AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1348730


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1348730 MtrunA17_Chr3g0140051 96.639 357 12 0 113 469 1 357 0.0 716
Msa1348730 MtrunA17_Chr3g0140051 81.395 86 14 1 27 110 154 239 4.31e-41 150
Msa1348730 MtrunA17_Chr3g0140061 96.317 353 13 0 113 465 1 353 0.0 706
Msa1348730 MtrunA17_Chr3g0140061 82.558 86 13 1 27 110 154 239 8.56e-42 152
Msa1348730 MtrunA17_Chr6g0486081 52.698 315 140 4 150 462 29 336 7.34e-120 353
Msa1348730 MtrunA17_Chr6g0486081 48.810 84 39 1 27 110 147 226 5.71e-21 94.0
Msa1348730 MtrunA17_Chr6g0486101 50.794 315 141 4 150 462 30 332 2.14e-114 340
Msa1348730 MtrunA17_Chr6g0486101 51.389 72 35 0 39 110 151 222 1.15e-17 84.0
Msa1348730 MtrunA17_Chr6g0486091 49.524 315 145 4 150 462 31 333 1.04e-109 328
Msa1348730 MtrunA17_Chr6g0486091 48.611 72 37 0 39 110 152 223 2.89e-16 79.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1348730 AT4G28940.1 57.321 321 126 3 150 468 33 344 1.75e-136 397
Msa1348730 AT4G28940.1 57.143 84 30 1 27 110 151 228 6.90e-26 108
Msa1348730 AT4G28940.2 58.621 261 99 2 208 468 1 252 6.60e-111 328
Msa1348730 AT4G28940.2 57.143 84 30 1 27 110 59 136 9.77e-27 108
Msa1348730 AT4G24340.1 37.261 314 174 5 151 462 43 335 1.34e-64 212
Msa1348730 AT4G24350.1 36.306 314 180 6 151 462 38 333 3.03e-62 206
Msa1348730 AT4G24350.2 34.444 270 159 5 151 418 38 291 3.97e-49 170
Msa1348730 AT4G24350.3 36.667 240 134 5 223 462 1 222 4.69e-47 162
Msa1348730 AT4G24350.4 34.634 205 118 4 214 418 9 197 1.25e-36 134

Find 119 sgRNAs with CRISPR-Local

Find 369 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACGAAGAGGGTCCTTATT+TGG 0.132523 tig0010472:+16197 Msa1348730:CDS
CACAACTCACGAATGCATTT+TGG 0.147904 tig0010472:-14073 None:intergenic
CACAACTCACGAATGCATTT+TGG 0.147904 tig0010472:-16137 None:intergenic
ATGTTGCTATTCCACATTAT+TGG 0.227186 tig0010472:+16843 Msa1348730:CDS
GGATTCCCTTCATTGCTATC+AGG 0.272090 tig0010472:+20339 Msa1348730:CDS
AACAAAGGCAACATGCTCTT+TGG 0.272171 tig0010472:+15100 Msa1348730:CDS
AACAAAGGCAACATGCTCTT+TGG 0.272171 tig0010472:+19141 Msa1348730:CDS
TGTTGCTATTCCACATTATT+GGG 0.272480 tig0010472:+16844 Msa1348730:CDS
GGTATGATTAAACCCAAATA+AGG 0.283272 tig0010472:-16210 None:intergenic
GGGTCAAGTTCAAAAGAATT+TGG 0.317467 tig0010472:-16231 None:intergenic
CTTTGTTCTGGTTGGTTGTC+CGG 0.319062 tig0010472:+20564 Msa1348730:three_prime_UTR
TATCAGGGCTCTTTCTGATT+TGG 0.324485 tig0010472:+20355 Msa1348730:CDS
CTCATTTGGCACTTTGGAGC+TGG 0.328354 tig0010472:+16867 Msa1348730:CDS
TCCACATTATTGGGCTCATT+TGG 0.331452 tig0010472:+16853 Msa1348730:CDS
TTGGGTATTAAACAACATAA+AGG 0.346307 tig0010472:-16118 None:intergenic
AGAGCATGTTGCCTTTGTTC+AGG 0.348607 tig0010472:-15096 None:intergenic
AGAGCATGTTGCCTTTGTTC+AGG 0.348607 tig0010472:-19137 None:intergenic
AACGAAGAGGGTCCTTATTT+GGG 0.350130 tig0010472:+16198 Msa1348730:CDS
GCATATAATTGCACTAATTA+CGG 0.358763 tig0010472:-20528 None:intergenic
CATAGACAACAACTTTGTTC+TGG 0.367043 tig0010472:+20552 Msa1348730:three_prime_UTR
ACAACCAACTCAACAATCTA+TGG 0.372643 tig0010472:+15037 Msa1348730:CDS
GTTGTTCATTACGGGATTGC+TGG 0.372697 tig0010472:+16791 Msa1348730:CDS
TAGATGGAGTTGTTCATTAC+GGG 0.375885 tig0010472:+16783 Msa1348730:CDS
CCAACGGGGAAAATCTCTTC+TGG 0.376793 tig0010472:-15066 None:intergenic
CCCGTCATGACTAGTATAAC+TGG 0.382128 tig0010472:-16601 None:intergenic
CGGTAGTACTTGGAATCAAC+GGG 0.404829 tig0010472:-19167 None:intergenic
AGGTAGTACTTGGAATCAAC+GGG 0.405005 tig0010472:-15126 None:intergenic
ATTGGGCTCATTTGGCACTT+TGG 0.416383 tig0010472:+16861 Msa1348730:CDS
CTGTCTACAAGCACAACCTT+TGG 0.418437 tig0010472:-20194 None:intergenic
TGTTCAGGAATGCCACCAAC+GGG 0.418889 tig0010472:-15081 None:intergenic
GTCAGCAGCACTTATGTTTG+AGG 0.420611 tig0010472:-19042 None:intergenic
AGGGCTCTTTCTGATTTGGC+TGG 0.421164 tig0010472:+20359 Msa1348730:CDS
GTAGATGGAGTTGTTCATTA+CGG 0.424060 tig0010472:+16782 Msa1348730:CDS
ATTTACGCTTTATTATATTC+CGG 0.425732 tig0010472:-20583 None:intergenic
ACAAAGGCAACATGCTCTTT+GGG 0.425980 tig0010472:+15101 Msa1348730:CDS
ACAAAGGCAACATGCTCTTT+GGG 0.425980 tig0010472:+19142 Msa1348730:CDS
ACAATCATCTCAACAACCTT+TGG 0.430065 tig0010472:+19078 Msa1348730:CDS
TTTGGCAATACGGTAGTACT+TGG 0.430210 tig0010472:-19177 None:intergenic
ATTGTATATGTGCAGAGGTA+TGG 0.431241 tig0010472:+14901 Msa1348730:intron
GAAGGAAGGAGATTTCGTTT+TGG 0.431427 tig0010472:+16562 Msa1348730:intron
CTTTCTGATTTGGCTGGCGG+CGG 0.432701 tig0010472:+20365 Msa1348730:CDS
CTCTTATATGCTTGCAACAA+AGG 0.444049 tig0010472:+20318 Msa1348730:CDS
TTTGGCAATAAGGTAGTACT+TGG 0.451990 tig0010472:-15136 None:intergenic
GCAAACCCTTCCTTGCATAT+CGG 0.458109 tig0010472:+16818 Msa1348730:CDS
TCTAAGGGTAACGTGTCATC+AGG 0.462269 tig0010472:-14931 None:intergenic
TATTAATATATGCAGAGGTA+TGG 0.462558 tig0010472:+18936 Msa1348730:intron
AACTAAGCACATCATACAAT+AGG 0.463759 tig0010472:+20665 Msa1348730:three_prime_UTR
GTTAAACTTATTGTAGATGA+AGG 0.469473 tig0010472:-20261 None:intergenic
GACAACAACTTTGTTCTGGT+TGG 0.479422 tig0010472:+20556 Msa1348730:three_prime_UTR
TGTTCAGGAATACCATCAAC+GGG 0.480731 tig0010472:-19122 None:intergenic
TTTGGCACTTTGGAGCTGGC+AGG 0.483139 tig0010472:+16871 Msa1348730:CDS
TCTCTTCTGGTTGGTACCAA+AGG 0.484946 tig0010472:-19094 None:intergenic
GGTACCATAGATTGTTGAGT+TGG 0.488750 tig0010472:-15041 None:intergenic
GGAGATTACACAAGGGAAGT+AGG 0.493178 tig0010472:+14961 Msa1348730:CDS
TTGTATATGTGCAGAGGTAT+GGG 0.494546 tig0010472:+14902 Msa1348730:intron
AAGAGCCCTGATAGCAATGA+AGG 0.499791 tig0010472:-20345 None:intergenic
TTTACATCAAACTTAAGTGC+TGG 0.499968 tig0010472:+15003 Msa1348730:CDS
ATTAATATATGCAGAGGTAT+GGG 0.510376 tig0010472:+18937 Msa1348730:intron
TATAACTGGTTTGTCGCCAA+TGG 0.510741 tig0010472:-16587 None:intergenic
GACCCTCTTCTTCAAAATCC+AGG 0.523176 tig0010472:+16249 Msa1348730:CDS
AAGGTAGTACTTGGAATCAA+CGG 0.527662 tig0010472:-15127 None:intergenic
GGCTGATACCTTCTCACCAC+TGG 0.530809 tig0010472:+20406 Msa1348730:CDS
ATAATAATGGCAGCTACTCA+TGG 0.532384 tig0010472:+16066 Msa1348730:CDS
GAGATTACACAAGGGAAGTA+GGG 0.535301 tig0010472:+14962 Msa1348730:CDS
ACAGAGTTGGTTGCGGCCAG+TGG 0.543909 tig0010472:-20422 None:intergenic
GATGCACTTTCCATGTCCAC+TGG 0.544627 tig0010472:-20290 None:intergenic
GTAGACAGAGGAACAAGTGC+AGG 0.547219 tig0010472:+20209 Msa1348730:CDS
GATTCCCTTCATTGCTATCA+GGG 0.551884 tig0010472:+20340 Msa1348730:CDS
TTGTCACTAGCAGTATAGCC+TGG 0.553691 tig0010472:-16267 None:intergenic
TAACGTGAGTCCAGTGGACA+TGG 0.555563 tig0010472:+20280 Msa1348730:CDS
ACCAGTTATACTAGTCATGA+CGG 0.559335 tig0010472:+16600 Msa1348730:CDS
ACGGTAGTACTTGGAATCAA+CGG 0.561307 tig0010472:-19168 None:intergenic
CGCAACCAACTCTGTTGCTG+TGG 0.562029 tig0010472:+20430 Msa1348730:CDS
TTGTTCAGGAATGCCACCAA+CGG 0.573621 tig0010472:-15082 None:intergenic
AAAACAATGGTGACTACACA+AGG 0.576219 tig0010472:+18988 Msa1348730:CDS
GCCAAATGAGCCCAATAATG+TGG 0.579248 tig0010472:-16854 None:intergenic
ACATCTCCGATATGCAAGGA+AGG 0.579860 tig0010472:-16824 None:intergenic
TGAGAAGGTATCAGCCTCGT+TGG 0.580666 tig0010472:-20399 None:intergenic
GGTTGCGGCCAGTGGTGAGA+AGG 0.583884 tig0010472:-20414 None:intergenic
TAATAATGGCAGCTACTCAT+GGG 0.584057 tig0010472:+16067 Msa1348730:CDS
TTGTTCAGGAATACCATCAA+CGG 0.585225 tig0010472:-19123 None:intergenic
GGACATGGAAAGTGCATCAG+TGG 0.586546 tig0010472:+20295 Msa1348730:CDS
TGTCTGGGTGTAGATAATAA+TGG 0.587493 tig0010472:+16053 Msa1348730:intron
GTGACTACACAAGGGACGTA+GGG 0.588370 tig0010472:+18997 Msa1348730:CDS
CGGGGAAAATCTCTTCTGGT+TGG 0.595557 tig0010472:-15062 None:intergenic
TCATAACATAGTTCACCACT+TGG 0.603986 tig0010472:-20489 None:intergenic
GCTCTTTCTGATTTGGCTGG+CGG 0.606832 tig0010472:+20362 Msa1348730:CDS
CCAGTTATACTAGTCATGAC+GGG 0.608599 tig0010472:+16601 Msa1348730:CDS
CACAGCAACAGAGTTGGTTG+CGG 0.609393 tig0010472:-20429 None:intergenic
ATTGCTAAAATCAACGAAGA+GGG 0.614781 tig0010472:+16186 Msa1348730:CDS
ATCAGCCTCGTTGGACTCTG+CGG 0.618468 tig0010472:-20390 None:intergenic
AGCAACATCTCCGATATGCA+AGG 0.618530 tig0010472:-16828 None:intergenic
AATGACCACAGCAACAGAGT+TGG 0.629425 tig0010472:-20435 None:intergenic
ATGTGCAGAGGTATGGGCAA+GGG 0.632644 tig0010472:+14908 Msa1348730:intron
AATTGCTAAAATCAACGAAG+AGG 0.634351 tig0010472:+16185 Msa1348730:CDS
ACATAGTTCACCACTTGGAG+TGG 0.638822 tig0010472:-20484 None:intergenic
TATGTGCAGAGGTATGGGCA+AGG 0.643104 tig0010472:+14907 Msa1348730:intron
ACGTTACCCTTAGAAAACAA+TGG 0.644025 tig0010472:+14940 Msa1348730:CDS
ATGCTTGACAACGACACCAA+AGG 0.644624 tig0010472:+20178 Msa1348730:CDS
AGAGCCCTGATAGCAATGAA+GGG 0.645404 tig0010472:-20344 None:intergenic
GGTGACTACACAAGGGACGT+AGG 0.645883 tig0010472:+18996 Msa1348730:CDS
TTGGTGGCATTCCTGAACAA+AGG 0.647085 tig0010472:+15085 Msa1348730:CDS
TTGATGGTATTCCTGAACAA+AGG 0.648077 tig0010472:+19126 Msa1348730:CDS
CATCTCCGATATGCAAGGAA+GGG 0.651532 tig0010472:-16823 None:intergenic
TGTCATCACACCACTCCAAG+TGG 0.653556 tig0010472:+20474 Msa1348730:CDS
CAAGACTATTCTAACGTCAG+TGG 0.658347 tig0010472:-14015 None:intergenic
TAAGTTTAACGTGAGTCCAG+TGG 0.659074 tig0010472:+20274 Msa1348730:CDS
AGTCATGACGGGATTGAGTG+TGG 0.668616 tig0010472:+16612 Msa1348730:CDS
AAAACAATGGAGATTACACA+AGG 0.670651 tig0010472:+14953 Msa1348730:CDS
TAGACAGAGGAACAAGTGCA+GGG 0.675462 tig0010472:+20210 Msa1348730:CDS
TATATGCAGAGGTATGGGCA+AGG 0.693984 tig0010472:+18942 Msa1348730:intron
AAGGTTGTGCTTGTAGACAG+AGG 0.704702 tig0010472:+20197 Msa1348730:CDS
AAACAATGGAGATTACACAA+GGG 0.709853 tig0010472:+14954 Msa1348730:CDS
ACGTTACCACTAGAAAACAA+TGG 0.714437 tig0010472:+18975 Msa1348730:CDS
AAACAATGGTGACTACACAA+GGG 0.726560 tig0010472:+18989 Msa1348730:CDS
GTTCAGGAATGCCACCAACG+GGG 0.730088 tig0010472:-15080 None:intergenic
CGGCACCGCAGAGTCCAACG+AGG 0.744926 tig0010472:+20385 Msa1348730:CDS
GGTAGTACTTGGAATCAACG+GGG 0.827912 tig0010472:-19166 None:intergenic
GGTAGTACTTGGAATCAACG+GGG 0.836087 tig0010472:-15125 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTATTTTATTTTTTT+TGG - tig0010472:15426-15445 None:intergenic 0.0%
!!! AATATATATAATTTTAATTA+TGG - tig0010472:18522-18541 None:intergenic 0.0%
!!! TTTCATTTAAGATATATTTA+TGG - tig0010472:15208-15227 None:intergenic 10.0%
!! ATATATTGTAATAGAAAAAA+AGG - tig0010472:17301-17320 None:intergenic 10.0%
!!! TATTACAATATATAACATTT+TGG + tig0010472:17308-17327 Msa1348730:intron 10.0%
!!! TGTTTTAATAAAATTACTTT+TGG - tig0010472:17652-17671 None:intergenic 10.0%
!! TGTAATAAAGTATAAATTAT+AGG - tig0010472:17945-17964 None:intergenic 10.0%
!!! TATTGATAGTTTTTTTTTAA+GGG - tig0010472:18617-18636 None:intergenic 10.0%
!!! ATATTGATAGTTTTTTTTTA+AGG - tig0010472:18618-18637 None:intergenic 10.0%
!!! CTTTTTTTTTTATTCATTTT+TGG + tig0010472:18820-18839 Msa1348730:intron 10.0%
!! TTTAAGTAAAATTTAATCAA+AGG - tig0010472:19360-19379 None:intergenic 10.0%
!!! TTTTTTTAATGAAAATTTGA+AGG - tig0010472:19550-19569 None:intergenic 10.0%
!!! GAGTTATTTATTTTATTTTT+TGG + tig0010472:19701-19720 Msa1348730:intron 10.0%
!! AAAACAAAAATAAAATTACA+CGG + tig0010472:20090-20109 Msa1348730:intron 10.0%
!!! TTTTCTAAGTTAAAAATAGA+CGG - tig0010472:14441-14460 None:intergenic 15.0%
!!! AATTGTTGACTTTTTTTATT+AGG + tig0010472:14652-14671 Msa1348730:intron 15.0%
!! AATATTATAGATTTGTGAAA+TGG - tig0010472:15370-15389 None:intergenic 15.0%
!! AAATAGATAACTTTATATGA+GGG - tig0010472:15686-15705 None:intergenic 15.0%
!! TAAATAGATAACTTTATATG+AGG - tig0010472:15687-15706 None:intergenic 15.0%
!! GACTAAATGATTAATATTTA+TGG + tig0010472:15903-15922 Msa1348730:intron 15.0%
!! TCATATGTATAATTTAATCT+TGG - tig0010472:16347-16366 None:intergenic 15.0%
!!! TAATTTTCCTCTTTTTTTTA+TGG + tig0010472:16531-16550 Msa1348730:intron 15.0%
!! TAAATAAATTAAAGTTGAGT+TGG + tig0010472:17151-17170 Msa1348730:intron 15.0%
!! AAATAAATTAAAGTTGAGTT+GGG + tig0010472:17152-17171 Msa1348730:intron 15.0%
!! AAATGTTATACTATTATCAA+TGG + tig0010472:17264-17283 Msa1348730:intron 15.0%
!!! CATTTGGTAATATTAATTTA+AGG - tig0010472:17591-17610 None:intergenic 15.0%
!! TAACTCAATATAAAATGATA+TGG + tig0010472:17690-17709 Msa1348730:intron 15.0%
!! TAAAAAAAAACTAGATATTC+AGG + tig0010472:17740-17759 Msa1348730:intron 15.0%
!!! TAAAAAGAAAAGCTTTTTTA+TGG - tig0010472:18142-18161 None:intergenic 15.0%
!!! AATCATGTAGTTTTTTTTTT+AGG + tig0010472:18325-18344 Msa1348730:intron 15.0%
!!! ATCATGTAGTTTTTTTTTTA+GGG + tig0010472:18326-18345 Msa1348730:intron 15.0%
!!! TTTTATAATTAGTAACAAAC+AGG - tig0010472:18386-18405 None:intergenic 15.0%
!!! TAAAATCACTTTTCTTTTTA+AGG - tig0010472:18426-18445 None:intergenic 15.0%
!!! ATTGATAGTTTTTTTTTAAG+GGG - tig0010472:18616-18635 None:intergenic 15.0%
!! AGTTAATTAATTAACTATGA+TGG + tig0010472:18788-18807 Msa1348730:intron 15.0%
!! AATAATATTAATATATGCAG+AGG + tig0010472:18931-18950 Msa1348730:intron 15.0%
!!! TCTTTGAATTTTTACATATA+TGG - tig0010472:19237-19256 None:intergenic 15.0%
!!! TCAATTTTTACGTATAATTA+AGG - tig0010472:19285-19304 None:intergenic 15.0%
!!! ATTTTACTTAAATTTGAGAT+CGG + tig0010472:19368-19387 Msa1348730:intron 15.0%
!!! ACTAATATCGATTTTTATTA+TGG - tig0010472:19449-19468 None:intergenic 15.0%
!!! TATATTGCATTTTATATGTA+GGG - tig0010472:19799-19818 None:intergenic 15.0%
!!! AATATAAATCGTGTTTTTAT+TGG + tig0010472:20024-20043 Msa1348730:intron 15.0%
!! AAGAGATAAAAAAAAAATGT+TGG - tig0010472:20069-20088 None:intergenic 15.0%
!!! TTTTCGAATATATATTTTTC+AGG + tig0010472:20121-20140 Msa1348730:intron 15.0%
!! TTTCTAAGTTAAAAATAGAC+GGG - tig0010472:14440-14459 None:intergenic 20.0%
!!! ATGGAAAATGACAAATTTTT+GGG - tig0010472:14505-14524 None:intergenic 20.0%
!! TTAGGCTAATTAATATGATT+AGG + tig0010472:14670-14689 Msa1348730:intron 20.0%
!! TAGGCTAATTAATATGATTA+GGG + tig0010472:14671-14690 Msa1348730:intron 20.0%
!! TAAAGTTATTAATTAAGCGT+TGG - tig0010472:14702-14721 None:intergenic 20.0%
!!! AGGAAATTGTTTCTATAAAA+TGG - tig0010472:14778-14797 None:intergenic 20.0%
!!! TTTTACAAGAATTGATTTTG+AGG - tig0010472:14798-14817 None:intergenic 20.0%
!!! ATTTATCATCGCAATTTTAA+CGG - tig0010472:15294-15313 None:intergenic 20.0%
!! AATGAATGTTGGAAAATTAA+AGG - tig0010472:15465-15484 None:intergenic 20.0%
!! TTATCTTTCTTTAAATTGCA+AGG - tig0010472:15631-15650 None:intergenic 20.0%
!! AATAGATAACTTTATATGAG+GGG - tig0010472:15685-15704 None:intergenic 20.0%
!! TTTATAGAGAATAGAATGAA+GGG - tig0010472:15987-16006 None:intergenic 20.0%
!!! TTTTATAGAGAATAGAATGA+AGG - tig0010472:15988-16007 None:intergenic 20.0%
!! TGAAATTAATTAACTTTGCA+AGG + tig0010472:16470-16489 Msa1348730:intron 20.0%
!! TTATTAGCCATAAAAAAAAG+AGG - tig0010472:16541-16560 None:intergenic 20.0%
!!! TTTAATAGTTGAGATTTTGT+TGG - tig0010472:17116-17135 None:intergenic 20.0%
!!! AATAAATTAAAGTTGAGTTG+GGG + tig0010472:17153-17172 Msa1348730:intron 20.0%
!!! GTATAACATTTTAATTCGAA+GGG - tig0010472:17255-17274 None:intergenic 20.0%
!!! AGTATAACATTTTAATTCGA+AGG - tig0010472:17256-17275 None:intergenic 20.0%
!!! TACAATATATAACATTTTGG+TGG + tig0010472:17311-17330 Msa1348730:intron 20.0%
!! ATATTAATGTGATCGTATAT+TGG + tig0010472:17424-17443 Msa1348730:intron 20.0%
!! TTATAATGCAAAATAATACG+TGG + tig0010472:17461-17480 Msa1348730:intron 20.0%
!!! AAATTACTTTTGGTTTATTG+TGG - tig0010472:17642-17661 None:intergenic 20.0%
!!! ATTTTATTAAAACAGAAGTC+AGG + tig0010472:17658-17677 Msa1348730:intron 20.0%
!!! GTTTTACTCTTACTTTAAAT+TGG - tig0010472:17818-17837 None:intergenic 20.0%
!! ATTTATAGTTACATGCATAT+TGG + tig0010472:17974-17993 Msa1348730:intron 20.0%
!! TTTATAGTTACATGCATATT+GGG + tig0010472:17975-17994 Msa1348730:intron 20.0%
!!! TAGGTAAAGATTTTTTTAGA+TGG + tig0010472:18089-18108 Msa1348730:intron 20.0%
!!! AATATGCAATTTCTTTTTCT+TGG - tig0010472:18166-18185 None:intergenic 20.0%
!! TATTTACAGGTAATTTGATT+AGG - tig0010472:18290-18309 None:intergenic 20.0%
!!! CATTTTTCTGTGTTTTTTTT+TGG - tig0010472:18652-18671 None:intergenic 20.0%
!! TATCATGATTAATATATACG+TGG + tig0010472:18754-18773 Msa1348730:intron 20.0%
!! ATTAGCGAATTGTATATTAA+CGG + tig0010472:18882-18901 Msa1348730:intron 20.0%
!!! AATTTTTACATATATGGTAC+TGG - tig0010472:19231-19250 None:intergenic 20.0%
!!! AATGTTTTTGTTCCAAATTT+TGG + tig0010472:19317-19336 Msa1348730:intron 20.0%
!!! ATATTGCATTTTATATGTAG+GGG - tig0010472:19798-19817 None:intergenic 20.0%
!!! GTATATTGCATTTTATATGT+AGG - tig0010472:19800-19819 None:intergenic 20.0%
!! CATAAAATAATACAGCATAT+TGG + tig0010472:19865-19884 Msa1348730:intron 20.0%
!!! TAGGAGCATATTAAATAATT+AGG - tig0010472:19998-20017 None:intergenic 20.0%
!! CACGATTTATATTTGTATAT+AGG - tig0010472:20017-20036 None:intergenic 20.0%
!!! ATTTACGCTTTATTATATTC+CGG - tig0010472:20586-20605 None:intergenic 20.0%
!!! GAACACATTTTTAGCAAATA+AGG - tig0010472:14149-14168 None:intergenic 25.0%
! TAACAAAATTACTAATCGCA+TGG + tig0010472:14467-14486 Msa1348730:intron 25.0%
!! CATGGAAAATGACAAATTTT+TGG - tig0010472:14506-14525 None:intergenic 25.0%
! TAATTAATATGATTAGGGCT+GGG + tig0010472:14676-14695 Msa1348730:intron 25.0%
! AGATTAACGAATTGCATATT+TGG + tig0010472:14846-14865 Msa1348730:intron 25.0%
!! TAATCTCCATTGTTTTCTAA+GGG - tig0010472:14949-14968 None:intergenic 25.0%
!!! ATTACATACCTCTAGTTTTT+TGG - tig0010472:15157-15176 None:intergenic 25.0%
!! CTAGAGGTATGTAATTAATT+AGG + tig0010472:15162-15181 Msa1348730:intron 25.0%
!! CTTTATTTCTTTCTCTCTTA+AGG + tig0010472:15555-15574 Msa1348730:intron 25.0%
! GATAATGCATAATATATGCA+AGG - tig0010472:15745-15764 None:intergenic 25.0%
! TTGGGTATTAAACAACATAA+AGG - tig0010472:16121-16140 None:intergenic 25.0%
!! TAATCTTGGTCCTTTTAAAT+GGG - tig0010472:16333-16352 None:intergenic 25.0%
!! TTAATCTTGGTCCTTTTAAA+TGG - tig0010472:16334-16353 None:intergenic 25.0%
! GCTCTAGTTAAAATAAACTT+TGG - tig0010472:16375-16394 None:intergenic 25.0%
! TCAGTGAAGATTTGTAAATT+AGG - tig0010472:16421-16440 None:intergenic 25.0%
!!! TCATTGTTATTTTCTGTTGA+TGG - tig0010472:16453-16472 None:intergenic 25.0%
!!! TTTTTTATGGCTAATAACGA+AGG + tig0010472:16544-16563 Msa1348730:intron 25.0%
!!! TTAAGCTTTTTCAAAGTAGA+TGG + tig0010472:16767-16786 Msa1348730:CDS 25.0%
!! TGTTTTATAACTATCTTCGA+AGG + tig0010472:17215-17234 Msa1348730:intron 25.0%
! ATTACCAAATGTGTGTTTAA+AGG + tig0010472:17600-17619 Msa1348730:intron 25.0%
! TTTATTGTGGAAAAATAGTG+GGG - tig0010472:17629-17648 None:intergenic 25.0%
! GTTTATTGTGGAAAAATAGT+GGG - tig0010472:17630-17649 None:intergenic 25.0%
! ATGAATTATCACATCCAAAT+TGG + tig0010472:17843-17862 Msa1348730:intron 25.0%
!! AAGAGACATTTTATGTGTTA+GGG - tig0010472:18197-18216 None:intergenic 25.0%
!! AAAGAGACATTTTATGTGTT+AGG - tig0010472:18198-18217 None:intergenic 25.0%
! TGTACTTAAAAGATACAAGA+TGG + tig0010472:18233-18252 Msa1348730:intron 25.0%
! TGGTTAATAGACACAAAATA+AGG - tig0010472:18502-18521 None:intergenic 25.0%
! TATTAATATATGCAGAGGTA+TGG + tig0010472:18936-18955 Msa1348730:intron 25.0%
!! ATTAATATATGCAGAGGTAT+GGG + tig0010472:18937-18956 Msa1348730:intron 25.0%
! GACATATTTAGTCCAAAATT+TGG - tig0010472:19332-19351 None:intergenic 25.0%
! AATGAGTAATCTCGAAAATT+TGG - tig0010472:19663-19682 None:intergenic 25.0%
! ATAAATAACTCTCATTCTCA+AGG - tig0010472:19692-19711 None:intergenic 25.0%
! ACATAGAATGAAAGAGTTAT+TGG + tig0010472:19840-19859 Msa1348730:intron 25.0%
! AGTAAAAATATTTCGTTGAG+TGG - tig0010472:19894-19913 None:intergenic 25.0%
! GTTAAACTTATTGTAGATGA+AGG - tig0010472:20264-20283 None:intergenic 25.0%
! GCATATAATTGCACTAATTA+CGG - tig0010472:20531-20550 None:intergenic 25.0%
!!! AGTCTTGTTCATTTTTCTTG+TGG + tig0010472:14031-14050 Msa1348730:CDS 30.0%
AATTGCTAAAATCAACGAAG+AGG + tig0010472:14121-14140 Msa1348730:intron 30.0%
ATTGCTAAAATCAACGAAGA+GGG + tig0010472:14122-14141 Msa1348730:intron 30.0%
! TCAATTTGATGTTGTTGACT+TGG + tig0010472:14186-14205 Msa1348730:intron 30.0%
!! ATTTTAGTGTGTTCCTTTCA+AGG + tig0010472:14212-14231 Msa1348730:intron 30.0%
! CTTTTCTGTGTCAATTTTGA+TGG + tig0010472:14249-14268 Msa1348730:intron 30.0%
ATCTATCAAATTCATGTGCA+TGG + tig0010472:14298-14317 Msa1348730:intron 30.0%
TCTATCAAATTCATGTGCAT+GGG + tig0010472:14299-14318 Msa1348730:intron 30.0%
!!! TCTCAGACTTTGTTTTTTGA+AGG + tig0010472:14378-14397 Msa1348730:intron 30.0%
!!! CTCAGACTTTGTTTTTTGAA+GGG + tig0010472:14379-14398 Msa1348730:intron 30.0%
AAGAAAAACAAAAGTCTGAG+AGG - tig0010472:14409-14428 None:intergenic 30.0%
TAAAATTAACCTCAACTGAG+TGG + tig0010472:14582-14601 Msa1348730:intron 30.0%
CTAATTAATATGATTAGGGC+TGG + tig0010472:14675-14694 Msa1348730:intron 30.0%
CGAAGTTTGTAATAATCTGA+TGG + tig0010472:14869-14888 Msa1348730:intron 30.0%
! GTAATCTCCATTGTTTTCTA+AGG - tig0010472:14950-14969 None:intergenic 30.0%
AAAACAATGGAGATTACACA+AGG + tig0010472:14953-14972 Msa1348730:CDS 30.0%
AAACAATGGAGATTACACAA+GGG + tig0010472:14954-14973 Msa1348730:CDS 30.0%
TTTACATCAAACTTAAGTGC+TGG + tig0010472:15003-15022 Msa1348730:CDS 30.0%
! GCTTTTAAATCAAAGAACGT+AGG - tig0010472:15340-15359 None:intergenic 30.0%
TTTCTTTAAATTGCAAGGTG+GGG - tig0010472:15626-15645 None:intergenic 30.0%
CTTTCTTTAAATTGCAAGGT+GGG - tig0010472:15627-15646 None:intergenic 30.0%
TCTTTCTTTAAATTGCAAGG+TGG - tig0010472:15628-15647 None:intergenic 30.0%
TATCAACTGAGTTAAGTTCA+CGG + tig0010472:15767-15786 Msa1348730:intron 30.0%
ACAGAAAATACTAACTCCTA+CGG + tig0010472:15934-15953 Msa1348730:intron 30.0%
TCTATAAAAACCAACCCATT+AGG + tig0010472:15999-16018 Msa1348730:intron 30.0%
TATAGGAAGACAAGAAATGA+AGG - tig0010472:16026-16045 None:intergenic 30.0%
AATTGCTAAAATCAACGAAG+AGG + tig0010472:14121-14140 Msa1348730:intron 30.0%
ATTGCTAAAATCAACGAAGA+GGG + tig0010472:14122-14141 Msa1348730:intron 30.0%
GGTATGATTAAACCCAAATA+AGG - tig0010472:16213-16232 None:intergenic 30.0%
GTGAAGATTTGTAAATTAGG+TGG - tig0010472:16418-16437 None:intergenic 30.0%
! ATGTTGCTATTCCACATTAT+TGG + tig0010472:16843-16862 Msa1348730:CDS 30.0%
! TGTTGCTATTCCACATTATT+GGG + tig0010472:16844-16863 Msa1348730:CDS 30.0%
AGTAGAAAATACTGTATCCT+GGG - tig0010472:16917-16936 None:intergenic 30.0%
ACCTTGCATATATTATGCAT+TGG + tig0010472:15741-15760 Msa1348730:intron 30.0%
ACCAATGCATAATATATGCA+AGG - tig0010472:17350-17369 None:intergenic 30.0%
! GTTAAACCTTTATTTGTTGC+TGG - tig0010472:17554-17573 None:intergenic 30.0%
GTTTCCTTTAAACACACATT+TGG - tig0010472:17607-17626 None:intergenic 30.0%
GGTTTATTGTGGAAAAATAG+TGG - tig0010472:17631-17650 None:intergenic 30.0%
ACGTAATCAAACATTGAGAT+TGG - tig0010472:17790-17809 None:intergenic 30.0%
TTATCACATCCAAATTGGTA+AGG + tig0010472:17848-17867 Msa1348730:intron 30.0%
TATCACATCCAAATTGGTAA+GGG + tig0010472:17849-17868 Msa1348730:intron 30.0%
!! TTTACATATATGGTACTGGT+TGG - tig0010472:19227-19246 None:intergenic 30.0%
AATCTCGAAAATTTGGTTGA+CGG - tig0010472:19656-19675 None:intergenic 30.0%
! ACATTTTAAATGTGGAGAAG+TGG + tig0010472:19751-19770 Msa1348730:intron 30.0%
! CATTTTAAATGTGGAGAAGT+GGG + tig0010472:19752-19771 Msa1348730:intron 30.0%
! ATTTTAAATGTGGAGAAGTG+GGG + tig0010472:19753-19772 Msa1348730:intron 30.0%
!!! AGATTGTGTTTTGACGTTTT+TGG + tig0010472:19967-19986 Msa1348730:intron 30.0%
AATGTTGGATTGTCTATTTG+TGG - tig0010472:20054-20073 None:intergenic 30.0%
AACTAAGCACATCATACAAT+AGG + tig0010472:20665-20684 Msa1348730:three_prime_UTR 30.0%
! TTTTTCTTGTGGCGTTTATG+TGG + tig0010472:14042-14061 Msa1348730:CDS 35.0%
! ACAACTCACGAATGCATTTT+GGG - tig0010472:14075-14094 None:intergenic 35.0%
TCTCAGTTGCTAACTTTGTT+GGG - tig0010472:14333-14352 None:intergenic 35.0%
TTCTCAGTTGCTAACTTTGT+TGG - tig0010472:14334-14353 None:intergenic 35.0%
ATGTATCTGCACATGAGAAT+GGG + tig0010472:14523-14542 Msa1348730:intron 35.0%
! TACTCACGTCTCATTTGTTA+AGG + tig0010472:14611-14630 Msa1348730:intron 35.0%
! ACTCACGTCTCATTTGTTAA+GGG + tig0010472:14612-14631 Msa1348730:intron 35.0%
TATCAAGTCGAGTGTATGTT+AGG - tig0010472:14827-14846 None:intergenic 35.0%
TAACGATTGTATATGTGCAG+AGG + tig0010472:14896-14915 Msa1348730:intron 35.0%
ATTGTATATGTGCAGAGGTA+TGG + tig0010472:14901-14920 Msa1348730:intron 35.0%
! TTGTATATGTGCAGAGGTAT+GGG + tig0010472:14902-14921 Msa1348730:intron 35.0%
ACGTTACCCTTAGAAAACAA+TGG + tig0010472:14940-14959 Msa1348730:CDS 35.0%
ACAACCAACTCAACAATCTA+TGG + tig0010472:15037-15056 Msa1348730:CDS 35.0%
AAGGTAGTACTTGGAATCAA+CGG - tig0010472:15130-15149 None:intergenic 35.0%
TTTGGCAATAAGGTAGTACT+TGG - tig0010472:15139-15158 None:intergenic 35.0%
!!! CCTCTAGTTTTTTGGCAATA+AGG - tig0010472:15149-15168 None:intergenic 35.0%
CCTTATTGCCAAAAAACTAG+AGG + tig0010472:15146-15165 Msa1348730:CDS 35.0%
GGTATGTAATTAATTAGGCC+TGG + tig0010472:15167-15186 Msa1348730:intron 35.0%
TGGTATAGTAGTTTGAATCC+AGG - tig0010472:15188-15207 None:intergenic 35.0%
GTTGAGTGATGAATGAATGT+TGG - tig0010472:15476-15495 None:intergenic 35.0%
TAACTAGAACAACGTTTACG+TGG + tig0010472:15793-15812 Msa1348730:intron 35.0%
CAAGAAATGAAGGACCTAAT+GGG - tig0010472:16016-16035 None:intergenic 35.0%
ACAAGAAATGAAGGACCTAA+TGG - tig0010472:16017-16036 None:intergenic 35.0%
TGTCTGGGTGTAGATAATAA+TGG + tig0010472:16053-16072 Msa1348730:intron 35.0%
ATAATAATGGCAGCTACTCA+TGG + tig0010472:16066-16085 Msa1348730:CDS 35.0%
TAATAATGGCAGCTACTCAT+GGG + tig0010472:16067-16086 Msa1348730:CDS 35.0%
! ACAACTCACGAATGCATTTT+GGG - tig0010472:14075-14094 None:intergenic 35.0%
GGGTCAAGTTCAAAAGAATT+TGG - tig0010472:16234-16253 None:intergenic 35.0%
! GACAACATCATAGATTTTGC+AGG + tig0010472:16285-16304 Msa1348730:CDS 35.0%
TTATGGCTAATAACGAAGGA+AGG + tig0010472:16548-16567 Msa1348730:intron 35.0%
!! AGATTTCGTTTTGGATCCAT+TGG + tig0010472:16571-16590 Msa1348730:CDS 35.0%
ACCAGTTATACTAGTCATGA+CGG + tig0010472:16600-16619 Msa1348730:CDS 35.0%
GTAGATGGAGTTGTTCATTA+CGG + tig0010472:16782-16801 Msa1348730:CDS 35.0%
TAGATGGAGTTGTTCATTAC+GGG + tig0010472:16783-16802 Msa1348730:CDS 35.0%
CAGTAGAAAATACTGTATCC+TGG - tig0010472:16918-16937 None:intergenic 35.0%
!!! CTATATCTCAAGCTAGCTTT+TGG + tig0010472:17076-17095 Msa1348730:intron 35.0%
TGCATAATATATGCAAGGTC+CGG - tig0010472:17345-17364 None:intergenic 35.0%
TAGACACCAGCAACAAATAA+AGG + tig0010472:17545-17564 Msa1348730:intron 35.0%
ATTGAGAGAAACACACTTCA+CGG + tig0010472:17890-17909 Msa1348730:intron 35.0%
AGAAAAATGACGTTAGTGCT+AGG + tig0010472:18663-18682 Msa1348730:intron 35.0%
AGCGAATTGTATATTAACGG+TGG + tig0010472:18885-18904 Msa1348730:intron 35.0%
GCGAATTGTATATTAACGGT+GGG + tig0010472:18886-18905 Msa1348730:intron 35.0%
ACGTTACCACTAGAAAACAA+TGG + tig0010472:18975-18994 Msa1348730:CDS 35.0%
! TAGTCACCATTGTTTTCTAG+TGG - tig0010472:18984-19003 None:intergenic 35.0%
AAAACAATGGTGACTACACA+AGG + tig0010472:18988-19007 Msa1348730:CDS 35.0%
AAACAATGGTGACTACACAA+GGG + tig0010472:18989-19008 Msa1348730:CDS 35.0%
ACAATCATCTCAACAACCTT+TGG + tig0010472:19078-19097 Msa1348730:CDS 35.0%
TTGTTCAGGAATACCATCAA+CGG - tig0010472:19126-19145 None:intergenic 35.0%
! TTGATGGTATTCCTGAACAA+AGG + tig0010472:19126-19145 Msa1348730:CDS 35.0%
ATCTCGAAAATTTGGTTGAC+GGG - tig0010472:19655-19674 None:intergenic 35.0%
! GACCTCACACATTTTAAATG+TGG + tig0010472:19743-19762 Msa1348730:intron 35.0%
! CTCCACATTTAAAATGTGTG+AGG - tig0010472:19748-19767 None:intergenic 35.0%
! GCATTTTATATGTAGGGGTT+GGG - tig0010472:19793-19812 None:intergenic 35.0%
! TGCATTTTATATGTAGGGGT+TGG - tig0010472:19794-19813 None:intergenic 35.0%
TTGGATTGTCTATTTGTGGT+CGG - tig0010472:20050-20069 None:intergenic 35.0%
CTCTTATATGCTTGCAACAA+AGG + tig0010472:20318-20337 Msa1348730:CDS 35.0%
TCATAACATAGTTCACCACT+TGG - tig0010472:20492-20511 None:intergenic 35.0%
CATAGACAACAACTTTGTTC+TGG + tig0010472:20552-20571 Msa1348730:three_prime_UTR 35.0%
CAAGACTATTCTAACGTCAG+TGG - tig0010472:14018-14037 None:intergenic 40.0%
! CACAACTCACGAATGCATTT+TGG - tig0010472:14076-14095 None:intergenic 40.0%
ATCGAACATGAGACCTTGAA+AGG - tig0010472:14228-14247 None:intergenic 40.0%
CATTCTCATGTGCAGATACA+TGG - tig0010472:14524-14543 None:intergenic 40.0%
CATGTATCTGCACATGAGAA+TGG + tig0010472:14522-14541 Msa1348730:intron 40.0%
GAGATTACACAAGGGAAGTA+GGG + tig0010472:14962-14981 Msa1348730:CDS 40.0%
GGTACCATAGATTGTTGAGT+TGG - tig0010472:15044-15063 None:intergenic 40.0%
AACAAAGGCAACATGCTCTT+TGG + tig0010472:15100-15119 Msa1348730:CDS 40.0%
ACAAAGGCAACATGCTCTTT+GGG + tig0010472:15101-15120 Msa1348730:CDS 40.0%
AGGTAGTACTTGGAATCAAC+GGG - tig0010472:15129-15148 None:intergenic 40.0%
! AAATGAAGGACCTAATGGGT+TGG - tig0010472:16012-16031 None:intergenic 40.0%
TTCCTATATTGCGTGTGTCT+GGG + tig0010472:16038-16057 Msa1348730:intron 40.0%
! CACAACTCACGAATGCATTT+TGG - tig0010472:14076-14095 None:intergenic 40.0%
! AACGAAGAGGGTCCTTATTT+GGG + tig0010472:14134-14153 Msa1348730:intron 40.0%
!! AGCCTGGATTTTGAAGAAGA+GGG - tig0010472:16254-16273 None:intergenic 40.0%
!! TAGCCTGGATTTTGAAGAAG+AGG - tig0010472:16255-16274 None:intergenic 40.0%
TCTATTCCGGCCCATTTAAA+AGG + tig0010472:16320-16339 Msa1348730:intron 40.0%
! GAAGGAAGGAGATTTCGTTT+TGG + tig0010472:16562-16581 Msa1348730:intron 40.0%
!! TATAACTGGTTTGTCGCCAA+TGG - tig0010472:16590-16609 None:intergenic 40.0%
CCAGTTATACTAGTCATGAC+GGG + tig0010472:16601-16620 Msa1348730:CDS 40.0%
TCCACATTATTGGGCTCATT+TGG + tig0010472:16853-16872 Msa1348730:CDS 40.0%
TACAGTCCACAATAATTCCC+AGG + tig0010472:16897-16916 Msa1348730:intron 40.0%
CTGTATCCTGGGAATTATTG+TGG - tig0010472:16906-16925 None:intergenic 40.0%
!!! CATTTTGGTGGTGTGAATTC+CGG + tig0010472:17323-17342 Msa1348730:intron 40.0%
GCTGGTGTCTATAATGACTA+GGG - tig0010472:17536-17555 None:intergenic 40.0%
TGCTGGTGTCTATAATGACT+AGG - tig0010472:17537-17556 None:intergenic 40.0%
GATTGGACTCTCGAATTGAT+CGG - tig0010472:17773-17792 None:intergenic 40.0%
CGATTTCTCCCTTACCAATT+TGG - tig0010472:17860-17879 None:intergenic 40.0%
! ACACACTTCACGGTTCTAAT+TGG + tig0010472:17900-17919 Msa1348730:intron 40.0%
! CACACTTCACGGTTCTAATT+GGG + tig0010472:17901-17920 Msa1348730:intron 40.0%
TTAGTGCTAGGACAAATGTC+TGG + tig0010472:18675-18694 Msa1348730:intron 40.0%
TCAACGGGAAAAATCTCTTC+TGG - tig0010472:19110-19129 None:intergenic 40.0%
! GAAGAGATTTTTCCCGTTGA+TGG + tig0010472:19110-19129 Msa1348730:CDS 40.0%
TGTTCAGGAATACCATCAAC+GGG - tig0010472:19125-19144 None:intergenic 40.0%
AACAAAGGCAACATGCTCTT+TGG + tig0010472:15100-15119 Msa1348730:CDS 40.0%
ACAAAGGCAACATGCTCTTT+GGG + tig0010472:15101-15120 Msa1348730:CDS 40.0%
ACGGTAGTACTTGGAATCAA+CGG - tig0010472:19171-19190 None:intergenic 40.0%
TTTGGCAATACGGTAGTACT+TGG - tig0010472:19180-19199 None:intergenic 40.0%
!!! CCTCGAGTTTTTTGGCAATA+CGG - tig0010472:19190-19209 None:intergenic 40.0%
TTGCCAAAAAACTCGAGGTA+TGG + tig0010472:19192-19211 Msa1348730:intron 40.0%
!!! AGACCATACCTCGAGTTTTT+TGG - tig0010472:19198-19217 None:intergenic 40.0%
AAAAACTCGAGGTATGGTCT+AGG + tig0010472:19198-19217 Msa1348730:intron 40.0%
TAAGTTTAACGTGAGTCCAG+TGG + tig0010472:20274-20293 Msa1348730:CDS 40.0%
GATTCCCTTCATTGCTATCA+GGG + tig0010472:20340-20359 Msa1348730:CDS 40.0%
TATCAGGGCTCTTTCTGATT+TGG + tig0010472:20355-20374 Msa1348730:CDS 40.0%
GACAACAACTTTGTTCTGGT+TGG + tig0010472:20556-20575 Msa1348730:three_prime_UTR 40.0%
AGCAACTGAGAAGTCACTCA+TGG + tig0010472:14342-14361 Msa1348730:intron 45.0%
GTAAAACGACCACTCAGTTG+AGG - tig0010472:14594-14613 None:intergenic 45.0%
TCTAAGGGTAACGTGTCATC+AGG - tig0010472:14934-14953 None:intergenic 45.0%
GGAGATTACACAAGGGAAGT+AGG + tig0010472:14961-14980 Msa1348730:CDS 45.0%
TTGTTCAGGAATGCCACCAA+CGG - tig0010472:15085-15104 None:intergenic 45.0%
! TTGGTGGCATTCCTGAACAA+AGG + tig0010472:15085-15104 Msa1348730:CDS 45.0%
AGAGCATGTTGCCTTTGTTC+AGG - tig0010472:15099-15118 None:intergenic 45.0%
GGTAGTACTTGGAATCAACG+GGG - tig0010472:15128-15147 None:intergenic 45.0%
CTTCCTATATTGCGTGTGTC+TGG + tig0010472:16037-16056 Msa1348730:intron 45.0%
CAACGAAGAGGGTCCTTATT+TGG + tig0010472:14133-14152 Msa1348730:intron 45.0%
GACCCTCTTCTTCAAAATCC+AGG + tig0010472:16249-16268 Msa1348730:CDS 45.0%
TTGTCACTAGCAGTATAGCC+TGG - tig0010472:16270-16289 None:intergenic 45.0%
GTAAGTGCATGCGTCTATTC+CGG + tig0010472:16307-16326 Msa1348730:intron 45.0%
! CTTGGTCCTTTTAAATGGGC+CGG - tig0010472:16329-16348 None:intergenic 45.0%
AGAGCTGCACCTAGTAAACA+AGG + tig0010472:16390-16409 Msa1348730:intron 45.0%
GAGCTGCACCTAGTAAACAA+GGG + tig0010472:16391-16410 Msa1348730:intron 45.0%
! TAGGTGGTCCCTTGTTTACT+AGG - tig0010472:16402-16421 None:intergenic 45.0%
CCCGTCATGACTAGTATAAC+TGG - tig0010472:16604-16623 None:intergenic 45.0%
GTTGTTCATTACGGGATTGC+TGG + tig0010472:16791-16810 Msa1348730:CDS 45.0%
GCAAACCCTTCCTTGCATAT+CGG + tig0010472:16818-16837 Msa1348730:CDS 45.0%
CATCTCCGATATGCAAGGAA+GGG - tig0010472:16826-16845 None:intergenic 45.0%
ACATCTCCGATATGCAAGGA+AGG - tig0010472:16827-16846 None:intergenic 45.0%
AGCAACATCTCCGATATGCA+AGG - tig0010472:16831-16850 None:intergenic 45.0%
GCCAAATGAGCCCAATAATG+TGG - tig0010472:16857-16876 None:intergenic 45.0%
ATTGGGCTCATTTGGCACTT+TGG + tig0010472:16861-16880 Msa1348730:CDS 45.0%
CGTCTCATAACTTACCTCTC+AGG + tig0010472:18704-18723 Msa1348730:intron 45.0%
! TATATGCAGAGGTATGGGCA+AGG + tig0010472:18942-18961 Msa1348730:intron 45.0%
GTCAGCAGCACTTATGTTTG+AGG - tig0010472:19045-19064 None:intergenic 45.0%
! TCTCTTCTGGTTGGTACCAA+AGG - tig0010472:19097-19116 None:intergenic 45.0%
CGGGAAAAATCTCTTCTGGT+TGG - tig0010472:19106-19125 None:intergenic 45.0%
AGAGCATGTTGCCTTTGTTC+AGG - tig0010472:15099-15118 None:intergenic 45.0%
GGTAGTACTTGGAATCAACG+GGG - tig0010472:15128-15147 None:intergenic 45.0%
CGGTAGTACTTGGAATCAAC+GGG - tig0010472:19170-19189 None:intergenic 45.0%
CCGTATTGCCAAAAAACTCG+AGG + tig0010472:19187-19206 Msa1348730:CDS 45.0%
GTCTGTGAGCTTAGCTCATT+TGG - tig0010472:19822-19841 None:intergenic 45.0%
ATGCTTGACAACGACACCAA+AGG + tig0010472:20178-20197 Msa1348730:CDS 45.0%
CTGTCTACAAGCACAACCTT+TGG - tig0010472:20197-20216 None:intergenic 45.0%
AAGGTTGTGCTTGTAGACAG+AGG + tig0010472:20197-20216 Msa1348730:CDS 45.0%
TAGACAGAGGAACAAGTGCA+GGG + tig0010472:20210-20229 Msa1348730:CDS 45.0%
GGATTCCCTTCATTGCTATC+AGG + tig0010472:20339-20358 Msa1348730:CDS 45.0%
AGAGCCCTGATAGCAATGAA+GGG - tig0010472:20347-20366 None:intergenic 45.0%
AAGAGCCCTGATAGCAATGA+AGG - tig0010472:20348-20367 None:intergenic 45.0%
AATGACCACAGCAACAGAGT+TGG - tig0010472:20438-20457 None:intergenic 45.0%
ACATAGTTCACCACTTGGAG+TGG - tig0010472:20487-20506 None:intergenic 45.0%
! CTTTGTTCTGGTTGGTTGTC+CGG + tig0010472:20564-20583 Msa1348730:three_prime_UTR 45.0%
!! GATTATTTAATATTAATTAT+TGG + tig0010472:16659-16678 Msa1348730:intron 5.0%
!!! ATCTTTAAAATTATAAATTT+AGG + tig0010472:18070-18089 Msa1348730:intron 5.0%
!! TAAAAAAAAAAAATATTTAC+AGG - tig0010472:18303-18322 None:intergenic 5.0%
!!! AATAAAAAAAATCATATTTT+TGG - tig0010472:19475-19494 None:intergenic 5.0%
! TATGTGCAGAGGTATGGGCA+AGG + tig0010472:14907-14926 Msa1348730:intron 50.0%
! ATGTGCAGAGGTATGGGCAA+GGG + tig0010472:14908-14927 Msa1348730:intron 50.0%
CGGGGAAAATCTCTTCTGGT+TGG - tig0010472:15065-15084 None:intergenic 50.0%
CCAACGGGGAAAATCTCTTC+TGG - tig0010472:15069-15088 None:intergenic 50.0%
! CCAGAAGAGATTTTCCCCGT+TGG + tig0010472:15066-15085 Msa1348730:CDS 50.0%
! GAAGAGATTTTCCCCGTTGG+TGG + tig0010472:15069-15088 Msa1348730:CDS 50.0%
TGTTCAGGAATGCCACCAAC+GGG - tig0010472:15084-15103 None:intergenic 50.0%
AGAATGAAGGGTAACCCCCT+TGG - tig0010472:15975-15994 None:intergenic 50.0%
CACCCAGACACACGCAATAT+AGG - tig0010472:16043-16062 None:intergenic 50.0%
! AGTCATGACGGGATTGAGTG+TGG + tig0010472:16612-16631 Msa1348730:CDS 50.0%
GGGATTGAGTGTGGTACGTA+TGG + tig0010472:16621-16640 Msa1348730:intron 50.0%
!! CTCATTTGGCACTTTGGAGC+TGG + tig0010472:16867-16886 Msa1348730:CDS 50.0%
CTGCGTGAGCTTAACTCAGT+TGG - tig0010472:17377-17396 None:intergenic 50.0%
GAGTTAAGCTCACGCAGACT+TGG + tig0010472:17380-17399 Msa1348730:intron 50.0%
GTGACTACACAAGGGACGTA+GGG + tig0010472:18997-19016 Msa1348730:CDS 50.0%
GTAGACAGAGGAACAAGTGC+AGG + tig0010472:20209-20228 Msa1348730:CDS 50.0%
TAACGTGAGTCCAGTGGACA+TGG + tig0010472:20280-20299 Msa1348730:CDS 50.0%
GATGCACTTTCCATGTCCAC+TGG - tig0010472:20293-20312 None:intergenic 50.0%
! GGACATGGAAAGTGCATCAG+TGG + tig0010472:20295-20314 Msa1348730:CDS 50.0%
!! AGGGCTCTTTCTGATTTGGC+TGG + tig0010472:20359-20378 Msa1348730:CDS 50.0%
!! GCTCTTTCTGATTTGGCTGG+CGG + tig0010472:20362-20381 Msa1348730:CDS 50.0%
!! TGAGAAGGTATCAGCCTCGT+TGG - tig0010472:20402-20421 None:intergenic 50.0%
! CACAGCAACAGAGTTGGTTG+CGG - tig0010472:20432-20451 None:intergenic 50.0%
TGTCATCACACCACTCCAAG+TGG + tig0010472:20474-20493 Msa1348730:CDS 50.0%
GTTCAGGAATGCCACCAACG+GGG - tig0010472:15083-15102 None:intergenic 55.0%
!! TTTGGCACTTTGGAGCTGGC+AGG + tig0010472:16871-16890 Msa1348730:CDS 55.0%
GCTCTCACGTCGTCATTGCT+AGG + tig0010472:18726-18745 Msa1348730:intron 55.0%
GGTGACTACACAAGGGACGT+AGG + tig0010472:18996-19015 Msa1348730:CDS 55.0%
! ATGTGGAGAAGTGGGGTGTC+AGG + tig0010472:19760-19779 Msa1348730:intron 55.0%
! TGTGGAGAAGTGGGGTGTCA+GGG + tig0010472:19761-19780 Msa1348730:intron 55.0%
!! CTTTCTGATTTGGCTGGCGG+CGG + tig0010472:20365-20384 Msa1348730:CDS 55.0%
ATCAGCCTCGTTGGACTCTG+CGG - tig0010472:20393-20412 None:intergenic 55.0%
GGCTGATACCTTCTCACCAC+TGG + tig0010472:20406-20425 Msa1348730:CDS 55.0%
CGCAACCAACTCTGTTGCTG+TGG + tig0010472:20430-20449 Msa1348730:CDS 55.0%
GCCTAGCCAGACCAAGCCAA+GGG + tig0010472:15956-15975 Msa1348730:intron 60.0%
CCTAGCCAGACCAAGCCAAG+GGG + tig0010472:15957-15976 Msa1348730:intron 60.0%
CTAGCCAGACCAAGCCAAGG+GGG + tig0010472:15958-15977 Msa1348730:intron 60.0%
!! GTAACCCCCTTGGCTTGGTC+TGG - tig0010472:15965-15984 None:intergenic 60.0%
GAAGGGTAACCCCCTTGGCT+TGG - tig0010472:15970-15989 None:intergenic 60.0%
TGACGACGTGAGAGCCTGAG+AGG - tig0010472:18721-18740 None:intergenic 60.0%
! ACAGAGTTGGTTGCGGCCAG+TGG - tig0010472:20425-20444 None:intergenic 60.0%
GCTTGGTCTGGCTAGGCCGT+AGG - tig0010472:15953-15972 None:intergenic 65.0%
GGCCTAGCCAGACCAAGCCA+AGG + tig0010472:15955-15974 Msa1348730:intron 65.0%
!! CCCCTTGGCTTGGTCTGGCT+AGG - tig0010472:15960-15979 None:intergenic 65.0%
GGTTGCGGCCAGTGGTGAGA+AGG - tig0010472:20417-20436 None:intergenic 65.0%
CGGCACCGCAGAGTCCAACG+AGG + tig0010472:20385-20404 Msa1348730:CDS 70.0%
Chromosome Type Strat End Strand Name
tig0010472 gene 14008 20713 14008 ID=Msa1348730;Name=Msa1348730
tig0010472 mRNA 14008 20713 14008 ID=Msa1348730-mRNA-1;Parent=Msa1348730;Name=Msa1348730-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0.66|0.57|1|1|1|7|214|469
tig0010472 exon 14008 14085 14008 ID=Msa1348730-mRNA-1:exon:6553;Parent=Msa1348730-mRNA-1
tig0010472 exon 14916 15167 14916 ID=Msa1348730-mRNA-1:exon:6554;Parent=Msa1348730-mRNA-1
tig0010472 exon 16066 16306 16066 ID=Msa1348730-mRNA-1:exon:6555;Parent=Msa1348730-mRNA-1
tig0010472 exon 16566 16633 16566 ID=Msa1348730-mRNA-1:exon:6556;Parent=Msa1348730-mRNA-1
tig0010472 exon 16737 16892 16737 ID=Msa1348730-mRNA-1:exon:6557;Parent=Msa1348730-mRNA-1
tig0010472 exon 18951 19208 18951 ID=Msa1348730-mRNA-1:exon:6558;Parent=Msa1348730-mRNA-1
tig0010472 exon 20143 20713 20143 ID=Msa1348730-mRNA-1:exon:6559;Parent=Msa1348730-mRNA-1
tig0010472 CDS 14008 14085 14008 ID=Msa1348730-mRNA-1:cds;Parent=Msa1348730-mRNA-1
tig0010472 CDS 14916 15167 14916 ID=Msa1348730-mRNA-1:cds;Parent=Msa1348730-mRNA-1
tig0010472 CDS 16066 16306 16066 ID=Msa1348730-mRNA-1:cds;Parent=Msa1348730-mRNA-1
tig0010472 CDS 16566 16633 16566 ID=Msa1348730-mRNA-1:cds;Parent=Msa1348730-mRNA-1
tig0010472 CDS 16737 16892 16737 ID=Msa1348730-mRNA-1:cds;Parent=Msa1348730-mRNA-1
tig0010472 CDS 18951 19208 18951 ID=Msa1348730-mRNA-1:cds;Parent=Msa1348730-mRNA-1
tig0010472 CDS 20143 20499 20143 ID=Msa1348730-mRNA-1:cds;Parent=Msa1348730-mRNA-1
tig0010472 three_prime_UTR 20500 20713 20500 ID=Msa1348730-mRNA-1:three_prime_utr;Parent=Msa1348730-mRNA-1
Gene Sequence

>Msa1348730

ATGGCAGCCACTGACGTTAGAATAGTCTTGTTCATTTTTCTTGTGGCGTTTATGTGGTTTAATACCCAAAATGCATTCAGGTATGGGCAAGGGCCTGATGACACGTTACCCTTAGAAAACAATGGAGATTACACAAGGGAAGTAGGGTATTTAAAATTTGCAGATTTTACATCAAACTTAAGTGCTGGCAGTACATTTGACAACCAACTCAACAATCTATGGTACCAACCAGAAGAGATTTTCCCCGTTGGTGGCATTCCTGAACAAAGGCAACATGCTCTTTGGGTCCCCGTTGATTCCAAGTACTACCTTATTGCCAAAAAACTAGAGATAATAATGGCAGCTACTCATGGGAGAATAGTCTTGTTCATGTTTCTTGCAGCCTTTATGTTGTTTAATACCCAAAATGCATTCGTGAGTTGTGCTTTAACATCAGAGTTACAAAACAAAATTGCTAAAATCAACGAAGAGGGTCCTTATTTGGGTTTAATCATACCAAATTCTTTTGAACTTGACCCTCTTCTTCAAAATCCAGGCTATACTGCTAGTGACAACATCATAGATTTTGCAGGAAGGAGATTTCGTTTTGGATCCATTGGCGACAAACCAGTTATACTAGTCATGACGGGATTGAGTGTGATAAACGCAGCTATAACAACACAGCTTCTGTTAAGCTTTTTCAAAGTAGATGGAGTTGTTCATTACGGGATTGCTGGAAATGCAAACCCTTCCTTGCATATCGGAGATGTTGCTATTCCACATTATTGGGCTCATTTGGCACTTTGGAGCTGGCAGAGGTATGGGCAAGGTGCTGATGATACGTTACCACTAGAAAACAATGGTGACTACACAAGGGACGTAGGGTTCTTGAAATTTTCAGATTTTACCTCAAACATAAGTGCTGCTGACAGTGTTACAGTTGACAATCATCTCAACAACCTTTGGTACCAACCAGAAGAGATTTTTCCCGTTGATGGTATTCCTGAACAAAGGCAACATGCTCTTTGGGTCCCCGTTGATTCCAAGTACTACCGTATTGCCAAAAAACTCGAGGAAATGAAGCTAGATGCGTGCATAGACTCAGACACATGCTTGACAACGACACCAAAGGTTGTGCTTGTAGACAGAGGAACAAGTGCAGGGTTCTATCTAGACAATGCAGCATACAGAACCTTCATCTACAATAAGTTTAACGTGAGTCCAGTGGACATGGAAAGTGCATCAGTGGCTCTTATATGCTTGCAACAAAGGATTCCCTTCATTGCTATCAGGGCTCTTTCTGATTTGGCTGGCGGCGGCACCGCAGAGTCCAACGAGGCTGATACCTTCTCACCACTGGCCGCAACCAACTCTGTTGCTGTGGTCATTGAGTTTGTGAAGCTATTGTCATCACACCACTCCAAGTGGTGA

Protein sequence

>Msa1348730

MAATDVRIVLFIFLVAFMWFNTQNAFRYGQGPDDTLPLENNGDYTREVGYLKFADFTSNLSAGSTFDNQLNNLWYQPEEIFPVGGIPEQRQHALWVPVDSKYYLIAKKLEIIMAATHGRIVLFMFLAAFMLFNTQNAFVSCALTSELQNKIAKINEEGPYLGLIIPNSFELDPLLQNPGYTASDNIIDFAGRRFRFGSIGDKPVILVMTGLSVINAAITTQLLLSFFKVDGVVHYGIAGNANPSLHIGDVAIPHYWAHLALWSWQRYGQGADDTLPLENNGDYTRDVGFLKFSDFTSNISAADSVTVDNHLNNLWYQPEEIFPVDGIPEQRQHALWVPVDSKYYRIAKKLEEMKLDACIDSDTCLTTTPKVVLVDRGTSAGFYLDNAAYRTFIYNKFNVSPVDMESASVALICLQQRIPFIAIRALSDLAGGGTAESNEADTFSPLAATNSVAVVIEFVKLLSSHHSKW*