNA-1:cds;Parent=Msa1457770-mRNA-1
tig0039109 CDS 972 992 972 ID=Msa1457770-mRNA-1:cds;Parent=Msa1457770-mRNA-1
tig0039109 three_prime_UTR 663 971 663 ID=Msa1457770-mRNA-1:three_prime_utr;Parent=Msa1457770-mRNA-1
Gene Sequence

>Msa1457770

ATGTCTGGACCCCTTGATCGTTTCGCTAGACCTTGTTTTGAGGGGTTTTCTGGCAGTGATGAGAAGCGAGAGAGAAGATCTGATTTTGAGAATTCAGAAGATGAAAGGAGAACCAGAATTGGATCCTTAAAAAAGAAAGCTTTAAGTGCATCAACCAAGTTTAAGCATTCTCTTAGAAAGAAGAGTGGTAGGAGAAAGAGTGATGGACGTGTTAGCTCTGTTTCTATTGAGGATGTTAGAGATGTTGAGGAGCTTCAAGCTGTTGATGCTTTTCGTCAGTCTTTGATCATGGATGAGTTGCTTCCTGAAGCTTTTGATGATTACCATATGATGTTAAGATTTCTGAAAGCAAGGAAATTTGATATTGAAAAAGCAAAGCATATGTGGGCTGACATGCTACAATGGAGAAGGGAGTTTGGTGCTGACACCATTATGCAGGATTTTGAGTTCAAGGAGTTAAATGAAGTTGTGAAGTATTACCCACATGGCCATCATGGTGTAGACAAGGAAGGAAGGCCTGTTTATATTGAAAGACTTGGAAAAGTTGATCCGAACAAACTGATGCAGGTTACAACTATGGATAGATATGTTAAGTACCATGTGCAAGAGTTTGAGAAATCTTTTGCAATAAAGTTTCCTGCTTGCACTATTGCTGCAAAGAGGCACATAGATTCAAGCACCACAATCTTAGATGTTCAAGGAGTGGGCCTTAAGAATTTTACAAAGTCAGCCCGTGAACTCATTCAGCGGTTGCAGAAGGTCGACGGTGACAATTACCCCGAGACACTCTGCCAAATGTTTATCATAAATGCCGGCCCTGGATTTAGACTGTTGTGGAGCACCGTCAAGTCTTTTCTTGATCCTAAAACAACCTCAAAGATCCACGTTCTTGGAAACAAGTATCAGAGCAAATTACTTGAAGTAATTGATGCCAGTGAGTTGCCGGAATTTCTCGGAGGTACCTGCTCTTGTGCAGACGAGGGAGGATGCCTTAGATCTGATAAAGGGCCATGGAAAAATCCTGAAATATTGAAGATGGTTCTCAATGGCGAACCACGGCGGGCAAGACAAGTAGTAAAGGTTCTCAACAGTGAAGGGAAGGTTATTGCATATGCGAAGCCACGATACCCAATGGTAAAAGGAAGCGATACATCTACTGCCGAATCAGGGTCAGAAGCTGAAGATATAGCTTCTCCAAAAGCAATGAAGAGCTATTCACACCTTAGACTGACCCCTGTTCGTGAGGAATCCACAATATTTGGAGATATTGTGAGGATGATGCTGATAATCAAAGCTAAGATAGCAGGAAAGGGAAGTTATGCTAACATGTCTGGGTATGATGAATATGTTCCAATGGTAGACAAACCTGTTGATGCTGAATGGAAGAGGCAAACATCTCTACAGAGGTCTCACACCTTAAAAGGTTGGTGGCTTCTTGGAACACGTCCTCTTCCTAACATACAAAACACTCCAGAAGGAGTTAAAGCTCGGGTTTGGGTAGCCCTGGCTGCCTTCTTCCTGATGTTATTTGCTCTTTTCCGTCAAGTTGCTTGCCGCATGACCAACAAACTTCCTGCAATATCATCTAATGATGATCAGAGAATTTCAGAACCAACTCTCGAGACAACAAACATGGAAGTTCTTCCTTCAACAAGCCAAGCACAGACAGAGGAAAATCTCTTTCCCTCCTTGCTGAAAAGGTTAGGTGAGCTTGAAGAGAAGGTTGACACACTACAATCTAAGCCATCTGAAATGCCTTACGAGAAGGCGGAATTGTTGAATGCTGCGGTCTGCCGGGTGGATGCTTTGGAAGCAGAGTTAATTGCTACTAAAAAGGCTCTCTACGAAGCGTTAATGAGGCAAGAAGAGCTGCTTGCTTACATAGACCGCCAGGAAGAAGCCAAGTTGCGAAAAAAGAAGTTTTGCTGGTGA

Protein sequence

>Msa1457770

MSGPLDRFARPCFEGFSGSDEKRERRSDFENSEDERRTRIGSLKKKALSASTKFKHSLRKKSGRRKSDGRVSSVSIEDVRDVEELQAVDAFRQSLIMDELLPEAFDDYHMMLRFLKARKFDIEKAKHMWADMLQWRREFGADTIMQDFEFKELNEVVKYYPHGHHGVDKEGRPVYIERLGKVDPNKLMQVTTMDRYVKYHVQEFEKSFAIKFPACTIAAKRHIDSSTTILDVQGVGLKNFTKSARELIQRLQKVDGDNYPETLCQMFIINAGPGFRLLWSTVKSFLDPKTTSKIHVLGNKYQSKLLEVIDASELPEFLGGTCSCADEGGCLRSDKGPWKNPEILKMVLNGEPRRARQVVKVLNSEGKVIAYAKPRYPMVKGSDTSTAESGSEAEDIASPKAMKSYSHLRLTPVREESTIFGDIVRMMLIIKAKIAGKGSYANMSGYDEYVPMVDKPVDAEWKRQTSLQRSHTLKGWWLLGTRPLPNIQNTPEGVKARVWVALAAFFLMLFALFRQVACRMTNKLPAISSNDDQRISEPTLETTNMEVLPSTSQAQTEENLFPSLLKRLGELEEKVDTLQSKPSEMPYEKAELLNAAVCRVDALEAELIATKKALYEALMRQEELLAYIDRQEEAKLRKKKFCW*