Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0433880 | XP_013462014.1 | 96.919 | 357 | 11 | 0 | 1 | 357 | 1 | 357 | 0.0 | 720 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0433880 | sp|Q07469|BSPA_POPDE | 29.643 | 280 | 165 | 7 | 70 | 347 | 52 | 301 | 7.98e-35 | 132 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0433880 | A0A072V1Y8 | 96.919 | 357 | 11 | 0 | 1 | 357 | 1 | 357 | 0.0 | 720 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0387090 | Msa0433880 | 0.840474 | 8.507732e-58 | -8.615850e-47 |
| Msa0387110 | Msa0433880 | 0.874576 | 6.064975e-68 | -8.615850e-47 |
| Msa0433880 | Msa0477790 | 0.952427 | 2.480315e-110 | -8.615850e-47 |
| Msa0433880 | Msa1348730 | 0.879462 | 1.222164e-69 | -8.615850e-47 |
| Msa0433880 | Msa1348780 | 0.843998 | 9.925612e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0433880 | MtrunA17_Chr3g0140051 | 96.919 | 357 | 11 | 0 | 1 | 357 | 1 | 357 | 0.0 | 720 |
| Msa0433880 | MtrunA17_Chr3g0140061 | 96.601 | 353 | 12 | 0 | 1 | 353 | 1 | 353 | 0.0 | 709 |
| Msa0433880 | MtrunA17_Chr6g0486081 | 52.698 | 315 | 140 | 4 | 38 | 350 | 29 | 336 | 2.67e-122 | 355 |
| Msa0433880 | MtrunA17_Chr6g0486101 | 50.794 | 315 | 141 | 4 | 38 | 350 | 30 | 332 | 7.67e-117 | 342 |
| Msa0433880 | MtrunA17_Chr6g0486091 | 49.524 | 315 | 145 | 4 | 38 | 350 | 31 | 333 | 6.19e-112 | 329 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0433880 | AT4G28940.1 | 57.321 | 321 | 126 | 3 | 38 | 356 | 33 | 344 | 6.99e-139 | 399 |
| Msa0433880 | AT4G28940.2 | 58.621 | 261 | 99 | 2 | 96 | 356 | 1 | 252 | 3.67e-113 | 330 |
| Msa0433880 | AT4G24340.1 | 37.261 | 314 | 174 | 5 | 39 | 350 | 43 | 335 | 2.82e-66 | 213 |
| Msa0433880 | AT4G24350.1 | 36.306 | 314 | 180 | 6 | 39 | 350 | 38 | 333 | 7.98e-64 | 206 |
| Msa0433880 | AT4G24350.2 | 34.444 | 270 | 159 | 5 | 39 | 306 | 38 | 291 | 1.44e-50 | 171 |
| Msa0433880 | AT4G24350.3 | 36.667 | 240 | 134 | 5 | 111 | 350 | 1 | 222 | 2.18e-48 | 163 |
| Msa0433880 | AT4G24350.4 | 34.634 | 205 | 118 | 4 | 102 | 306 | 9 | 197 | 1.19e-37 | 134 |
Find 106 sgRNAs with CRISPR-Local
Find 250 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACGAAGAGGGTCCTTATT+TGG | 0.132523 | 3_2:-86504676 | Msa0433880:CDS |
| CACAACTCACGAATGCATTT+TGG | 0.147904 | 3_2:+86504736 | None:intergenic |
| GGATTCCTTTCATTGCTATT+AGG | 0.186228 | 3_2:-86500708 | Msa0433880:CDS |
| ATGTTGCTATTCCACATTAT+TGG | 0.227186 | 3_2:-86504034 | Msa0433880:CDS |
| CTGGCTGTTGAATTAACTTT+TGG | 0.231212 | 3_2:+86500379 | None:intergenic |
| CTTCCTATATTGCGTGTGTC+TGG | 0.268657 | 3_2:-86504836 | Msa0433880:five_prime_UTR |
| AACAAAGGCAACATGCTCTT+TGG | 0.272171 | 3_2:-86501938 | Msa0433880:CDS |
| TGTTGCTATTCCACATTATT+GGG | 0.272480 | 3_2:-86504033 | Msa0433880:CDS |
| GGTATGATTAAACCCAAATA+AGG | 0.283272 | 3_2:+86504663 | None:intergenic |
| GATTCCTTTCATTGCTATTA+GGG | 0.293777 | 3_2:-86500707 | Msa0433880:CDS |
| GCAAACCCTTCCTTGCATAT+TGG | 0.314962 | 3_2:-86504059 | Msa0433880:CDS |
| GGGTCAAGTTCAAAAGAATT+TGG | 0.317467 | 3_2:+86504642 | None:intergenic |
| CTTTGTTCTGGTTGGTTGTC+CGG | 0.319062 | 3_2:-86500484 | Msa0433880:three_prime_UTR |
| CTCATTTGGCACTTTGGAGC+TGG | 0.328354 | 3_2:-86504010 | Msa0433880:CDS |
| TCCACATTATTGGGCTCATT+TGG | 0.331452 | 3_2:-86504024 | Msa0433880:CDS |
| TTGGGTATTAAACAACATAA+AGG | 0.346307 | 3_2:+86504755 | None:intergenic |
| AGAGCATGTTGCCTTTGTTC+AGG | 0.348607 | 3_2:+86501942 | None:intergenic |
| AACGAAGAGGGTCCTTATTT+GGG | 0.350130 | 3_2:-86504675 | Msa0433880:CDS |
| GCATATAATTGCACTAATTA+CGG | 0.358763 | 3_2:+86500522 | None:intergenic |
| ATTTATGCTTTATTATATTC+CGG | 0.365888 | 3_2:+86500465 | None:intergenic |
| CGTAGACAACAACTTTGTTC+TGG | 0.366288 | 3_2:-86500496 | Msa0433880:three_prime_UTR |
| TATTAGGGCTCTCTCTGATT+TGG | 0.368111 | 3_2:-86500692 | Msa0433880:CDS |
| GTTGTTCATTACGGGATTGC+TGG | 0.372697 | 3_2:-86504086 | Msa0433880:CDS |
| TAGATGGAGTTGTTCATTAC+GGG | 0.375885 | 3_2:-86504094 | Msa0433880:CDS |
| TTGAGAAATGAAGGACCTAA+TGG | 0.379148 | 3_2:+86504875 | None:intergenic |
| CCCGTCATGACCAGTATAAC+TGG | 0.395242 | 3_2:+86504270 | None:intergenic |
| CTTTCTACAAGCACAACCTT+TGG | 0.403773 | 3_2:+86500853 | None:intergenic |
| CGGTAGTACTTGGAATCAAC+GGG | 0.404829 | 3_2:+86501912 | None:intergenic |
| ATTGGGCTCATTTGGCACTT+TGG | 0.416383 | 3_2:-86504016 | Msa0433880:CDS |
| GTCAGCAGCACTTATGTTTG+AGG | 0.420611 | 3_2:+86502037 | None:intergenic |
| GTAGATGGAGTTGTTCATTA+CGG | 0.424060 | 3_2:-86504095 | Msa0433880:CDS |
| ACAAAGGCAACATGCTCTTT+GGG | 0.425980 | 3_2:-86501937 | Msa0433880:CDS |
| ACAATCATCTCAACAACCTT+TGG | 0.430065 | 3_2:-86502001 | Msa0433880:CDS |
| TTTGGCAATACGGTAGTACT+TGG | 0.430210 | 3_2:+86501902 | None:intergenic |
| GAAGGAAGGAGATTTCGTTT+TGG | 0.431427 | 3_2:-86504309 | Msa0433880:intron |
| GTTGAATTTATTGTAGATGA+AGG | 0.438829 | 3_2:+86500786 | None:intergenic |
| CTCTCTGATTTGGCCGGCGG+CGG | 0.448179 | 3_2:-86500682 | Msa0433880:CDS |
| TTCCTATATTGCGTGTGTCT+GGG | 0.450123 | 3_2:-86504835 | Msa0433880:five_prime_UTR |
| TGAGAAATGAAGGACCTAAT+GGG | 0.450926 | 3_2:+86504876 | None:intergenic |
| CACCCAGACACACGCAATAT+AGG | 0.451282 | 3_2:+86504833 | None:intergenic |
| TATTAATATATGCAGAGGTA+TGG | 0.462558 | 3_2:-86502143 | Msa0433880:intron |
| TGTTCAGGAATACCATCAAC+GGG | 0.480731 | 3_2:+86501957 | None:intergenic |
| TTTGGCACTTTGGAGCTGGC+AGG | 0.483139 | 3_2:-86504006 | Msa0433880:intron |
| TCTCTTCTGGTTGGTACCAA+AGG | 0.484946 | 3_2:+86501985 | None:intergenic |
| TGGCGACAAACCAGTTATAC+TGG | 0.494462 | 3_2:-86504280 | Msa0433880:CDS |
| GACAACAACTTTGTTCTGGT+TGG | 0.495968 | 3_2:-86500492 | Msa0433880:three_prime_UTR |
| CGACTCCGCAGTGCCGCCGC+CGG | 0.500131 | 3_2:+86500669 | None:intergenic |
| CTGTGGGATTTGAGAAATGA+AGG | 0.500275 | 3_2:+86504866 | None:intergenic |
| ATTAATATATGCAGAGGTAT+GGG | 0.510376 | 3_2:-86502142 | Msa0433880:intron |
| TATAACTGGTTTGTCGCCAA+TGG | 0.512518 | 3_2:+86504284 | None:intergenic |
| CAACGTGAGTCCTGTGGACA+TGG | 0.513439 | 3_2:-86500767 | Msa0433880:CDS |
| AGGGCTCTCTCTGATTTGGC+CGG | 0.515762 | 3_2:-86500688 | Msa0433880:CDS |
| GACCCTCTTCTTCAAAATCC+AGG | 0.523176 | 3_2:-86504624 | Msa0433880:CDS |
| CCCCTTGGCTTGGTCTGGCT+AGG | 0.523363 | 3_2:+86504932 | None:intergenic |
| CTCTTATATGCTTACAACAA+AGG | 0.525173 | 3_2:-86500729 | Msa0433880:CDS |
| GTAGAAAGAGGAACAAGTGC+AGG | 0.528295 | 3_2:-86500838 | Msa0433880:CDS |
| GCCTAGCCAGACCAAGCCAA+GGG | 0.528804 | 3_2:-86504933 | Msa0433880:five_prime_UTR |
| TTTATAGAGAATAGAATGAA+GGG | 0.530161 | 3_2:+86504905 | None:intergenic |
| GGCTGATACCTTCTCACCAC+TGG | 0.530809 | 3_2:-86500641 | Msa0433880:CDS |
| ATAATAATGGCAGCTACTCA+TGG | 0.532384 | 3_2:-86504807 | Msa0433880:exon |
| GCTTGGTCTGGCTAGGCCGT+AGG | 0.534557 | 3_2:+86504939 | None:intergenic |
| ACATCTCCAATATGCAAGGA+AGG | 0.542635 | 3_2:+86504053 | None:intergenic |
| ACAGAGTTGGTTGCGGCCAG+TGG | 0.543909 | 3_2:+86500625 | None:intergenic |
| TTGTCACTAGCAGTATAGCC+TGG | 0.553691 | 3_2:+86504606 | None:intergenic |
| ACCAGTTATACTGGTCATGA+CGG | 0.556550 | 3_2:-86504271 | Msa0433880:CDS |
| CGGCACTGCGGAGTCGAACG+AGG | 0.558440 | 3_2:-86500662 | Msa0433880:CDS |
| GGCCTAGCCAGACCAAGCCA+AGG | 0.560772 | 3_2:-86504934 | Msa0433880:five_prime_UTR |
| ACGGTAGTACTTGGAATCAA+CGG | 0.561307 | 3_2:+86501911 | None:intergenic |
| CGCAACCAACTCTGTTGCTG+TGG | 0.562029 | 3_2:-86500617 | Msa0433880:CDS |
| TGTCATCACACCACTCTAAG+TGG | 0.562990 | 3_2:-86500573 | Msa0433880:CDS |
| AAGGTTGTGCTTGTAGAAAG+AGG | 0.565517 | 3_2:-86500850 | Msa0433880:CDS |
| CCAGTTATACTGGTCATGAC+GGG | 0.572203 | 3_2:-86504270 | Msa0433880:CDS |
| AAAACAATGGTGACTACACA+AGG | 0.576219 | 3_2:-86502091 | Msa0433880:CDS |
| GCCAAATGAGCCCAATAATG+TGG | 0.579248 | 3_2:+86504023 | None:intergenic |
| AGCAACATCTCCAATATGCA+AGG | 0.580043 | 3_2:+86504049 | None:intergenic |
| AAATGAAGGACCTAATGGGT+TGG | 0.582195 | 3_2:+86504880 | None:intergenic |
| GGTTGCGGCCAGTGGTGAGA+AGG | 0.583884 | 3_2:+86500633 | None:intergenic |
| TAATAATGGCAGCTACTCAT+GGG | 0.584057 | 3_2:-86504806 | Msa0433880:exon |
| TTGTTCAGGAATACCATCAA+CGG | 0.585225 | 3_2:+86501956 | None:intergenic |
| TGTCTGGGTGTAGATAATAA+TGG | 0.587493 | 3_2:-86504820 | Msa0433880:exon |
| GTGACTACACAAGGGACGTA+GGG | 0.588370 | 3_2:-86502082 | Msa0433880:CDS |
| GATGCACTTTCCATGTCCAC+AGG | 0.595419 | 3_2:+86500757 | None:intergenic |
| CACAGCAACAGAGTTGGTTG+CGG | 0.609393 | 3_2:+86500618 | None:intergenic |
| AGAGCCCTAATAGCAATGAA+AGG | 0.609986 | 3_2:+86500703 | None:intergenic |
| TATAGGAAGACAAGAACTGT+GGG | 0.613254 | 3_2:+86504850 | None:intergenic |
| ATTGCTAAAATCAACGAAGA+GGG | 0.614781 | 3_2:-86504687 | Msa0433880:CDS |
| AATGACCACAGCAACAGAGT+TGG | 0.629425 | 3_2:+86500612 | None:intergenic |
| AATTGCTAAAATCAACGAAG+AGG | 0.634351 | 3_2:-86504688 | Msa0433880:CDS |
| CATCTCCAATATGCAAGGAA+GGG | 0.635228 | 3_2:+86504054 | None:intergenic |
| ACATAGTTCACCACTTAGAG+TGG | 0.637613 | 3_2:+86500563 | None:intergenic |
| ATGCTTGACAACGACACCAA+AGG | 0.644624 | 3_2:-86500869 | Msa0433880:CDS |
| GGTGACTACACAAGGGACGT+AGG | 0.645883 | 3_2:-86502083 | Msa0433880:CDS |
| TTGATGGTATTCCTGAACAA+AGG | 0.648077 | 3_2:-86501953 | Msa0433880:CDS |
| TTTGGCCGGCGGCGGCACTG+CGG | 0.654634 | 3_2:-86500674 | Msa0433880:CDS |
| TAAATTCAACGTGAGTCCTG+TGG | 0.654718 | 3_2:-86500773 | Msa0433880:CDS |
| GGACATGGAAAGTGCATCAG+TGG | 0.663275 | 3_2:-86500752 | Msa0433880:CDS |
| TAGAAAGAGGAACAAGTGCA+GGG | 0.668433 | 3_2:-86500837 | Msa0433880:CDS |
| CCTAGCCAGACCAAGCCAAG+GGG | 0.681589 | 3_2:-86504932 | Msa0433880:five_prime_UTR |
| GCTCTCTCTGATTTGGCCGG+CGG | 0.683883 | 3_2:-86500685 | Msa0433880:CDS |
| TATATGCAGAGGTATGGGCA+AGG | 0.693984 | 3_2:-86502137 | Msa0433880:intron |
| ACATTACCACTAGAAAACAA+TGG | 0.697246 | 3_2:-86502104 | Msa0433880:CDS |
| ATATAGGAAGACAAGAACTG+TGG | 0.701422 | 3_2:+86504849 | None:intergenic |
| GGTCATGACGGGATTGAGTG+TGG | 0.703759 | 3_2:-86504259 | Msa0433880:intron |
| CTAGCCAGACCAAGCCAAGG+GGG | 0.709982 | 3_2:-86504931 | Msa0433880:five_prime_UTR |
| AAACAATGGTGACTACACAA+GGG | 0.726560 | 3_2:-86502090 | Msa0433880:CDS |
| GGTAGTACTTGGAATCAACG+GGG | 0.827912 | 3_2:+86501913 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATATTTATATTTTTTTTAA+GGG | + | chr3_2:86502849-86502868 | None:intergenic | 0.0% |
| !!! | ATATATTTATATTTTTTTTA+AGG | + | chr3_2:86502850-86502869 | None:intergenic | 0.0% |
| !! | TGTACTATATAATTAATTAT+TGG | - | chr3_2:86501140-86501159 | Msa0433880:intron | 10.0% |
| !!! | ATATTGTTATGTTTTTTTAA+AGG | - | chr3_2:86501779-86501798 | Msa0433880:intron | 10.0% |
| !!! | TGTAAAAAAGTATAAATTAT+AGG | + | chr3_2:86502133-86502152 | None:intergenic | 10.0% |
| !! | TGTAAAAAAAAATTATTTAC+AGG | + | chr3_2:86502572-86502591 | None:intergenic | 10.0% |
| !! | TATCATGATTAATATATATA+TGG | - | chr3_2:86503038-86503057 | Msa0433880:intron | 10.0% |
| !!! | AAATACTTTTTTATCATTTT+TGG | - | chr3_2:86503099-86503118 | Msa0433880:intron | 10.0% |
| !!! | ACTAATATTGATTTTTATTA+TGG | + | chr3_2:86503723-86503742 | None:intergenic | 10.0% |
| !!! | TTTTTTTAATGAAAATTTGA+AGG | + | chr3_2:86503824-86503843 | None:intergenic | 10.0% |
| !!! | TAAAGACAAATTTTATATAT+AGG | + | chr3_2:86504338-86504357 | None:intergenic | 10.0% |
| !! | TATATAAAATTTGTCTTTAT+TGG | - | chr3_2:86504339-86504358 | Msa0433880:intron | 10.0% |
| !! | AAAACAAAAATAAAATAACA+TGG | - | chr3_2:86504402-86504421 | Msa0433880:intron | 10.0% |
| !! | TTCATATGTAGAATTTAAAT+GGG | + | chr3_2:86500818-86500837 | None:intergenic | 15.0% |
| !! | TTTCATATGTAGAATTTAAA+TGG | + | chr3_2:86500819-86500838 | None:intergenic | 15.0% |
| !!! | CTTAATTTTCCTATTTTTTA+TGG | - | chr3_2:86501018-86501037 | Msa0433880:intron | 15.0% |
| !! | GAAATAATGAATATATACTA+AGG | - | chr3_2:86501432-86501451 | Msa0433880:intron | 15.0% |
| !! | AAAAAGAAAGAAACAATATT+AGG | + | chr3_2:86501712-86501731 | None:intergenic | 15.0% |
| !!! | TGTTTTAATAAAGTTACTTT+TGG | + | chr3_2:86501831-86501850 | None:intergenic | 15.0% |
| !! | AAAAAAAAAACTAGATATTC+TGG | - | chr3_2:86501931-86501950 | Msa0433880:CDS | 15.0% |
| !! | ATTTATAGTTACATGTATAT+TGG | - | chr3_2:86502162-86502181 | Msa0433880:intron | 15.0% |
| !! | TTTATAGTTACATGTATATT+GGG | - | chr3_2:86502163-86502182 | Msa0433880:intron | 15.0% |
| !!! | TATGTAATTTTAGAATTTTG+CGG | - | chr3_2:86502186-86502205 | Msa0433880:intron | 15.0% |
| !!! | TGAATAAAGTAAATATGTTT+TGG | + | chr3_2:86502523-86502542 | None:intergenic | 15.0% |
| !!! | TTTTATAATTAGTAACAAAC+AGG | + | chr3_2:86502624-86502643 | None:intergenic | 15.0% |
| !! | AGTTAATTAATTAACTATGA+TGG | - | chr3_2:86503072-86503091 | Msa0433880:intron | 15.0% |
| !! | AATAATATTAATATATGCAG+AGG | - | chr3_2:86503210-86503229 | Msa0433880:intron | 15.0% |
| !!! | TCTTTGAATTTTTACATATA+TGG | + | chr3_2:86503516-86503535 | None:intergenic | 15.0% |
| !!! | AATATTTTTGTTCCAAATTT+TGG | - | chr3_2:86503592-86503611 | Msa0433880:intron | 15.0% |
| !! | TATATTGCATGTTATATATA+GGG | + | chr3_2:86504120-86504139 | None:intergenic | 15.0% |
| !! | CATAAAATAATACAACATAT+TGG | - | chr3_2:86504186-86504205 | Msa0433880:intron | 15.0% |
| !! | TAAGAGATAAAAAAAAATGT+TGG | + | chr3_2:86504383-86504402 | None:intergenic | 15.0% |
| !!! | TTTTTCGAATATATATTTTC+AGG | - | chr3_2:86504432-86504451 | Msa0433880:intron | 15.0% |
| !!! | ATTTATGCTTTATTATATTC+CGG | + | chr3_2:86504896-86504915 | None:intergenic | 15.0% |
| !! | ACAGAAAAATTATACATTGT+TGG | - | chr3_2:86500375-86500394 | Msa0433880:three_prime_UTR | 20.0% |
| !!! | TTTTAAAATACTAACTCCTA+CGG | - | chr3_2:86500403-86500422 | Msa0433880:three_prime_UTR | 20.0% |
| !! | TTTATAGAGAATAGAATGAA+GGG | + | chr3_2:86500456-86500475 | None:intergenic | 20.0% |
| !!! | TTTTATAGAGAATAGAATGA+AGG | + | chr3_2:86500457-86500476 | None:intergenic | 20.0% |
| !!! | TGATTATTTTTGTTAGAAGT+CGG | + | chr3_2:86500911-86500930 | None:intergenic | 20.0% |
| !! | ATCATGAAATTAAATTTGCA+AGG | - | chr3_2:86500927-86500946 | Msa0433880:intron | 20.0% |
| !! | TGCATTATAAAGTGATAAAA+TGG | + | chr3_2:86501560-86501579 | None:intergenic | 20.0% |
| !! | TTATAATGCAAAATAATACG+TGG | - | chr3_2:86501570-86501589 | Msa0433880:intron | 20.0% |
| !!! | AACAATATTAGGATTTTTGA+AGG | + | chr3_2:86501701-86501720 | None:intergenic | 20.0% |
| !!! | TGTTTCTTTCTTTTTTTTGA+AGG | - | chr3_2:86501717-86501736 | Msa0433880:intron | 20.0% |
| !!! | CATATCATTTTATATTGAGT+TGG | + | chr3_2:86501871-86501890 | None:intergenic | 20.0% |
| !! | CAACTCAATATAAAATGATA+TGG | - | chr3_2:86501869-86501888 | Msa0433880:intron | 20.0% |
| !! | TACTGAAATAAAAATACTGA+AGG | - | chr3_2:86502309-86502328 | Msa0433880:intron | 20.0% |
| !!! | AATATGCAATTTCTTTTTCT+TGG | + | chr3_2:86502377-86502396 | None:intergenic | 20.0% |
| !!! | TAAAGAGATATTTTATGTCT+AGG | + | chr3_2:86502411-86502430 | None:intergenic | 20.0% |
| !! | ATTAACGAGTTGTATATTAA+CGG | - | chr3_2:86503161-86503180 | Msa0433880:intron | 20.0% |
| !!! | AATTTTTACATATATGGTAC+TGG | + | chr3_2:86503510-86503529 | None:intergenic | 20.0% |
| !!! | TTGATCAATTTTTACGTATA+AGG | + | chr3_2:86503564-86503583 | None:intergenic | 20.0% |
| !! | GATATATTTAGTCCAAAATT+TGG | + | chr3_2:86503607-86503626 | None:intergenic | 20.0% |
| !!! | TTGAAGTAAAATTTTATCGA+AGG | + | chr3_2:86503635-86503654 | None:intergenic | 20.0% |
| !!! | ATTTTACTTCAATTTGAGAT+CGG | - | chr3_2:86503643-86503662 | Msa0433880:intron | 20.0% |
| !! | ATATTGCATGTTATATATAG+GGG | + | chr3_2:86504119-86504138 | None:intergenic | 20.0% |
| !! | GTATATTGCATGTTATATAT+AGG | + | chr3_2:86504121-86504140 | None:intergenic | 20.0% |
| ! | TTGGGTATTAAACAACATAA+AGG | + | chr3_2:86500606-86500625 | None:intergenic | 25.0% |
| ! | GTGAAGGTTTATAAATTAGT+TGG | + | chr3_2:86500889-86500908 | None:intergenic | 25.0% |
| !!! | TTAAGCTTTTTCAAAGTAGA+TGG | - | chr3_2:86501248-86501267 | Msa0433880:intron | 25.0% |
| ! | TTGAGTATATATTGTATGCT+AGG | + | chr3_2:86501398-86501417 | None:intergenic | 25.0% |
| ! | ATATTAATGTGCTCGTATAT+TGG | - | chr3_2:86501533-86501552 | Msa0433880:intron | 25.0% |
| !!! | AAGTTACTTTTGGTTTATTG+TGG | + | chr3_2:86501821-86501840 | None:intergenic | 25.0% |
| ! | ACTTTATTAAAACAGAAGTC+AGG | - | chr3_2:86501837-86501856 | Msa0433880:intron | 25.0% |
| ! | TCAATCTCAATGTTTGATTA+CGG | - | chr3_2:86501978-86501997 | Msa0433880:CDS | 25.0% |
| !! | CTTTGTTCTTGCTTTAAATT+GGG | + | chr3_2:86502007-86502026 | None:intergenic | 25.0% |
| ! | AATATCTCTTTAGCTAACAA+CGG | - | chr3_2:86502419-86502438 | Msa0433880:intron | 25.0% |
| ! | GGTAATTTGACTAAGTTATT+TGG | + | chr3_2:86502551-86502570 | None:intergenic | 25.0% |
| ! | GTAGTTGAAAACAACATTAA+AGG | - | chr3_2:86502598-86502617 | Msa0433880:intron | 25.0% |
| ! | TGGTAAATAGACACAAAATA+AGG | + | chr3_2:86502709-86502728 | None:intergenic | 25.0% |
| !!! | AGATCACTAACTTCATTTTT+AGG | + | chr3_2:86502898-86502917 | None:intergenic | 25.0% |
| ! | TATTAATATATGCAGAGGTA+TGG | - | chr3_2:86503215-86503234 | Msa0433880:intron | 25.0% |
| !! | ATTAATATATGCAGAGGTAT+GGG | - | chr3_2:86503216-86503235 | Msa0433880:intron | 25.0% |
| ! | AATGAGTAATCTCGAAAATT+TGG | + | chr3_2:86503937-86503956 | None:intergenic | 25.0% |
| ! | AAAAAAAACTCTCATTCTCA+AGG | + | chr3_2:86503966-86503985 | None:intergenic | 25.0% |
| ! | ACATAGAATGAAAGAGTTAT+TGG | - | chr3_2:86504161-86504180 | Msa0433880:intron | 25.0% |
| ! | AGTAAAAATATTTCGTTGAG+TGG | + | chr3_2:86504215-86504234 | None:intergenic | 25.0% |
| ! | GTTGAATTTATTGTAGATGA+AGG | + | chr3_2:86504575-86504594 | None:intergenic | 25.0% |
| ! | GCATATAATTGCACTAATTA+CGG | + | chr3_2:86504839-86504858 | None:intergenic | 25.0% |
| TCTATAAAAACCAACCCATT+AGG | - | chr3_2:86500468-86500487 | Msa0433880:three_prime_UTR | 30.0% | |
| AATTGCTAAAATCAACGAAG+AGG | - | chr3_2:86500670-86500689 | Msa0433880:CDS | 30.0% | |
| ATTGCTAAAATCAACGAAGA+GGG | - | chr3_2:86500671-86500690 | Msa0433880:CDS | 30.0% | |
| GGTATGATTAAACCCAAATA+AGG | + | chr3_2:86500698-86500717 | None:intergenic | 30.0% | |
| TATGTAGAATTTAAATGGGC+CGG | + | chr3_2:86500814-86500833 | None:intergenic | 30.0% | |
| CGTTATCAGCCATAAAAAAT+AGG | + | chr3_2:86501030-86501049 | None:intergenic | 30.0% | |
| !!! | TTTTTTATGGCTGATAACGA+AGG | - | chr3_2:86501031-86501050 | Msa0433880:intron | 30.0% |
| ! | ATGTTGCTATTCCACATTAT+TGG | - | chr3_2:86501324-86501343 | Msa0433880:intron | 30.0% |
| ! | TGTTGCTATTCCACATTATT+GGG | - | chr3_2:86501325-86501344 | Msa0433880:intron | 30.0% |
| TTGTATGCTAGGAATTATTG+TGG | + | chr3_2:86501387-86501406 | None:intergenic | 30.0% | |
| !! | GTTAAACTTTTATTTGTCGC+TGG | + | chr3_2:86501664-86501683 | None:intergenic | 30.0% |
| GGTTTATTGTGGAAAAATAG+TGG | + | chr3_2:86501810-86501829 | None:intergenic | 30.0% | |
| GATTGAACTCTTGAATTGAT+CGG | + | chr3_2:86501964-86501983 | None:intergenic | 30.0% | |
| CAATCTCAATGTTTGATTAC+GGG | - | chr3_2:86501979-86501998 | Msa0433880:CDS | 30.0% | |
| ! | GCTTTGTTCTTGCTTTAAAT+TGG | + | chr3_2:86502008-86502027 | None:intergenic | 30.0% |
| ATGAATCAGCACATCAAAAT+TGG | - | chr3_2:86502033-86502052 | Msa0433880:CDS | 30.0% | |
| CTAATTCTGTTTCCTTCTTA+TGG | + | chr3_2:86502931-86502950 | None:intergenic | 30.0% | |
| AGAATTTAACCTCAAATGTG+TGG | - | chr3_2:86502959-86502978 | Msa0433880:intron | 30.0% | |
| ACATTACCACTAGAAAACAA+TGG | - | chr3_2:86503254-86503273 | Msa0433880:intron | 30.0% | |
| !! | TTTACATATATGGTACTGGT+TGG | + | chr3_2:86503506-86503525 | None:intergenic | 30.0% |
| AATCTCGAAAATTTGGTTGA+CGG | + | chr3_2:86503930-86503949 | None:intergenic | 30.0% | |
| ! | ACATTTTAAATGTGGAGAAG+TGG | - | chr3_2:86504071-86504090 | Msa0433880:CDS | 30.0% |
| ! | CATTTTAAATGTGGAGAAGT+GGG | - | chr3_2:86504072-86504091 | Msa0433880:CDS | 30.0% |
| ! | ATTTTAAATGTGGAGAAGTG+GGG | - | chr3_2:86504073-86504092 | Msa0433880:CDS | 30.0% |
| !!! | AGATTGTGTTTTGACGTTTT+TGG | - | chr3_2:86504288-86504307 | Msa0433880:CDS | 30.0% |
| CTCTTATATGCTTACAACAA+AGG | - | chr3_2:86504629-86504648 | Msa0433880:CDS | 30.0% | |
| ! | GATTCCTTTCATTGCTATTA+GGG | - | chr3_2:86504651-86504670 | Msa0433880:CDS | 30.0% |
| TGAGAAATGAAGGACCTAAT+GGG | + | chr3_2:86500485-86500504 | None:intergenic | 35.0% | |
| TTGAGAAATGAAGGACCTAA+TGG | + | chr3_2:86500486-86500505 | None:intergenic | 35.0% | |
| TATAGGAAGACAAGAACTGT+GGG | + | chr3_2:86500511-86500530 | None:intergenic | 35.0% | |
| ATATAGGAAGACAAGAACTG+TGG | + | chr3_2:86500512-86500531 | None:intergenic | 35.0% | |
| TGTCTGGGTGTAGATAATAA+TGG | - | chr3_2:86500538-86500557 | Msa0433880:three_prime_UTR | 35.0% | |
| ATAATAATGGCAGCTACTCA+TGG | - | chr3_2:86500551-86500570 | Msa0433880:exon | 35.0% | |
| TAATAATGGCAGCTACTCAT+GGG | - | chr3_2:86500552-86500571 | Msa0433880:exon | 35.0% | |
| ! | ACAACTCACGAATGCATTTT+GGG | + | chr3_2:86500624-86500643 | None:intergenic | 35.0% |
| GGGTCAAGTTCAAAAGAATT+TGG | + | chr3_2:86500719-86500738 | None:intergenic | 35.0% | |
| ! | GACAACATCATAGATTTTGC+AGG | - | chr3_2:86500770-86500789 | Msa0433880:CDS | 35.0% |
| ! | TTTTTGTTAGAAGTCGGTGA+AGG | + | chr3_2:86500905-86500924 | None:intergenic | 35.0% |
| !! | AGATTTCGTTTTGGATCCAT+TGG | - | chr3_2:86501058-86501077 | Msa0433880:intron | 35.0% |
| GAGTGTGGTACGTATATATA+TGG | - | chr3_2:86501114-86501133 | Msa0433880:intron | 35.0% | |
| GTAGATGGAGTTGTTCATTA+CGG | - | chr3_2:86501263-86501282 | Msa0433880:intron | 35.0% | |
| TAGATGGAGTTGTTCATTAC+GGG | - | chr3_2:86501264-86501283 | Msa0433880:intron | 35.0% | |
| CTGGTGTCTATAATGACTAT+GGG | + | chr3_2:86501645-86501664 | None:intergenic | 35.0% | |
| TCAGCACATCAAAATTGGTA+AGG | - | chr3_2:86502038-86502057 | Msa0433880:CDS | 35.0% | |
| CAGCACATCAAAATTGGTAA+GGG | - | chr3_2:86502039-86502058 | Msa0433880:CDS | 35.0% | |
| ATTGAGAGAAACACACTTCA+AGG | - | chr3_2:86502080-86502099 | Msa0433880:CDS | 35.0% | |
| ACGAGTTGTATATTAACGGT+AGG | - | chr3_2:86503165-86503184 | Msa0433880:intron | 35.0% | |
| ! | TAGTCACCATTGTTTTCTAG+TGG | + | chr3_2:86503263-86503282 | None:intergenic | 35.0% |
| AAAACAATGGTGACTACACA+AGG | - | chr3_2:86503267-86503286 | Msa0433880:intron | 35.0% | |
| AAACAATGGTGACTACACAA+GGG | - | chr3_2:86503268-86503287 | Msa0433880:intron | 35.0% | |
| ACAATCATCTCAACAACCTT+TGG | - | chr3_2:86503357-86503376 | Msa0433880:intron | 35.0% | |
| TTGTTCAGGAATACCATCAA+CGG | + | chr3_2:86503405-86503424 | None:intergenic | 35.0% | |
| ! | TTGATGGTATTCCTGAACAA+AGG | - | chr3_2:86503405-86503424 | Msa0433880:intron | 35.0% |
| ATCTCGAAAATTTGGTTGAC+GGG | + | chr3_2:86503929-86503948 | None:intergenic | 35.0% | |
| ! | GACCTCACACATTTTAAATG+TGG | - | chr3_2:86504063-86504082 | Msa0433880:CDS | 35.0% |
| ! | CTCCACATTTAAAATGTGTG+AGG | + | chr3_2:86504068-86504087 | None:intergenic | 35.0% |
| CTCTTTCATTCTATGTCTGT+GGG | + | chr3_2:86504157-86504176 | None:intergenic | 35.0% | |
| ACTCTTTCATTCTATGTCTG+TGG | + | chr3_2:86504158-86504177 | None:intergenic | 35.0% | |
| ! | GGATTCCTTTCATTGCTATT+AGG | - | chr3_2:86504650-86504669 | Msa0433880:CDS | 35.0% |
| ! | CTGGCTGTTGAATTAACTTT+TGG | + | chr3_2:86504982-86505001 | None:intergenic | 35.0% |
| ! | AAATGAAGGACCTAATGGGT+TGG | + | chr3_2:86500481-86500500 | None:intergenic | 40.0% |
| CTGTGGGATTTGAGAAATGA+AGG | + | chr3_2:86500495-86500514 | None:intergenic | 40.0% | |
| TTCCTATATTGCGTGTGTCT+GGG | - | chr3_2:86500523-86500542 | Msa0433880:three_prime_UTR | 40.0% | |
| ! | CACAACTCACGAATGCATTT+TGG | + | chr3_2:86500625-86500644 | None:intergenic | 40.0% |
| ! | AACGAAGAGGGTCCTTATTT+GGG | - | chr3_2:86500683-86500702 | Msa0433880:CDS | 40.0% |
| !! | AGCCTGGATTTTGAAGAAGA+GGG | + | chr3_2:86500739-86500758 | None:intergenic | 40.0% |
| !! | TAGCCTGGATTTTGAAGAAG+AGG | + | chr3_2:86500740-86500759 | None:intergenic | 40.0% |
| ! | TTATGGCTGATAACGAAGGA+AGG | - | chr3_2:86501035-86501054 | Msa0433880:intron | 40.0% |
| ! | GAAGGAAGGAGATTTCGTTT+TGG | - | chr3_2:86501049-86501068 | Msa0433880:intron | 40.0% |
| !! | TATAACTGGTTTGTCGCCAA+TGG | + | chr3_2:86501077-86501096 | None:intergenic | 40.0% |
| ACCAGTTATACTGGTCATGA+CGG | - | chr3_2:86501087-86501106 | Msa0433880:intron | 40.0% | |
| CATCTCCAATATGCAAGGAA+GGG | + | chr3_2:86501307-86501326 | None:intergenic | 40.0% | |
| ACATCTCCAATATGCAAGGA+AGG | + | chr3_2:86501308-86501327 | None:intergenic | 40.0% | |
| AGCAACATCTCCAATATGCA+AGG | + | chr3_2:86501312-86501331 | None:intergenic | 40.0% | |
| TCCACATTATTGGGCTCATT+TGG | - | chr3_2:86501334-86501353 | Msa0433880:intron | 40.0% | |
| TGTCCTTACCAACTGAGTTA+AGG | - | chr3_2:86501475-86501494 | Msa0433880:intron | 40.0% | |
| ! | TGACCTTAACTCAGTTGGTA+AGG | + | chr3_2:86501481-86501500 | None:intergenic | 40.0% |
| TACCAACTGAGTTAAGGTCA+CGG | - | chr3_2:86501481-86501500 | Msa0433880:intron | 40.0% | |
| GCTGGTGTCTATAATGACTA+TGG | + | chr3_2:86501646-86501665 | None:intergenic | 40.0% | |
| !! | ACACACTTCAAGGTTCTAAG+TGG | - | chr3_2:86502090-86502109 | Msa0433880:CDS | 40.0% |
| !! | CACACTTCAAGGTTCTAAGT+GGG | - | chr3_2:86502091-86502110 | Msa0433880:CDS | 40.0% |
| CTTTCGTCGTTTCCATAAGA+AGG | - | chr3_2:86502916-86502935 | Msa0433880:intron | 40.0% | |
| CGTCTCATAACTTACCTCTA+AGG | - | chr3_2:86502988-86503007 | Msa0433880:intron | 40.0% | |
| TCAACGGGAAAAATCTCTTC+TGG | + | chr3_2:86503389-86503408 | None:intergenic | 40.0% | |
| ! | GAAGAGATTTTTCCCGTTGA+TGG | - | chr3_2:86503389-86503408 | Msa0433880:intron | 40.0% |
| TGTTCAGGAATACCATCAAC+GGG | + | chr3_2:86503404-86503423 | None:intergenic | 40.0% | |
| AACAAAGGCAACATGCTCTT+TGG | - | chr3_2:86503420-86503439 | Msa0433880:intron | 40.0% | |
| ACAAAGGCAACATGCTCTTT+GGG | - | chr3_2:86503421-86503440 | Msa0433880:intron | 40.0% | |
| ACGGTAGTACTTGGAATCAA+CGG | + | chr3_2:86503450-86503469 | None:intergenic | 40.0% | |
| TTTGGCAATACGGTAGTACT+TGG | + | chr3_2:86503459-86503478 | None:intergenic | 40.0% | |
| !!! | CCTCGAGTTTTTTGGCAATA+CGG | + | chr3_2:86503469-86503488 | None:intergenic | 40.0% |
| TTGCCAAAAAACTCGAGGTA+TGG | - | chr3_2:86503471-86503490 | Msa0433880:intron | 40.0% | |
| !!! | AGACCATACCTCGAGTTTTT+TGG | + | chr3_2:86503477-86503496 | None:intergenic | 40.0% |
| AAAAACTCGAGGTATGGTCT+AGG | - | chr3_2:86503477-86503496 | Msa0433880:intron | 40.0% | |
| CTTTCTACAAGCACAACCTT+TGG | + | chr3_2:86504508-86504527 | None:intergenic | 40.0% | |
| AAGGTTGTGCTTGTAGAAAG+AGG | - | chr3_2:86504508-86504527 | Msa0433880:intron | 40.0% | |
| TAGAAAGAGGAACAAGTGCA+GGG | - | chr3_2:86504521-86504540 | Msa0433880:intron | 40.0% | |
| TAAATTCAACGTGAGTCCTG+TGG | - | chr3_2:86504585-86504604 | Msa0433880:intron | 40.0% | |
| AGAGCCCTAATAGCAATGAA+AGG | + | chr3_2:86504658-86504677 | None:intergenic | 40.0% | |
| TATTAGGGCTCTCTCTGATT+TGG | - | chr3_2:86504666-86504685 | Msa0433880:CDS | 40.0% | |
| ACATAGTTCACCACTTAGAG+TGG | + | chr3_2:86504798-86504817 | None:intergenic | 40.0% | |
| CGTAGACAACAACTTTGTTC+TGG | - | chr3_2:86504862-86504881 | Msa0433880:five_prime_UTR | 40.0% | |
| GACAACAACTTTGTTCTGGT+TGG | - | chr3_2:86504866-86504885 | Msa0433880:five_prime_UTR | 40.0% | |
| CTTCCTATATTGCGTGTGTC+TGG | - | chr3_2:86500522-86500541 | Msa0433880:three_prime_UTR | 45.0% | |
| CAACGAAGAGGGTCCTTATT+TGG | - | chr3_2:86500682-86500701 | Msa0433880:CDS | 45.0% | |
| GACCCTCTTCTTCAAAATCC+AGG | - | chr3_2:86500734-86500753 | Msa0433880:CDS | 45.0% | |
| TTGTCACTAGCAGTATAGCC+TGG | + | chr3_2:86500755-86500774 | None:intergenic | 45.0% | |
| GTAAGTGCATGCGTCTATTC+CGG | - | chr3_2:86500792-86500811 | Msa0433880:CDS | 45.0% | |
| TGGCGACAAACCAGTTATAC+TGG | - | chr3_2:86501078-86501097 | Msa0433880:intron | 45.0% | |
| CCAGTTATACTGGTCATGAC+GGG | - | chr3_2:86501088-86501107 | Msa0433880:intron | 45.0% | |
| GTTGTTCATTACGGGATTGC+TGG | - | chr3_2:86501272-86501291 | Msa0433880:intron | 45.0% | |
| GCAAACCCTTCCTTGCATAT+TGG | - | chr3_2:86501299-86501318 | Msa0433880:intron | 45.0% | |
| GCCAAATGAGCCCAATAATG+TGG | + | chr3_2:86501338-86501357 | None:intergenic | 45.0% | |
| ATTGGGCTCATTTGGCACTT+TGG | - | chr3_2:86501342-86501361 | Msa0433880:intron | 45.0% | |
| ACCAACTGAGTTAAGGTCAC+GGG | - | chr3_2:86501482-86501501 | Msa0433880:intron | 45.0% | |
| ACGACATGACCACACATTTG+AGG | + | chr3_2:86502971-86502990 | None:intergenic | 45.0% | |
| ! | TATATGCAGAGGTATGGGCA+AGG | - | chr3_2:86503221-86503240 | Msa0433880:intron | 45.0% |
| GTCAGCAGCACTTATGTTTG+AGG | + | chr3_2:86503324-86503343 | None:intergenic | 45.0% | |
| ! | TCTCTTCTGGTTGGTACCAA+AGG | + | chr3_2:86503376-86503395 | None:intergenic | 45.0% |
| CGGGAAAAATCTCTTCTGGT+TGG | + | chr3_2:86503385-86503404 | None:intergenic | 45.0% | |
| AGAGCATGTTGCCTTTGTTC+AGG | + | chr3_2:86503419-86503438 | None:intergenic | 45.0% | |
| GGTAGTACTTGGAATCAACG+GGG | + | chr3_2:86503448-86503467 | None:intergenic | 45.0% | |
| CGGTAGTACTTGGAATCAAC+GGG | + | chr3_2:86503449-86503468 | None:intergenic | 45.0% | |
| CCGTATTGCCAAAAAACTCG+AGG | - | chr3_2:86503466-86503485 | Msa0433880:intron | 45.0% | |
| ATGCTTGACAACGACACCAA+AGG | - | chr3_2:86504489-86504508 | Msa0433880:intron | 45.0% | |
| GTAGAAAGAGGAACAAGTGC+AGG | - | chr3_2:86504520-86504539 | Msa0433880:intron | 45.0% | |
| AATGACCACAGCAACAGAGT+TGG | + | chr3_2:86504749-86504768 | None:intergenic | 45.0% | |
| TGTCATCACACCACTCTAAG+TGG | - | chr3_2:86504785-86504804 | Msa0433880:CDS | 45.0% | |
| ! | CTTTGTTCTGGTTGGTTGTC+CGG | - | chr3_2:86504874-86504893 | Msa0433880:five_prime_UTR | 45.0% |
| !!! | ATCTTTAAAATTATAAATAT+AGG | - | chr3_2:86502259-86502278 | Msa0433880:intron | 5.0% |
| !! | TTAAAAAAAAAAAATTTCTT+TGG | + | chr3_2:86502354-86502373 | None:intergenic | 5.0% |
| !!! | TATATATATGATTTTAATTA+TGG | + | chr3_2:86502729-86502748 | None:intergenic | 5.0% |
| !!! | ATATTTATATTTTTTTTAAG+GGG | + | chr3_2:86502848-86502867 | None:intergenic | 5.0% |
| !!! | TATAAAAAAAATCATATTTT+TGG | + | chr3_2:86503749-86503768 | None:intergenic | 5.0% |
| AGAATGAAGGGTAACCCCCT+TGG | + | chr3_2:86500444-86500463 | None:intergenic | 50.0% | |
| CACCCAGACACACGCAATAT+AGG | + | chr3_2:86500528-86500547 | None:intergenic | 50.0% | |
| CCCGTCATGACCAGTATAAC+TGG | + | chr3_2:86501091-86501110 | None:intergenic | 50.0% | |
| !! | CTCATTTGGCACTTTGGAGC+TGG | - | chr3_2:86501348-86501367 | Msa0433880:intron | 50.0% |
| TCCCGTGACCTTAACTCAGT+TGG | + | chr3_2:86501486-86501505 | None:intergenic | 50.0% | |
| GTGACTACACAAGGGACGTA+GGG | - | chr3_2:86503276-86503295 | Msa0433880:intron | 50.0% | |
| AATGTGGAGAAGTGGGGTGT+CGG | - | chr3_2:86504079-86504098 | Msa0433880:CDS | 50.0% | |
| GTCTGTGGGCTTAACTCAGT+TGG | + | chr3_2:86504143-86504162 | None:intergenic | 50.0% | |
| GATGCACTTTCCATGTCCAC+AGG | + | chr3_2:86504604-86504623 | None:intergenic | 50.0% | |
| ! | GGACATGGAAAGTGCATCAG+TGG | - | chr3_2:86504606-86504625 | Msa0433880:CDS | 50.0% |
| ! | CACAGCAACAGAGTTGGTTG+CGG | + | chr3_2:86504743-86504762 | None:intergenic | 50.0% |
| ! | GGTCATGACGGGATTGAGTG+TGG | - | chr3_2:86501099-86501118 | Msa0433880:intron | 55.0% |
| !! | TTTGGCACTTTGGAGCTGGC+AGG | - | chr3_2:86501352-86501371 | Msa0433880:intron | 55.0% |
| TGACGACGTGAGAGCCTTAG+AGG | + | chr3_2:86503005-86503024 | None:intergenic | 55.0% | |
| GCTCTCACGTCGTCATTGCT+AGG | - | chr3_2:86503010-86503029 | Msa0433880:intron | 55.0% | |
| GGTGACTACACAAGGGACGT+AGG | - | chr3_2:86503275-86503294 | Msa0433880:intron | 55.0% | |
| ! | ATGTGGAGAAGTGGGGTGTC+GGG | - | chr3_2:86504080-86504099 | Msa0433880:CDS | 55.0% |
| CAACGTGAGTCCTGTGGACA+TGG | - | chr3_2:86504591-86504610 | Msa0433880:CDS | 55.0% | |
| !! | AGGGCTCTCTCTGATTTGGC+CGG | - | chr3_2:86504670-86504689 | Msa0433880:CDS | 55.0% |
| GGCTGATACCTTCTCACCAC+TGG | - | chr3_2:86504717-86504736 | Msa0433880:CDS | 55.0% | |
| CGCAACCAACTCTGTTGCTG+TGG | - | chr3_2:86504741-86504760 | Msa0433880:CDS | 55.0% | |
| GCCTAGCCAGACCAAGCCAA+GGG | - | chr3_2:86500425-86500444 | Msa0433880:three_prime_UTR | 60.0% | |
| CCTAGCCAGACCAAGCCAAG+GGG | - | chr3_2:86500426-86500445 | Msa0433880:three_prime_UTR | 60.0% | |
| CTAGCCAGACCAAGCCAAGG+GGG | - | chr3_2:86500427-86500446 | Msa0433880:three_prime_UTR | 60.0% | |
| !! | GTAACCCCCTTGGCTTGGTC+TGG | + | chr3_2:86500434-86500453 | None:intergenic | 60.0% |
| GAAGGGTAACCCCCTTGGCT+TGG | + | chr3_2:86500439-86500458 | None:intergenic | 60.0% | |
| !! | TGTGGAGAAGTGGGGTGTCG+GGG | - | chr3_2:86504081-86504100 | Msa0433880:CDS | 60.0% |
| !! | GCTCTCTCTGATTTGGCCGG+CGG | - | chr3_2:86504673-86504692 | Msa0433880:CDS | 60.0% |
| ! | ACAGAGTTGGTTGCGGCCAG+TGG | + | chr3_2:86504736-86504755 | None:intergenic | 60.0% |
| GCTTGGTCTGGCTAGGCCGT+AGG | + | chr3_2:86500422-86500441 | None:intergenic | 65.0% | |
| GGCCTAGCCAGACCAAGCCA+AGG | - | chr3_2:86500424-86500443 | Msa0433880:three_prime_UTR | 65.0% | |
| !! | CCCCTTGGCTTGGTCTGGCT+AGG | + | chr3_2:86500429-86500448 | None:intergenic | 65.0% |
| !! | CTCTCTGATTTGGCCGGCGG+CGG | - | chr3_2:86504676-86504695 | Msa0433880:CDS | 65.0% |
| GGTTGCGGCCAGTGGTGAGA+AGG | + | chr3_2:86504728-86504747 | None:intergenic | 65.0% | |
| CGGCACTGCGGAGTCGAACG+AGG | - | chr3_2:86504696-86504715 | Msa0433880:CDS | 70.0% | |
| TTTGGCCGGCGGCGGCACTG+CGG | - | chr3_2:86504684-86504703 | Msa0433880:CDS | 75.0% | |
| ! | CGACTCCGCAGTGCCGCCGC+CGG | + | chr3_2:86504692-86504711 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 86500371 | 86505009 | 86500371 | ID=Msa0433880;Name=Msa0433880 |
| chr3_2 | mRNA | 86500371 | 86505009 | 86500371 | ID=Msa0433880-mRNA-1;Parent=Msa0433880;Name=Msa0433880-mRNA-1;_AED=0.28;_eAED=0.28;_QI=186|1|1|1|1|1|5|199|357 |
| chr3_2 | exon | 86500371 | 86500926 | 86500371 | ID=Msa0433880-mRNA-1:exon:25066;Parent=Msa0433880-mRNA-1 |
| chr3_2 | exon | 86501893 | 86502150 | 86501893 | ID=Msa0433880-mRNA-1:exon:25065;Parent=Msa0433880-mRNA-1 |
| chr3_2 | exon | 86504007 | 86504162 | 86504007 | ID=Msa0433880-mRNA-1:exon:25064;Parent=Msa0433880-mRNA-1 |
| chr3_2 | exon | 86504260 | 86504327 | 86504260 | ID=Msa0433880-mRNA-1:exon:25063;Parent=Msa0433880-mRNA-1 |
| chr3_2 | exon | 86504589 | 86505009 | 86504589 | ID=Msa0433880-mRNA-1:exon:25062;Parent=Msa0433880-mRNA-1 |
| chr3_2 | five_prime_UTR | 86504824 | 86505009 | 86504824 | ID=Msa0433880-mRNA-1:five_prime_utr;Parent=Msa0433880-mRNA-1 |
| chr3_2 | CDS | 86504589 | 86504823 | 86504589 | ID=Msa0433880-mRNA-1:cds;Parent=Msa0433880-mRNA-1 |
| chr3_2 | CDS | 86504260 | 86504327 | 86504260 | ID=Msa0433880-mRNA-1:cds;Parent=Msa0433880-mRNA-1 |
| chr3_2 | CDS | 86504007 | 86504162 | 86504007 | ID=Msa0433880-mRNA-1:cds;Parent=Msa0433880-mRNA-1 |
| chr3_2 | CDS | 86501893 | 86502150 | 86501893 | ID=Msa0433880-mRNA-1:cds;Parent=Msa0433880-mRNA-1 |
| chr3_2 | CDS | 86500570 | 86500926 | 86500570 | ID=Msa0433880-mRNA-1:cds;Parent=Msa0433880-mRNA-1 |
| chr3_2 | three_prime_UTR | 86500371 | 86500569 | 86500371 | ID=Msa0433880-mRNA-1:three_prime_utr;Parent=Msa0433880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
