Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0477790 | XP_013462014.1 | 96.639 | 357 | 12 | 0 | 1 | 357 | 1 | 357 | 0.0 | 718 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0477790 | sp|Q07469|BSPA_POPDE | 29.643 | 280 | 165 | 7 | 70 | 347 | 52 | 301 | 8.15e-35 | 132 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0477790 | A0A072V1Y8 | 96.639 | 357 | 12 | 0 | 1 | 357 | 1 | 357 | 0.0 | 718 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0387090 | Msa0477790 | 0.830016 | 3.723752e-55 | -8.615850e-47 |
| Msa0387110 | Msa0477790 | 0.874471 | 6.583736e-68 | -8.615850e-47 |
| Msa0433880 | Msa0477790 | 0.952427 | 2.480315e-110 | -8.615850e-47 |
| Msa0477790 | Msa1348730 | 0.879802 | 9.251007e-70 | -8.615850e-47 |
| Msa0477790 | Msa1348780 | 0.849588 | 2.935900e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0477790 | MtrunA17_Chr3g0140051 | 96.639 | 357 | 12 | 0 | 1 | 357 | 1 | 357 | 0.0 | 718 |
| Msa0477790 | MtrunA17_Chr3g0140061 | 96.317 | 353 | 13 | 0 | 1 | 353 | 1 | 353 | 0.0 | 707 |
| Msa0477790 | MtrunA17_Chr6g0486081 | 52.698 | 315 | 140 | 4 | 38 | 350 | 29 | 336 | 2.92e-122 | 355 |
| Msa0477790 | MtrunA17_Chr6g0486101 | 50.794 | 315 | 141 | 4 | 38 | 350 | 30 | 332 | 8.55e-117 | 342 |
| Msa0477790 | MtrunA17_Chr6g0486091 | 49.524 | 315 | 145 | 4 | 38 | 350 | 31 | 333 | 6.40e-112 | 329 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0477790 | AT4G28940.1 | 57.321 | 321 | 126 | 3 | 38 | 356 | 33 | 344 | 8.41e-139 | 398 |
| Msa0477790 | AT4G28940.2 | 58.621 | 261 | 99 | 2 | 96 | 356 | 1 | 252 | 3.48e-113 | 330 |
| Msa0477790 | AT4G24340.1 | 37.261 | 314 | 174 | 5 | 39 | 350 | 43 | 335 | 1.42e-66 | 214 |
| Msa0477790 | AT4G24350.1 | 36.306 | 314 | 180 | 6 | 39 | 350 | 38 | 333 | 4.01e-64 | 207 |
| Msa0477790 | AT4G24350.2 | 34.444 | 270 | 159 | 5 | 39 | 306 | 38 | 291 | 7.20e-51 | 171 |
| Msa0477790 | AT4G24350.3 | 36.667 | 240 | 134 | 5 | 111 | 350 | 1 | 222 | 2.22e-48 | 163 |
| Msa0477790 | AT4G24350.4 | 34.634 | 205 | 118 | 4 | 102 | 306 | 9 | 197 | 1.21e-37 | 134 |
Find 106 sgRNAs with CRISPR-Local
Find 276 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACAAAGAGGGTCCTTATT+TGG | 0.081653 | 3_3:+82161743 | Msa0477790:CDS |
| CACAACTCACGAATGCATTT+TGG | 0.147904 | 3_3:-82161683 | None:intergenic |
| GGATTCCTTTCATTGCTATT+AGG | 0.186228 | 3_3:+82165716 | Msa0477790:CDS |
| CTGGCTGTTAAATTAACTTT+TGG | 0.225564 | 3_3:-82166248 | None:intergenic |
| ATGTTGCTATTCCACATTAT+TGG | 0.227186 | 3_3:+82162404 | Msa0477790:CDS |
| CTTCCTATATTGCGTGTGTC+TGG | 0.268657 | 3_3:+82161583 | Msa0477790:five_prime_UTR |
| AACAAAGGCAACATGCTCTT+TGG | 0.272171 | 3_3:+82164483 | Msa0477790:CDS |
| TGTTGCTATTCCACATTATT+GGG | 0.272480 | 3_3:+82162405 | Msa0477790:CDS |
| GGTATGATTAAACCCAAATA+AGG | 0.283272 | 3_3:-82161756 | None:intergenic |
| GATTCCTTTCATTGCTATTA+GGG | 0.293777 | 3_3:+82165717 | Msa0477790:CDS |
| CTTTGTTCTGGTTGGTTGTT+CGG | 0.307523 | 3_3:+82165940 | Msa0477790:three_prime_UTR |
| GCAAACCCTTCCTTGCATAT+TGG | 0.314962 | 3_3:+82162379 | Msa0477790:CDS |
| GGGTCAAGTTCAAAAGAATT+TGG | 0.317467 | 3_3:-82161777 | None:intergenic |
| AACAAAGAGGGTCCTTATTT+GGG | 0.323637 | 3_3:+82161744 | Msa0477790:CDS |
| GCCTATAATTGCACTAATTA+CGG | 0.325218 | 3_3:-82165902 | None:intergenic |
| CTCATTTGGCACTTTGGAGC+TGG | 0.328354 | 3_3:+82162428 | Msa0477790:CDS |
| TCCACATTATTGGGCTCATT+TGG | 0.331452 | 3_3:+82162414 | Msa0477790:CDS |
| TTGGGTATTAAACAACATAA+AGG | 0.346307 | 3_3:-82161664 | None:intergenic |
| AGAGCATGTTGCCTTTGTTC+AGG | 0.348607 | 3_3:-82164479 | None:intergenic |
| CGTAGACAACAACTTTGTTC+TGG | 0.366288 | 3_3:+82165928 | Msa0477790:three_prime_UTR |
| TATTAGGGCTCTCTCTGATT+TGG | 0.368111 | 3_3:+82165732 | Msa0477790:CDS |
| GTTGTTCATTACGGGATTGC+TGG | 0.372697 | 3_3:+82162352 | Msa0477790:CDS |
| TAGATGGAGTTGTTCATTAC+GGG | 0.375885 | 3_3:+82162344 | Msa0477790:CDS |
| TTGAGAAATGAAGGACCTAA+TGG | 0.379148 | 3_3:-82161544 | None:intergenic |
| CCCGTCATGACCAGTATAAC+TGG | 0.395242 | 3_3:-82162158 | None:intergenic |
| CTTTCTACAAGCACAACCTT+TGG | 0.403773 | 3_3:-82165571 | None:intergenic |
| CGGTAGTACTTGGAATCAAC+GGG | 0.404829 | 3_3:-82164509 | None:intergenic |
| TCCGTAATTAGTGCAATTAT+AGG | 0.416299 | 3_3:+82165901 | Msa0477790:three_prime_UTR |
| ATTGGGCTCATTTGGCACTT+TGG | 0.416383 | 3_3:+82162422 | Msa0477790:CDS |
| GTCAGCAGCACTTATGTTTG+AGG | 0.420611 | 3_3:-82164384 | None:intergenic |
| GTAGATGGAGTTGTTCATTA+CGG | 0.424060 | 3_3:+82162343 | Msa0477790:CDS |
| ACAAAGGCAACATGCTCTTT+GGG | 0.425980 | 3_3:+82164484 | Msa0477790:CDS |
| ACAATCATCTCAACAACCTT+TGG | 0.430065 | 3_3:+82164420 | Msa0477790:CDS |
| TTTGGCAATACGGTAGTACT+TGG | 0.430210 | 3_3:-82164519 | None:intergenic |
| GAAGGAAGGAGATTTCGTTT+TGG | 0.431427 | 3_3:+82162119 | Msa0477790:intron |
| GTTGAATTTGTTGTAGATGA+AGG | 0.432944 | 3_3:-82165638 | None:intergenic |
| CTCTCTGATTTGGCCGGCGG+CGG | 0.448179 | 3_3:+82165742 | Msa0477790:CDS |
| TTCCTATATTGCGTGTGTCT+GGG | 0.450123 | 3_3:+82161584 | Msa0477790:five_prime_UTR |
| TGAGAAATGAAGGACCTAAT+GGG | 0.450926 | 3_3:-82161543 | None:intergenic |
| CACCCAGACACACGCAATAT+AGG | 0.451282 | 3_3:-82161586 | None:intergenic |
| TATTAATATATGCAGAGGTA+TGG | 0.462558 | 3_3:+82164278 | Msa0477790:intron |
| TGTTCAGGAATACCATCAAC+GGG | 0.480731 | 3_3:-82164464 | None:intergenic |
| TTTGGCACTTTGGAGCTGGC+AGG | 0.483139 | 3_3:+82162432 | Msa0477790:CDS |
| TCTCTTCTGGTTGGTACCAA+AGG | 0.484946 | 3_3:-82164436 | None:intergenic |
| GACCACAGCAACAGAGTTAG+TGG | 0.492352 | 3_3:-82165809 | None:intergenic |
| TGGCGACAAACCAGTTATAC+TGG | 0.494462 | 3_3:+82162148 | Msa0477790:CDS |
| GACAACAACTTTGTTCTGGT+TGG | 0.495968 | 3_3:+82165932 | Msa0477790:three_prime_UTR |
| CGACTCCGCAGTGCCGCCGC+CGG | 0.500131 | 3_3:-82165755 | None:intergenic |
| CTGTGGGATTTGAGAAATGA+AGG | 0.500275 | 3_3:-82161553 | None:intergenic |
| ATTAATATATGCAGAGGTAT+GGG | 0.510376 | 3_3:+82164279 | Msa0477790:intron |
| TATAACTGGTTTGTCGCCAA+TGG | 0.512518 | 3_3:-82162144 | None:intergenic |
| CAACGTGAGTCCTGTGGACA+TGG | 0.513439 | 3_3:+82165657 | Msa0477790:CDS |
| AGGGCTCTCTCTGATTTGGC+CGG | 0.515762 | 3_3:+82165736 | Msa0477790:CDS |
| GACCCTCTTCTTCAAAATCC+AGG | 0.523176 | 3_3:+82161795 | Msa0477790:CDS |
| CCCCTTGGCTTGGTCTGGCT+AGG | 0.523363 | 3_3:-82161487 | None:intergenic |
| CTCTTATATGCTTACAACAA+AGG | 0.525173 | 3_3:+82165695 | Msa0477790:CDS |
| GTAGAAAGAGGAACAAGTGC+AGG | 0.528295 | 3_3:+82165586 | Msa0477790:CDS |
| GCCTAGCCAGACCAAGCCAA+GGG | 0.528804 | 3_3:+82161486 | Msa0477790:five_prime_UTR |
| TTTATAGAGAATAGAATGAA+GGG | 0.530161 | 3_3:-82161514 | None:intergenic |
| GGCTGATACCTTCTCACCAC+TGG | 0.530809 | 3_3:+82165783 | Msa0477790:CDS |
| ATAATAATGGCAGCTACTCA+TGG | 0.532384 | 3_3:+82161612 | Msa0477790:exon |
| GCTTGGTCTGGCTAGGCCGT+AGG | 0.534557 | 3_3:-82161480 | None:intergenic |
| ACATCTCCAATATGCAAGGA+AGG | 0.542635 | 3_3:-82162385 | None:intergenic |
| TTGTCACTAGCAGTATAGCC+TGG | 0.553691 | 3_3:-82161813 | None:intergenic |
| ACCAGTTATACTGGTCATGA+CGG | 0.556550 | 3_3:+82162157 | Msa0477790:CDS |
| CGGCACTGCGGAGTCGAACG+AGG | 0.558440 | 3_3:+82165762 | Msa0477790:CDS |
| GGCCTAGCCAGACCAAGCCA+AGG | 0.560772 | 3_3:+82161485 | Msa0477790:five_prime_UTR |
| ACGGTAGTACTTGGAATCAA+CGG | 0.561307 | 3_3:-82164510 | None:intergenic |
| TGTCATCACACCACTCTAAG+TGG | 0.562990 | 3_3:+82165851 | Msa0477790:CDS |
| AAGGTTGTGCTTGTAGAAAG+AGG | 0.565517 | 3_3:+82165574 | Msa0477790:CDS |
| CCAGTTATACTGGTCATGAC+GGG | 0.572203 | 3_3:+82162158 | Msa0477790:CDS |
| AAAACAATGGTGACTACACA+AGG | 0.576219 | 3_3:+82164330 | Msa0477790:CDS |
| GCCAAATGAGCCCAATAATG+TGG | 0.579248 | 3_3:-82162415 | None:intergenic |
| AGCAACATCTCCAATATGCA+AGG | 0.580043 | 3_3:-82162389 | None:intergenic |
| AAATGAAGGACCTAATGGGT+TGG | 0.582195 | 3_3:-82161539 | None:intergenic |
| TAATAATGGCAGCTACTCAT+GGG | 0.584057 | 3_3:+82161613 | Msa0477790:exon |
| TTGTTCAGGAATACCATCAA+CGG | 0.585225 | 3_3:-82164465 | None:intergenic |
| AGTGGCGGCCAGTGGTGAGA+AGG | 0.585903 | 3_3:-82165791 | None:intergenic |
| CGCCACTAACTCTGTTGCTG+TGG | 0.586135 | 3_3:+82165807 | Msa0477790:CDS |
| TGTCTGGGTGTAGATAATAA+TGG | 0.587493 | 3_3:+82161599 | Msa0477790:exon |
| GTGACTACACAAGGGACGTA+GGG | 0.588370 | 3_3:+82164339 | Msa0477790:CDS |
| GATGCACTTTCCATGTCCAC+AGG | 0.595419 | 3_3:-82165667 | None:intergenic |
| ATTGCTAAAATCAACAAAGA+GGG | 0.597398 | 3_3:+82161732 | Msa0477790:CDS |
| AATTGCTAAAATCAACAAAG+AGG | 0.605144 | 3_3:+82161731 | Msa0477790:CDS |
| AGAGCCCTAATAGCAATGAA+AGG | 0.609986 | 3_3:-82165721 | None:intergenic |
| TATAGGAAGACAAGAACTGT+GGG | 0.613254 | 3_3:-82161569 | None:intergenic |
| CATCTCCAATATGCAAGGAA+GGG | 0.635228 | 3_3:-82162384 | None:intergenic |
| ACATAGTTCACCACTTAGAG+TGG | 0.637613 | 3_3:-82165861 | None:intergenic |
| ACAGAGTTAGTGGCGGCCAG+TGG | 0.641871 | 3_3:-82165799 | None:intergenic |
| ATGCTTGACAACGACACCAA+AGG | 0.644624 | 3_3:+82165555 | Msa0477790:CDS |
| GGTGACTACACAAGGGACGT+AGG | 0.645883 | 3_3:+82164338 | Msa0477790:CDS |
| TTGATGGTATTCCTGAACAA+AGG | 0.648077 | 3_3:+82164468 | Msa0477790:CDS |
| CAAATTCAACGTGAGTCCTG+TGG | 0.648305 | 3_3:+82165651 | Msa0477790:CDS |
| TTTGGCCGGCGGCGGCACTG+CGG | 0.654634 | 3_3:+82165750 | Msa0477790:CDS |
| GGACATGGAAAGTGCATCAG+TGG | 0.663275 | 3_3:+82165672 | Msa0477790:CDS |
| TAGAAAGAGGAACAAGTGCA+GGG | 0.668433 | 3_3:+82165587 | Msa0477790:CDS |
| CCTAGCCAGACCAAGCCAAG+GGG | 0.681589 | 3_3:+82161487 | Msa0477790:five_prime_UTR |
| GCTCTCTCTGATTTGGCCGG+CGG | 0.683883 | 3_3:+82165739 | Msa0477790:CDS |
| TATATGCAGAGGTATGGGCA+AGG | 0.693984 | 3_3:+82164284 | Msa0477790:intron |
| ACATTACCACTAGAAAACAA+TGG | 0.697246 | 3_3:+82164317 | Msa0477790:CDS |
| ATATAGGAAGACAAGAACTG+TGG | 0.701422 | 3_3:-82161570 | None:intergenic |
| CACAGCAACAGAGTTAGTGG+CGG | 0.702748 | 3_3:-82165806 | None:intergenic |
| GGTCATGACGGGATTGAGTG+TGG | 0.703759 | 3_3:+82162169 | Msa0477790:CDS |
| CTAGCCAGACCAAGCCAAGG+GGG | 0.709982 | 3_3:+82161488 | Msa0477790:five_prime_UTR |
| AAACAATGGTGACTACACAA+GGG | 0.726560 | 3_3:+82164331 | Msa0477790:CDS |
| GGTAGTACTTGGAATCAACG+GGG | 0.827912 | 3_3:-82164508 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCATATGTATAATTTAAAT+GGG | - | chr3_3:82161878-82161897 | None:intergenic | 10.0% |
| !! | TTTCATATGTATAATTTAAA+TGG | - | chr3_3:82161879-82161898 | None:intergenic | 10.0% |
| !!! | ATATTGTTATGTTTTTTTAA+AGG | + | chr3_3:82162857-82162876 | Msa0477790:intron | 10.0% |
| !!! | TGTAAAAAAGTATAAATTAT+AGG | - | chr3_3:82163211-82163230 | None:intergenic | 10.0% |
| !! | GTTAAAAAAAAAAAATTCTT+TGG | - | chr3_3:82163432-82163451 | None:intergenic | 10.0% |
| !! | TGTAAAAAAAAATTATTTAC+AGG | - | chr3_3:82163649-82163668 | None:intergenic | 10.0% |
| !! | TATATATATGATTTCAATTA+TGG | - | chr3_3:82163805-82163824 | None:intergenic | 10.0% |
| !!! | CATATTTATATTTTTTTAAG+GGG | - | chr3_3:82163916-82163935 | None:intergenic | 10.0% |
| !!! | GTCATATTTATATTTTTTTA+AGG | - | chr3_3:82163918-82163937 | None:intergenic | 10.0% |
| !! | TATCATGATTAATATATATA+TGG | + | chr3_3:82164101-82164120 | Msa0477790:intron | 10.0% |
| !!! | AAATACTTTTTTATCATTTT+TGG | + | chr3_3:82164162-82164181 | Msa0477790:intron | 10.0% |
| !!! | ACTAATATTGATTTTTATTA+TGG | - | chr3_3:82164786-82164805 | None:intergenic | 10.0% |
| !!! | TTTTTTTAATGAAAATTTGA+AGG | - | chr3_3:82164887-82164906 | None:intergenic | 10.0% |
| !!! | TAAAGACAAATTTTATATAT+AGG | - | chr3_3:82165403-82165422 | None:intergenic | 10.0% |
| !! | TATATAAAATTTGTCTTTAT+TGG | + | chr3_3:82165404-82165423 | Msa0477790:intron | 10.0% |
| !! | AAAACAAAAATAAAATAACA+TGG | + | chr3_3:82165468-82165487 | Msa0477790:intron | 10.0% |
| !!! | CTTAATTTTCCTATTTTTTA+TGG | + | chr3_3:82162088-82162107 | Msa0477790:intron | 15.0% |
| !! | GAAATAATGAATATATACTA+TGG | + | chr3_3:82162512-82162531 | Msa0477790:intron | 15.0% |
| !! | AAAAAGAAAGAAACAATATT+AGG | - | chr3_3:82162792-82162811 | None:intergenic | 15.0% |
| !!! | TGTTTTAATAAAGTTACTTT+TGG | - | chr3_3:82162909-82162928 | None:intergenic | 15.0% |
| !! | AAAAAAAAAACTAGATATTC+TGG | + | chr3_3:82163009-82163028 | Msa0477790:intron | 15.0% |
| !! | ATTTATAGTTACATGTATAT+TGG | + | chr3_3:82163240-82163259 | Msa0477790:intron | 15.0% |
| !! | TTTATAGTTACATGTATATT+GGG | + | chr3_3:82163241-82163260 | Msa0477790:intron | 15.0% |
| !!! | TATGTAATTTTAGAATTTTG+CGG | + | chr3_3:82163264-82163283 | Msa0477790:intron | 15.0% |
| !! | TATTGAAATAAAAATACTGA+AGG | + | chr3_3:82163387-82163406 | Msa0477790:intron | 15.0% |
| !!! | TGAATAAAGTAAATATGTTT+TGG | - | chr3_3:82163600-82163619 | None:intergenic | 15.0% |
| !!! | TTTTATAATTAGTAACAAAC+AGG | - | chr3_3:82163701-82163720 | None:intergenic | 15.0% |
| !! | AGTTAATTAATTAACTATGA+TGG | + | chr3_3:82164135-82164154 | Msa0477790:intron | 15.0% |
| !! | AATAATATTAATATATGCAG+AGG | + | chr3_3:82164273-82164292 | Msa0477790:intron | 15.0% |
| !!! | TCTTTGAATTTTTACATATA+TGG | - | chr3_3:82164579-82164598 | None:intergenic | 15.0% |
| !!! | AATATTTTTGTTCCAAATTT+TGG | + | chr3_3:82164655-82164674 | Msa0477790:intron | 15.0% |
| !! | TATATTGCATGTTATATATA+GGG | - | chr3_3:82165185-82165204 | None:intergenic | 15.0% |
| !! | CATAAAATAATACAACATAT+TGG | + | chr3_3:82165251-82165270 | Msa0477790:intron | 15.0% |
| !! | AAGAGATAAAAAAAAAATGT+TGG | - | chr3_3:82165448-82165467 | None:intergenic | 15.0% |
| !!! | CAATGATCTTTTTTTTTTTT+GGG | + | chr3_3:82165987-82166006 | Msa0477790:three_prime_UTR | 15.0% |
| !! | ACAGAAAAATTATACATTGT+TGG | + | chr3_3:82161436-82161455 | Msa0477790:five_prime_UTR | 20.0% |
| !!! | TTTTAAAATACTAACTCCTA+CGG | + | chr3_3:82161464-82161483 | Msa0477790:five_prime_UTR | 20.0% |
| !! | TTTATAGAGAATAGAATGAA+GGG | - | chr3_3:82161517-82161536 | None:intergenic | 20.0% |
| !!! | TTTTATAGAGAATAGAATGA+AGG | - | chr3_3:82161518-82161537 | None:intergenic | 20.0% |
| !! | ATCATGAAATTAAATTTGCA+AGG | + | chr3_3:82161997-82162016 | Msa0477790:intron | 20.0% |
| !!! | TTAAGTTTTTTCAAAGTAGA+TGG | + | chr3_3:82162328-82162347 | Msa0477790:CDS | 20.0% |
| !! | TGCATTATAAAGTGATAAAA+TGG | - | chr3_3:82162640-82162659 | None:intergenic | 20.0% |
| !! | TTATAATGCAAAATAATACG+TGG | + | chr3_3:82162650-82162669 | Msa0477790:intron | 20.0% |
| !!! | AACAATATTAGGATTTTTGA+AGG | - | chr3_3:82162781-82162800 | None:intergenic | 20.0% |
| !!! | TGTTTCTTTCTTTTTTTTGA+AGG | + | chr3_3:82162797-82162816 | Msa0477790:intron | 20.0% |
| !!! | CATATCATTTTATATTGAGT+TGG | - | chr3_3:82162949-82162968 | None:intergenic | 20.0% |
| !! | CAACTCAATATAAAATGATA+TGG | + | chr3_3:82162947-82162966 | Msa0477790:intron | 20.0% |
| !!! | AATATGCAATTTCTTTTTCT+TGG | - | chr3_3:82163454-82163473 | None:intergenic | 20.0% |
| !!! | TAAAGAGATATTTTATGTCT+AGG | - | chr3_3:82163488-82163507 | None:intergenic | 20.0% |
| !! | ATTAACGAGTTGTATATTAA+CGG | + | chr3_3:82164224-82164243 | Msa0477790:intron | 20.0% |
| !!! | AATTTTTACATATATGGTAC+TGG | - | chr3_3:82164573-82164592 | None:intergenic | 20.0% |
| !!! | TTGATCAATTTTTACGTATA+AGG | - | chr3_3:82164627-82164646 | None:intergenic | 20.0% |
| !! | GATATATTTAGTCCAAAATT+TGG | - | chr3_3:82164670-82164689 | None:intergenic | 20.0% |
| !!! | TTGAAGTAAAATTTTATCGA+AGG | - | chr3_3:82164698-82164717 | None:intergenic | 20.0% |
| !!! | ATTTTACTTCAATTTGAGAT+CGG | + | chr3_3:82164706-82164725 | Msa0477790:intron | 20.0% |
| !! | ATATTGCATGTTATATATAG+GGG | - | chr3_3:82165184-82165203 | None:intergenic | 20.0% |
| !! | GTATATTGCATGTTATATAT+AGG | - | chr3_3:82165186-82165205 | None:intergenic | 20.0% |
| !!! | TTTTTCGAAAATATATTTGC+AGG | + | chr3_3:82165498-82165517 | Msa0477790:intron | 20.0% |
| !!! | GCAATGATCTTTTTTTTTTT+TGG | + | chr3_3:82165986-82166005 | Msa0477790:three_prime_UTR | 20.0% |
| ! | TTGGGTATTAAACAACATAA+AGG | - | chr3_3:82161667-82161686 | None:intergenic | 25.0% |
| ! | AATTGCTAAAATCAACAAAG+AGG | + | chr3_3:82161731-82161750 | Msa0477790:CDS | 25.0% |
| ! | ATTGCTAAAATCAACAAAGA+GGG | + | chr3_3:82161732-82161751 | Msa0477790:CDS | 25.0% |
| ! | TATGTATAATTTAAATGGGC+CGG | - | chr3_3:82161874-82161893 | None:intergenic | 25.0% |
| !! | AGCTCTAGTTAAAATAAACT+TGG | - | chr3_3:82161905-82161924 | None:intergenic | 25.0% |
| ! | GTGAAGGTTTATAAATTAGT+TGG | - | chr3_3:82161949-82161968 | None:intergenic | 25.0% |
| !! | TCATGATTATTTTCTGTTGA+TGG | - | chr3_3:82161984-82162003 | None:intergenic | 25.0% |
| !!! | ATATATGGTTTTGTACTTGA+AGG | + | chr3_3:82162197-82162216 | Msa0477790:intron | 25.0% |
| !! | CTACTTTGAAAAAACTTAAC+AGG | - | chr3_3:82162327-82162346 | None:intergenic | 25.0% |
| ! | TTGAGTATATATTGTATGCT+AGG | - | chr3_3:82162478-82162497 | None:intergenic | 25.0% |
| ! | ATATTAATGTGCTCGTATAT+TGG | + | chr3_3:82162613-82162632 | Msa0477790:intron | 25.0% |
| !!! | AAGTTACTTTTGGTTTATTG+TGG | - | chr3_3:82162899-82162918 | None:intergenic | 25.0% |
| ! | ACTTTATTAAAACAGAAGTC+AGG | + | chr3_3:82162915-82162934 | Msa0477790:intron | 25.0% |
| ! | TCAATCTCAATGTTTGATTA+CGG | + | chr3_3:82163056-82163075 | Msa0477790:intron | 25.0% |
| !! | CTTTGTTCTTGCTTTAAATT+GGG | - | chr3_3:82163085-82163104 | None:intergenic | 25.0% |
| ! | ATGAATCAACACATCAAAAT+TGG | + | chr3_3:82163111-82163130 | Msa0477790:intron | 25.0% |
| ! | AATATCTCTTTAGCTAACAA+CGG | + | chr3_3:82163496-82163515 | Msa0477790:intron | 25.0% |
| ! | GGTAATTTGACTAAGTTATT+AGG | - | chr3_3:82163628-82163647 | None:intergenic | 25.0% |
| ! | GTAGTTGAAAACAACATTAA+AGG | + | chr3_3:82163675-82163694 | Msa0477790:intron | 25.0% |
| ! | TGGTAAATAGACACAAAATA+AGG | - | chr3_3:82163785-82163804 | None:intergenic | 25.0% |
| !!! | AGATCACTAACTTCATTTTT+AGG | - | chr3_3:82163961-82163980 | None:intergenic | 25.0% |
| ! | TATTAATATATGCAGAGGTA+TGG | + | chr3_3:82164278-82164297 | Msa0477790:intron | 25.0% |
| !! | ATTAATATATGCAGAGGTAT+GGG | + | chr3_3:82164279-82164298 | Msa0477790:intron | 25.0% |
| ! | AATGAGTAATCTCGAAAATT+TGG | - | chr3_3:82165000-82165019 | None:intergenic | 25.0% |
| ! | AAAAAAAACTCTCATTCTCA+AGG | - | chr3_3:82165029-82165048 | None:intergenic | 25.0% |
| ! | ACATAGAATGAAAGAGTTAT+TGG | + | chr3_3:82165226-82165245 | Msa0477790:intron | 25.0% |
| ! | AGTAAAAATATTTCGTTGAG+TGG | - | chr3_3:82165280-82165299 | None:intergenic | 25.0% |
| ! | AATAGCCAATGAAAAAACTT+CGG | - | chr3_3:82166053-82166072 | None:intergenic | 25.0% |
| !! | TGGCTGTTAAATTAACTTTT+GGG | - | chr3_3:82166250-82166269 | None:intergenic | 25.0% |
| TCTATAAAAACCAACCCATT+AGG | + | chr3_3:82161529-82161548 | Msa0477790:five_prime_UTR | 30.0% | |
| GGTATGATTAAACCCAAATA+AGG | - | chr3_3:82161759-82161778 | None:intergenic | 30.0% | |
| CGTTATCAGCCATAAAAAAT+AGG | - | chr3_3:82162100-82162119 | None:intergenic | 30.0% | |
| !!! | TTTTTTATGGCTGATAACGA+AGG | + | chr3_3:82162101-82162120 | Msa0477790:intron | 30.0% |
| ! | ATGTTGCTATTCCACATTAT+TGG | + | chr3_3:82162404-82162423 | Msa0477790:CDS | 30.0% |
| ! | TGTTGCTATTCCACATTATT+GGG | + | chr3_3:82162405-82162424 | Msa0477790:CDS | 30.0% |
| TGTATGCTAGGAATTATTGT+GGG | - | chr3_3:82162466-82162485 | None:intergenic | 30.0% | |
| TTGTATGCTAGGAATTATTG+TGG | - | chr3_3:82162467-82162486 | None:intergenic | 30.0% | |
| !! | GTTAAACTTTTATTTGTCGC+TGG | - | chr3_3:82162744-82162763 | None:intergenic | 30.0% |
| GGTTTATTGTGGAAAAATAG+TGG | - | chr3_3:82162888-82162907 | None:intergenic | 30.0% | |
| GATTGAACTCTTGAATTGAT+CGG | - | chr3_3:82163042-82163061 | None:intergenic | 30.0% | |
| CAATCTCAATGTTTGATTAC+GGG | + | chr3_3:82163057-82163076 | Msa0477790:intron | 30.0% | |
| ! | GCTTTGTTCTTGCTTTAAAT+TGG | - | chr3_3:82163086-82163105 | None:intergenic | 30.0% |
| TCAACACATCAAAATTGGTA+AGG | + | chr3_3:82163116-82163135 | Msa0477790:intron | 30.0% | |
| CAACACATCAAAATTGGTAA+GGG | + | chr3_3:82163117-82163136 | Msa0477790:intron | 30.0% | |
| CTAATTCTGTTTCCTTCTTA+TGG | - | chr3_3:82163994-82164013 | None:intergenic | 30.0% | |
| AGAATTTAACCTCAAATGTG+TGG | + | chr3_3:82164022-82164041 | Msa0477790:intron | 30.0% | |
| ACATTACCACTAGAAAACAA+TGG | + | chr3_3:82164317-82164336 | Msa0477790:CDS | 30.0% | |
| !! | TTTACATATATGGTACTGGT+TGG | - | chr3_3:82164569-82164588 | None:intergenic | 30.0% |
| AATCTCGAAAATTTGGTTGA+CGG | - | chr3_3:82164993-82165012 | None:intergenic | 30.0% | |
| ! | ACATTTTAAATGTGGAGAAG+TGG | + | chr3_3:82165136-82165155 | Msa0477790:intron | 30.0% |
| ! | CATTTTAAATGTGGAGAAGT+GGG | + | chr3_3:82165137-82165156 | Msa0477790:intron | 30.0% |
| ! | ATTTTAAATGTGGAGAAGTG+GGG | + | chr3_3:82165138-82165157 | Msa0477790:intron | 30.0% |
| !!! | AGATTGTGTTTTGACGTTTT+TGG | + | chr3_3:82165353-82165372 | Msa0477790:intron | 30.0% |
| !! | GTTGAATTTGTTGTAGATGA+AGG | - | chr3_3:82165641-82165660 | None:intergenic | 30.0% |
| CTCTTATATGCTTACAACAA+AGG | + | chr3_3:82165695-82165714 | Msa0477790:CDS | 30.0% | |
| ! | GATTCCTTTCATTGCTATTA+GGG | + | chr3_3:82165717-82165736 | Msa0477790:CDS | 30.0% |
| TCCGTAATTAGTGCAATTAT+AGG | + | chr3_3:82165901-82165920 | Msa0477790:three_prime_UTR | 30.0% | |
| GCCTATAATTGCACTAATTA+CGG | - | chr3_3:82165905-82165924 | None:intergenic | 30.0% | |
| AAAAAACTTCGGGATAGTTT+CGG | - | chr3_3:82166042-82166061 | None:intergenic | 30.0% | |
| ATAGCCAATGAAAAAACTTC+GGG | - | chr3_3:82166052-82166071 | None:intergenic | 30.0% | |
| ! | GTAAGCTATCGTGAAATTTT+GGG | + | chr3_3:82166146-82166165 | Msa0477790:intron | 30.0% |
| ! | CTGGCTGTTAAATTAACTTT+TGG | - | chr3_3:82166251-82166270 | None:intergenic | 30.0% |
| TGAGAAATGAAGGACCTAAT+GGG | - | chr3_3:82161546-82161565 | None:intergenic | 35.0% | |
| TTGAGAAATGAAGGACCTAA+TGG | - | chr3_3:82161547-82161566 | None:intergenic | 35.0% | |
| TATAGGAAGACAAGAACTGT+GGG | - | chr3_3:82161572-82161591 | None:intergenic | 35.0% | |
| ATATAGGAAGACAAGAACTG+TGG | - | chr3_3:82161573-82161592 | None:intergenic | 35.0% | |
| TGTCTGGGTGTAGATAATAA+TGG | + | chr3_3:82161599-82161618 | Msa0477790:exon | 35.0% | |
| ATAATAATGGCAGCTACTCA+TGG | + | chr3_3:82161612-82161631 | Msa0477790:exon | 35.0% | |
| TAATAATGGCAGCTACTCAT+GGG | + | chr3_3:82161613-82161632 | Msa0477790:exon | 35.0% | |
| ! | ACAACTCACGAATGCATTTT+GGG | - | chr3_3:82161685-82161704 | None:intergenic | 35.0% |
| ! | AACAAAGAGGGTCCTTATTT+GGG | + | chr3_3:82161744-82161763 | Msa0477790:CDS | 35.0% |
| GGGTCAAGTTCAAAAGAATT+TGG | - | chr3_3:82161780-82161799 | None:intergenic | 35.0% | |
| ! | GACAACATCATAGATTTTGC+AGG | + | chr3_3:82161831-82161850 | Msa0477790:CDS | 35.0% |
| !! | AGATTTCGTTTTGGATCCAT+TGG | + | chr3_3:82162128-82162147 | Msa0477790:CDS | 35.0% |
| TTGAGTGTGGTACGTATATA+TGG | + | chr3_3:82162182-82162201 | Msa0477790:intron | 35.0% | |
| GTAGATGGAGTTGTTCATTA+CGG | + | chr3_3:82162343-82162362 | Msa0477790:CDS | 35.0% | |
| TAGATGGAGTTGTTCATTAC+GGG | + | chr3_3:82162344-82162363 | Msa0477790:CDS | 35.0% | |
| CTGGTGTCTATAATGACTAT+GGG | - | chr3_3:82162725-82162744 | None:intergenic | 35.0% | |
| ATTGAGAGAAACACACTTCA+AGG | + | chr3_3:82163158-82163177 | Msa0477790:intron | 35.0% | |
| !! | ACACACTTCAAGGTTCTAAA+TGG | + | chr3_3:82163168-82163187 | Msa0477790:intron | 35.0% |
| !! | CACACTTCAAGGTTCTAAAT+GGG | + | chr3_3:82163169-82163188 | Msa0477790:intron | 35.0% |
| ACGAGTTGTATATTAACGGT+AGG | + | chr3_3:82164228-82164247 | Msa0477790:intron | 35.0% | |
| ! | TAGTCACCATTGTTTTCTAG+TGG | - | chr3_3:82164326-82164345 | None:intergenic | 35.0% |
| AAAACAATGGTGACTACACA+AGG | + | chr3_3:82164330-82164349 | Msa0477790:CDS | 35.0% | |
| AAACAATGGTGACTACACAA+GGG | + | chr3_3:82164331-82164350 | Msa0477790:CDS | 35.0% | |
| ACAATCATCTCAACAACCTT+TGG | + | chr3_3:82164420-82164439 | Msa0477790:CDS | 35.0% | |
| TTGTTCAGGAATACCATCAA+CGG | - | chr3_3:82164468-82164487 | None:intergenic | 35.0% | |
| ! | TTGATGGTATTCCTGAACAA+AGG | + | chr3_3:82164468-82164487 | Msa0477790:CDS | 35.0% |
| ATCTCGAAAATTTGGTTGAC+GGG | - | chr3_3:82164992-82165011 | None:intergenic | 35.0% | |
| ! | GACCTCACACATTTTAAATG+TGG | + | chr3_3:82165128-82165147 | Msa0477790:intron | 35.0% |
| ! | CTCCACATTTAAAATGTGTG+AGG | - | chr3_3:82165133-82165152 | None:intergenic | 35.0% |
| GCATGTTATATATAGGGGTT+GGG | - | chr3_3:82165179-82165198 | None:intergenic | 35.0% | |
| TGCATGTTATATATAGGGGT+TGG | - | chr3_3:82165180-82165199 | None:intergenic | 35.0% | |
| CTCTTTCATTCTATGTCTGT+GGG | - | chr3_3:82165222-82165241 | None:intergenic | 35.0% | |
| ACTCTTTCATTCTATGTCTG+TGG | - | chr3_3:82165223-82165242 | None:intergenic | 35.0% | |
| ! | GGATTCCTTTCATTGCTATT+AGG | + | chr3_3:82165716-82165735 | Msa0477790:CDS | 35.0% |
| AAAAACTTCGGGATAGTTTC+GGG | - | chr3_3:82166041-82166060 | None:intergenic | 35.0% | |
| !!! | CTATCCCGAAGTTTTTTCAT+TGG | + | chr3_3:82166045-82166064 | Msa0477790:intron | 35.0% |
| TTGCTACTGTAGCAAAAAGA+GGG | - | chr3_3:82166123-82166142 | None:intergenic | 35.0% | |
| ! | CGTAAGCTATCGTGAAATTT+TGG | + | chr3_3:82166145-82166164 | Msa0477790:intron | 35.0% |
| ! | AAATGAAGGACCTAATGGGT+TGG | - | chr3_3:82161542-82161561 | None:intergenic | 40.0% |
| CTGTGGGATTTGAGAAATGA+AGG | - | chr3_3:82161556-82161575 | None:intergenic | 40.0% | |
| TTCCTATATTGCGTGTGTCT+GGG | + | chr3_3:82161584-82161603 | Msa0477790:five_prime_UTR | 40.0% | |
| ! | CACAACTCACGAATGCATTT+TGG | - | chr3_3:82161686-82161705 | None:intergenic | 40.0% |
| CAACAAAGAGGGTCCTTATT+TGG | + | chr3_3:82161743-82161762 | Msa0477790:CDS | 40.0% | |
| !! | AGCCTGGATTTTGAAGAAGA+GGG | - | chr3_3:82161800-82161819 | None:intergenic | 40.0% |
| !! | TAGCCTGGATTTTGAAGAAG+AGG | - | chr3_3:82161801-82161820 | None:intergenic | 40.0% |
| !! | CTGTTGATGGTGTTAGAAGT+CGG | - | chr3_3:82161971-82161990 | None:intergenic | 40.0% |
| ! | TTATGGCTGATAACGAAGGA+AGG | + | chr3_3:82162105-82162124 | Msa0477790:intron | 40.0% |
| ! | GAAGGAAGGAGATTTCGTTT+TGG | + | chr3_3:82162119-82162138 | Msa0477790:intron | 40.0% |
| !! | TATAACTGGTTTGTCGCCAA+TGG | - | chr3_3:82162147-82162166 | None:intergenic | 40.0% |
| ACCAGTTATACTGGTCATGA+CGG | + | chr3_3:82162157-82162176 | Msa0477790:CDS | 40.0% | |
| CATCTCCAATATGCAAGGAA+GGG | - | chr3_3:82162387-82162406 | None:intergenic | 40.0% | |
| ACATCTCCAATATGCAAGGA+AGG | - | chr3_3:82162388-82162407 | None:intergenic | 40.0% | |
| AGCAACATCTCCAATATGCA+AGG | - | chr3_3:82162392-82162411 | None:intergenic | 40.0% | |
| TCCACATTATTGGGCTCATT+TGG | + | chr3_3:82162414-82162433 | Msa0477790:CDS | 40.0% | |
| ! | TGAGCTTAACTCAGTTGGTA+AGG | - | chr3_3:82162561-82162580 | None:intergenic | 40.0% |
| TACCAACTGAGTTAAGCTCA+CGG | + | chr3_3:82162561-82162580 | Msa0477790:intron | 40.0% | |
| GCTGGTGTCTATAATGACTA+TGG | - | chr3_3:82162726-82162745 | None:intergenic | 40.0% | |
| CTTTCGTCGTTTCCATAAGA+AGG | + | chr3_3:82163979-82163998 | Msa0477790:intron | 40.0% | |
| CGTCTCATAACTTACCTCTA+AGG | + | chr3_3:82164051-82164070 | Msa0477790:intron | 40.0% | |
| TCAACGGGAAAAATCTCTTC+TGG | - | chr3_3:82164452-82164471 | None:intergenic | 40.0% | |
| ! | GAAGAGATTTTTCCCGTTGA+TGG | + | chr3_3:82164452-82164471 | Msa0477790:CDS | 40.0% |
| TGTTCAGGAATACCATCAAC+GGG | - | chr3_3:82164467-82164486 | None:intergenic | 40.0% | |
| AACAAAGGCAACATGCTCTT+TGG | + | chr3_3:82164483-82164502 | Msa0477790:CDS | 40.0% | |
| ACAAAGGCAACATGCTCTTT+GGG | + | chr3_3:82164484-82164503 | Msa0477790:CDS | 40.0% | |
| ACGGTAGTACTTGGAATCAA+CGG | - | chr3_3:82164513-82164532 | None:intergenic | 40.0% | |
| TTTGGCAATACGGTAGTACT+TGG | - | chr3_3:82164522-82164541 | None:intergenic | 40.0% | |
| !!! | CCTCGAGTTTTTTGGCAATA+CGG | - | chr3_3:82164532-82164551 | None:intergenic | 40.0% |
| TTGCCAAAAAACTCGAGGTA+TGG | + | chr3_3:82164534-82164553 | Msa0477790:intron | 40.0% | |
| !!! | AGACCATACCTCGAGTTTTT+TGG | - | chr3_3:82164540-82164559 | None:intergenic | 40.0% |
| AAAAACTCGAGGTATGGTCT+AGG | + | chr3_3:82164540-82164559 | Msa0477790:intron | 40.0% | |
| CTTTCTACAAGCACAACCTT+TGG | - | chr3_3:82165574-82165593 | None:intergenic | 40.0% | |
| AAGGTTGTGCTTGTAGAAAG+AGG | + | chr3_3:82165574-82165593 | Msa0477790:CDS | 40.0% | |
| TAGAAAGAGGAACAAGTGCA+GGG | + | chr3_3:82165587-82165606 | Msa0477790:CDS | 40.0% | |
| AGAGCCCTAATAGCAATGAA+AGG | - | chr3_3:82165724-82165743 | None:intergenic | 40.0% | |
| TATTAGGGCTCTCTCTGATT+TGG | + | chr3_3:82165732-82165751 | Msa0477790:CDS | 40.0% | |
| ACATAGTTCACCACTTAGAG+TGG | - | chr3_3:82165864-82165883 | None:intergenic | 40.0% | |
| CGTAGACAACAACTTTGTTC+TGG | + | chr3_3:82165928-82165947 | Msa0477790:three_prime_UTR | 40.0% | |
| GACAACAACTTTGTTCTGGT+TGG | + | chr3_3:82165932-82165951 | Msa0477790:three_prime_UTR | 40.0% | |
| ! | CTTTGTTCTGGTTGGTTGTT+CGG | + | chr3_3:82165940-82165959 | Msa0477790:three_prime_UTR | 40.0% |
| TGCCTGTATTCCACTAAATC+CGG | + | chr3_3:82166086-82166105 | Msa0477790:intron | 40.0% | |
| GTTGCTACTGTAGCAAAAAG+AGG | - | chr3_3:82166124-82166143 | None:intergenic | 40.0% | |
| CTTCCTATATTGCGTGTGTC+TGG | + | chr3_3:82161583-82161602 | Msa0477790:five_prime_UTR | 45.0% | |
| GACCCTCTTCTTCAAAATCC+AGG | + | chr3_3:82161795-82161814 | Msa0477790:CDS | 45.0% | |
| TTGTCACTAGCAGTATAGCC+TGG | - | chr3_3:82161816-82161835 | None:intergenic | 45.0% | |
| GGTAAGTGCATGCTCTATTC+CGG | + | chr3_3:82161852-82161871 | Msa0477790:intron | 45.0% | |
| ! | ATGGTGTTAGAAGTCGGTGA+AGG | - | chr3_3:82161965-82161984 | None:intergenic | 45.0% |
| TGGCGACAAACCAGTTATAC+TGG | + | chr3_3:82162148-82162167 | Msa0477790:CDS | 45.0% | |
| CCAGTTATACTGGTCATGAC+GGG | + | chr3_3:82162158-82162177 | Msa0477790:CDS | 45.0% | |
| GTTGTTCATTACGGGATTGC+TGG | + | chr3_3:82162352-82162371 | Msa0477790:CDS | 45.0% | |
| GCAAACCCTTCCTTGCATAT+TGG | + | chr3_3:82162379-82162398 | Msa0477790:CDS | 45.0% | |
| GCCAAATGAGCCCAATAATG+TGG | - | chr3_3:82162418-82162437 | None:intergenic | 45.0% | |
| ATTGGGCTCATTTGGCACTT+TGG | + | chr3_3:82162422-82162441 | Msa0477790:CDS | 45.0% | |
| ACCAACTGAGTTAAGCTCAC+GGG | + | chr3_3:82162562-82162581 | Msa0477790:intron | 45.0% | |
| ACGACATGACCACACATTTG+AGG | - | chr3_3:82164034-82164053 | None:intergenic | 45.0% | |
| ! | TATATGCAGAGGTATGGGCA+AGG | + | chr3_3:82164284-82164303 | Msa0477790:intron | 45.0% |
| GTCAGCAGCACTTATGTTTG+AGG | - | chr3_3:82164387-82164406 | None:intergenic | 45.0% | |
| ! | TCTCTTCTGGTTGGTACCAA+AGG | - | chr3_3:82164439-82164458 | None:intergenic | 45.0% |
| CGGGAAAAATCTCTTCTGGT+TGG | - | chr3_3:82164448-82164467 | None:intergenic | 45.0% | |
| AGAGCATGTTGCCTTTGTTC+AGG | - | chr3_3:82164482-82164501 | None:intergenic | 45.0% | |
| GGTAGTACTTGGAATCAACG+GGG | - | chr3_3:82164511-82164530 | None:intergenic | 45.0% | |
| CGGTAGTACTTGGAATCAAC+GGG | - | chr3_3:82164512-82164531 | None:intergenic | 45.0% | |
| CCGTATTGCCAAAAAACTCG+AGG | + | chr3_3:82164529-82164548 | Msa0477790:CDS | 45.0% | |
| ATGCTTGACAACGACACCAA+AGG | + | chr3_3:82165555-82165574 | Msa0477790:CDS | 45.0% | |
| GTAGAAAGAGGAACAAGTGC+AGG | + | chr3_3:82165586-82165605 | Msa0477790:CDS | 45.0% | |
| CAAATTCAACGTGAGTCCTG+TGG | + | chr3_3:82165651-82165670 | Msa0477790:CDS | 45.0% | |
| TGTCATCACACCACTCTAAG+TGG | + | chr3_3:82165851-82165870 | Msa0477790:CDS | 45.0% | |
| TTAGTGGAATACAGGCAGGT+CGG | - | chr3_3:82166083-82166102 | None:intergenic | 45.0% | |
| GGATTTAGTGGAATACAGGC+AGG | - | chr3_3:82166087-82166106 | None:intergenic | 45.0% | |
| GCCTGTATTCCACTAAATCC+GGG | + | chr3_3:82166087-82166106 | Msa0477790:intron | 45.0% | |
| TCCCGGATTTAGTGGAATAC+AGG | - | chr3_3:82166091-82166110 | None:intergenic | 45.0% | |
| AGTGTAACTCCCGGATTTAG+TGG | - | chr3_3:82166099-82166118 | None:intergenic | 45.0% | |
| !! | TTACATATATAATTAATTAT+TGG | + | chr3_3:82162220-82162239 | Msa0477790:intron | 5.0% |
| !!! | ATCTTTAAAATTATAAATAT+AGG | + | chr3_3:82163337-82163356 | Msa0477790:intron | 5.0% |
| !!! | TCATATTTATATTTTTTTAA+GGG | - | chr3_3:82163917-82163936 | None:intergenic | 5.0% |
| !!! | TATAAAAAAAATCATATTTT+TGG | - | chr3_3:82164812-82164831 | None:intergenic | 5.0% |
| AGAATGAAGGGTAACCCCCT+TGG | - | chr3_3:82161505-82161524 | None:intergenic | 50.0% | |
| CACCCAGACACACGCAATAT+AGG | - | chr3_3:82161589-82161608 | None:intergenic | 50.0% | |
| CCCGTCATGACCAGTATAAC+TGG | - | chr3_3:82162161-82162180 | None:intergenic | 50.0% | |
| !! | CTCATTTGGCACTTTGGAGC+TGG | + | chr3_3:82162428-82162447 | Msa0477790:CDS | 50.0% |
| TCCCGTGAGCTTAACTCAGT+TGG | - | chr3_3:82162566-82162585 | None:intergenic | 50.0% | |
| GTGACTACACAAGGGACGTA+GGG | + | chr3_3:82164339-82164358 | Msa0477790:CDS | 50.0% | |
| AATGTGGAGAAGTGGGGTGT+CGG | + | chr3_3:82165144-82165163 | Msa0477790:intron | 50.0% | |
| GTCTGTGGGCTTAACTCAGT+TGG | - | chr3_3:82165208-82165227 | None:intergenic | 50.0% | |
| GATGCACTTTCCATGTCCAC+AGG | - | chr3_3:82165670-82165689 | None:intergenic | 50.0% | |
| ! | GGACATGGAAAGTGCATCAG+TGG | + | chr3_3:82165672-82165691 | Msa0477790:CDS | 50.0% |
| CACAGCAACAGAGTTAGTGG+CGG | - | chr3_3:82165809-82165828 | None:intergenic | 50.0% | |
| GACCACAGCAACAGAGTTAG+TGG | - | chr3_3:82165812-82165831 | None:intergenic | 50.0% | |
| AAAGAGGGCAGTGTAACTCC+CGG | - | chr3_3:82166108-82166127 | None:intergenic | 50.0% | |
| ! | GGTCATGACGGGATTGAGTG+TGG | + | chr3_3:82162169-82162188 | Msa0477790:CDS | 55.0% |
| !! | TTTGGCACTTTGGAGCTGGC+AGG | + | chr3_3:82162432-82162451 | Msa0477790:CDS | 55.0% |
| TGACGACGTGAGAGCCTTAG+AGG | - | chr3_3:82164068-82164087 | None:intergenic | 55.0% | |
| GCTCTCACGTCGTCATTGCT+AGG | + | chr3_3:82164073-82164092 | Msa0477790:intron | 55.0% | |
| GGTGACTACACAAGGGACGT+AGG | + | chr3_3:82164338-82164357 | Msa0477790:CDS | 55.0% | |
| ! | ATGTGGAGAAGTGGGGTGTC+GGG | + | chr3_3:82165145-82165164 | Msa0477790:intron | 55.0% |
| CAACGTGAGTCCTGTGGACA+TGG | + | chr3_3:82165657-82165676 | Msa0477790:CDS | 55.0% | |
| !! | AGGGCTCTCTCTGATTTGGC+CGG | + | chr3_3:82165736-82165755 | Msa0477790:CDS | 55.0% |
| GGCTGATACCTTCTCACCAC+TGG | + | chr3_3:82165783-82165802 | Msa0477790:CDS | 55.0% | |
| CGCCACTAACTCTGTTGCTG+TGG | + | chr3_3:82165807-82165826 | Msa0477790:CDS | 55.0% | |
| GCCTAGCCAGACCAAGCCAA+GGG | + | chr3_3:82161486-82161505 | Msa0477790:five_prime_UTR | 60.0% | |
| CCTAGCCAGACCAAGCCAAG+GGG | + | chr3_3:82161487-82161506 | Msa0477790:five_prime_UTR | 60.0% | |
| CTAGCCAGACCAAGCCAAGG+GGG | + | chr3_3:82161488-82161507 | Msa0477790:five_prime_UTR | 60.0% | |
| !! | GTAACCCCCTTGGCTTGGTC+TGG | - | chr3_3:82161495-82161514 | None:intergenic | 60.0% |
| GAAGGGTAACCCCCTTGGCT+TGG | - | chr3_3:82161500-82161519 | None:intergenic | 60.0% | |
| !! | TGTGGAGAAGTGGGGTGTCG+GGG | + | chr3_3:82165146-82165165 | Msa0477790:intron | 60.0% |
| !! | GCTCTCTCTGATTTGGCCGG+CGG | + | chr3_3:82165739-82165758 | Msa0477790:CDS | 60.0% |
| ACAGAGTTAGTGGCGGCCAG+TGG | - | chr3_3:82165802-82165821 | None:intergenic | 60.0% | |
| GTGGAATACAGGCAGGTCGG+TGG | - | chr3_3:82166080-82166099 | None:intergenic | 60.0% | |
| GCTTGGTCTGGCTAGGCCGT+AGG | - | chr3_3:82161483-82161502 | None:intergenic | 65.0% | |
| GGCCTAGCCAGACCAAGCCA+AGG | + | chr3_3:82161485-82161504 | Msa0477790:five_prime_UTR | 65.0% | |
| !! | CCCCTTGGCTTGGTCTGGCT+AGG | - | chr3_3:82161490-82161509 | None:intergenic | 65.0% |
| !! | CTCTCTGATTTGGCCGGCGG+CGG | + | chr3_3:82165742-82165761 | Msa0477790:CDS | 65.0% |
| AGTGGCGGCCAGTGGTGAGA+AGG | - | chr3_3:82165794-82165813 | None:intergenic | 65.0% | |
| CGGCACTGCGGAGTCGAACG+AGG | + | chr3_3:82165762-82165781 | Msa0477790:CDS | 70.0% | |
| TTTGGCCGGCGGCGGCACTG+CGG | + | chr3_3:82165750-82165769 | Msa0477790:CDS | 75.0% | |
| ! | CGACTCCGCAGTGCCGCCGC+CGG | - | chr3_3:82165758-82165777 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 82161432 | 82166278 | 82161432 | ID=Msa0477790;Name=Msa0477790 |
| chr3_3 | mRNA | 82161432 | 82166278 | 82161432 | ID=Msa0477790-mRNA-1;Parent=Msa0477790;Name=Msa0477790-mRNA-1;_AED=0.11;_eAED=0.11;_QI=186|1|1|1|0.8|0.66|6|199|357 |
| chr3_3 | exon | 82161432 | 82161852 | 82161432 | ID=Msa0477790-mRNA-1:exon:22814;Parent=Msa0477790-mRNA-1 |
| chr3_3 | exon | 82162123 | 82162190 | 82162123 | ID=Msa0477790-mRNA-1:exon:22815;Parent=Msa0477790-mRNA-1 |
| chr3_3 | exon | 82162298 | 82162453 | 82162298 | ID=Msa0477790-mRNA-1:exon:22816;Parent=Msa0477790-mRNA-1 |
| chr3_3 | exon | 82164293 | 82164550 | 82164293 | ID=Msa0477790-mRNA-1:exon:22817;Parent=Msa0477790-mRNA-1 |
| chr3_3 | exon | 82165520 | 82166006 | 82165520 | ID=Msa0477790-mRNA-1:exon:22818;Parent=Msa0477790-mRNA-1 |
| chr3_3 | exon | 82166210 | 82166278 | 82166210 | ID=Msa0477790-mRNA-1:exon:22819;Parent=Msa0477790-mRNA-1 |
| chr3_3 | five_prime_UTR | 82161432 | 82161617 | 82161432 | ID=Msa0477790-mRNA-1:five_prime_utr;Parent=Msa0477790-mRNA-1 |
| chr3_3 | CDS | 82161618 | 82161852 | 82161618 | ID=Msa0477790-mRNA-1:cds;Parent=Msa0477790-mRNA-1 |
| chr3_3 | CDS | 82162123 | 82162190 | 82162123 | ID=Msa0477790-mRNA-1:cds;Parent=Msa0477790-mRNA-1 |
| chr3_3 | CDS | 82162298 | 82162453 | 82162298 | ID=Msa0477790-mRNA-1:cds;Parent=Msa0477790-mRNA-1 |
| chr3_3 | CDS | 82164293 | 82164550 | 82164293 | ID=Msa0477790-mRNA-1:cds;Parent=Msa0477790-mRNA-1 |
| chr3_3 | CDS | 82165520 | 82165876 | 82165520 | ID=Msa0477790-mRNA-1:cds;Parent=Msa0477790-mRNA-1 |
| chr3_3 | three_prime_UTR | 82165877 | 82166006 | 82165877 | ID=Msa0477790-mRNA-1:three_prime_utr;Parent=Msa0477790-mRNA-1 |
| chr3_3 | three_prime_UTR | 82166210 | 82166278 | 82166210 | ID=Msa0477790-mRNA-1:three_prime_utr;Parent=Msa0477790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
