Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1348730 | XP_013462014.1 | 81.395 | 86 | 14 | 1 | 27 | 110 | 154 | 239 | 4.68e-37 | 150 |
Msa1348730 | XP_013462014.1 | 96.639 | 357 | 12 | 0 | 113 | 469 | 1 | 357 | 0.0 | 716 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1348730 | sp|Q07469|BSPA_POPDE | 29.643 | 280 | 165 | 7 | 182 | 459 | 52 | 301 | 1.03e-33 | 132 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1348730 | A0A072V1Y8 | 81.395 | 86 | 14 | 1 | 27 | 110 | 154 | 239 | 2.24e-37 | 150 |
Msa1348730 | A0A072V1Y8 | 96.639 | 357 | 12 | 0 | 113 | 469 | 1 | 357 | 0.0 | 716 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa1348730 | Msa1348780 | 0.977874 | 1.163810e-144 | -8.615850e-47 |
Msa0387090 | Msa1348730 | 0.903531 | 3.150587e-79 | -8.615850e-47 |
Msa0387110 | Msa1348730 | 0.996336 | 3.011410e-226 | -8.615850e-47 |
Msa0433880 | Msa1348730 | 0.879462 | 1.222164e-69 | -8.615850e-47 |
Msa0477790 | Msa1348730 | 0.879802 | 9.251007e-70 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1348730 | MtrunA17_Chr3g0140051 | 96.639 | 357 | 12 | 0 | 113 | 469 | 1 | 357 | 0.0 | 716 |
Msa1348730 | MtrunA17_Chr3g0140051 | 81.395 | 86 | 14 | 1 | 27 | 110 | 154 | 239 | 4.31e-41 | 150 |
Msa1348730 | MtrunA17_Chr3g0140061 | 96.317 | 353 | 13 | 0 | 113 | 465 | 1 | 353 | 0.0 | 706 |
Msa1348730 | MtrunA17_Chr3g0140061 | 82.558 | 86 | 13 | 1 | 27 | 110 | 154 | 239 | 8.56e-42 | 152 |
Msa1348730 | MtrunA17_Chr6g0486081 | 52.698 | 315 | 140 | 4 | 150 | 462 | 29 | 336 | 7.34e-120 | 353 |
Msa1348730 | MtrunA17_Chr6g0486081 | 48.810 | 84 | 39 | 1 | 27 | 110 | 147 | 226 | 5.71e-21 | 94.0 |
Msa1348730 | MtrunA17_Chr6g0486101 | 50.794 | 315 | 141 | 4 | 150 | 462 | 30 | 332 | 2.14e-114 | 340 |
Msa1348730 | MtrunA17_Chr6g0486101 | 51.389 | 72 | 35 | 0 | 39 | 110 | 151 | 222 | 1.15e-17 | 84.0 |
Msa1348730 | MtrunA17_Chr6g0486091 | 49.524 | 315 | 145 | 4 | 150 | 462 | 31 | 333 | 1.04e-109 | 328 |
Msa1348730 | MtrunA17_Chr6g0486091 | 48.611 | 72 | 37 | 0 | 39 | 110 | 152 | 223 | 2.89e-16 | 79.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1348730 | AT4G28940.1 | 57.321 | 321 | 126 | 3 | 150 | 468 | 33 | 344 | 1.75e-136 | 397 |
Msa1348730 | AT4G28940.1 | 57.143 | 84 | 30 | 1 | 27 | 110 | 151 | 228 | 6.90e-26 | 108 |
Msa1348730 | AT4G28940.2 | 58.621 | 261 | 99 | 2 | 208 | 468 | 1 | 252 | 6.60e-111 | 328 |
Msa1348730 | AT4G28940.2 | 57.143 | 84 | 30 | 1 | 27 | 110 | 59 | 136 | 9.77e-27 | 108 |
Msa1348730 | AT4G24340.1 | 37.261 | 314 | 174 | 5 | 151 | 462 | 43 | 335 | 1.34e-64 | 212 |
Msa1348730 | AT4G24350.1 | 36.306 | 314 | 180 | 6 | 151 | 462 | 38 | 333 | 3.03e-62 | 206 |
Msa1348730 | AT4G24350.2 | 34.444 | 270 | 159 | 5 | 151 | 418 | 38 | 291 | 3.97e-49 | 170 |
Msa1348730 | AT4G24350.3 | 36.667 | 240 | 134 | 5 | 223 | 462 | 1 | 222 | 4.69e-47 | 162 |
Msa1348730 | AT4G24350.4 | 34.634 | 205 | 118 | 4 | 214 | 418 | 9 | 197 | 1.25e-36 | 134 |
Find 119 sgRNAs with CRISPR-Local
Find 369 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAACGAAGAGGGTCCTTATT+TGG | 0.132523 | tig0010472:+16197 | Msa1348730:CDS |
CACAACTCACGAATGCATTT+TGG | 0.147904 | tig0010472:-14073 | None:intergenic |
CACAACTCACGAATGCATTT+TGG | 0.147904 | tig0010472:-16137 | None:intergenic |
ATGTTGCTATTCCACATTAT+TGG | 0.227186 | tig0010472:+16843 | Msa1348730:CDS |
GGATTCCCTTCATTGCTATC+AGG | 0.272090 | tig0010472:+20339 | Msa1348730:CDS |
AACAAAGGCAACATGCTCTT+TGG | 0.272171 | tig0010472:+15100 | Msa1348730:CDS |
AACAAAGGCAACATGCTCTT+TGG | 0.272171 | tig0010472:+19141 | Msa1348730:CDS |
TGTTGCTATTCCACATTATT+GGG | 0.272480 | tig0010472:+16844 | Msa1348730:CDS |
GGTATGATTAAACCCAAATA+AGG | 0.283272 | tig0010472:-16210 | None:intergenic |
GGGTCAAGTTCAAAAGAATT+TGG | 0.317467 | tig0010472:-16231 | None:intergenic |
CTTTGTTCTGGTTGGTTGTC+CGG | 0.319062 | tig0010472:+20564 | Msa1348730:three_prime_UTR |
TATCAGGGCTCTTTCTGATT+TGG | 0.324485 | tig0010472:+20355 | Msa1348730:CDS |
CTCATTTGGCACTTTGGAGC+TGG | 0.328354 | tig0010472:+16867 | Msa1348730:CDS |
TCCACATTATTGGGCTCATT+TGG | 0.331452 | tig0010472:+16853 | Msa1348730:CDS |
TTGGGTATTAAACAACATAA+AGG | 0.346307 | tig0010472:-16118 | None:intergenic |
AGAGCATGTTGCCTTTGTTC+AGG | 0.348607 | tig0010472:-15096 | None:intergenic |
AGAGCATGTTGCCTTTGTTC+AGG | 0.348607 | tig0010472:-19137 | None:intergenic |
AACGAAGAGGGTCCTTATTT+GGG | 0.350130 | tig0010472:+16198 | Msa1348730:CDS |
GCATATAATTGCACTAATTA+CGG | 0.358763 | tig0010472:-20528 | None:intergenic |
CATAGACAACAACTTTGTTC+TGG | 0.367043 | tig0010472:+20552 | Msa1348730:three_prime_UTR |
ACAACCAACTCAACAATCTA+TGG | 0.372643 | tig0010472:+15037 | Msa1348730:CDS |
GTTGTTCATTACGGGATTGC+TGG | 0.372697 | tig0010472:+16791 | Msa1348730:CDS |
TAGATGGAGTTGTTCATTAC+GGG | 0.375885 | tig0010472:+16783 | Msa1348730:CDS |
CCAACGGGGAAAATCTCTTC+TGG | 0.376793 | tig0010472:-15066 | None:intergenic |
CCCGTCATGACTAGTATAAC+TGG | 0.382128 | tig0010472:-16601 | None:intergenic |
CGGTAGTACTTGGAATCAAC+GGG | 0.404829 | tig0010472:-19167 | None:intergenic |
AGGTAGTACTTGGAATCAAC+GGG | 0.405005 | tig0010472:-15126 | None:intergenic |
ATTGGGCTCATTTGGCACTT+TGG | 0.416383 | tig0010472:+16861 | Msa1348730:CDS |
CTGTCTACAAGCACAACCTT+TGG | 0.418437 | tig0010472:-20194 | None:intergenic |
TGTTCAGGAATGCCACCAAC+GGG | 0.418889 | tig0010472:-15081 | None:intergenic |
GTCAGCAGCACTTATGTTTG+AGG | 0.420611 | tig0010472:-19042 | None:intergenic |
AGGGCTCTTTCTGATTTGGC+TGG | 0.421164 | tig0010472:+20359 | Msa1348730:CDS |
GTAGATGGAGTTGTTCATTA+CGG | 0.424060 | tig0010472:+16782 | Msa1348730:CDS |
ATTTACGCTTTATTATATTC+CGG | 0.425732 | tig0010472:-20583 | None:intergenic |
ACAAAGGCAACATGCTCTTT+GGG | 0.425980 | tig0010472:+15101 | Msa1348730:CDS |
ACAAAGGCAACATGCTCTTT+GGG | 0.425980 | tig0010472:+19142 | Msa1348730:CDS |
ACAATCATCTCAACAACCTT+TGG | 0.430065 | tig0010472:+19078 | Msa1348730:CDS |
TTTGGCAATACGGTAGTACT+TGG | 0.430210 | tig0010472:-19177 | None:intergenic |
ATTGTATATGTGCAGAGGTA+TGG | 0.431241 | tig0010472:+14901 | Msa1348730:intron |
GAAGGAAGGAGATTTCGTTT+TGG | 0.431427 | tig0010472:+16562 | Msa1348730:intron |
CTTTCTGATTTGGCTGGCGG+CGG | 0.432701 | tig0010472:+20365 | Msa1348730:CDS |
CTCTTATATGCTTGCAACAA+AGG | 0.444049 | tig0010472:+20318 | Msa1348730:CDS |
TTTGGCAATAAGGTAGTACT+TGG | 0.451990 | tig0010472:-15136 | None:intergenic |
GCAAACCCTTCCTTGCATAT+CGG | 0.458109 | tig0010472:+16818 | Msa1348730:CDS |
TCTAAGGGTAACGTGTCATC+AGG | 0.462269 | tig0010472:-14931 | None:intergenic |
TATTAATATATGCAGAGGTA+TGG | 0.462558 | tig0010472:+18936 | Msa1348730:intron |
AACTAAGCACATCATACAAT+AGG | 0.463759 | tig0010472:+20665 | Msa1348730:three_prime_UTR |
GTTAAACTTATTGTAGATGA+AGG | 0.469473 | tig0010472:-20261 | None:intergenic |
GACAACAACTTTGTTCTGGT+TGG | 0.479422 | tig0010472:+20556 | Msa1348730:three_prime_UTR |
TGTTCAGGAATACCATCAAC+GGG | 0.480731 | tig0010472:-19122 | None:intergenic |
TTTGGCACTTTGGAGCTGGC+AGG | 0.483139 | tig0010472:+16871 | Msa1348730:CDS |
TCTCTTCTGGTTGGTACCAA+AGG | 0.484946 | tig0010472:-19094 | None:intergenic |
GGTACCATAGATTGTTGAGT+TGG | 0.488750 | tig0010472:-15041 | None:intergenic |
GGAGATTACACAAGGGAAGT+AGG | 0.493178 | tig0010472:+14961 | Msa1348730:CDS |
TTGTATATGTGCAGAGGTAT+GGG | 0.494546 | tig0010472:+14902 | Msa1348730:intron |
AAGAGCCCTGATAGCAATGA+AGG | 0.499791 | tig0010472:-20345 | None:intergenic |
TTTACATCAAACTTAAGTGC+TGG | 0.499968 | tig0010472:+15003 | Msa1348730:CDS |
ATTAATATATGCAGAGGTAT+GGG | 0.510376 | tig0010472:+18937 | Msa1348730:intron |
TATAACTGGTTTGTCGCCAA+TGG | 0.510741 | tig0010472:-16587 | None:intergenic |
GACCCTCTTCTTCAAAATCC+AGG | 0.523176 | tig0010472:+16249 | Msa1348730:CDS |
AAGGTAGTACTTGGAATCAA+CGG | 0.527662 | tig0010472:-15127 | None:intergenic |
GGCTGATACCTTCTCACCAC+TGG | 0.530809 | tig0010472:+20406 | Msa1348730:CDS |
ATAATAATGGCAGCTACTCA+TGG | 0.532384 | tig0010472:+16066 | Msa1348730:CDS |
GAGATTACACAAGGGAAGTA+GGG | 0.535301 | tig0010472:+14962 | Msa1348730:CDS |
ACAGAGTTGGTTGCGGCCAG+TGG | 0.543909 | tig0010472:-20422 | None:intergenic |
GATGCACTTTCCATGTCCAC+TGG | 0.544627 | tig0010472:-20290 | None:intergenic |
GTAGACAGAGGAACAAGTGC+AGG | 0.547219 | tig0010472:+20209 | Msa1348730:CDS |
GATTCCCTTCATTGCTATCA+GGG | 0.551884 | tig0010472:+20340 | Msa1348730:CDS |
TTGTCACTAGCAGTATAGCC+TGG | 0.553691 | tig0010472:-16267 | None:intergenic |
TAACGTGAGTCCAGTGGACA+TGG | 0.555563 | tig0010472:+20280 | Msa1348730:CDS |
ACCAGTTATACTAGTCATGA+CGG | 0.559335 | tig0010472:+16600 | Msa1348730:CDS |
ACGGTAGTACTTGGAATCAA+CGG | 0.561307 | tig0010472:-19168 | None:intergenic |
CGCAACCAACTCTGTTGCTG+TGG | 0.562029 | tig0010472:+20430 | Msa1348730:CDS |
TTGTTCAGGAATGCCACCAA+CGG | 0.573621 | tig0010472:-15082 | None:intergenic |
AAAACAATGGTGACTACACA+AGG | 0.576219 | tig0010472:+18988 | Msa1348730:CDS |
GCCAAATGAGCCCAATAATG+TGG | 0.579248 | tig0010472:-16854 | None:intergenic |
ACATCTCCGATATGCAAGGA+AGG | 0.579860 | tig0010472:-16824 | None:intergenic |
TGAGAAGGTATCAGCCTCGT+TGG | 0.580666 | tig0010472:-20399 | None:intergenic |
GGTTGCGGCCAGTGGTGAGA+AGG | 0.583884 | tig0010472:-20414 | None:intergenic |
TAATAATGGCAGCTACTCAT+GGG | 0.584057 | tig0010472:+16067 | Msa1348730:CDS |
TTGTTCAGGAATACCATCAA+CGG | 0.585225 | tig0010472:-19123 | None:intergenic |
GGACATGGAAAGTGCATCAG+TGG | 0.586546 | tig0010472:+20295 | Msa1348730:CDS |
TGTCTGGGTGTAGATAATAA+TGG | 0.587493 | tig0010472:+16053 | Msa1348730:intron |
GTGACTACACAAGGGACGTA+GGG | 0.588370 | tig0010472:+18997 | Msa1348730:CDS |
CGGGGAAAATCTCTTCTGGT+TGG | 0.595557 | tig0010472:-15062 | None:intergenic |
TCATAACATAGTTCACCACT+TGG | 0.603986 | tig0010472:-20489 | None:intergenic |
GCTCTTTCTGATTTGGCTGG+CGG | 0.606832 | tig0010472:+20362 | Msa1348730:CDS |
CCAGTTATACTAGTCATGAC+GGG | 0.608599 | tig0010472:+16601 | Msa1348730:CDS |
CACAGCAACAGAGTTGGTTG+CGG | 0.609393 | tig0010472:-20429 | None:intergenic |
ATTGCTAAAATCAACGAAGA+GGG | 0.614781 | tig0010472:+16186 | Msa1348730:CDS |
ATCAGCCTCGTTGGACTCTG+CGG | 0.618468 | tig0010472:-20390 | None:intergenic |
AGCAACATCTCCGATATGCA+AGG | 0.618530 | tig0010472:-16828 | None:intergenic |
AATGACCACAGCAACAGAGT+TGG | 0.629425 | tig0010472:-20435 | None:intergenic |
ATGTGCAGAGGTATGGGCAA+GGG | 0.632644 | tig0010472:+14908 | Msa1348730:intron |
AATTGCTAAAATCAACGAAG+AGG | 0.634351 | tig0010472:+16185 | Msa1348730:CDS |
ACATAGTTCACCACTTGGAG+TGG | 0.638822 | tig0010472:-20484 | None:intergenic |
TATGTGCAGAGGTATGGGCA+AGG | 0.643104 | tig0010472:+14907 | Msa1348730:intron |
ACGTTACCCTTAGAAAACAA+TGG | 0.644025 | tig0010472:+14940 | Msa1348730:CDS |
ATGCTTGACAACGACACCAA+AGG | 0.644624 | tig0010472:+20178 | Msa1348730:CDS |
AGAGCCCTGATAGCAATGAA+GGG | 0.645404 | tig0010472:-20344 | None:intergenic |
GGTGACTACACAAGGGACGT+AGG | 0.645883 | tig0010472:+18996 | Msa1348730:CDS |
TTGGTGGCATTCCTGAACAA+AGG | 0.647085 | tig0010472:+15085 | Msa1348730:CDS |
TTGATGGTATTCCTGAACAA+AGG | 0.648077 | tig0010472:+19126 | Msa1348730:CDS |
CATCTCCGATATGCAAGGAA+GGG | 0.651532 | tig0010472:-16823 | None:intergenic |
TGTCATCACACCACTCCAAG+TGG | 0.653556 | tig0010472:+20474 | Msa1348730:CDS |
CAAGACTATTCTAACGTCAG+TGG | 0.658347 | tig0010472:-14015 | None:intergenic |
TAAGTTTAACGTGAGTCCAG+TGG | 0.659074 | tig0010472:+20274 | Msa1348730:CDS |
AGTCATGACGGGATTGAGTG+TGG | 0.668616 | tig0010472:+16612 | Msa1348730:CDS |
AAAACAATGGAGATTACACA+AGG | 0.670651 | tig0010472:+14953 | Msa1348730:CDS |
TAGACAGAGGAACAAGTGCA+GGG | 0.675462 | tig0010472:+20210 | Msa1348730:CDS |
TATATGCAGAGGTATGGGCA+AGG | 0.693984 | tig0010472:+18942 | Msa1348730:intron |
AAGGTTGTGCTTGTAGACAG+AGG | 0.704702 | tig0010472:+20197 | Msa1348730:CDS |
AAACAATGGAGATTACACAA+GGG | 0.709853 | tig0010472:+14954 | Msa1348730:CDS |
ACGTTACCACTAGAAAACAA+TGG | 0.714437 | tig0010472:+18975 | Msa1348730:CDS |
AAACAATGGTGACTACACAA+GGG | 0.726560 | tig0010472:+18989 | Msa1348730:CDS |
GTTCAGGAATGCCACCAACG+GGG | 0.730088 | tig0010472:-15080 | None:intergenic |
CGGCACCGCAGAGTCCAACG+AGG | 0.744926 | tig0010472:+20385 | Msa1348730:CDS |
GGTAGTACTTGGAATCAACG+GGG | 0.827912 | tig0010472:-19166 | None:intergenic |
GGTAGTACTTGGAATCAACG+GGG | 0.836087 | tig0010472:-15125 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTATTTTATTTTATTTTTTT+TGG | - | tig0010472:15426-15445 | None:intergenic | 0.0% |
!!! | AATATATATAATTTTAATTA+TGG | - | tig0010472:18522-18541 | None:intergenic | 0.0% |
!!! | TTTCATTTAAGATATATTTA+TGG | - | tig0010472:15208-15227 | None:intergenic | 10.0% |
!! | ATATATTGTAATAGAAAAAA+AGG | - | tig0010472:17301-17320 | None:intergenic | 10.0% |
!!! | TATTACAATATATAACATTT+TGG | + | tig0010472:17308-17327 | Msa1348730:intron | 10.0% |
!!! | TGTTTTAATAAAATTACTTT+TGG | - | tig0010472:17652-17671 | None:intergenic | 10.0% |
!! | TGTAATAAAGTATAAATTAT+AGG | - | tig0010472:17945-17964 | None:intergenic | 10.0% |
!!! | TATTGATAGTTTTTTTTTAA+GGG | - | tig0010472:18617-18636 | None:intergenic | 10.0% |
!!! | ATATTGATAGTTTTTTTTTA+AGG | - | tig0010472:18618-18637 | None:intergenic | 10.0% |
!!! | CTTTTTTTTTTATTCATTTT+TGG | + | tig0010472:18820-18839 | Msa1348730:intron | 10.0% |
!! | TTTAAGTAAAATTTAATCAA+AGG | - | tig0010472:19360-19379 | None:intergenic | 10.0% |
!!! | TTTTTTTAATGAAAATTTGA+AGG | - | tig0010472:19550-19569 | None:intergenic | 10.0% |
!!! | GAGTTATTTATTTTATTTTT+TGG | + | tig0010472:19701-19720 | Msa1348730:intron | 10.0% |
!! | AAAACAAAAATAAAATTACA+CGG | + | tig0010472:20090-20109 | Msa1348730:intron | 10.0% |
!!! | TTTTCTAAGTTAAAAATAGA+CGG | - | tig0010472:14441-14460 | None:intergenic | 15.0% |
!!! | AATTGTTGACTTTTTTTATT+AGG | + | tig0010472:14652-14671 | Msa1348730:intron | 15.0% |
!! | AATATTATAGATTTGTGAAA+TGG | - | tig0010472:15370-15389 | None:intergenic | 15.0% |
!! | AAATAGATAACTTTATATGA+GGG | - | tig0010472:15686-15705 | None:intergenic | 15.0% |
!! | TAAATAGATAACTTTATATG+AGG | - | tig0010472:15687-15706 | None:intergenic | 15.0% |
!! | GACTAAATGATTAATATTTA+TGG | + | tig0010472:15903-15922 | Msa1348730:intron | 15.0% |
!! | TCATATGTATAATTTAATCT+TGG | - | tig0010472:16347-16366 | None:intergenic | 15.0% |
!!! | TAATTTTCCTCTTTTTTTTA+TGG | + | tig0010472:16531-16550 | Msa1348730:intron | 15.0% |
!! | TAAATAAATTAAAGTTGAGT+TGG | + | tig0010472:17151-17170 | Msa1348730:intron | 15.0% |
!! | AAATAAATTAAAGTTGAGTT+GGG | + | tig0010472:17152-17171 | Msa1348730:intron | 15.0% |
!! | AAATGTTATACTATTATCAA+TGG | + | tig0010472:17264-17283 | Msa1348730:intron | 15.0% |
!!! | CATTTGGTAATATTAATTTA+AGG | - | tig0010472:17591-17610 | None:intergenic | 15.0% |
!! | TAACTCAATATAAAATGATA+TGG | + | tig0010472:17690-17709 | Msa1348730:intron | 15.0% |
!! | TAAAAAAAAACTAGATATTC+AGG | + | tig0010472:17740-17759 | Msa1348730:intron | 15.0% |
!!! | TAAAAAGAAAAGCTTTTTTA+TGG | - | tig0010472:18142-18161 | None:intergenic | 15.0% |
!!! | AATCATGTAGTTTTTTTTTT+AGG | + | tig0010472:18325-18344 | Msa1348730:intron | 15.0% |
!!! | ATCATGTAGTTTTTTTTTTA+GGG | + | tig0010472:18326-18345 | Msa1348730:intron | 15.0% |
!!! | TTTTATAATTAGTAACAAAC+AGG | - | tig0010472:18386-18405 | None:intergenic | 15.0% |
!!! | TAAAATCACTTTTCTTTTTA+AGG | - | tig0010472:18426-18445 | None:intergenic | 15.0% |
!!! | ATTGATAGTTTTTTTTTAAG+GGG | - | tig0010472:18616-18635 | None:intergenic | 15.0% |
!! | AGTTAATTAATTAACTATGA+TGG | + | tig0010472:18788-18807 | Msa1348730:intron | 15.0% |
!! | AATAATATTAATATATGCAG+AGG | + | tig0010472:18931-18950 | Msa1348730:intron | 15.0% |
!!! | TCTTTGAATTTTTACATATA+TGG | - | tig0010472:19237-19256 | None:intergenic | 15.0% |
!!! | TCAATTTTTACGTATAATTA+AGG | - | tig0010472:19285-19304 | None:intergenic | 15.0% |
!!! | ATTTTACTTAAATTTGAGAT+CGG | + | tig0010472:19368-19387 | Msa1348730:intron | 15.0% |
!!! | ACTAATATCGATTTTTATTA+TGG | - | tig0010472:19449-19468 | None:intergenic | 15.0% |
!!! | TATATTGCATTTTATATGTA+GGG | - | tig0010472:19799-19818 | None:intergenic | 15.0% |
!!! | AATATAAATCGTGTTTTTAT+TGG | + | tig0010472:20024-20043 | Msa1348730:intron | 15.0% |
!! | AAGAGATAAAAAAAAAATGT+TGG | - | tig0010472:20069-20088 | None:intergenic | 15.0% |
!!! | TTTTCGAATATATATTTTTC+AGG | + | tig0010472:20121-20140 | Msa1348730:intron | 15.0% |
!! | TTTCTAAGTTAAAAATAGAC+GGG | - | tig0010472:14440-14459 | None:intergenic | 20.0% |
!!! | ATGGAAAATGACAAATTTTT+GGG | - | tig0010472:14505-14524 | None:intergenic | 20.0% |
!! | TTAGGCTAATTAATATGATT+AGG | + | tig0010472:14670-14689 | Msa1348730:intron | 20.0% |
!! | TAGGCTAATTAATATGATTA+GGG | + | tig0010472:14671-14690 | Msa1348730:intron | 20.0% |
!! | TAAAGTTATTAATTAAGCGT+TGG | - | tig0010472:14702-14721 | None:intergenic | 20.0% |
!!! | AGGAAATTGTTTCTATAAAA+TGG | - | tig0010472:14778-14797 | None:intergenic | 20.0% |
!!! | TTTTACAAGAATTGATTTTG+AGG | - | tig0010472:14798-14817 | None:intergenic | 20.0% |
!!! | ATTTATCATCGCAATTTTAA+CGG | - | tig0010472:15294-15313 | None:intergenic | 20.0% |
!! | AATGAATGTTGGAAAATTAA+AGG | - | tig0010472:15465-15484 | None:intergenic | 20.0% |
!! | TTATCTTTCTTTAAATTGCA+AGG | - | tig0010472:15631-15650 | None:intergenic | 20.0% |
!! | AATAGATAACTTTATATGAG+GGG | - | tig0010472:15685-15704 | None:intergenic | 20.0% |
!! | TTTATAGAGAATAGAATGAA+GGG | - | tig0010472:15987-16006 | None:intergenic | 20.0% |
!!! | TTTTATAGAGAATAGAATGA+AGG | - | tig0010472:15988-16007 | None:intergenic | 20.0% |
!! | TGAAATTAATTAACTTTGCA+AGG | + | tig0010472:16470-16489 | Msa1348730:intron | 20.0% |
!! | TTATTAGCCATAAAAAAAAG+AGG | - | tig0010472:16541-16560 | None:intergenic | 20.0% |
!!! | TTTAATAGTTGAGATTTTGT+TGG | - | tig0010472:17116-17135 | None:intergenic | 20.0% |
!!! | AATAAATTAAAGTTGAGTTG+GGG | + | tig0010472:17153-17172 | Msa1348730:intron | 20.0% |
!!! | GTATAACATTTTAATTCGAA+GGG | - | tig0010472:17255-17274 | None:intergenic | 20.0% |
!!! | AGTATAACATTTTAATTCGA+AGG | - | tig0010472:17256-17275 | None:intergenic | 20.0% |
!!! | TACAATATATAACATTTTGG+TGG | + | tig0010472:17311-17330 | Msa1348730:intron | 20.0% |
!! | ATATTAATGTGATCGTATAT+TGG | + | tig0010472:17424-17443 | Msa1348730:intron | 20.0% |
!! | TTATAATGCAAAATAATACG+TGG | + | tig0010472:17461-17480 | Msa1348730:intron | 20.0% |
!!! | AAATTACTTTTGGTTTATTG+TGG | - | tig0010472:17642-17661 | None:intergenic | 20.0% |
!!! | ATTTTATTAAAACAGAAGTC+AGG | + | tig0010472:17658-17677 | Msa1348730:intron | 20.0% |
!!! | GTTTTACTCTTACTTTAAAT+TGG | - | tig0010472:17818-17837 | None:intergenic | 20.0% |
!! | ATTTATAGTTACATGCATAT+TGG | + | tig0010472:17974-17993 | Msa1348730:intron | 20.0% |
!! | TTTATAGTTACATGCATATT+GGG | + | tig0010472:17975-17994 | Msa1348730:intron | 20.0% |
!!! | TAGGTAAAGATTTTTTTAGA+TGG | + | tig0010472:18089-18108 | Msa1348730:intron | 20.0% |
!!! | AATATGCAATTTCTTTTTCT+TGG | - | tig0010472:18166-18185 | None:intergenic | 20.0% |
!! | TATTTACAGGTAATTTGATT+AGG | - | tig0010472:18290-18309 | None:intergenic | 20.0% |
!!! | CATTTTTCTGTGTTTTTTTT+TGG | - | tig0010472:18652-18671 | None:intergenic | 20.0% |
!! | TATCATGATTAATATATACG+TGG | + | tig0010472:18754-18773 | Msa1348730:intron | 20.0% |
!! | ATTAGCGAATTGTATATTAA+CGG | + | tig0010472:18882-18901 | Msa1348730:intron | 20.0% |
!!! | AATTTTTACATATATGGTAC+TGG | - | tig0010472:19231-19250 | None:intergenic | 20.0% |
!!! | AATGTTTTTGTTCCAAATTT+TGG | + | tig0010472:19317-19336 | Msa1348730:intron | 20.0% |
!!! | ATATTGCATTTTATATGTAG+GGG | - | tig0010472:19798-19817 | None:intergenic | 20.0% |
!!! | GTATATTGCATTTTATATGT+AGG | - | tig0010472:19800-19819 | None:intergenic | 20.0% |
!! | CATAAAATAATACAGCATAT+TGG | + | tig0010472:19865-19884 | Msa1348730:intron | 20.0% |
!!! | TAGGAGCATATTAAATAATT+AGG | - | tig0010472:19998-20017 | None:intergenic | 20.0% |
!! | CACGATTTATATTTGTATAT+AGG | - | tig0010472:20017-20036 | None:intergenic | 20.0% |
!!! | ATTTACGCTTTATTATATTC+CGG | - | tig0010472:20586-20605 | None:intergenic | 20.0% |
!!! | GAACACATTTTTAGCAAATA+AGG | - | tig0010472:14149-14168 | None:intergenic | 25.0% |
! | TAACAAAATTACTAATCGCA+TGG | + | tig0010472:14467-14486 | Msa1348730:intron | 25.0% |
!! | CATGGAAAATGACAAATTTT+TGG | - | tig0010472:14506-14525 | None:intergenic | 25.0% |
! | TAATTAATATGATTAGGGCT+GGG | + | tig0010472:14676-14695 | Msa1348730:intron | 25.0% |
! | AGATTAACGAATTGCATATT+TGG | + | tig0010472:14846-14865 | Msa1348730:intron | 25.0% |
!! | TAATCTCCATTGTTTTCTAA+GGG | - | tig0010472:14949-14968 | None:intergenic | 25.0% |
!!! | ATTACATACCTCTAGTTTTT+TGG | - | tig0010472:15157-15176 | None:intergenic | 25.0% |
!! | CTAGAGGTATGTAATTAATT+AGG | + | tig0010472:15162-15181 | Msa1348730:intron | 25.0% |
!! | CTTTATTTCTTTCTCTCTTA+AGG | + | tig0010472:15555-15574 | Msa1348730:intron | 25.0% |
! | GATAATGCATAATATATGCA+AGG | - | tig0010472:15745-15764 | None:intergenic | 25.0% |
! | TTGGGTATTAAACAACATAA+AGG | - | tig0010472:16121-16140 | None:intergenic | 25.0% |
!! | TAATCTTGGTCCTTTTAAAT+GGG | - | tig0010472:16333-16352 | None:intergenic | 25.0% |
!! | TTAATCTTGGTCCTTTTAAA+TGG | - | tig0010472:16334-16353 | None:intergenic | 25.0% |
! | GCTCTAGTTAAAATAAACTT+TGG | - | tig0010472:16375-16394 | None:intergenic | 25.0% |
! | TCAGTGAAGATTTGTAAATT+AGG | - | tig0010472:16421-16440 | None:intergenic | 25.0% |
!!! | TCATTGTTATTTTCTGTTGA+TGG | - | tig0010472:16453-16472 | None:intergenic | 25.0% |
!!! | TTTTTTATGGCTAATAACGA+AGG | + | tig0010472:16544-16563 | Msa1348730:intron | 25.0% |
!!! | TTAAGCTTTTTCAAAGTAGA+TGG | + | tig0010472:16767-16786 | Msa1348730:CDS | 25.0% |
!! | TGTTTTATAACTATCTTCGA+AGG | + | tig0010472:17215-17234 | Msa1348730:intron | 25.0% |
! | ATTACCAAATGTGTGTTTAA+AGG | + | tig0010472:17600-17619 | Msa1348730:intron | 25.0% |
! | TTTATTGTGGAAAAATAGTG+GGG | - | tig0010472:17629-17648 | None:intergenic | 25.0% |
! | GTTTATTGTGGAAAAATAGT+GGG | - | tig0010472:17630-17649 | None:intergenic | 25.0% |
! | ATGAATTATCACATCCAAAT+TGG | + | tig0010472:17843-17862 | Msa1348730:intron | 25.0% |
!! | AAGAGACATTTTATGTGTTA+GGG | - | tig0010472:18197-18216 | None:intergenic | 25.0% |
!! | AAAGAGACATTTTATGTGTT+AGG | - | tig0010472:18198-18217 | None:intergenic | 25.0% |
! | TGTACTTAAAAGATACAAGA+TGG | + | tig0010472:18233-18252 | Msa1348730:intron | 25.0% |
! | TGGTTAATAGACACAAAATA+AGG | - | tig0010472:18502-18521 | None:intergenic | 25.0% |
! | TATTAATATATGCAGAGGTA+TGG | + | tig0010472:18936-18955 | Msa1348730:intron | 25.0% |
!! | ATTAATATATGCAGAGGTAT+GGG | + | tig0010472:18937-18956 | Msa1348730:intron | 25.0% |
! | GACATATTTAGTCCAAAATT+TGG | - | tig0010472:19332-19351 | None:intergenic | 25.0% |
! | AATGAGTAATCTCGAAAATT+TGG | - | tig0010472:19663-19682 | None:intergenic | 25.0% |
! | ATAAATAACTCTCATTCTCA+AGG | - | tig0010472:19692-19711 | None:intergenic | 25.0% |
! | ACATAGAATGAAAGAGTTAT+TGG | + | tig0010472:19840-19859 | Msa1348730:intron | 25.0% |
! | AGTAAAAATATTTCGTTGAG+TGG | - | tig0010472:19894-19913 | None:intergenic | 25.0% |
! | GTTAAACTTATTGTAGATGA+AGG | - | tig0010472:20264-20283 | None:intergenic | 25.0% |
! | GCATATAATTGCACTAATTA+CGG | - | tig0010472:20531-20550 | None:intergenic | 25.0% |
!!! | AGTCTTGTTCATTTTTCTTG+TGG | + | tig0010472:14031-14050 | Msa1348730:CDS | 30.0% |
AATTGCTAAAATCAACGAAG+AGG | + | tig0010472:14121-14140 | Msa1348730:intron | 30.0% | |
ATTGCTAAAATCAACGAAGA+GGG | + | tig0010472:14122-14141 | Msa1348730:intron | 30.0% | |
! | TCAATTTGATGTTGTTGACT+TGG | + | tig0010472:14186-14205 | Msa1348730:intron | 30.0% |
!! | ATTTTAGTGTGTTCCTTTCA+AGG | + | tig0010472:14212-14231 | Msa1348730:intron | 30.0% |
! | CTTTTCTGTGTCAATTTTGA+TGG | + | tig0010472:14249-14268 | Msa1348730:intron | 30.0% |
ATCTATCAAATTCATGTGCA+TGG | + | tig0010472:14298-14317 | Msa1348730:intron | 30.0% | |
TCTATCAAATTCATGTGCAT+GGG | + | tig0010472:14299-14318 | Msa1348730:intron | 30.0% | |
!!! | TCTCAGACTTTGTTTTTTGA+AGG | + | tig0010472:14378-14397 | Msa1348730:intron | 30.0% |
!!! | CTCAGACTTTGTTTTTTGAA+GGG | + | tig0010472:14379-14398 | Msa1348730:intron | 30.0% |
AAGAAAAACAAAAGTCTGAG+AGG | - | tig0010472:14409-14428 | None:intergenic | 30.0% | |
TAAAATTAACCTCAACTGAG+TGG | + | tig0010472:14582-14601 | Msa1348730:intron | 30.0% | |
CTAATTAATATGATTAGGGC+TGG | + | tig0010472:14675-14694 | Msa1348730:intron | 30.0% | |
CGAAGTTTGTAATAATCTGA+TGG | + | tig0010472:14869-14888 | Msa1348730:intron | 30.0% | |
! | GTAATCTCCATTGTTTTCTA+AGG | - | tig0010472:14950-14969 | None:intergenic | 30.0% |
AAAACAATGGAGATTACACA+AGG | + | tig0010472:14953-14972 | Msa1348730:CDS | 30.0% | |
AAACAATGGAGATTACACAA+GGG | + | tig0010472:14954-14973 | Msa1348730:CDS | 30.0% | |
TTTACATCAAACTTAAGTGC+TGG | + | tig0010472:15003-15022 | Msa1348730:CDS | 30.0% | |
! | GCTTTTAAATCAAAGAACGT+AGG | - | tig0010472:15340-15359 | None:intergenic | 30.0% |
TTTCTTTAAATTGCAAGGTG+GGG | - | tig0010472:15626-15645 | None:intergenic | 30.0% | |
CTTTCTTTAAATTGCAAGGT+GGG | - | tig0010472:15627-15646 | None:intergenic | 30.0% | |
TCTTTCTTTAAATTGCAAGG+TGG | - | tig0010472:15628-15647 | None:intergenic | 30.0% | |
TATCAACTGAGTTAAGTTCA+CGG | + | tig0010472:15767-15786 | Msa1348730:intron | 30.0% | |
ACAGAAAATACTAACTCCTA+CGG | + | tig0010472:15934-15953 | Msa1348730:intron | 30.0% | |
TCTATAAAAACCAACCCATT+AGG | + | tig0010472:15999-16018 | Msa1348730:intron | 30.0% | |
TATAGGAAGACAAGAAATGA+AGG | - | tig0010472:16026-16045 | None:intergenic | 30.0% | |
AATTGCTAAAATCAACGAAG+AGG | + | tig0010472:14121-14140 | Msa1348730:intron | 30.0% | |
ATTGCTAAAATCAACGAAGA+GGG | + | tig0010472:14122-14141 | Msa1348730:intron | 30.0% | |
GGTATGATTAAACCCAAATA+AGG | - | tig0010472:16213-16232 | None:intergenic | 30.0% | |
GTGAAGATTTGTAAATTAGG+TGG | - | tig0010472:16418-16437 | None:intergenic | 30.0% | |
! | ATGTTGCTATTCCACATTAT+TGG | + | tig0010472:16843-16862 | Msa1348730:CDS | 30.0% |
! | TGTTGCTATTCCACATTATT+GGG | + | tig0010472:16844-16863 | Msa1348730:CDS | 30.0% |
AGTAGAAAATACTGTATCCT+GGG | - | tig0010472:16917-16936 | None:intergenic | 30.0% | |
ACCTTGCATATATTATGCAT+TGG | + | tig0010472:15741-15760 | Msa1348730:intron | 30.0% | |
ACCAATGCATAATATATGCA+AGG | - | tig0010472:17350-17369 | None:intergenic | 30.0% | |
! | GTTAAACCTTTATTTGTTGC+TGG | - | tig0010472:17554-17573 | None:intergenic | 30.0% |
GTTTCCTTTAAACACACATT+TGG | - | tig0010472:17607-17626 | None:intergenic | 30.0% | |
GGTTTATTGTGGAAAAATAG+TGG | - | tig0010472:17631-17650 | None:intergenic | 30.0% | |
ACGTAATCAAACATTGAGAT+TGG | - | tig0010472:17790-17809 | None:intergenic | 30.0% | |
TTATCACATCCAAATTGGTA+AGG | + | tig0010472:17848-17867 | Msa1348730:intron | 30.0% | |
TATCACATCCAAATTGGTAA+GGG | + | tig0010472:17849-17868 | Msa1348730:intron | 30.0% | |
!! | TTTACATATATGGTACTGGT+TGG | - | tig0010472:19227-19246 | None:intergenic | 30.0% |
AATCTCGAAAATTTGGTTGA+CGG | - | tig0010472:19656-19675 | None:intergenic | 30.0% | |
! | ACATTTTAAATGTGGAGAAG+TGG | + | tig0010472:19751-19770 | Msa1348730:intron | 30.0% |
! | CATTTTAAATGTGGAGAAGT+GGG | + | tig0010472:19752-19771 | Msa1348730:intron | 30.0% |
! | ATTTTAAATGTGGAGAAGTG+GGG | + | tig0010472:19753-19772 | Msa1348730:intron | 30.0% |
!!! | AGATTGTGTTTTGACGTTTT+TGG | + | tig0010472:19967-19986 | Msa1348730:intron | 30.0% |
AATGTTGGATTGTCTATTTG+TGG | - | tig0010472:20054-20073 | None:intergenic | 30.0% | |
AACTAAGCACATCATACAAT+AGG | + | tig0010472:20665-20684 | Msa1348730:three_prime_UTR | 30.0% | |
! | TTTTTCTTGTGGCGTTTATG+TGG | + | tig0010472:14042-14061 | Msa1348730:CDS | 35.0% |
! | ACAACTCACGAATGCATTTT+GGG | - | tig0010472:14075-14094 | None:intergenic | 35.0% |
TCTCAGTTGCTAACTTTGTT+GGG | - | tig0010472:14333-14352 | None:intergenic | 35.0% | |
TTCTCAGTTGCTAACTTTGT+TGG | - | tig0010472:14334-14353 | None:intergenic | 35.0% | |
ATGTATCTGCACATGAGAAT+GGG | + | tig0010472:14523-14542 | Msa1348730:intron | 35.0% | |
! | TACTCACGTCTCATTTGTTA+AGG | + | tig0010472:14611-14630 | Msa1348730:intron | 35.0% |
! | ACTCACGTCTCATTTGTTAA+GGG | + | tig0010472:14612-14631 | Msa1348730:intron | 35.0% |
TATCAAGTCGAGTGTATGTT+AGG | - | tig0010472:14827-14846 | None:intergenic | 35.0% | |
TAACGATTGTATATGTGCAG+AGG | + | tig0010472:14896-14915 | Msa1348730:intron | 35.0% | |
ATTGTATATGTGCAGAGGTA+TGG | + | tig0010472:14901-14920 | Msa1348730:intron | 35.0% | |
! | TTGTATATGTGCAGAGGTAT+GGG | + | tig0010472:14902-14921 | Msa1348730:intron | 35.0% |
ACGTTACCCTTAGAAAACAA+TGG | + | tig0010472:14940-14959 | Msa1348730:CDS | 35.0% | |
ACAACCAACTCAACAATCTA+TGG | + | tig0010472:15037-15056 | Msa1348730:CDS | 35.0% | |
AAGGTAGTACTTGGAATCAA+CGG | - | tig0010472:15130-15149 | None:intergenic | 35.0% | |
TTTGGCAATAAGGTAGTACT+TGG | - | tig0010472:15139-15158 | None:intergenic | 35.0% | |
!!! | CCTCTAGTTTTTTGGCAATA+AGG | - | tig0010472:15149-15168 | None:intergenic | 35.0% |
CCTTATTGCCAAAAAACTAG+AGG | + | tig0010472:15146-15165 | Msa1348730:CDS | 35.0% | |
GGTATGTAATTAATTAGGCC+TGG | + | tig0010472:15167-15186 | Msa1348730:intron | 35.0% | |
TGGTATAGTAGTTTGAATCC+AGG | - | tig0010472:15188-15207 | None:intergenic | 35.0% | |
GTTGAGTGATGAATGAATGT+TGG | - | tig0010472:15476-15495 | None:intergenic | 35.0% | |
TAACTAGAACAACGTTTACG+TGG | + | tig0010472:15793-15812 | Msa1348730:intron | 35.0% | |
CAAGAAATGAAGGACCTAAT+GGG | - | tig0010472:16016-16035 | None:intergenic | 35.0% | |
ACAAGAAATGAAGGACCTAA+TGG | - | tig0010472:16017-16036 | None:intergenic | 35.0% | |
TGTCTGGGTGTAGATAATAA+TGG | + | tig0010472:16053-16072 | Msa1348730:intron | 35.0% | |
ATAATAATGGCAGCTACTCA+TGG | + | tig0010472:16066-16085 | Msa1348730:CDS | 35.0% | |
TAATAATGGCAGCTACTCAT+GGG | + | tig0010472:16067-16086 | Msa1348730:CDS | 35.0% | |
! | ACAACTCACGAATGCATTTT+GGG | - | tig0010472:14075-14094 | None:intergenic | 35.0% |
GGGTCAAGTTCAAAAGAATT+TGG | - | tig0010472:16234-16253 | None:intergenic | 35.0% | |
! | GACAACATCATAGATTTTGC+AGG | + | tig0010472:16285-16304 | Msa1348730:CDS | 35.0% |
TTATGGCTAATAACGAAGGA+AGG | + | tig0010472:16548-16567 | Msa1348730:intron | 35.0% | |
!! | AGATTTCGTTTTGGATCCAT+TGG | + | tig0010472:16571-16590 | Msa1348730:CDS | 35.0% |
ACCAGTTATACTAGTCATGA+CGG | + | tig0010472:16600-16619 | Msa1348730:CDS | 35.0% | |
GTAGATGGAGTTGTTCATTA+CGG | + | tig0010472:16782-16801 | Msa1348730:CDS | 35.0% | |
TAGATGGAGTTGTTCATTAC+GGG | + | tig0010472:16783-16802 | Msa1348730:CDS | 35.0% | |
CAGTAGAAAATACTGTATCC+TGG | - | tig0010472:16918-16937 | None:intergenic | 35.0% | |
!!! | CTATATCTCAAGCTAGCTTT+TGG | + | tig0010472:17076-17095 | Msa1348730:intron | 35.0% |
TGCATAATATATGCAAGGTC+CGG | - | tig0010472:17345-17364 | None:intergenic | 35.0% | |
TAGACACCAGCAACAAATAA+AGG | + | tig0010472:17545-17564 | Msa1348730:intron | 35.0% | |
ATTGAGAGAAACACACTTCA+CGG | + | tig0010472:17890-17909 | Msa1348730:intron | 35.0% | |
AGAAAAATGACGTTAGTGCT+AGG | + | tig0010472:18663-18682 | Msa1348730:intron | 35.0% | |
AGCGAATTGTATATTAACGG+TGG | + | tig0010472:18885-18904 | Msa1348730:intron | 35.0% | |
GCGAATTGTATATTAACGGT+GGG | + | tig0010472:18886-18905 | Msa1348730:intron | 35.0% | |
ACGTTACCACTAGAAAACAA+TGG | + | tig0010472:18975-18994 | Msa1348730:CDS | 35.0% | |
! | TAGTCACCATTGTTTTCTAG+TGG | - | tig0010472:18984-19003 | None:intergenic | 35.0% |
AAAACAATGGTGACTACACA+AGG | + | tig0010472:18988-19007 | Msa1348730:CDS | 35.0% | |
AAACAATGGTGACTACACAA+GGG | + | tig0010472:18989-19008 | Msa1348730:CDS | 35.0% | |
ACAATCATCTCAACAACCTT+TGG | + | tig0010472:19078-19097 | Msa1348730:CDS | 35.0% | |
TTGTTCAGGAATACCATCAA+CGG | - | tig0010472:19126-19145 | None:intergenic | 35.0% | |
! | TTGATGGTATTCCTGAACAA+AGG | + | tig0010472:19126-19145 | Msa1348730:CDS | 35.0% |
ATCTCGAAAATTTGGTTGAC+GGG | - | tig0010472:19655-19674 | None:intergenic | 35.0% | |
! | GACCTCACACATTTTAAATG+TGG | + | tig0010472:19743-19762 | Msa1348730:intron | 35.0% |
! | CTCCACATTTAAAATGTGTG+AGG | - | tig0010472:19748-19767 | None:intergenic | 35.0% |
! | GCATTTTATATGTAGGGGTT+GGG | - | tig0010472:19793-19812 | None:intergenic | 35.0% |
! | TGCATTTTATATGTAGGGGT+TGG | - | tig0010472:19794-19813 | None:intergenic | 35.0% |
TTGGATTGTCTATTTGTGGT+CGG | - | tig0010472:20050-20069 | None:intergenic | 35.0% | |
CTCTTATATGCTTGCAACAA+AGG | + | tig0010472:20318-20337 | Msa1348730:CDS | 35.0% | |
TCATAACATAGTTCACCACT+TGG | - | tig0010472:20492-20511 | None:intergenic | 35.0% | |
CATAGACAACAACTTTGTTC+TGG | + | tig0010472:20552-20571 | Msa1348730:three_prime_UTR | 35.0% | |
CAAGACTATTCTAACGTCAG+TGG | - | tig0010472:14018-14037 | None:intergenic | 40.0% | |
! | CACAACTCACGAATGCATTT+TGG | - | tig0010472:14076-14095 | None:intergenic | 40.0% |
ATCGAACATGAGACCTTGAA+AGG | - | tig0010472:14228-14247 | None:intergenic | 40.0% | |
CATTCTCATGTGCAGATACA+TGG | - | tig0010472:14524-14543 | None:intergenic | 40.0% | |
CATGTATCTGCACATGAGAA+TGG | + | tig0010472:14522-14541 | Msa1348730:intron | 40.0% | |
GAGATTACACAAGGGAAGTA+GGG | + | tig0010472:14962-14981 | Msa1348730:CDS | 40.0% | |
GGTACCATAGATTGTTGAGT+TGG | - | tig0010472:15044-15063 | None:intergenic | 40.0% | |
AACAAAGGCAACATGCTCTT+TGG | + | tig0010472:15100-15119 | Msa1348730:CDS | 40.0% | |
ACAAAGGCAACATGCTCTTT+GGG | + | tig0010472:15101-15120 | Msa1348730:CDS | 40.0% | |
AGGTAGTACTTGGAATCAAC+GGG | - | tig0010472:15129-15148 | None:intergenic | 40.0% | |
! | AAATGAAGGACCTAATGGGT+TGG | - | tig0010472:16012-16031 | None:intergenic | 40.0% |
TTCCTATATTGCGTGTGTCT+GGG | + | tig0010472:16038-16057 | Msa1348730:intron | 40.0% | |
! | CACAACTCACGAATGCATTT+TGG | - | tig0010472:14076-14095 | None:intergenic | 40.0% |
! | AACGAAGAGGGTCCTTATTT+GGG | + | tig0010472:14134-14153 | Msa1348730:intron | 40.0% |
!! | AGCCTGGATTTTGAAGAAGA+GGG | - | tig0010472:16254-16273 | None:intergenic | 40.0% |
!! | TAGCCTGGATTTTGAAGAAG+AGG | - | tig0010472:16255-16274 | None:intergenic | 40.0% |
TCTATTCCGGCCCATTTAAA+AGG | + | tig0010472:16320-16339 | Msa1348730:intron | 40.0% | |
! | GAAGGAAGGAGATTTCGTTT+TGG | + | tig0010472:16562-16581 | Msa1348730:intron | 40.0% |
!! | TATAACTGGTTTGTCGCCAA+TGG | - | tig0010472:16590-16609 | None:intergenic | 40.0% |
CCAGTTATACTAGTCATGAC+GGG | + | tig0010472:16601-16620 | Msa1348730:CDS | 40.0% | |
TCCACATTATTGGGCTCATT+TGG | + | tig0010472:16853-16872 | Msa1348730:CDS | 40.0% | |
TACAGTCCACAATAATTCCC+AGG | + | tig0010472:16897-16916 | Msa1348730:intron | 40.0% | |
CTGTATCCTGGGAATTATTG+TGG | - | tig0010472:16906-16925 | None:intergenic | 40.0% | |
!!! | CATTTTGGTGGTGTGAATTC+CGG | + | tig0010472:17323-17342 | Msa1348730:intron | 40.0% |
GCTGGTGTCTATAATGACTA+GGG | - | tig0010472:17536-17555 | None:intergenic | 40.0% | |
TGCTGGTGTCTATAATGACT+AGG | - | tig0010472:17537-17556 | None:intergenic | 40.0% | |
GATTGGACTCTCGAATTGAT+CGG | - | tig0010472:17773-17792 | None:intergenic | 40.0% | |
CGATTTCTCCCTTACCAATT+TGG | - | tig0010472:17860-17879 | None:intergenic | 40.0% | |
! | ACACACTTCACGGTTCTAAT+TGG | + | tig0010472:17900-17919 | Msa1348730:intron | 40.0% |
! | CACACTTCACGGTTCTAATT+GGG | + | tig0010472:17901-17920 | Msa1348730:intron | 40.0% |
TTAGTGCTAGGACAAATGTC+TGG | + | tig0010472:18675-18694 | Msa1348730:intron | 40.0% | |
TCAACGGGAAAAATCTCTTC+TGG | - | tig0010472:19110-19129 | None:intergenic | 40.0% | |
! | GAAGAGATTTTTCCCGTTGA+TGG | + | tig0010472:19110-19129 | Msa1348730:CDS | 40.0% |
TGTTCAGGAATACCATCAAC+GGG | - | tig0010472:19125-19144 | None:intergenic | 40.0% | |
AACAAAGGCAACATGCTCTT+TGG | + | tig0010472:15100-15119 | Msa1348730:CDS | 40.0% | |
ACAAAGGCAACATGCTCTTT+GGG | + | tig0010472:15101-15120 | Msa1348730:CDS | 40.0% | |
ACGGTAGTACTTGGAATCAA+CGG | - | tig0010472:19171-19190 | None:intergenic | 40.0% | |
TTTGGCAATACGGTAGTACT+TGG | - | tig0010472:19180-19199 | None:intergenic | 40.0% | |
!!! | CCTCGAGTTTTTTGGCAATA+CGG | - | tig0010472:19190-19209 | None:intergenic | 40.0% |
TTGCCAAAAAACTCGAGGTA+TGG | + | tig0010472:19192-19211 | Msa1348730:intron | 40.0% | |
!!! | AGACCATACCTCGAGTTTTT+TGG | - | tig0010472:19198-19217 | None:intergenic | 40.0% |
AAAAACTCGAGGTATGGTCT+AGG | + | tig0010472:19198-19217 | Msa1348730:intron | 40.0% | |
TAAGTTTAACGTGAGTCCAG+TGG | + | tig0010472:20274-20293 | Msa1348730:CDS | 40.0% | |
GATTCCCTTCATTGCTATCA+GGG | + | tig0010472:20340-20359 | Msa1348730:CDS | 40.0% | |
TATCAGGGCTCTTTCTGATT+TGG | + | tig0010472:20355-20374 | Msa1348730:CDS | 40.0% | |
GACAACAACTTTGTTCTGGT+TGG | + | tig0010472:20556-20575 | Msa1348730:three_prime_UTR | 40.0% | |
AGCAACTGAGAAGTCACTCA+TGG | + | tig0010472:14342-14361 | Msa1348730:intron | 45.0% | |
GTAAAACGACCACTCAGTTG+AGG | - | tig0010472:14594-14613 | None:intergenic | 45.0% | |
TCTAAGGGTAACGTGTCATC+AGG | - | tig0010472:14934-14953 | None:intergenic | 45.0% | |
GGAGATTACACAAGGGAAGT+AGG | + | tig0010472:14961-14980 | Msa1348730:CDS | 45.0% | |
TTGTTCAGGAATGCCACCAA+CGG | - | tig0010472:15085-15104 | None:intergenic | 45.0% | |
! | TTGGTGGCATTCCTGAACAA+AGG | + | tig0010472:15085-15104 | Msa1348730:CDS | 45.0% |
AGAGCATGTTGCCTTTGTTC+AGG | - | tig0010472:15099-15118 | None:intergenic | 45.0% | |
GGTAGTACTTGGAATCAACG+GGG | - | tig0010472:15128-15147 | None:intergenic | 45.0% | |
CTTCCTATATTGCGTGTGTC+TGG | + | tig0010472:16037-16056 | Msa1348730:intron | 45.0% | |
CAACGAAGAGGGTCCTTATT+TGG | + | tig0010472:14133-14152 | Msa1348730:intron | 45.0% | |
GACCCTCTTCTTCAAAATCC+AGG | + | tig0010472:16249-16268 | Msa1348730:CDS | 45.0% | |
TTGTCACTAGCAGTATAGCC+TGG | - | tig0010472:16270-16289 | None:intergenic | 45.0% | |
GTAAGTGCATGCGTCTATTC+CGG | + | tig0010472:16307-16326 | Msa1348730:intron | 45.0% | |
! | CTTGGTCCTTTTAAATGGGC+CGG | - | tig0010472:16329-16348 | None:intergenic | 45.0% |
AGAGCTGCACCTAGTAAACA+AGG | + | tig0010472:16390-16409 | Msa1348730:intron | 45.0% | |
GAGCTGCACCTAGTAAACAA+GGG | + | tig0010472:16391-16410 | Msa1348730:intron | 45.0% | |
! | TAGGTGGTCCCTTGTTTACT+AGG | - | tig0010472:16402-16421 | None:intergenic | 45.0% |
CCCGTCATGACTAGTATAAC+TGG | - | tig0010472:16604-16623 | None:intergenic | 45.0% | |
GTTGTTCATTACGGGATTGC+TGG | + | tig0010472:16791-16810 | Msa1348730:CDS | 45.0% | |
GCAAACCCTTCCTTGCATAT+CGG | + | tig0010472:16818-16837 | Msa1348730:CDS | 45.0% | |
CATCTCCGATATGCAAGGAA+GGG | - | tig0010472:16826-16845 | None:intergenic | 45.0% | |
ACATCTCCGATATGCAAGGA+AGG | - | tig0010472:16827-16846 | None:intergenic | 45.0% | |
AGCAACATCTCCGATATGCA+AGG | - | tig0010472:16831-16850 | None:intergenic | 45.0% | |
GCCAAATGAGCCCAATAATG+TGG | - | tig0010472:16857-16876 | None:intergenic | 45.0% | |
ATTGGGCTCATTTGGCACTT+TGG | + | tig0010472:16861-16880 | Msa1348730:CDS | 45.0% | |
CGTCTCATAACTTACCTCTC+AGG | + | tig0010472:18704-18723 | Msa1348730:intron | 45.0% | |
! | TATATGCAGAGGTATGGGCA+AGG | + | tig0010472:18942-18961 | Msa1348730:intron | 45.0% |
GTCAGCAGCACTTATGTTTG+AGG | - | tig0010472:19045-19064 | None:intergenic | 45.0% | |
! | TCTCTTCTGGTTGGTACCAA+AGG | - | tig0010472:19097-19116 | None:intergenic | 45.0% |
CGGGAAAAATCTCTTCTGGT+TGG | - | tig0010472:19106-19125 | None:intergenic | 45.0% | |
AGAGCATGTTGCCTTTGTTC+AGG | - | tig0010472:15099-15118 | None:intergenic | 45.0% | |
GGTAGTACTTGGAATCAACG+GGG | - | tig0010472:15128-15147 | None:intergenic | 45.0% | |
CGGTAGTACTTGGAATCAAC+GGG | - | tig0010472:19170-19189 | None:intergenic | 45.0% | |
CCGTATTGCCAAAAAACTCG+AGG | + | tig0010472:19187-19206 | Msa1348730:CDS | 45.0% | |
GTCTGTGAGCTTAGCTCATT+TGG | - | tig0010472:19822-19841 | None:intergenic | 45.0% | |
ATGCTTGACAACGACACCAA+AGG | + | tig0010472:20178-20197 | Msa1348730:CDS | 45.0% | |
CTGTCTACAAGCACAACCTT+TGG | - | tig0010472:20197-20216 | None:intergenic | 45.0% | |
AAGGTTGTGCTTGTAGACAG+AGG | + | tig0010472:20197-20216 | Msa1348730:CDS | 45.0% | |
TAGACAGAGGAACAAGTGCA+GGG | + | tig0010472:20210-20229 | Msa1348730:CDS | 45.0% | |
GGATTCCCTTCATTGCTATC+AGG | + | tig0010472:20339-20358 | Msa1348730:CDS | 45.0% | |
AGAGCCCTGATAGCAATGAA+GGG | - | tig0010472:20347-20366 | None:intergenic | 45.0% | |
AAGAGCCCTGATAGCAATGA+AGG | - | tig0010472:20348-20367 | None:intergenic | 45.0% | |
AATGACCACAGCAACAGAGT+TGG | - | tig0010472:20438-20457 | None:intergenic | 45.0% | |
ACATAGTTCACCACTTGGAG+TGG | - | tig0010472:20487-20506 | None:intergenic | 45.0% | |
! | CTTTGTTCTGGTTGGTTGTC+CGG | + | tig0010472:20564-20583 | Msa1348730:three_prime_UTR | 45.0% |
!! | GATTATTTAATATTAATTAT+TGG | + | tig0010472:16659-16678 | Msa1348730:intron | 5.0% |
!!! | ATCTTTAAAATTATAAATTT+AGG | + | tig0010472:18070-18089 | Msa1348730:intron | 5.0% |
!! | TAAAAAAAAAAAATATTTAC+AGG | - | tig0010472:18303-18322 | None:intergenic | 5.0% |
!!! | AATAAAAAAAATCATATTTT+TGG | - | tig0010472:19475-19494 | None:intergenic | 5.0% |
! | TATGTGCAGAGGTATGGGCA+AGG | + | tig0010472:14907-14926 | Msa1348730:intron | 50.0% |
! | ATGTGCAGAGGTATGGGCAA+GGG | + | tig0010472:14908-14927 | Msa1348730:intron | 50.0% |
CGGGGAAAATCTCTTCTGGT+TGG | - | tig0010472:15065-15084 | None:intergenic | 50.0% | |
CCAACGGGGAAAATCTCTTC+TGG | - | tig0010472:15069-15088 | None:intergenic | 50.0% | |
! | CCAGAAGAGATTTTCCCCGT+TGG | + | tig0010472:15066-15085 | Msa1348730:CDS | 50.0% |
! | GAAGAGATTTTCCCCGTTGG+TGG | + | tig0010472:15069-15088 | Msa1348730:CDS | 50.0% |
TGTTCAGGAATGCCACCAAC+GGG | - | tig0010472:15084-15103 | None:intergenic | 50.0% | |
AGAATGAAGGGTAACCCCCT+TGG | - | tig0010472:15975-15994 | None:intergenic | 50.0% | |
CACCCAGACACACGCAATAT+AGG | - | tig0010472:16043-16062 | None:intergenic | 50.0% | |
! | AGTCATGACGGGATTGAGTG+TGG | + | tig0010472:16612-16631 | Msa1348730:CDS | 50.0% |
GGGATTGAGTGTGGTACGTA+TGG | + | tig0010472:16621-16640 | Msa1348730:intron | 50.0% | |
!! | CTCATTTGGCACTTTGGAGC+TGG | + | tig0010472:16867-16886 | Msa1348730:CDS | 50.0% |
CTGCGTGAGCTTAACTCAGT+TGG | - | tig0010472:17377-17396 | None:intergenic | 50.0% | |
GAGTTAAGCTCACGCAGACT+TGG | + | tig0010472:17380-17399 | Msa1348730:intron | 50.0% | |
GTGACTACACAAGGGACGTA+GGG | + | tig0010472:18997-19016 | Msa1348730:CDS | 50.0% | |
GTAGACAGAGGAACAAGTGC+AGG | + | tig0010472:20209-20228 | Msa1348730:CDS | 50.0% | |
TAACGTGAGTCCAGTGGACA+TGG | + | tig0010472:20280-20299 | Msa1348730:CDS | 50.0% | |
GATGCACTTTCCATGTCCAC+TGG | - | tig0010472:20293-20312 | None:intergenic | 50.0% | |
! | GGACATGGAAAGTGCATCAG+TGG | + | tig0010472:20295-20314 | Msa1348730:CDS | 50.0% |
!! | AGGGCTCTTTCTGATTTGGC+TGG | + | tig0010472:20359-20378 | Msa1348730:CDS | 50.0% |
!! | GCTCTTTCTGATTTGGCTGG+CGG | + | tig0010472:20362-20381 | Msa1348730:CDS | 50.0% |
!! | TGAGAAGGTATCAGCCTCGT+TGG | - | tig0010472:20402-20421 | None:intergenic | 50.0% |
! | CACAGCAACAGAGTTGGTTG+CGG | - | tig0010472:20432-20451 | None:intergenic | 50.0% |
TGTCATCACACCACTCCAAG+TGG | + | tig0010472:20474-20493 | Msa1348730:CDS | 50.0% | |
GTTCAGGAATGCCACCAACG+GGG | - | tig0010472:15083-15102 | None:intergenic | 55.0% | |
!! | TTTGGCACTTTGGAGCTGGC+AGG | + | tig0010472:16871-16890 | Msa1348730:CDS | 55.0% |
GCTCTCACGTCGTCATTGCT+AGG | + | tig0010472:18726-18745 | Msa1348730:intron | 55.0% | |
GGTGACTACACAAGGGACGT+AGG | + | tig0010472:18996-19015 | Msa1348730:CDS | 55.0% | |
! | ATGTGGAGAAGTGGGGTGTC+AGG | + | tig0010472:19760-19779 | Msa1348730:intron | 55.0% |
! | TGTGGAGAAGTGGGGTGTCA+GGG | + | tig0010472:19761-19780 | Msa1348730:intron | 55.0% |
!! | CTTTCTGATTTGGCTGGCGG+CGG | + | tig0010472:20365-20384 | Msa1348730:CDS | 55.0% |
ATCAGCCTCGTTGGACTCTG+CGG | - | tig0010472:20393-20412 | None:intergenic | 55.0% | |
GGCTGATACCTTCTCACCAC+TGG | + | tig0010472:20406-20425 | Msa1348730:CDS | 55.0% | |
CGCAACCAACTCTGTTGCTG+TGG | + | tig0010472:20430-20449 | Msa1348730:CDS | 55.0% | |
GCCTAGCCAGACCAAGCCAA+GGG | + | tig0010472:15956-15975 | Msa1348730:intron | 60.0% | |
CCTAGCCAGACCAAGCCAAG+GGG | + | tig0010472:15957-15976 | Msa1348730:intron | 60.0% | |
CTAGCCAGACCAAGCCAAGG+GGG | + | tig0010472:15958-15977 | Msa1348730:intron | 60.0% | |
!! | GTAACCCCCTTGGCTTGGTC+TGG | - | tig0010472:15965-15984 | None:intergenic | 60.0% |
GAAGGGTAACCCCCTTGGCT+TGG | - | tig0010472:15970-15989 | None:intergenic | 60.0% | |
TGACGACGTGAGAGCCTGAG+AGG | - | tig0010472:18721-18740 | None:intergenic | 60.0% | |
! | ACAGAGTTGGTTGCGGCCAG+TGG | - | tig0010472:20425-20444 | None:intergenic | 60.0% |
GCTTGGTCTGGCTAGGCCGT+AGG | - | tig0010472:15953-15972 | None:intergenic | 65.0% | |
GGCCTAGCCAGACCAAGCCA+AGG | + | tig0010472:15955-15974 | Msa1348730:intron | 65.0% | |
!! | CCCCTTGGCTTGGTCTGGCT+AGG | - | tig0010472:15960-15979 | None:intergenic | 65.0% |
GGTTGCGGCCAGTGGTGAGA+AGG | - | tig0010472:20417-20436 | None:intergenic | 65.0% | |
CGGCACCGCAGAGTCCAACG+AGG | + | tig0010472:20385-20404 | Msa1348730:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0010472 | gene | 14008 | 20713 | 14008 | ID=Msa1348730;Name=Msa1348730 |
tig0010472 | mRNA | 14008 | 20713 | 14008 | ID=Msa1348730-mRNA-1;Parent=Msa1348730;Name=Msa1348730-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0.66|0.57|1|1|1|7|214|469 |
tig0010472 | exon | 14008 | 14085 | 14008 | ID=Msa1348730-mRNA-1:exon:6553;Parent=Msa1348730-mRNA-1 |
tig0010472 | exon | 14916 | 15167 | 14916 | ID=Msa1348730-mRNA-1:exon:6554;Parent=Msa1348730-mRNA-1 |
tig0010472 | exon | 16066 | 16306 | 16066 | ID=Msa1348730-mRNA-1:exon:6555;Parent=Msa1348730-mRNA-1 |
tig0010472 | exon | 16566 | 16633 | 16566 | ID=Msa1348730-mRNA-1:exon:6556;Parent=Msa1348730-mRNA-1 |
tig0010472 | exon | 16737 | 16892 | 16737 | ID=Msa1348730-mRNA-1:exon:6557;Parent=Msa1348730-mRNA-1 |
tig0010472 | exon | 18951 | 19208 | 18951 | ID=Msa1348730-mRNA-1:exon:6558;Parent=Msa1348730-mRNA-1 |
tig0010472 | exon | 20143 | 20713 | 20143 | ID=Msa1348730-mRNA-1:exon:6559;Parent=Msa1348730-mRNA-1 |
tig0010472 | CDS | 14008 | 14085 | 14008 | ID=Msa1348730-mRNA-1:cds;Parent=Msa1348730-mRNA-1 |
tig0010472 | CDS | 14916 | 15167 | 14916 | ID=Msa1348730-mRNA-1:cds;Parent=Msa1348730-mRNA-1 |
tig0010472 | CDS | 16066 | 16306 | 16066 | ID=Msa1348730-mRNA-1:cds;Parent=Msa1348730-mRNA-1 |
tig0010472 | CDS | 16566 | 16633 | 16566 | ID=Msa1348730-mRNA-1:cds;Parent=Msa1348730-mRNA-1 |
tig0010472 | CDS | 16737 | 16892 | 16737 | ID=Msa1348730-mRNA-1:cds;Parent=Msa1348730-mRNA-1 |
tig0010472 | CDS | 18951 | 19208 | 18951 | ID=Msa1348730-mRNA-1:cds;Parent=Msa1348730-mRNA-1 |
tig0010472 | CDS | 20143 | 20499 | 20143 | ID=Msa1348730-mRNA-1:cds;Parent=Msa1348730-mRNA-1 |
tig0010472 | three_prime_UTR | 20500 | 20713 | 20500 | ID=Msa1348730-mRNA-1:three_prime_utr;Parent=Msa1348730-mRNA-1 |
Gene Sequence |
Protein sequence |