Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387110 | XP_013462014.1 | 96.639 | 357 | 12 | 0 | 1 | 357 | 1 | 357 | 0.0 | 719 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387110 | sp|Q07469|BSPA_POPDE | 29.643 | 280 | 165 | 7 | 70 | 347 | 52 | 301 | 8.24e-35 | 132 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387110 | A0A072V1Y8 | 96.639 | 357 | 12 | 0 | 1 | 357 | 1 | 357 | 0.0 | 719 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0387090 | Msa0387110 | 0.909951 | 3.225012e-82 | -8.615850e-47 |
| Msa0387110 | Msa0433880 | 0.874576 | 6.064975e-68 | -8.615850e-47 |
| Msa0387110 | Msa0477790 | 0.874471 | 6.583736e-68 | -8.615850e-47 |
| Msa0387110 | Msa1348730 | 0.996336 | 3.011410e-226 | -8.615850e-47 |
| Msa0387110 | Msa1348780 | 0.978310 | 1.474582e-145 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387110 | MtrunA17_Chr3g0140051 | 96.639 | 357 | 12 | 0 | 1 | 357 | 1 | 357 | 0.0 | 719 |
| Msa0387110 | MtrunA17_Chr3g0140061 | 96.317 | 353 | 13 | 0 | 1 | 353 | 1 | 353 | 0.0 | 708 |
| Msa0387110 | MtrunA17_Chr6g0486081 | 52.698 | 315 | 140 | 4 | 38 | 350 | 29 | 336 | 4.27e-122 | 355 |
| Msa0387110 | MtrunA17_Chr6g0486101 | 50.794 | 315 | 141 | 4 | 38 | 350 | 30 | 332 | 1.13e-116 | 341 |
| Msa0387110 | MtrunA17_Chr6g0486091 | 49.524 | 315 | 145 | 4 | 38 | 350 | 31 | 333 | 9.89e-112 | 328 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387110 | AT4G28940.1 | 57.321 | 321 | 126 | 3 | 38 | 356 | 33 | 344 | 1.23e-138 | 398 |
| Msa0387110 | AT4G28940.2 | 58.621 | 261 | 99 | 2 | 96 | 356 | 1 | 252 | 5.93e-113 | 329 |
| Msa0387110 | AT4G24340.1 | 37.261 | 314 | 174 | 5 | 39 | 350 | 43 | 335 | 4.02e-66 | 213 |
| Msa0387110 | AT4G24350.1 | 36.306 | 314 | 180 | 6 | 39 | 350 | 38 | 333 | 1.11e-63 | 206 |
| Msa0387110 | AT4G24350.2 | 34.444 | 270 | 159 | 5 | 39 | 306 | 38 | 291 | 1.94e-50 | 171 |
| Msa0387110 | AT4G24350.3 | 36.667 | 240 | 134 | 5 | 111 | 350 | 1 | 222 | 2.90e-48 | 162 |
| Msa0387110 | AT4G24350.4 | 34.634 | 205 | 118 | 4 | 102 | 306 | 9 | 197 | 1.61e-37 | 134 |
Find 104 sgRNAs with CRISPR-Local
Find 270 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACGAAGAGGGTCCTTATT+TGG | 0.132523 | 3_1:-90954132 | Msa0387110:CDS |
| GACTAAATGATTAATATTTA+TGG | 0.136792 | 3_1:-90954426 | None:intergenic |
| CACAACTCACGAATGCATTT+TGG | 0.147904 | 3_1:+90954192 | None:intergenic |
| ATGTTGCTATTCCACATTAT+TGG | 0.227186 | 3_1:-90953486 | Msa0387110:CDS |
| CTTCCTATATTGCGTGTGTC+TGG | 0.268657 | 3_1:-90954292 | Msa0387110:five_prime_UTR |
| GGATTCCCTTCATTGCTATC+AGG | 0.272090 | 3_1:-90949988 | Msa0387110:CDS |
| AACAAAGGCAACATGCTCTT+TGG | 0.272171 | 3_1:-90951188 | Msa0387110:CDS |
| TGTTGCTATTCCACATTATT+GGG | 0.272480 | 3_1:-90953485 | Msa0387110:CDS |
| GGTATGATTAAACCCAAATA+AGG | 0.283272 | 3_1:+90954119 | None:intergenic |
| GGGTCAAGTTCAAAAGAATT+TGG | 0.317467 | 3_1:+90954098 | None:intergenic |
| CTTTGTTCTGGTTGGTTGTC+CGG | 0.319062 | 3_1:-90949763 | Msa0387110:three_prime_UTR |
| TATCAGGGCTCTTTCTGATT+TGG | 0.324485 | 3_1:-90949972 | Msa0387110:CDS |
| CTCATTTGGCACTTTGGAGC+TGG | 0.328354 | 3_1:-90953462 | Msa0387110:CDS |
| TCCACATTATTGGGCTCATT+TGG | 0.331452 | 3_1:-90953476 | Msa0387110:CDS |
| TTGGGTATTAAACAACATAA+AGG | 0.346307 | 3_1:+90954211 | None:intergenic |
| AGAGCATGTTGCCTTTGTTC+AGG | 0.348607 | 3_1:+90951192 | None:intergenic |
| AACGAAGAGGGTCCTTATTT+GGG | 0.350130 | 3_1:-90954131 | Msa0387110:CDS |
| GCATATAATTGCACTAATTA+CGG | 0.358763 | 3_1:+90949799 | None:intergenic |
| CATAGACAACAACTTTGTTC+TGG | 0.367043 | 3_1:-90949775 | Msa0387110:three_prime_UTR |
| GTTGTTCATTACGGGATTGC+TGG | 0.372697 | 3_1:-90953538 | Msa0387110:CDS |
| TAGATGGAGTTGTTCATTAC+GGG | 0.375885 | 3_1:-90953546 | Msa0387110:CDS |
| CCCGTCATGACTAGTATAAC+TGG | 0.382128 | 3_1:+90953728 | None:intergenic |
| ACAAGAAATGAAGGACCTAA+TGG | 0.391757 | 3_1:+90954315 | None:intergenic |
| CGGTAGTACTTGGAATCAAC+GGG | 0.404829 | 3_1:+90951162 | None:intergenic |
| ATTGGGCTCATTTGGCACTT+TGG | 0.416383 | 3_1:-90953468 | Msa0387110:CDS |
| CTGTCTACAAGCACAACCTT+TGG | 0.418437 | 3_1:+90950133 | None:intergenic |
| GTCAGCAGCACTTATGTTTG+AGG | 0.420611 | 3_1:+90951287 | None:intergenic |
| AGGGCTCTTTCTGATTTGGC+TGG | 0.421164 | 3_1:-90949968 | Msa0387110:CDS |
| GTAGATGGAGTTGTTCATTA+CGG | 0.424060 | 3_1:-90953547 | Msa0387110:CDS |
| ATTTACGCTTTATTATATTC+CGG | 0.425732 | 3_1:+90949744 | None:intergenic |
| ACAAAGGCAACATGCTCTTT+GGG | 0.425980 | 3_1:-90951187 | Msa0387110:CDS |
| ACAATCATCTCAACAACCTT+TGG | 0.430065 | 3_1:-90951251 | Msa0387110:CDS |
| TTTGGCAATACGGTAGTACT+TGG | 0.430210 | 3_1:+90951152 | None:intergenic |
| GAAGGAAGGAGATTTCGTTT+TGG | 0.431427 | 3_1:-90953767 | Msa0387110:intron |
| CTTTCTGATTTGGCTGGCGG+CGG | 0.432701 | 3_1:-90949962 | Msa0387110:CDS |
| CTCTTATATGCTTGCAACAA+AGG | 0.444049 | 3_1:-90950009 | Msa0387110:CDS |
| TTCCTATATTGCGTGTGTCT+GGG | 0.450123 | 3_1:-90954291 | Msa0387110:five_prime_UTR |
| CACCCAGACACACGCAATAT+AGG | 0.451282 | 3_1:+90954289 | None:intergenic |
| GCAAACCCTTCCTTGCATAT+CGG | 0.458109 | 3_1:-90953511 | Msa0387110:CDS |
| TATTAATATATGCAGAGGTA+TGG | 0.462558 | 3_1:-90951393 | Msa0387110:intron |
| AACTAAGCACATCATACAAT+AGG | 0.463759 | 3_1:-90949662 | Msa0387110:three_prime_UTR |
| CAAGAAATGAAGGACCTAAT+GGG | 0.467759 | 3_1:+90954316 | None:intergenic |
| GTTAAACTTATTGTAGATGA+AGG | 0.469473 | 3_1:+90950066 | None:intergenic |
| GACAACAACTTTGTTCTGGT+TGG | 0.479422 | 3_1:-90949771 | Msa0387110:three_prime_UTR |
| TGTTCAGGAATACCATCAAC+GGG | 0.480731 | 3_1:+90951207 | None:intergenic |
| TTTGGCACTTTGGAGCTGGC+AGG | 0.483139 | 3_1:-90953458 | Msa0387110:intron |
| TCTCTTCTGGTTGGTACCAA+AGG | 0.484946 | 3_1:+90951235 | None:intergenic |
| AAGAGCCCTGATAGCAATGA+AGG | 0.499791 | 3_1:+90949982 | None:intergenic |
| ATTAATATATGCAGAGGTAT+GGG | 0.510376 | 3_1:-90951392 | Msa0387110:intron |
| TATAACTGGTTTGTCGCCAA+TGG | 0.510741 | 3_1:+90953742 | None:intergenic |
| GACCCTCTTCTTCAAAATCC+AGG | 0.523176 | 3_1:-90954080 | Msa0387110:CDS |
| CCCCTTGGCTTGGTCTGGCT+AGG | 0.523363 | 3_1:+90954372 | None:intergenic |
| GCCTAGCCAGACCAAGCCAA+GGG | 0.528804 | 3_1:-90954373 | Msa0387110:five_prime_UTR |
| TTTATAGAGAATAGAATGAA+GGG | 0.530161 | 3_1:+90954345 | None:intergenic |
| GGCTGATACCTTCTCACCAC+TGG | 0.530809 | 3_1:-90949921 | Msa0387110:CDS |
| GCTTGGTCTGGCTAGGCCGT+AGG | 0.534557 | 3_1:+90954379 | None:intergenic |
| TATAGGAAGACAAGAAATGA+AGG | 0.538101 | 3_1:+90954306 | None:intergenic |
| ACAGAGTTGGTTGCGGCCAG+TGG | 0.543909 | 3_1:+90949905 | None:intergenic |
| GATGCACTTTCCATGTCCAC+TGG | 0.544627 | 3_1:+90950037 | None:intergenic |
| GTAGACAGAGGAACAAGTGC+AGG | 0.547219 | 3_1:-90950118 | Msa0387110:CDS |
| GATTCCCTTCATTGCTATCA+GGG | 0.551884 | 3_1:-90949987 | Msa0387110:CDS |
| TTGTCACTAGCAGTATAGCC+TGG | 0.553691 | 3_1:+90954062 | None:intergenic |
| TAACGTGAGTCCAGTGGACA+TGG | 0.555563 | 3_1:-90950047 | Msa0387110:CDS |
| ACCAGTTATACTAGTCATGA+CGG | 0.559335 | 3_1:-90953729 | Msa0387110:CDS |
| GGCCTAGCCAGACCAAGCCA+AGG | 0.560772 | 3_1:-90954374 | Msa0387110:five_prime_UTR |
| ACGGTAGTACTTGGAATCAA+CGG | 0.561307 | 3_1:+90951161 | None:intergenic |
| ACAGAAAATACTAACTCCTA+CGG | 0.561827 | 3_1:-90954395 | Msa0387110:five_prime_UTR |
| CGCAACCAACTCTGTTGCTG+TGG | 0.562029 | 3_1:-90949897 | Msa0387110:CDS |
| AAATGAAGGACCTAATGGGT+TGG | 0.575375 | 3_1:+90954320 | None:intergenic |
| AAAACAATGGTGACTACACA+AGG | 0.576219 | 3_1:-90951341 | Msa0387110:CDS |
| GCCAAATGAGCCCAATAATG+TGG | 0.579248 | 3_1:+90953475 | None:intergenic |
| ACATCTCCGATATGCAAGGA+AGG | 0.579860 | 3_1:+90953505 | None:intergenic |
| TGAGAAGGTATCAGCCTCGT+TGG | 0.580666 | 3_1:+90949928 | None:intergenic |
| GGTTGCGGCCAGTGGTGAGA+AGG | 0.583884 | 3_1:+90949913 | None:intergenic |
| TTGTTCAGGAATACCATCAA+CGG | 0.585225 | 3_1:+90951206 | None:intergenic |
| GGACATGGAAAGTGCATCAG+TGG | 0.586546 | 3_1:-90950032 | Msa0387110:CDS |
| GTGACTACACAAGGGACGTA+GGG | 0.588370 | 3_1:-90951332 | Msa0387110:CDS |
| TCATAACATAGTTCACCACT+TGG | 0.603986 | 3_1:+90949838 | None:intergenic |
| GCTCTTTCTGATTTGGCTGG+CGG | 0.606832 | 3_1:-90949965 | Msa0387110:CDS |
| CCAGTTATACTAGTCATGAC+GGG | 0.608599 | 3_1:-90953728 | Msa0387110:CDS |
| CACAGCAACAGAGTTGGTTG+CGG | 0.609393 | 3_1:+90949898 | None:intergenic |
| ATTGCTAAAATCAACGAAGA+GGG | 0.614781 | 3_1:-90954143 | Msa0387110:CDS |
| ATCAGCCTCGTTGGACTCTG+CGG | 0.618468 | 3_1:+90949937 | None:intergenic |
| AGCAACATCTCCGATATGCA+AGG | 0.618530 | 3_1:+90953501 | None:intergenic |
| AATGACCACAGCAACAGAGT+TGG | 0.629425 | 3_1:+90949892 | None:intergenic |
| AATTGCTAAAATCAACGAAG+AGG | 0.634351 | 3_1:-90954144 | Msa0387110:CDS |
| ACATAGTTCACCACTTGGAG+TGG | 0.638822 | 3_1:+90949843 | None:intergenic |
| ATGCTTGACAACGACACCAA+AGG | 0.644624 | 3_1:-90950149 | Msa0387110:CDS |
| AGAGCCCTGATAGCAATGAA+GGG | 0.645404 | 3_1:+90949983 | None:intergenic |
| GGTGACTACACAAGGGACGT+AGG | 0.645883 | 3_1:-90951333 | Msa0387110:CDS |
| TTGATGGTATTCCTGAACAA+AGG | 0.648077 | 3_1:-90951203 | Msa0387110:CDS |
| CATCTCCGATATGCAAGGAA+GGG | 0.651532 | 3_1:+90953506 | None:intergenic |
| TGTCATCACACCACTCCAAG+TGG | 0.653556 | 3_1:-90949853 | Msa0387110:CDS |
| TAAGTTTAACGTGAGTCCAG+TGG | 0.659074 | 3_1:-90950053 | Msa0387110:CDS |
| AGTCATGACGGGATTGAGTG+TGG | 0.668616 | 3_1:-90953717 | Msa0387110:intron |
| TAGACAGAGGAACAAGTGCA+GGG | 0.675462 | 3_1:-90950117 | Msa0387110:CDS |
| CCTAGCCAGACCAAGCCAAG+GGG | 0.681589 | 3_1:-90954372 | Msa0387110:five_prime_UTR |
| TATATGCAGAGGTATGGGCA+AGG | 0.693984 | 3_1:-90951387 | Msa0387110:intron |
| AAGGTTGTGCTTGTAGACAG+AGG | 0.704702 | 3_1:-90950130 | Msa0387110:CDS |
| CTAGCCAGACCAAGCCAAGG+GGG | 0.709982 | 3_1:-90954371 | Msa0387110:five_prime_UTR |
| ACGTTACCACTAGAAAACAA+TGG | 0.714437 | 3_1:-90951354 | Msa0387110:CDS |
| AAACAATGGTGACTACACAA+GGG | 0.726560 | 3_1:-90951340 | Msa0387110:CDS |
| CGGCACCGCAGAGTCCAACG+AGG | 0.744926 | 3_1:-90949942 | Msa0387110:CDS |
| GGTAGTACTTGGAATCAACG+GGG | 0.827912 | 3_1:+90951163 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATATATATAATTTTAATTA+TGG | + | chr3_1:90952244-90952263 | None:intergenic | 0.0% |
| !! | ATATATTGTAATAGAAAAAA+AGG | + | chr3_1:90951024-90951043 | None:intergenic | 10.0% |
| !!! | TATTACAATATATAACATTT+TGG | - | chr3_1:90951031-90951050 | Msa0387110:intron | 10.0% |
| !!! | TGTTTTAATAAAATTACTTT+TGG | + | chr3_1:90951375-90951394 | None:intergenic | 10.0% |
| !! | TGTAATAAAGTATAAATTAT+AGG | + | chr3_1:90951668-90951687 | None:intergenic | 10.0% |
| !!! | TAAAATTACTTTTCTTTTTA+AGG | + | chr3_1:90952151-90952170 | None:intergenic | 10.0% |
| !!! | TATTGATAGTTTTTTTTTAA+GGG | + | chr3_1:90952339-90952358 | None:intergenic | 10.0% |
| !!! | ATATTGATAGTTTTTTTTTA+AGG | + | chr3_1:90952340-90952359 | None:intergenic | 10.0% |
| !!! | ACTTTTTTTTTATTCATTTT+TGG | - | chr3_1:90952541-90952560 | Msa0387110:intron | 10.0% |
| !! | TTTAAGTAAAATTTAATCAA+AGG | + | chr3_1:90953081-90953100 | None:intergenic | 10.0% |
| !!! | TTTTTTTAATGAAAATTTGA+AGG | + | chr3_1:90953272-90953291 | None:intergenic | 10.0% |
| !!! | GAGTTATTTATTTTATTTTT+TGG | - | chr3_1:90953423-90953442 | Msa0387110:intron | 10.0% |
| !! | AAAACAAAAATAAAATTACA+CGG | - | chr3_1:90953813-90953832 | Msa0387110:intron | 10.0% |
| !! | TCATATGTATAATTTAATCT+TGG | + | chr3_1:90950068-90950087 | None:intergenic | 15.0% |
| !!! | TAATTTTCCTCTTTTTTTTA+TGG | - | chr3_1:90950252-90950271 | Msa0387110:intron | 15.0% |
| !! | TAAATAAATTAAAGTTGAGT+TGG | - | chr3_1:90950874-90950893 | Msa0387110:intron | 15.0% |
| !! | AAATAAATTAAAGTTGAGTT+GGG | - | chr3_1:90950875-90950894 | Msa0387110:intron | 15.0% |
| !! | AAATGTTATACTATTATCAA+TGG | - | chr3_1:90950987-90951006 | Msa0387110:intron | 15.0% |
| !!! | CATTTGGTAATATTAATTTA+AGG | + | chr3_1:90951314-90951333 | None:intergenic | 15.0% |
| !! | TAACTCAATATAAAATGATA+TGG | - | chr3_1:90951413-90951432 | Msa0387110:intron | 15.0% |
| !!! | TAAAAAGAAAAGCTTTTTTA+TGG | + | chr3_1:90951865-90951884 | None:intergenic | 15.0% |
| !!! | AAATCATGTAGTTTTTTTTT+AGG | - | chr3_1:90952046-90952065 | Msa0387110:intron | 15.0% |
| !!! | AATCATGTAGTTTTTTTTTA+GGG | - | chr3_1:90952047-90952066 | Msa0387110:intron | 15.0% |
| !!! | TTTTATAATTAGTAACAAAC+AGG | + | chr3_1:90952107-90952126 | None:intergenic | 15.0% |
| !!! | ATTGATAGTTTTTTTTTAAG+GGG | + | chr3_1:90952338-90952357 | None:intergenic | 15.0% |
| !! | AGTTAATTAATTAACTATGA+TGG | - | chr3_1:90952510-90952529 | Msa0387110:intron | 15.0% |
| !! | AATAATATTAATATATGCAG+AGG | - | chr3_1:90952652-90952671 | Msa0387110:intron | 15.0% |
| !!! | TCTTTGAATTTTTACATATA+TGG | + | chr3_1:90952958-90952977 | None:intergenic | 15.0% |
| !!! | TCAATTTTTACGTATAATTA+AGG | + | chr3_1:90953006-90953025 | None:intergenic | 15.0% |
| !!! | ATTTTACTTAAATTTGAGAT+CGG | - | chr3_1:90953089-90953108 | Msa0387110:intron | 15.0% |
| !!! | ACTAATATCGATTTTTATTA+TGG | + | chr3_1:90953170-90953189 | None:intergenic | 15.0% |
| !!! | TATATTGCATTTTATATGTA+GGG | + | chr3_1:90953521-90953540 | None:intergenic | 15.0% |
| !!! | TAGGAGTATATTAAATAATT+AGG | + | chr3_1:90953720-90953739 | None:intergenic | 15.0% |
| !!! | AATATAAATCGTGTTTTTAT+TGG | - | chr3_1:90953746-90953765 | Msa0387110:CDS | 15.0% |
| !! | AGAGATAAAAAAAAAAATGT+TGG | + | chr3_1:90953791-90953810 | None:intergenic | 15.0% |
| !!! | TTTTCGAATATATATTTTTC+AGG | - | chr3_1:90953844-90953863 | Msa0387110:intron | 15.0% |
| !! | TTTATAGAGAATAGAATGAA+GGG | + | chr3_1:90949708-90949727 | None:intergenic | 20.0% |
| !!! | TTTTATAGAGAATAGAATGA+AGG | + | chr3_1:90949709-90949728 | None:intergenic | 20.0% |
| !! | TGAAATTAATTAACTTTGCA+AGG | - | chr3_1:90950191-90950210 | Msa0387110:intron | 20.0% |
| !! | TTATTAGCCATAAAAAAAAG+AGG | + | chr3_1:90950262-90950281 | None:intergenic | 20.0% |
| !!! | TTTAATAGTTGAGATTTTGT+TGG | + | chr3_1:90950839-90950858 | None:intergenic | 20.0% |
| !!! | AATAAATTAAAGTTGAGTTG+GGG | - | chr3_1:90950876-90950895 | Msa0387110:intron | 20.0% |
| !!! | GTATAACATTTTAATTCGAA+GGG | + | chr3_1:90950978-90950997 | None:intergenic | 20.0% |
| !!! | AGTATAACATTTTAATTCGA+AGG | + | chr3_1:90950979-90950998 | None:intergenic | 20.0% |
| !!! | TACAATATATAACATTTTGG+TGG | - | chr3_1:90951034-90951053 | Msa0387110:intron | 20.0% |
| !! | ATATTAATGTGATCGTATAT+TGG | - | chr3_1:90951147-90951166 | Msa0387110:CDS | 20.0% |
| !! | TTATAATGCAAAATAATACG+TGG | - | chr3_1:90951184-90951203 | Msa0387110:CDS | 20.0% |
| !!! | AAATTACTTTTGGTTTATTG+TGG | + | chr3_1:90951365-90951384 | None:intergenic | 20.0% |
| !!! | ATTTTATTAAAACAGAAGTC+AGG | - | chr3_1:90951381-90951400 | Msa0387110:CDS | 20.0% |
| !!! | GTTTTACTCTTACTTTAAAT+TGG | + | chr3_1:90951541-90951560 | None:intergenic | 20.0% |
| !! | ATTTATAGTTACATGCATAT+TGG | - | chr3_1:90951697-90951716 | Msa0387110:intron | 20.0% |
| !! | TTTATAGTTACATGCATATT+GGG | - | chr3_1:90951698-90951717 | Msa0387110:intron | 20.0% |
| !!! | TATGTAATTGTAGAATTTTG+CGG | - | chr3_1:90951721-90951740 | Msa0387110:intron | 20.0% |
| !!! | TAGGTAAAGATTTTTTTAGA+TGG | - | chr3_1:90951812-90951831 | Msa0387110:intron | 20.0% |
| !!! | AATATGCAATTTCTTTTTCT+TGG | + | chr3_1:90951889-90951908 | None:intergenic | 20.0% |
| !! | TATTTACAGGTAATTTGATT+AGG | + | chr3_1:90952012-90952031 | None:intergenic | 20.0% |
| !!! | CATTTTTCTGTGTTTTTTTT+TGG | + | chr3_1:90952374-90952393 | None:intergenic | 20.0% |
| !! | TATCATGATTAATATATACG+TGG | - | chr3_1:90952476-90952495 | Msa0387110:intron | 20.0% |
| !! | ATTAGCGAATTGTATATTAA+CGG | - | chr3_1:90952603-90952622 | Msa0387110:intron | 20.0% |
| !!! | AATTTTTACATATATGGTAC+TGG | + | chr3_1:90952952-90952971 | None:intergenic | 20.0% |
| !!! | AATGTTTTTGTTCCAAATTT+TGG | - | chr3_1:90953038-90953057 | Msa0387110:intron | 20.0% |
| !!! | ATATTGCATTTTATATGTAG+GGG | + | chr3_1:90953520-90953539 | None:intergenic | 20.0% |
| !!! | GTATATTGCATTTTATATGT+AGG | + | chr3_1:90953522-90953541 | None:intergenic | 20.0% |
| !! | CATAAAATAATACAGCATAT+TGG | - | chr3_1:90953587-90953606 | Msa0387110:CDS | 20.0% |
| !! | CACGATTTATATTTGTATAT+AGG | + | chr3_1:90953739-90953758 | None:intergenic | 20.0% |
| !!! | ATTTACGCTTTATTATATTC+CGG | + | chr3_1:90954309-90954328 | None:intergenic | 20.0% |
| ! | TTGGGTATTAAACAACATAA+AGG | + | chr3_1:90949842-90949861 | None:intergenic | 25.0% |
| !! | TAATCTTGGTCCTTTTAAAT+GGG | + | chr3_1:90950054-90950073 | None:intergenic | 25.0% |
| !! | TTAATCTTGGTCCTTTTAAA+TGG | + | chr3_1:90950055-90950074 | None:intergenic | 25.0% |
| ! | GCTCTAGTTAAAATAAACTT+TGG | + | chr3_1:90950096-90950115 | None:intergenic | 25.0% |
| ! | TCAGTGAAGATTTGTAAATT+AGG | + | chr3_1:90950142-90950161 | None:intergenic | 25.0% |
| !!! | TCATTGTTATTTTCTGTTGA+TGG | + | chr3_1:90950174-90950193 | None:intergenic | 25.0% |
| !!! | TTTTTTATGGCTAATAACGA+AGG | - | chr3_1:90950265-90950284 | Msa0387110:intron | 25.0% |
| !!! | TTAAGCTTTTTCAAAGTAGA+TGG | - | chr3_1:90950488-90950507 | Msa0387110:intron | 25.0% |
| !! | TGTTTTATAACTATCTTCGA+AGG | - | chr3_1:90950938-90950957 | Msa0387110:intron | 25.0% |
| ! | ATTACCAAATGTGTGTTTAA+AGG | - | chr3_1:90951323-90951342 | Msa0387110:CDS | 25.0% |
| ! | TTTATTGTGGAAAAATAGTG+GGG | + | chr3_1:90951352-90951371 | None:intergenic | 25.0% |
| ! | GTTTATTGTGGAAAAATAGT+GGG | + | chr3_1:90951353-90951372 | None:intergenic | 25.0% |
| ! | ACTTAATCAAACATTGAGAT+TGG | + | chr3_1:90951513-90951532 | None:intergenic | 25.0% |
| ! | ATGAATTATCACATCCAAAT+TGG | - | chr3_1:90951566-90951585 | Msa0387110:intron | 25.0% |
| !! | AAGAGACATTTTATGTGTTA+GGG | + | chr3_1:90951920-90951939 | None:intergenic | 25.0% |
| !! | AAAGAGACATTTTATGTGTT+AGG | + | chr3_1:90951921-90951940 | None:intergenic | 25.0% |
| ! | TGTACTTAAAAGATACAAGA+TGG | - | chr3_1:90951956-90951975 | Msa0387110:intron | 25.0% |
| ! | TGGTTAATAGACACAAAATA+AGG | + | chr3_1:90952224-90952243 | None:intergenic | 25.0% |
| ! | TATTAATATATGCAGAGGTA+TGG | - | chr3_1:90952657-90952676 | Msa0387110:intron | 25.0% |
| !! | ATTAATATATGCAGAGGTAT+GGG | - | chr3_1:90952658-90952677 | Msa0387110:intron | 25.0% |
| ! | GACATATTTAGTCCAAAATT+TGG | + | chr3_1:90953053-90953072 | None:intergenic | 25.0% |
| ! | AATGAGTAATCTCGAAAATT+TGG | + | chr3_1:90953385-90953404 | None:intergenic | 25.0% |
| ! | ATAAATAACTCTCATTCTCA+AGG | + | chr3_1:90953414-90953433 | None:intergenic | 25.0% |
| ! | ACATAGAATGAAAGAGTTAT+TGG | - | chr3_1:90953562-90953581 | Msa0387110:CDS | 25.0% |
| ! | AGTAAAAATATTTCGTTGAG+TGG | + | chr3_1:90953616-90953635 | None:intergenic | 25.0% |
| ! | GTTAAACTTATTGTAGATGA+AGG | + | chr3_1:90953987-90954006 | None:intergenic | 25.0% |
| ! | GCATATAATTGCACTAATTA+CGG | + | chr3_1:90954254-90954273 | None:intergenic | 25.0% |
| ACAGAAAATACTAACTCCTA+CGG | - | chr3_1:90949655-90949674 | Msa0387110:three_prime_UTR | 30.0% | |
| TCTATAAAAACCAACCCATT+AGG | - | chr3_1:90949720-90949739 | Msa0387110:three_prime_UTR | 30.0% | |
| TATAGGAAGACAAGAAATGA+AGG | + | chr3_1:90949747-90949766 | None:intergenic | 30.0% | |
| AATTGCTAAAATCAACGAAG+AGG | - | chr3_1:90949906-90949925 | Msa0387110:CDS | 30.0% | |
| ATTGCTAAAATCAACGAAGA+GGG | - | chr3_1:90949907-90949926 | Msa0387110:CDS | 30.0% | |
| GGTATGATTAAACCCAAATA+AGG | + | chr3_1:90949934-90949953 | None:intergenic | 30.0% | |
| GTGAAGATTTGTAAATTAGG+TGG | + | chr3_1:90950139-90950158 | None:intergenic | 30.0% | |
| ! | ATGTTGCTATTCCACATTAT+TGG | - | chr3_1:90950564-90950583 | Msa0387110:intron | 30.0% |
| ! | TGTTGCTATTCCACATTATT+GGG | - | chr3_1:90950565-90950584 | Msa0387110:intron | 30.0% |
| AGTAGAAAATACTGTATCCT+GGG | + | chr3_1:90950638-90950657 | None:intergenic | 30.0% | |
| ACCTTGCATATATTATGCAT+TGG | - | chr3_1:90951069-90951088 | Msa0387110:intron | 30.0% | |
| ACCAATGCATAATATATGCA+AGG | + | chr3_1:90951073-90951092 | None:intergenic | 30.0% | |
| ! | GTTAAACCTTTATTTGTTGC+TGG | + | chr3_1:90951277-90951296 | None:intergenic | 30.0% |
| GTTTCCTTTAAACACACATT+TGG | + | chr3_1:90951330-90951349 | None:intergenic | 30.0% | |
| GGTTTATTGTGGAAAAATAG+TGG | + | chr3_1:90951354-90951373 | None:intergenic | 30.0% | |
| TTATCACATCCAAATTGGTA+AGG | - | chr3_1:90951571-90951590 | Msa0387110:intron | 30.0% | |
| TATCACATCCAAATTGGTAA+GGG | - | chr3_1:90951572-90951591 | Msa0387110:intron | 30.0% | |
| !! | TTTACATATATGGTACTGGT+TGG | + | chr3_1:90952948-90952967 | None:intergenic | 30.0% |
| AATCTCGAAAATTTGGTTGA+CGG | + | chr3_1:90953378-90953397 | None:intergenic | 30.0% | |
| ! | ACATTTTAAATGTGGAGAAG+TGG | - | chr3_1:90953473-90953492 | Msa0387110:CDS | 30.0% |
| ! | CATTTTAAATGTGGAGAAGT+GGG | - | chr3_1:90953474-90953493 | Msa0387110:CDS | 30.0% |
| ! | ATTTTAAATGTGGAGAAGTG+GGG | - | chr3_1:90953475-90953494 | Msa0387110:CDS | 30.0% |
| !!! | AGATTGTGTTTTGACGTTTT+TGG | - | chr3_1:90953689-90953708 | Msa0387110:intron | 30.0% |
| AATGTTGGATTGTCTATTTG+TGG | + | chr3_1:90953776-90953795 | None:intergenic | 30.0% | |
| AACTAAGCACATCATACAAT+AGG | - | chr3_1:90954388-90954407 | Msa0387110:five_prime_UTR | 30.0% | |
| CAAGAAATGAAGGACCTAAT+GGG | + | chr3_1:90949737-90949756 | None:intergenic | 35.0% | |
| ACAAGAAATGAAGGACCTAA+TGG | + | chr3_1:90949738-90949757 | None:intergenic | 35.0% | |
| TGTCTGGGTGTAGATAAAAA+TGG | - | chr3_1:90949774-90949793 | Msa0387110:three_prime_UTR | 35.0% | |
| ATAAAAATGGCAGCTACTCA+TGG | - | chr3_1:90949787-90949806 | Msa0387110:three_prime_UTR | 35.0% | |
| TAAAAATGGCAGCTACTCAT+GGG | - | chr3_1:90949788-90949807 | Msa0387110:three_prime_UTR | 35.0% | |
| ! | ACAACTCACGAATGCATTTT+GGG | + | chr3_1:90949860-90949879 | None:intergenic | 35.0% |
| GGGTCAAGTTCAAAAGAATT+TGG | + | chr3_1:90949955-90949974 | None:intergenic | 35.0% | |
| ! | GACAACATCATAGATTTTGC+AGG | - | chr3_1:90950006-90950025 | Msa0387110:CDS | 35.0% |
| TTATGGCTAATAACGAAGGA+AGG | - | chr3_1:90950269-90950288 | Msa0387110:intron | 35.0% | |
| !! | AGATTTCGTTTTGGATCCAT+TGG | - | chr3_1:90950292-90950311 | Msa0387110:intron | 35.0% |
| ACCAGTTATACTAGTCATGA+CGG | - | chr3_1:90950321-90950340 | Msa0387110:intron | 35.0% | |
| GTAGATGGAGTTGTTCATTA+CGG | - | chr3_1:90950503-90950522 | Msa0387110:intron | 35.0% | |
| TAGATGGAGTTGTTCATTAC+GGG | - | chr3_1:90950504-90950523 | Msa0387110:intron | 35.0% | |
| CAGTAGAAAATACTGTATCC+TGG | + | chr3_1:90950639-90950658 | None:intergenic | 35.0% | |
| !!! | CTATATCTCAAGCTAGCTTT+TGG | - | chr3_1:90950797-90950816 | Msa0387110:intron | 35.0% |
| TGCATAATATATGCAAGGTC+CGG | + | chr3_1:90951068-90951087 | None:intergenic | 35.0% | |
| TAGACACCAGCAACAAATAA+AGG | - | chr3_1:90951268-90951287 | Msa0387110:CDS | 35.0% | |
| ATTGAGAGAAACACACTTCA+CGG | - | chr3_1:90951613-90951632 | Msa0387110:intron | 35.0% | |
| AGAAAAATGACGTTAGTGCT+AGG | - | chr3_1:90952385-90952404 | Msa0387110:intron | 35.0% | |
| AGCGAATTGTATATTAACGG+TGG | - | chr3_1:90952606-90952625 | Msa0387110:intron | 35.0% | |
| GCGAATTGTATATTAACGGT+GGG | - | chr3_1:90952607-90952626 | Msa0387110:intron | 35.0% | |
| ACGTTACCACTAGAAAACAA+TGG | - | chr3_1:90952696-90952715 | Msa0387110:intron | 35.0% | |
| ! | TAGTCACCATTGTTTTCTAG+TGG | + | chr3_1:90952705-90952724 | None:intergenic | 35.0% |
| AAAACAATGGTGACTACACA+AGG | - | chr3_1:90952709-90952728 | Msa0387110:intron | 35.0% | |
| AAACAATGGTGACTACACAA+GGG | - | chr3_1:90952710-90952729 | Msa0387110:intron | 35.0% | |
| ACAATCATCTCAACAACCTT+TGG | - | chr3_1:90952799-90952818 | Msa0387110:intron | 35.0% | |
| TTGTTCAGGAATACCATCAA+CGG | + | chr3_1:90952847-90952866 | None:intergenic | 35.0% | |
| ! | TTGATGGTATTCCTGAACAA+AGG | - | chr3_1:90952847-90952866 | Msa0387110:intron | 35.0% |
| ATCTCGAAAATTTGGTTGAC+GGG | + | chr3_1:90953377-90953396 | None:intergenic | 35.0% | |
| ! | GACCTCACACATTTTAAATG+TGG | - | chr3_1:90953465-90953484 | Msa0387110:CDS | 35.0% |
| ! | CTCCACATTTAAAATGTGTG+AGG | + | chr3_1:90953470-90953489 | None:intergenic | 35.0% |
| ! | GCATTTTATATGTAGGGGTT+GGG | + | chr3_1:90953515-90953534 | None:intergenic | 35.0% |
| ! | TGCATTTTATATGTAGGGGT+TGG | + | chr3_1:90953516-90953535 | None:intergenic | 35.0% |
| TTGGATTGTCTATTTGTGGT+CGG | + | chr3_1:90953772-90953791 | None:intergenic | 35.0% | |
| CTCTTATATGCTTGCAACAA+AGG | - | chr3_1:90954041-90954060 | Msa0387110:intron | 35.0% | |
| TCATAACATAGTTCACCACT+TGG | + | chr3_1:90954215-90954234 | None:intergenic | 35.0% | |
| CATAGACAACAACTTTGTTC+TGG | - | chr3_1:90954275-90954294 | Msa0387110:exon | 35.0% | |
| ! | AAATGAAGGACCTAATGGGT+TGG | + | chr3_1:90949733-90949752 | None:intergenic | 40.0% |
| TTCCTATATTGCGTGTGTCT+GGG | - | chr3_1:90949759-90949778 | Msa0387110:three_prime_UTR | 40.0% | |
| ! | CACAACTCACGAATGCATTT+TGG | + | chr3_1:90949861-90949880 | None:intergenic | 40.0% |
| ! | AACGAAGAGGGTCCTTATTT+GGG | - | chr3_1:90949919-90949938 | Msa0387110:CDS | 40.0% |
| !! | AGCCTGGATTTTGAAGAAGA+GGG | + | chr3_1:90949975-90949994 | None:intergenic | 40.0% |
| !! | TAGCCTGGATTTTGAAGAAG+AGG | + | chr3_1:90949976-90949995 | None:intergenic | 40.0% |
| TCTATTCCGGCCCATTTAAA+AGG | - | chr3_1:90950041-90950060 | Msa0387110:CDS | 40.0% | |
| ! | GAAGGAAGGAGATTTCGTTT+TGG | - | chr3_1:90950283-90950302 | Msa0387110:intron | 40.0% |
| !! | TATAACTGGTTTGTCGCCAA+TGG | + | chr3_1:90950311-90950330 | None:intergenic | 40.0% |
| CCAGTTATACTAGTCATGAC+GGG | - | chr3_1:90950322-90950341 | Msa0387110:intron | 40.0% | |
| TCCACATTATTGGGCTCATT+TGG | - | chr3_1:90950574-90950593 | Msa0387110:intron | 40.0% | |
| TACAGTCCACAATAATTCCC+AGG | - | chr3_1:90950618-90950637 | Msa0387110:intron | 40.0% | |
| CTGTATCCTGGGAATTATTG+TGG | + | chr3_1:90950627-90950646 | None:intergenic | 40.0% | |
| !!! | CATTTTGGTGGTGTGAATTC+CGG | - | chr3_1:90951046-90951065 | Msa0387110:intron | 40.0% |
| GCTGGTGTCTATAATGACTA+GGG | + | chr3_1:90951259-90951278 | None:intergenic | 40.0% | |
| TGCTGGTGTCTATAATGACT+AGG | + | chr3_1:90951260-90951279 | None:intergenic | 40.0% | |
| GATTGGACTCTCGAATTGAT+CGG | + | chr3_1:90951496-90951515 | None:intergenic | 40.0% | |
| CGATTTCTCCCTTACCAATT+TGG | + | chr3_1:90951583-90951602 | None:intergenic | 40.0% | |
| ! | ACACACTTCACGGTTCTAAT+TGG | - | chr3_1:90951623-90951642 | Msa0387110:intron | 40.0% |
| ! | CACACTTCACGGTTCTAATT+GGG | - | chr3_1:90951624-90951643 | Msa0387110:intron | 40.0% |
| TTAGTGCTAGGACAAATGTC+TGG | - | chr3_1:90952397-90952416 | Msa0387110:intron | 40.0% | |
| TCAACGGGAAAAATCTCTTC+TGG | + | chr3_1:90952831-90952850 | None:intergenic | 40.0% | |
| ! | GAAGAGATTTTTCCCGTTGA+TGG | - | chr3_1:90952831-90952850 | Msa0387110:intron | 40.0% |
| TGTTCAGGAATACCATCAAC+GGG | + | chr3_1:90952846-90952865 | None:intergenic | 40.0% | |
| AACAAAGGCAACATGCTCTT+TGG | - | chr3_1:90952862-90952881 | Msa0387110:intron | 40.0% | |
| ACAAAGGCAACATGCTCTTT+GGG | - | chr3_1:90952863-90952882 | Msa0387110:intron | 40.0% | |
| ACGGTAGTACTTGGAATCAA+CGG | + | chr3_1:90952892-90952911 | None:intergenic | 40.0% | |
| TTTGGCAATACGGTAGTACT+TGG | + | chr3_1:90952901-90952920 | None:intergenic | 40.0% | |
| !!! | CCTCGAGTTTTTTGGCAATA+CGG | + | chr3_1:90952911-90952930 | None:intergenic | 40.0% |
| TTGCCAAAAAACTCGAGGTA+TGG | - | chr3_1:90952913-90952932 | Msa0387110:intron | 40.0% | |
| !!! | AGACCATACCTCGAGTTTTT+TGG | + | chr3_1:90952919-90952938 | None:intergenic | 40.0% |
| AAAAACTCGAGGTATGGTCT+AGG | - | chr3_1:90952919-90952938 | Msa0387110:intron | 40.0% | |
| TAAGTTTAACGTGAGTCCAG+TGG | - | chr3_1:90953997-90954016 | Msa0387110:intron | 40.0% | |
| GATTCCCTTCATTGCTATCA+GGG | - | chr3_1:90954063-90954082 | Msa0387110:CDS | 40.0% | |
| TATCAGGGCTCTTTCTGATT+TGG | - | chr3_1:90954078-90954097 | Msa0387110:CDS | 40.0% | |
| GACAACAACTTTGTTCTGGT+TGG | - | chr3_1:90954279-90954298 | Msa0387110:exon | 40.0% | |
| CTTCCTATATTGCGTGTGTC+TGG | - | chr3_1:90949758-90949777 | Msa0387110:three_prime_UTR | 45.0% | |
| CAACGAAGAGGGTCCTTATT+TGG | - | chr3_1:90949918-90949937 | Msa0387110:CDS | 45.0% | |
| GACCCTCTTCTTCAAAATCC+AGG | - | chr3_1:90949970-90949989 | Msa0387110:CDS | 45.0% | |
| TTGTCACTAGCAGTATAGCC+TGG | + | chr3_1:90949991-90950010 | None:intergenic | 45.0% | |
| GTAAGTGCATGCGTCTATTC+CGG | - | chr3_1:90950028-90950047 | Msa0387110:CDS | 45.0% | |
| ! | CTTGGTCCTTTTAAATGGGC+CGG | + | chr3_1:90950050-90950069 | None:intergenic | 45.0% |
| AGAGCTGCACCTAGTAAACA+AGG | - | chr3_1:90950111-90950130 | Msa0387110:CDS | 45.0% | |
| GAGCTGCACCTAGTAAACAA+GGG | - | chr3_1:90950112-90950131 | Msa0387110:CDS | 45.0% | |
| ! | TAGGTGGTCCCTTGTTTACT+AGG | + | chr3_1:90950123-90950142 | None:intergenic | 45.0% |
| CCCGTCATGACTAGTATAAC+TGG | + | chr3_1:90950325-90950344 | None:intergenic | 45.0% | |
| GTTGTTCATTACGGGATTGC+TGG | - | chr3_1:90950512-90950531 | Msa0387110:intron | 45.0% | |
| GCAAACCCTTCCTTGCATAT+CGG | - | chr3_1:90950539-90950558 | Msa0387110:intron | 45.0% | |
| CATCTCCGATATGCAAGGAA+GGG | + | chr3_1:90950547-90950566 | None:intergenic | 45.0% | |
| ACATCTCCGATATGCAAGGA+AGG | + | chr3_1:90950548-90950567 | None:intergenic | 45.0% | |
| AGCAACATCTCCGATATGCA+AGG | + | chr3_1:90950552-90950571 | None:intergenic | 45.0% | |
| GCCAAATGAGCCCAATAATG+TGG | + | chr3_1:90950578-90950597 | None:intergenic | 45.0% | |
| ATTGGGCTCATTTGGCACTT+TGG | - | chr3_1:90950582-90950601 | Msa0387110:intron | 45.0% | |
| CGTCTCATAACTTACCTCTC+AGG | - | chr3_1:90952426-90952445 | Msa0387110:intron | 45.0% | |
| ! | TATATGCAGAGGTATGGGCA+AGG | - | chr3_1:90952663-90952682 | Msa0387110:intron | 45.0% |
| GTCAGCAGCACTTATGTTTG+AGG | + | chr3_1:90952766-90952785 | None:intergenic | 45.0% | |
| ! | TCTCTTCTGGTTGGTACCAA+AGG | + | chr3_1:90952818-90952837 | None:intergenic | 45.0% |
| CGGGAAAAATCTCTTCTGGT+TGG | + | chr3_1:90952827-90952846 | None:intergenic | 45.0% | |
| AGAGCATGTTGCCTTTGTTC+AGG | + | chr3_1:90952861-90952880 | None:intergenic | 45.0% | |
| GGTAGTACTTGGAATCAACG+GGG | + | chr3_1:90952890-90952909 | None:intergenic | 45.0% | |
| CGGTAGTACTTGGAATCAAC+GGG | + | chr3_1:90952891-90952910 | None:intergenic | 45.0% | |
| CCGTATTGCCAAAAAACTCG+AGG | - | chr3_1:90952908-90952927 | Msa0387110:intron | 45.0% | |
| GTCTGTGAGCTTAGCTCATT+TGG | + | chr3_1:90953544-90953563 | None:intergenic | 45.0% | |
| ATGCTTGACAACGACACCAA+AGG | - | chr3_1:90953901-90953920 | Msa0387110:intron | 45.0% | |
| CTGTCTACAAGCACAACCTT+TGG | + | chr3_1:90953920-90953939 | None:intergenic | 45.0% | |
| AAGGTTGTGCTTGTAGACAG+AGG | - | chr3_1:90953920-90953939 | Msa0387110:intron | 45.0% | |
| TAGACAGAGGAACAAGTGCA+GGG | - | chr3_1:90953933-90953952 | Msa0387110:intron | 45.0% | |
| GGATTCCCTTCATTGCTATC+AGG | - | chr3_1:90954062-90954081 | Msa0387110:CDS | 45.0% | |
| AGAGCCCTGATAGCAATGAA+GGG | + | chr3_1:90954070-90954089 | None:intergenic | 45.0% | |
| AAGAGCCCTGATAGCAATGA+AGG | + | chr3_1:90954071-90954090 | None:intergenic | 45.0% | |
| AATGACCACAGCAACAGAGT+TGG | + | chr3_1:90954161-90954180 | None:intergenic | 45.0% | |
| ACATAGTTCACCACTTGGAG+TGG | + | chr3_1:90954210-90954229 | None:intergenic | 45.0% | |
| ! | CTTTGTTCTGGTTGGTTGTC+CGG | - | chr3_1:90954287-90954306 | Msa0387110:five_prime_UTR | 45.0% |
| !! | GATTATTTAATATTAATTAT+TGG | - | chr3_1:90950380-90950399 | Msa0387110:intron | 5.0% |
| !!! | ATCTTTAAAATTATAAATTT+AGG | - | chr3_1:90951793-90951812 | Msa0387110:intron | 5.0% |
| !! | TAAAAAAAAAAAATATTTAC+AGG | + | chr3_1:90952025-90952044 | None:intergenic | 5.0% |
| !!! | ATAAAAAAAAATCATATTTT+TGG | + | chr3_1:90953196-90953215 | None:intergenic | 5.0% |
| AGAATGAAGGGTAACCCCCT+TGG | + | chr3_1:90949696-90949715 | None:intergenic | 50.0% | |
| CACCCAGACACACGCAATAT+AGG | + | chr3_1:90949764-90949783 | None:intergenic | 50.0% | |
| ! | AGTCATGACGGGATTGAGTG+TGG | - | chr3_1:90950333-90950352 | Msa0387110:intron | 50.0% |
| GGGATTGAGTGTGGTACGTA+TGG | - | chr3_1:90950342-90950361 | Msa0387110:intron | 50.0% | |
| !! | CTCATTTGGCACTTTGGAGC+TGG | - | chr3_1:90950588-90950607 | Msa0387110:intron | 50.0% |
| CTGCGTGAGCTTAACTCAGT+TGG | + | chr3_1:90951100-90951119 | None:intergenic | 50.0% | |
| GAGTTAAGCTCACGCAGACT+TGG | - | chr3_1:90951103-90951122 | Msa0387110:intron | 50.0% | |
| GTGACTACACAAGGGACGTA+GGG | - | chr3_1:90952718-90952737 | Msa0387110:intron | 50.0% | |
| GTAGACAGAGGAACAAGTGC+AGG | - | chr3_1:90953932-90953951 | Msa0387110:intron | 50.0% | |
| TAACGTGAGTCCAGTGGACA+TGG | - | chr3_1:90954003-90954022 | Msa0387110:intron | 50.0% | |
| GATGCACTTTCCATGTCCAC+TGG | + | chr3_1:90954016-90954035 | None:intergenic | 50.0% | |
| ! | GGACATGGAAAGTGCATCAG+TGG | - | chr3_1:90954018-90954037 | Msa0387110:intron | 50.0% |
| !! | AGGGCTCTTTCTGATTTGGC+TGG | - | chr3_1:90954082-90954101 | Msa0387110:CDS | 50.0% |
| !! | GCTCTTTCTGATTTGGCTGG+CGG | - | chr3_1:90954085-90954104 | Msa0387110:CDS | 50.0% |
| !! | TGAGAAGGTATCAGCCTCGT+TGG | + | chr3_1:90954125-90954144 | None:intergenic | 50.0% |
| ! | CACAGCAACAGAGTTGGTTG+CGG | + | chr3_1:90954155-90954174 | None:intergenic | 50.0% |
| TGTCATCACACCACTCCAAG+TGG | - | chr3_1:90954197-90954216 | Msa0387110:CDS | 50.0% | |
| !! | TTTGGCACTTTGGAGCTGGC+AGG | - | chr3_1:90950592-90950611 | Msa0387110:intron | 55.0% |
| GCTCTCACGTCGTCATTGCT+AGG | - | chr3_1:90952448-90952467 | Msa0387110:intron | 55.0% | |
| GGTGACTACACAAGGGACGT+AGG | - | chr3_1:90952717-90952736 | Msa0387110:intron | 55.0% | |
| ! | ATGTGGAGAAGTGGGGTGTC+AGG | - | chr3_1:90953482-90953501 | Msa0387110:CDS | 55.0% |
| ! | TGTGGAGAAGTGGGGTGTCA+GGG | - | chr3_1:90953483-90953502 | Msa0387110:CDS | 55.0% |
| !! | CTTTCTGATTTGGCTGGCGG+CGG | - | chr3_1:90954088-90954107 | Msa0387110:CDS | 55.0% |
| ATCAGCCTCGTTGGACTCTG+CGG | + | chr3_1:90954116-90954135 | None:intergenic | 55.0% | |
| GGCTGATACCTTCTCACCAC+TGG | - | chr3_1:90954129-90954148 | Msa0387110:CDS | 55.0% | |
| CGCAACCAACTCTGTTGCTG+TGG | - | chr3_1:90954153-90954172 | Msa0387110:CDS | 55.0% | |
| GCCTAGCCAGACCAAGCCAA+GGG | - | chr3_1:90949677-90949696 | Msa0387110:three_prime_UTR | 60.0% | |
| CCTAGCCAGACCAAGCCAAG+GGG | - | chr3_1:90949678-90949697 | Msa0387110:three_prime_UTR | 60.0% | |
| CTAGCCAGACCAAGCCAAGG+GGG | - | chr3_1:90949679-90949698 | Msa0387110:three_prime_UTR | 60.0% | |
| !! | GTAACCCCCTTGGCTTGGTC+TGG | + | chr3_1:90949686-90949705 | None:intergenic | 60.0% |
| GAAGGGTAACCCCCTTGGCT+TGG | + | chr3_1:90949691-90949710 | None:intergenic | 60.0% | |
| TGACGACGTGAGAGCCTGAG+AGG | + | chr3_1:90952443-90952462 | None:intergenic | 60.0% | |
| ! | ACAGAGTTGGTTGCGGCCAG+TGG | + | chr3_1:90954148-90954167 | None:intergenic | 60.0% |
| GCTTGGTCTGGCTAGGCCGT+AGG | + | chr3_1:90949674-90949693 | None:intergenic | 65.0% | |
| GGCCTAGCCAGACCAAGCCA+AGG | - | chr3_1:90949676-90949695 | Msa0387110:three_prime_UTR | 65.0% | |
| !! | CCCCTTGGCTTGGTCTGGCT+AGG | + | chr3_1:90949681-90949700 | None:intergenic | 65.0% |
| GGTTGCGGCCAGTGGTGAGA+AGG | + | chr3_1:90954140-90954159 | None:intergenic | 65.0% | |
| CGGCACCGCAGAGTCCAACG+AGG | - | chr3_1:90954108-90954127 | Msa0387110:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 90949636 | 90954436 | 90949636 | ID=Msa0387110;Name=Msa0387110 |
| chr3_1 | mRNA | 90949636 | 90954436 | 90949636 | ID=Msa0387110-mRNA-1;Parent=Msa0387110;Name=Msa0387110-mRNA-1;_AED=0.05;_eAED=0.05;_QI=157|1|1|1|1|1|5|214|357 |
| chr3_1 | exon | 90949636 | 90950206 | 90949636 | ID=Msa0387110-mRNA-1:exon:25234;Parent=Msa0387110-mRNA-1 |
| chr3_1 | exon | 90951143 | 90951400 | 90951143 | ID=Msa0387110-mRNA-1:exon:25233;Parent=Msa0387110-mRNA-1 |
| chr3_1 | exon | 90953459 | 90953614 | 90953459 | ID=Msa0387110-mRNA-1:exon:25232;Parent=Msa0387110-mRNA-1 |
| chr3_1 | exon | 90953718 | 90953785 | 90953718 | ID=Msa0387110-mRNA-1:exon:25231;Parent=Msa0387110-mRNA-1 |
| chr3_1 | exon | 90954045 | 90954436 | 90954045 | ID=Msa0387110-mRNA-1:exon:25230;Parent=Msa0387110-mRNA-1 |
| chr3_1 | five_prime_UTR | 90954280 | 90954436 | 90954280 | ID=Msa0387110-mRNA-1:five_prime_utr;Parent=Msa0387110-mRNA-1 |
| chr3_1 | CDS | 90954045 | 90954279 | 90954045 | ID=Msa0387110-mRNA-1:cds;Parent=Msa0387110-mRNA-1 |
| chr3_1 | CDS | 90953718 | 90953785 | 90953718 | ID=Msa0387110-mRNA-1:cds;Parent=Msa0387110-mRNA-1 |
| chr3_1 | CDS | 90953459 | 90953614 | 90953459 | ID=Msa0387110-mRNA-1:cds;Parent=Msa0387110-mRNA-1 |
| chr3_1 | CDS | 90951143 | 90951400 | 90951143 | ID=Msa0387110-mRNA-1:cds;Parent=Msa0387110-mRNA-1 |
| chr3_1 | CDS | 90949850 | 90950206 | 90949850 | ID=Msa0387110-mRNA-1:cds;Parent=Msa0387110-mRNA-1 |
| chr3_1 | three_prime_UTR | 90949636 | 90949849 | 90949636 | ID=Msa0387110-mRNA-1:three_prime_utr;Parent=Msa0387110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
