Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1238330 | XP_013444879.1 | 90.116 | 516 | 27 | 2 | 1 | 493 | 1 | 515 | 0.0 | 967 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1238330 | sp|Q8NBL1|PGLT1_HUMAN | 25.287 | 348 | 202 | 11 | 111 | 418 | 50 | 379 | 8.46e-20 | 94.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1238330 | A0A072TN56 | 90.116 | 516 | 27 | 2 | 1 | 493 | 1 | 515 | 0.0 | 967 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0614920 | Msa1238330 | 0.812378 | 4.368532e-51 | -8.615850e-47 |
| Msa0648860 | Msa1238330 | 0.800715 | 1.265354e-48 | -8.615850e-47 |
| Msa0672760 | Msa1238330 | 0.814241 | 1.703134e-51 | -8.615850e-47 |
| Msa0801780 | Msa1238330 | 0.800615 | 1.326171e-48 | -8.615850e-47 |
| Msa0200850 | Msa1238330 | 0.829435 | 5.156822e-55 | -8.615850e-47 |
| Msa1238330 | Msa1252960 | 0.806637 | 7.467250e-50 | -8.615850e-47 |
| Msa1238330 | Msa1319130 | 0.871841 | 5.024153e-67 | -8.615850e-47 |
| Msa1238330 | Msa1390020 | 0.818272 | 2.137469e-52 | -8.615850e-47 |
| Msa1238330 | Msa1446900 | 0.808180 | 3.515293e-50 | -8.615850e-47 |
| Msa1238330 | Msa1450880 | 0.814617 | 1.406419e-51 | -8.615850e-47 |
| Msa0387720 | Msa1238330 | 0.801467 | 8.880015e-49 | -8.615850e-47 |
| Msa0417330 | Msa1238330 | 0.814635 | 1.393834e-51 | -8.615850e-47 |
| Msa0423510 | Msa1238330 | 0.803789 | 2.947811e-49 | -8.615850e-47 |
| Msa0476330 | Msa1238330 | 0.805190 | 1.504533e-49 | -8.615850e-47 |
| Msa1009110 | Msa1238330 | 0.812241 | 4.682071e-51 | -8.615850e-47 |
| Msa0243480 | Msa1238330 | 0.842690 | 2.216351e-58 | -8.615850e-47 |
| Msa0264830 | Msa1238330 | 0.800638 | 1.311812e-48 | -8.615850e-47 |
| Msa0281930 | Msa1238330 | 0.832058 | 1.173752e-55 | -8.615850e-47 |
| Msa0314070 | Msa1238330 | 0.805834 | 1.102452e-49 | -8.615850e-47 |
| Msa0321080 | Msa1238330 | 0.841977 | 3.424024e-58 | -8.615850e-47 |
| Msa1173780 | Msa1238330 | 0.868851 | 4.803072e-66 | -8.615850e-47 |
| Msa1191250 | Msa1238330 | 0.838628 | 2.568255e-57 | -8.615850e-47 |
| Msa1201200 | Msa1238330 | 0.842217 | 2.958804e-58 | -8.615850e-47 |
| Msa1201230 | Msa1238330 | 0.801717 | 7.894328e-49 | -8.615850e-47 |
| Msa0520330 | Msa1238330 | 0.801251 | 9.835698e-49 | -8.615850e-47 |
| Msa0538670 | Msa1238330 | 0.804913 | 1.719139e-49 | -8.615850e-47 |
| Msa0888260 | Msa1238330 | 0.801501 | 8.740805e-49 | -8.615850e-47 |
| Msa0939140 | Msa1238330 | 0.823397 | 1.416160e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1238330 | MtrunA17_Chr8g0349361 | 90.116 | 516 | 27 | 2 | 1 | 493 | 1 | 515 | 0.0 | 967 |
| Msa1238330 | MtrunA17_Chr8g0349371 | 72.125 | 513 | 101 | 7 | 6 | 493 | 3 | 498 | 0.0 | 749 |
| Msa1238330 | MtrunA17_Chr6g0471441 | 56.977 | 430 | 161 | 2 | 81 | 486 | 72 | 501 | 0.0 | 525 |
| Msa1238330 | MtrunA17_Chr5g0397701 | 51.772 | 508 | 189 | 10 | 20 | 486 | 6 | 498 | 0.0 | 520 |
| Msa1238330 | MtrunA17_Chr8g0349241 | 54.566 | 438 | 171 | 5 | 68 | 479 | 53 | 488 | 7.97e-178 | 508 |
| Msa1238330 | MtrunA17_Chr7g0247261 | 50.242 | 414 | 172 | 7 | 76 | 459 | 34 | 443 | 2.91e-153 | 444 |
| Msa1238330 | MtrunA17_Chr7g0247251 | 52.020 | 396 | 159 | 5 | 94 | 459 | 2 | 396 | 2.22e-152 | 440 |
| Msa1238330 | MtrunA17_Chr3g0104841 | 44.624 | 372 | 177 | 6 | 109 | 457 | 100 | 465 | 1.25e-113 | 343 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1238330 | AT2G45830.4 | 57.980 | 495 | 167 | 8 | 27 | 491 | 36 | 519 | 0.0 | 579 |
| Msa1238330 | AT2G45830.1 | 57.980 | 495 | 167 | 8 | 27 | 491 | 36 | 519 | 0.0 | 579 |
| Msa1238330 | AT3G61270.1 | 55.000 | 500 | 189 | 6 | 17 | 491 | 8 | 496 | 0.0 | 557 |
| Msa1238330 | AT5G23850.1 | 58.409 | 440 | 143 | 6 | 81 | 486 | 101 | 534 | 0.0 | 535 |
| Msa1238330 | AT3G48980.2 | 55.982 | 443 | 163 | 5 | 76 | 486 | 95 | 537 | 0.0 | 528 |
| Msa1238330 | AT3G48980.1 | 55.982 | 443 | 163 | 5 | 76 | 486 | 89 | 531 | 0.0 | 528 |
| Msa1238330 | AT2G45830.3 | 65.079 | 378 | 108 | 2 | 138 | 491 | 1 | 378 | 0.0 | 522 |
| Msa1238330 | AT2G45830.6 | 65.079 | 378 | 108 | 2 | 138 | 491 | 1 | 378 | 0.0 | 522 |
| Msa1238330 | AT2G45830.2 | 65.079 | 378 | 108 | 2 | 138 | 491 | 1 | 378 | 0.0 | 522 |
| Msa1238330 | AT2G45830.5 | 65.079 | 378 | 108 | 2 | 138 | 491 | 1 | 378 | 0.0 | 522 |
| Msa1238330 | AT3G61270.2 | 63.130 | 377 | 116 | 1 | 138 | 491 | 1 | 377 | 3.12e-177 | 503 |
| Msa1238330 | AT1G63420.1 | 54.419 | 430 | 162 | 5 | 91 | 486 | 145 | 574 | 2.64e-166 | 482 |
| Msa1238330 | AT3G61280.1 | 45.168 | 507 | 236 | 6 | 22 | 486 | 24 | 530 | 1.40e-155 | 453 |
| Msa1238330 | AT2G45840.1 | 48.402 | 438 | 192 | 5 | 82 | 490 | 86 | 518 | 1.21e-150 | 440 |
| Msa1238330 | AT3G61290.1 | 49.423 | 433 | 185 | 5 | 83 | 486 | 17 | 444 | 9.89e-149 | 433 |
| Msa1238330 | AT1G63420.2 | 59.060 | 298 | 116 | 3 | 91 | 382 | 145 | 442 | 1.59e-124 | 372 |
| Msa1238330 | AT1G07220.1 | 40.558 | 466 | 214 | 12 | 40 | 456 | 22 | 473 | 5.08e-118 | 356 |
| Msa1238330 | AT3G61280.2 | 46.505 | 329 | 159 | 4 | 22 | 333 | 24 | 352 | 2.01e-98 | 301 |
Find 110 sgRNAs with CRISPR-Local
Find 289 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACAAGACAGGTAGAAATT+TGG | 0.176694 | 8_2:+18356869 | Msa1238330:CDS |
| ATAGAGTACCTTATGCTTAT+TGG | 0.187130 | 8_2:+18355452 | Msa1238330:CDS |
| TATTGTAACTTTAGCCTTCT+TGG | 0.194591 | 8_2:-18352795 | None:intergenic |
| AAACATATCTTAAACTCTTC+TGG | 0.202488 | 8_2:+18352738 | Msa1238330:CDS |
| TTAAAACCATGGAGAGAAAA+AGG | 0.219883 | 8_2:+18354243 | Msa1238330:CDS |
| CATTTACTATTATCTCTAAT+TGG | 0.229440 | 8_2:-18356196 | None:intergenic |
| AAAAGTTCATGTAAAGTTAA+AGG | 0.231019 | 8_2:-18356829 | None:intergenic |
| TGTTCCCAGATTGGTCCTTT+TGG | 0.251598 | 8_2:+18354559 | Msa1238330:CDS |
| TCCTGGCAAGTTGCCTGATT+TGG | 0.279726 | 8_2:+18354419 | Msa1238330:CDS |
| TTATTAAAGTACATAATTTC+AGG | 0.296101 | 8_2:+18354024 | Msa1238330:intron |
| TTCCTAGTTGCAGCAACATT+AGG | 0.310919 | 8_2:-18355484 | None:intergenic |
| GTGGAAATTCTTGTTCTTTG+TGG | 0.315442 | 8_2:-18354095 | None:intergenic |
| AACAAGACAGGTAGAAATTT+GGG | 0.334599 | 8_2:+18356870 | Msa1238330:CDS |
| CTTGTCCCTCATACTTTAGA+TGG | 0.357728 | 8_2:+18354208 | Msa1238330:CDS |
| CATACAAGAGGATTTAGATA+TGG | 0.359929 | 8_2:+18356600 | Msa1238330:CDS |
| TCCTAGTTGCAGCAACATTA+GGG | 0.365225 | 8_2:-18355483 | None:intergenic |
| AAATTAGCCTTATGAATAAC+AGG | 0.368661 | 8_2:-18354468 | None:intergenic |
| AACATATCTTAAACTCTTCT+GGG | 0.371728 | 8_2:+18352739 | Msa1238330:CDS |
| TTAGATATTGTTCAGATCAA+TGG | 0.371772 | 8_2:+18354523 | Msa1238330:CDS |
| CAATTATTGAGGTTGTTTCC+TGG | 0.376651 | 8_2:+18354402 | Msa1238330:CDS |
| AAAGGAGGTGGTGAAGCATT+TGG | 0.395786 | 8_2:-18354498 | None:intergenic |
| TTATGTTTGATTGTGAAGAT+AGG | 0.400717 | 8_2:+18354445 | Msa1238330:CDS |
| TGGATATTGTGTTCCCAGAT+TGG | 0.404783 | 8_2:+18354550 | Msa1238330:CDS |
| CAAGAGATGTGTTCACTTTG+TGG | 0.415967 | 8_2:+18354370 | Msa1238330:CDS |
| AGTTAGTGAGAAATACATTA+TGG | 0.416709 | 8_2:+18356090 | Msa1238330:CDS |
| AAATTTGGGAAGATGAATAT+TGG | 0.417589 | 8_2:+18356884 | Msa1238330:CDS |
| CATCCCCAAAAGGACCAATC+TGG | 0.419621 | 8_2:-18354564 | None:intergenic |
| TGTAAAGTTAAAGGATCATA+TGG | 0.424187 | 8_2:-18356820 | None:intergenic |
| GTTTGACTATTAAGATTTGT+TGG | 0.424661 | 8_2:-18354186 | None:intergenic |
| TCTCTAACTCTTGCTATATG+AGG | 0.424751 | 8_2:-18352680 | None:intergenic |
| TGGATCCATTACAACACTAT+TGG | 0.426661 | 8_2:+18356173 | Msa1238330:CDS |
| ATGGATCCATCTAAAGTATG+AGG | 0.427483 | 8_2:-18354214 | None:intergenic |
| ATGCTACATCAAAAGATGAT+TGG | 0.430911 | 8_2:+18355524 | Msa1238330:CDS |
| TATCCTTCCACTTGGTCTGT+TGG | 0.434188 | 8_2:-18355432 | None:intergenic |
| ACAGCTCCTTGAGGTATAGT+TGG | 0.440110 | 8_2:-18356685 | None:intergenic |
| TGTATTACCTATGGGTGCAT+TGG | 0.442349 | 8_2:-18355707 | None:intergenic |
| TCAAACATAAGTTCCAAATC+AGG | 0.446282 | 8_2:-18354432 | None:intergenic |
| GGTTACAAGAAATCAAGCTT+AGG | 0.447993 | 8_2:+18355681 | Msa1238330:CDS |
| TTTGACTATTAAGATTTGTT+GGG | 0.449665 | 8_2:-18354185 | None:intergenic |
| AAGAGATGTGTTCACTTTGT+GGG | 0.454524 | 8_2:+18354371 | Msa1238330:CDS |
| TGGTACACAAAGGAAATTCA+TGG | 0.455426 | 8_2:+18356744 | Msa1238330:CDS |
| ACAATGGCATGTGATGTAAT+TGG | 0.458295 | 8_2:+18356724 | Msa1238330:CDS |
| TGATTTCTTGTAACCTTGAG+TGG | 0.459596 | 8_2:-18355673 | None:intergenic |
| GAAATTCATGGAGGAGTCAA+TGG | 0.462936 | 8_2:+18356756 | Msa1238330:CDS |
| ACCCTTAAAGAGATAAAAGA+AGG | 0.466174 | 8_2:+18355406 | Msa1238330:CDS |
| AAAAGCTAATTCAACAAGAC+AGG | 0.470223 | 8_2:+18356858 | Msa1238330:CDS |
| TATTAAAGTACATAATTTCA+GGG | 0.473858 | 8_2:+18354025 | Msa1238330:intron |
| ATTGGCCAATAGTGTTGTAA+TGG | 0.475825 | 8_2:-18356178 | None:intergenic |
| ATGTAGCATTGCATTTCAAA+AGG | 0.477688 | 8_2:-18355510 | None:intergenic |
| AGGTATAAGATTTATATAGA+AGG | 0.477784 | 8_2:+18356055 | Msa1238330:intron |
| TCCAAATCAGGCAACTTGCC+AGG | 0.481914 | 8_2:-18354420 | None:intergenic |
| TTTAAGGTTGTGATTGTGGA+TGG | 0.495644 | 8_2:+18354309 | Msa1238330:CDS |
| AAATGTACGTGGAAAAGTAT+AGG | 0.500269 | 8_2:+18354334 | Msa1238330:CDS |
| GTACCTTATGCTTATTGGAA+GGG | 0.503766 | 8_2:+18355457 | Msa1238330:CDS |
| TACCTTATGCTTATTGGAAG+GGG | 0.503930 | 8_2:+18355458 | Msa1238330:CDS |
| TTTATATAGAAGGATGGGCT+TGG | 0.509845 | 8_2:+18356065 | Msa1238330:CDS |
| TGCTTATGTGGATGGATGAA+AGG | 0.511051 | 8_2:-18354068 | None:intergenic |
| AGATAGGCCTGTTATTCATA+AGG | 0.511562 | 8_2:+18354461 | Msa1238330:CDS |
| AGGGATCACAAGGGAAATGT+TGG | 0.512515 | 8_2:+18354263 | Msa1238330:CDS |
| TTCCCCTTCCAATAAGCATA+AGG | 0.515441 | 8_2:-18355460 | None:intergenic |
| GAGATGTTTCTTCACCAAGA+AGG | 0.520532 | 8_2:+18352781 | Msa1238330:CDS |
| ATAAGATTTATATAGAAGGA+TGG | 0.521449 | 8_2:+18356059 | Msa1238330:CDS |
| ATCCCCAAAAGGACCAATCT+GGG | 0.523594 | 8_2:-18354563 | None:intergenic |
| GTTACAAGAAATCAAGCTTA+GGG | 0.524559 | 8_2:+18355682 | Msa1238330:CDS |
| TCTCCATTGGTGCATCTAAG+TGG | 0.528007 | 8_2:-18354114 | None:intergenic |
| AGTACCTTATGCTTATTGGA+AGG | 0.533255 | 8_2:+18355456 | Msa1238330:CDS |
| TTGTTCAGATCAATGGAGCT+TGG | 0.533796 | 8_2:+18354530 | Msa1238330:CDS |
| TATGAAAGAGAGTGTTGGAA+GGG | 0.535251 | 8_2:-18352623 | None:intergenic |
| TAAGATTTATATAGAAGGAT+GGG | 0.538690 | 8_2:+18356060 | Msa1238330:CDS |
| GATCACAAGGGAAATGTTGG+AGG | 0.546961 | 8_2:+18354266 | Msa1238330:CDS |
| TAGTACTTACCATCCCCAAA+AGG | 0.554356 | 8_2:-18354574 | None:intergenic |
| ATATGAAAGAGAGTGTTGGA+AGG | 0.556828 | 8_2:-18352624 | None:intergenic |
| GTATATATGAAAGAGAGTGT+TGG | 0.559027 | 8_2:-18352628 | None:intergenic |
| CTCTAACTCTTGCTATATGA+GGG | 0.566329 | 8_2:-18352679 | None:intergenic |
| GTTAAAGGATCATATGGAGG+AGG | 0.572145 | 8_2:-18356814 | None:intergenic |
| AACTATACCTCAAGGAGCTG+TGG | 0.573210 | 8_2:+18356687 | Msa1238330:CDS |
| TTTCCACTTAGATGCACCAA+TGG | 0.577671 | 8_2:+18354111 | Msa1238330:CDS |
| AGCTAGCAAATTCATACAAG+AGG | 0.580152 | 8_2:+18356588 | Msa1238330:CDS |
| CAGAGACAAATATAAAGCCA+TGG | 0.587033 | 8_2:+18355377 | Msa1238330:CDS |
| GGGTCTAACATATAATGTCA+TGG | 0.588604 | 8_2:-18356122 | None:intergenic |
| GAAGGGAGAGAGAATGAACA+TGG | 0.595451 | 8_2:-18352606 | None:intergenic |
| ATAGCTACCACCACTGTGGT+TGG | 0.596622 | 8_2:+18352815 | Msa1238330:CDS |
| TATGGAGGAGGAATAGTGCA+TGG | 0.604369 | 8_2:-18356802 | None:intergenic |
| AGAGATGTGTTCACTTTGTG+GGG | 0.604516 | 8_2:+18354372 | Msa1238330:CDS |
| ACCCTAATGTTGCTGCAACT+AGG | 0.605182 | 8_2:+18355482 | Msa1238330:CDS |
| TAGGGAACCAATGCACCCAT+AGG | 0.605662 | 8_2:+18355700 | Msa1238330:CDS |
| CATGGAGGAGTCAATGGTGA+AGG | 0.605682 | 8_2:+18356762 | Msa1238330:CDS |
| TTCAAACCAACTATACCTCA+AGG | 0.608229 | 8_2:+18356679 | Msa1238330:CDS |
| TATCTTAAACTCTTCTGGGG+TGG | 0.610291 | 8_2:+18352743 | Msa1238330:CDS |
| TCCATGAAGATTTAAAACCA+TGG | 0.611046 | 8_2:+18354232 | Msa1238330:CDS |
| CAATATCTAAACAAAGGAGG+TGG | 0.616345 | 8_2:-18354510 | None:intergenic |
| AAGGGAACCAACAGACCAAG+TGG | 0.618221 | 8_2:+18355425 | Msa1238330:CDS |
| TGGATCCATCTAAAGTATGA+GGG | 0.622254 | 8_2:-18354213 | None:intergenic |
| AAAGTTAAAGGATCATATGG+AGG | 0.624764 | 8_2:-18356817 | None:intergenic |
| TCTGAACAATATCTAAACAA+AGG | 0.632316 | 8_2:-18354516 | None:intergenic |
| CCCTTAAAGAGATAAAAGAA+GGG | 0.639732 | 8_2:+18355407 | Msa1238330:CDS |
| TGGGATAAAGAATCCACTCA+AGG | 0.640081 | 8_2:+18355660 | Msa1238330:CDS |
| GTGATGTAATTGGTACACAA+AGG | 0.644655 | 8_2:+18356734 | Msa1238330:CDS |
| GAACAATATCTAAACAAAGG+AGG | 0.645713 | 8_2:-18354513 | None:intergenic |
| GTGCATGGATTTAAATCACT+AGG | 0.647032 | 8_2:-18356787 | None:intergenic |
| GAACCAACAGACCAAGTGGA+AGG | 0.647617 | 8_2:+18355429 | Msa1238330:CDS |
| CAAAACTCCACAGCTCCTTG+AGG | 0.648484 | 8_2:-18356694 | None:intergenic |
| ATCACAAGGGAAATGTTGGA+GGG | 0.653730 | 8_2:+18354267 | Msa1238330:CDS |
| AGGTACTCTATCCTTCCACT+TGG | 0.660422 | 8_2:-18355440 | None:intergenic |
| AAACAAACCAACCACAGTGG+TGG | 0.666348 | 8_2:-18352822 | None:intergenic |
| ATTCAACTCAAACATGAACA+AGG | 0.670929 | 8_2:+18352709 | Msa1238330:exon |
| ACATATCTTAAACTCTTCTG+GGG | 0.672048 | 8_2:+18352740 | Msa1238330:CDS |
| TACAATAGCTACCACCACTG+TGG | 0.741658 | 8_2:+18352811 | Msa1238330:CDS |
| TACACAAAGGAAATTCATGG+AGG | 0.749892 | 8_2:+18356747 | Msa1238330:CDS |
| ACAAAACAAACCAACCACAG+TGG | 0.751123 | 8_2:-18352825 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAGTGTTGTTATTTTAAAA+GGG | - | chr8_2:18353571-18353590 | None:intergenic | 15.0% |
| !!! | TTTAGTGTTGTTATTTTAAA+AGG | - | chr8_2:18353572-18353591 | None:intergenic | 15.0% |
| !! | TTATTAAAGTACATAATTTC+AGG | + | chr8_2:18354024-18354043 | Msa1238330:intron | 15.0% |
| !! | TATTAAAGTACATAATTTCA+GGG | + | chr8_2:18354025-18354044 | Msa1238330:intron | 15.0% |
| !!! | AAAATATTTACGATGTTTTT+CGG | - | chr8_2:18354654-18354673 | None:intergenic | 15.0% |
| !! | AAATATTACCATTACATAAA+TGG | - | chr8_2:18355135-18355154 | None:intergenic | 15.0% |
| !!! | ATTTTTTTGACAAAAAGTAA+AGG | + | chr8_2:18355165-18355184 | Msa1238330:intron | 15.0% |
| !! | AAAAAAATACTTGTATGTAT+AGG | - | chr8_2:18355558-18355577 | None:intergenic | 15.0% |
| !!! | TGATTTTCTTAAATTATTAG+CGG | - | chr8_2:18356380-18356399 | None:intergenic | 15.0% |
| !! | TTAGTATGAAAAATTAGCAA+TGG | + | chr8_2:18352939-18352958 | Msa1238330:intron | 20.0% |
| !!! | AATTTGTCTCTAATTTTGTT+AGG | + | chr8_2:18352972-18352991 | Msa1238330:intron | 20.0% |
| !!! | GCTCAAATAAGTATTTTTTA+AGG | + | chr8_2:18353151-18353170 | Msa1238330:intron | 20.0% |
| !!! | TGTTGTTATTTTATTGATCA+AGG | - | chr8_2:18353729-18353748 | None:intergenic | 20.0% |
| !! | AAAGTAATTGGATCAAATTT+GGG | - | chr8_2:18353975-18353994 | None:intergenic | 20.0% |
| !!! | TTTGACTATTAAGATTTGTT+GGG | - | chr8_2:18354188-18354207 | None:intergenic | 20.0% |
| !!! | AAAAAGAACAGCAAATTTTA+AGG | + | chr8_2:18354293-18354312 | Msa1238330:CDS | 20.0% |
| !!! | ACTCTCAAATTATTTTATGT+TGG | + | chr8_2:18354859-18354878 | Msa1238330:intron | 20.0% |
| !! | TTGTATGATATAACTATTTG+TGG | - | chr8_2:18355001-18355020 | None:intergenic | 20.0% |
| !! | TGATATTCTTTACATAAAAC+AGG | + | chr8_2:18355353-18355372 | Msa1238330:intron | 20.0% |
| !! | GATATTCTTTACATAAAACA+GGG | + | chr8_2:18355354-18355373 | Msa1238330:intron | 20.0% |
| !! | GGAATTAAAATAGTATGTTA+TGG | + | chr8_2:18355764-18355783 | Msa1238330:intron | 20.0% |
| !!! | AAATTGAAATTCCATTTTTC+CGG | - | chr8_2:18355899-18355918 | None:intergenic | 20.0% |
| !! | AGGTATAAGATTTATATAGA+AGG | + | chr8_2:18356055-18356074 | Msa1238330:intron | 20.0% |
| !! | ATAAGATTTATATAGAAGGA+TGG | + | chr8_2:18356059-18356078 | Msa1238330:CDS | 20.0% |
| !! | TAAGATTTATATAGAAGGAT+GGG | + | chr8_2:18356060-18356079 | Msa1238330:CDS | 20.0% |
| !! | ATGAAAAAGTCATAGAAATT+GGG | - | chr8_2:18356145-18356164 | None:intergenic | 20.0% |
| !! | CATTTACTATTATCTCTAAT+TGG | - | chr8_2:18356199-18356218 | None:intergenic | 20.0% |
| !! | TTCAGTGTAATTATATATGT+TGG | + | chr8_2:18356405-18356424 | Msa1238330:intron | 20.0% |
| !! | AAAAGTTCATGTAAAGTTAA+AGG | - | chr8_2:18356832-18356851 | None:intergenic | 20.0% |
| ! | AAACATATCTTAAACTCTTC+TGG | + | chr8_2:18352738-18352757 | Msa1238330:CDS | 25.0% |
| ! | AACATATCTTAAACTCTTCT+GGG | + | chr8_2:18352739-18352758 | Msa1238330:CDS | 25.0% |
| ! | AACATATAACACAACTAATG+AGG | - | chr8_2:18353090-18353109 | None:intergenic | 25.0% |
| ! | TTTATGTATTATCAACACCA+TGG | + | chr8_2:18353108-18353127 | Msa1238330:intron | 25.0% |
| ! | TTCAAAATTTCTTCAAGTCA+TGG | - | chr8_2:18353316-18353335 | None:intergenic | 25.0% |
| ! | CAATAAAAAGAACATGTGTT+GGG | - | chr8_2:18353630-18353649 | None:intergenic | 25.0% |
| ! | TCAATAAAAAGAACATGTGT+TGG | - | chr8_2:18353631-18353650 | None:intergenic | 25.0% |
| ! | CAATAAAAAGAACATGTGTT+GGG | - | chr8_2:18353630-18353649 | None:intergenic | 25.0% |
| ! | TCAATAAAAAGAACATGTGT+TGG | - | chr8_2:18353631-18353650 | None:intergenic | 25.0% |
| ! | ATATGTTGTGACATAATTCT+AGG | + | chr8_2:18353948-18353967 | Msa1238330:intron | 25.0% |
| ! | CAAAGTAATTGGATCAAATT+TGG | - | chr8_2:18353976-18353995 | None:intergenic | 25.0% |
| ! | TAGTTTCTTGTCAAAGTAAT+TGG | - | chr8_2:18353987-18354006 | None:intergenic | 25.0% |
| ! | GTTTGACTATTAAGATTTGT+TGG | - | chr8_2:18354189-18354208 | None:intergenic | 25.0% |
| !!! | AAATTTTAAGGTTGTGATTG+TGG | + | chr8_2:18354305-18354324 | Msa1238330:CDS | 25.0% |
| ! | TTATGTTTGATTGTGAAGAT+AGG | + | chr8_2:18354445-18354464 | Msa1238330:CDS | 25.0% |
| !!! | AAATTAGCCTTATGAATAAC+AGG | - | chr8_2:18354471-18354490 | None:intergenic | 25.0% |
| !! | ATTCATAAGGCTAATTTTCA+AGG | + | chr8_2:18354474-18354493 | Msa1238330:CDS | 25.0% |
| ! | TCTGAACAATATCTAAACAA+AGG | - | chr8_2:18354519-18354538 | None:intergenic | 25.0% |
| ! | TTAGATATTGTTCAGATCAA+TGG | + | chr8_2:18354523-18354542 | Msa1238330:CDS | 25.0% |
| ! | ATCTCATTCTACAAATAGAA+AGG | - | chr8_2:18354618-18354637 | None:intergenic | 25.0% |
| !!! | GGTTTTTAAAAATATCAAGG+AGG | - | chr8_2:18354728-18354747 | None:intergenic | 25.0% |
| !!! | TGCGGTTTTTAAAAATATCA+AGG | - | chr8_2:18354731-18354750 | None:intergenic | 25.0% |
| ! | TCAAAGAACTGAAACAAAAA+CGG | - | chr8_2:18354766-18354785 | None:intergenic | 25.0% |
| !!! | CTCAAATTATTTTATGTTGG+AGG | + | chr8_2:18354862-18354881 | Msa1238330:intron | 25.0% |
| !!! | ACGTTTTTTGCTTATAAGTT+GGG | + | chr8_2:18354903-18354922 | Msa1238330:intron | 25.0% |
| !! | TTTTTGACAAAAAGTAAAGG+TGG | + | chr8_2:18355168-18355187 | Msa1238330:intron | 25.0% |
| ! | TGTATATATGTTTGTGTCAT+AGG | + | chr8_2:18355635-18355654 | Msa1238330:intron | 25.0% |
| ! | GTGATATTTGTATTACCTAT+GGG | - | chr8_2:18355718-18355737 | None:intergenic | 25.0% |
| ! | AGTGATATTTGTATTACCTA+TGG | - | chr8_2:18355719-18355738 | None:intergenic | 25.0% |
| ! | AATAGTATGTTATGGTAAAG+TGG | + | chr8_2:18355772-18355791 | Msa1238330:intron | 25.0% |
| !!! | AAGTTGATTTTTGAGTTTGT+CGG | + | chr8_2:18355827-18355846 | Msa1238330:intron | 25.0% |
| !! | TAAACTCAATTCAAGTTTGT+TGG | + | chr8_2:18355858-18355877 | Msa1238330:intron | 25.0% |
| ! | TTGGAATATAAAATGTGTTC+CGG | + | chr8_2:18355877-18355896 | Msa1238330:intron | 25.0% |
| ! | CAACAATGCACATAAAATTA+AGG | - | chr8_2:18356031-18356050 | None:intergenic | 25.0% |
| !! | CTTAATTTTATGTGCATTGT+TGG | + | chr8_2:18356029-18356048 | Msa1238330:intron | 25.0% |
| ! | AGTTAGTGAGAAATACATTA+TGG | + | chr8_2:18356090-18356109 | Msa1238330:CDS | 25.0% |
| ! | GATGAAAAAGTCATAGAAAT+TGG | - | chr8_2:18356146-18356165 | None:intergenic | 25.0% |
| !!! | AATAAAGTCATGTTTGTTGT+TGG | - | chr8_2:18356285-18356304 | None:intergenic | 25.0% |
| !! | AACATGACTTTATTTGATTG+TGG | + | chr8_2:18356291-18356310 | Msa1238330:intron | 25.0% |
| !!! | TATATATGTTGGTGTCATAT+CGG | + | chr8_2:18356416-18356435 | Msa1238330:intron | 25.0% |
| ! | ATTCCCTAAAATTACATATC+AGG | + | chr8_2:18356546-18356565 | Msa1238330:intron | 25.0% |
| ! | TGTAAAGTTAAAGGATCATA+TGG | - | chr8_2:18356823-18356842 | None:intergenic | 25.0% |
| ! | AAATTTGGGAAGATGAATAT+TGG | + | chr8_2:18356884-18356903 | Msa1238330:CDS | 25.0% |
| !! | TATTGGCTGAATAAAAAGAA+TGG | + | chr8_2:18356901-18356920 | Msa1238330:CDS | 25.0% |
| !!! | GTTTTAATTAGTCGACGTTT+GGG | - | chr8_2:18352555-18352574 | None:intergenic | 30.0% |
| !!! | AGTTTTAATTAGTCGACGTT+TGG | - | chr8_2:18352556-18352575 | None:intergenic | 30.0% |
| ! | GTATATATGAAAGAGAGTGT+TGG | - | chr8_2:18352631-18352650 | None:intergenic | 30.0% |
| ATTCAACTCAAACATGAACA+AGG | + | chr8_2:18352709-18352728 | Msa1238330:exon | 30.0% | |
| ACATATCTTAAACTCTTCTG+GGG | + | chr8_2:18352740-18352759 | Msa1238330:CDS | 30.0% | |
| ! | TATTGTAACTTTAGCCTTCT+TGG | - | chr8_2:18352798-18352817 | None:intergenic | 30.0% |
| TAAGTCGTAAATTGAACCAA+AGG | - | chr8_2:18353195-18353214 | None:intergenic | 30.0% | |
| GAGTGATTCAAAATTCTACT+CGG | - | chr8_2:18353248-18353267 | None:intergenic | 30.0% | |
| AGTCTCTTTCACCTAAATAT+CGG | + | chr8_2:18353269-18353288 | Msa1238330:intron | 30.0% | |
| ACAACACTAAACTAAGTGTT+TGG | + | chr8_2:18353581-18353600 | Msa1238330:intron | 30.0% | |
| ACAACACTAAACTAAGTGTT+TGG | + | chr8_2:18353581-18353600 | Msa1238330:intron | 30.0% | |
| TATGACATGATCATTGATCA+AGG | - | chr8_2:18353891-18353910 | None:intergenic | 30.0% | |
| TAATGCTAATAGTTACAACG+TGG | - | chr8_2:18353924-18353943 | None:intergenic | 30.0% | |
| !!! | TGGATGAAAGGTTTTGATTT+GGG | - | chr8_2:18354059-18354078 | None:intergenic | 30.0% |
| !!! | ATGGATGAAAGGTTTTGATT+TGG | - | chr8_2:18354060-18354079 | None:intergenic | 30.0% |
| ! | TTGTTGGGTTATGTTTTGTA+GGG | - | chr8_2:18354173-18354192 | None:intergenic | 30.0% |
| ! | TTTGTTGGGTTATGTTTTGT+AGG | - | chr8_2:18354174-18354193 | None:intergenic | 30.0% |
| ! | TCCATGAAGATTTAAAACCA+TGG | + | chr8_2:18354232-18354251 | Msa1238330:CDS | 30.0% |
| !!! | TCCATGGTTTTAAATCTTCA+TGG | - | chr8_2:18354236-18354255 | None:intergenic | 30.0% |
| TTAAAACCATGGAGAGAAAA+AGG | + | chr8_2:18354243-18354262 | Msa1238330:CDS | 30.0% | |
| TAAAACCATGGAGAGAAAAA+GGG | + | chr8_2:18354244-18354263 | Msa1238330:CDS | 30.0% | |
| ! | AAATGTACGTGGAAAAGTAT+AGG | + | chr8_2:18354334-18354353 | Msa1238330:CDS | 30.0% |
| TCAAACATAAGTTCCAAATC+AGG | - | chr8_2:18354435-18354454 | None:intergenic | 30.0% | |
| GAACAATATCTAAACAAAGG+AGG | - | chr8_2:18354516-18354535 | None:intergenic | 30.0% | |
| TTCTCAACTACATCGTAAAA+TGG | + | chr8_2:18354685-18354704 | Msa1238330:intron | 30.0% | |
| !! | GATATTTTTAAAAACCGCAC+CGG | + | chr8_2:18354732-18354751 | Msa1238330:intron | 30.0% |
| !! | ATATTTTTAAAAACCGCACC+GGG | + | chr8_2:18354733-18354752 | Msa1238330:intron | 30.0% |
| TTTCAGTTCTTTGACTCATT+CGG | + | chr8_2:18354772-18354791 | Msa1238330:intron | 30.0% | |
| !!! | CACGTTTTTTGCTTATAAGT+TGG | + | chr8_2:18354902-18354921 | Msa1238330:intron | 30.0% |
| !!! | TTTTTTGCTTATAAGTTGGG+AGG | + | chr8_2:18354906-18354925 | Msa1238330:intron | 30.0% |
| !! | TTTTTGCTTATAAGTTGGGA+GGG | + | chr8_2:18354907-18354926 | Msa1238330:intron | 30.0% |
| ! | ACAACATGGCATGATTTTAT+TGG | - | chr8_2:18354948-18354967 | None:intergenic | 30.0% |
| AACCTAATAAAACGACAACA+TGG | - | chr8_2:18354962-18354981 | None:intergenic | 30.0% | |
| !! | ACTTGCACACTATTTTAAAG+AGG | - | chr8_2:18355030-18355049 | None:intergenic | 30.0% |
| TTAAAATAGTGTGCAAGTGA+TGG | + | chr8_2:18355032-18355051 | Msa1238330:intron | 30.0% | |
| AATTTGAAAAGATAAGAGCG+TGG | - | chr8_2:18355098-18355117 | None:intergenic | 30.0% | |
| !!! | TCTTTAAGGGTATTTTTCCA+TGG | - | chr8_2:18355397-18355416 | None:intergenic | 30.0% |
| ACCCTTAAAGAGATAAAAGA+AGG | + | chr8_2:18355406-18355425 | Msa1238330:CDS | 30.0% | |
| ! | CCCTTCTTTTATCTCTTTAA+GGG | - | chr8_2:18355410-18355429 | None:intergenic | 30.0% |
| CCCTTAAAGAGATAAAAGAA+GGG | + | chr8_2:18355407-18355426 | Msa1238330:CDS | 30.0% | |
| ! | TCCCTTCTTTTATCTCTTTA+AGG | - | chr8_2:18355411-18355430 | None:intergenic | 30.0% |
| ! | ATAGAGTACCTTATGCTTAT+TGG | + | chr8_2:18355452-18355471 | Msa1238330:CDS | 30.0% |
| ATGTAGCATTGCATTTCAAA+AGG | - | chr8_2:18355513-18355532 | None:intergenic | 30.0% | |
| ATGCTACATCAAAAGATGAT+TGG | + | chr8_2:18355524-18355543 | Msa1238330:CDS | 30.0% | |
| TTCCTTGCAATTCACATAAA+AGG | + | chr8_2:18355599-18355618 | Msa1238330:intron | 30.0% | |
| ! | TTCCTTTTATGTGAATTGCA+AGG | - | chr8_2:18355604-18355623 | None:intergenic | 30.0% |
| GTTACAAGAAATCAAGCTTA+GGG | + | chr8_2:18355682-18355701 | Msa1238330:CDS | 30.0% | |
| ! | CAAGAGAACTATCAAGTTTT+TGG | + | chr8_2:18355743-18355762 | Msa1238330:intron | 30.0% |
| TAAAATGTGTTCCGGAAAAA+TGG | + | chr8_2:18355885-18355904 | Msa1238330:intron | 30.0% | |
| !!! | TTCTATGACTTTTTCATCAG+AGG | + | chr8_2:18356148-18356167 | Msa1238330:CDS | 30.0% |
| !! | TCTTAAATTTGCTGTGGATT+GGG | + | chr8_2:18356225-18356244 | Msa1238330:intron | 30.0% |
| ACGAATATGGACATAAATAC+TGG | + | chr8_2:18356332-18356351 | Msa1238330:intron | 30.0% | |
| TCTTAAATTATTAGCGGTGT+CGG | - | chr8_2:18356374-18356393 | None:intergenic | 30.0% | |
| ! | GTGCCTGATATGTAATTTTA+GGG | - | chr8_2:18356552-18356571 | None:intergenic | 30.0% |
| ! | TGTGCCTGATATGTAATTTT+AGG | - | chr8_2:18356553-18356572 | None:intergenic | 30.0% |
| CATACAAGAGGATTTAGATA+TGG | + | chr8_2:18356600-18356619 | Msa1238330:CDS | 30.0% | |
| AAAGTTAAAGGATCATATGG+AGG | - | chr8_2:18356820-18356839 | None:intergenic | 30.0% | |
| AAAAGCTAATTCAACAAGAC+AGG | + | chr8_2:18356858-18356877 | Msa1238330:CDS | 30.0% | |
| AACAAGACAGGTAGAAATTT+GGG | + | chr8_2:18356870-18356889 | Msa1238330:CDS | 30.0% | |
| !! | TATGAAAGAGAGTGTTGGAA+GGG | - | chr8_2:18352626-18352645 | None:intergenic | 35.0% |
| !! | ATATGAAAGAGAGTGTTGGA+AGG | - | chr8_2:18352627-18352646 | None:intergenic | 35.0% |
| ! | CTCTAACTCTTGCTATATGA+GGG | - | chr8_2:18352682-18352701 | None:intergenic | 35.0% |
| ! | TCTCTAACTCTTGCTATATG+AGG | - | chr8_2:18352683-18352702 | None:intergenic | 35.0% |
| TGCTGCAAAATCACAAAAAG+TGG | - | chr8_2:18352858-18352877 | None:intergenic | 35.0% | |
| ! | CTTTTTGTGATTTTGCAGCA+TGG | + | chr8_2:18352858-18352877 | Msa1238330:CDS | 35.0% |
| ACCATGGTAGAAAAATCATG+TGG | + | chr8_2:18353124-18353143 | Msa1238330:intron | 35.0% | |
| ! | ACCACATGATTTTTCTACCA+TGG | - | chr8_2:18353128-18353147 | None:intergenic | 35.0% |
| !! | AATTGAACCAAAGGTGTTCT+TGG | - | chr8_2:18353186-18353205 | None:intergenic | 35.0% |
| GTCTTAACTCTCCGATATTT+AGG | - | chr8_2:18353283-18353302 | None:intergenic | 35.0% | |
| AGCCTCTTGTGTAAAAAACA+GGG | + | chr8_2:18353466-18353485 | Msa1238330:intron | 35.0% | |
| !!! | TACCCTGTTTTTTACACAAG+AGG | - | chr8_2:18353471-18353490 | None:intergenic | 35.0% |
| CTTGTGTAAAAAACAGGGTA+AGG | + | chr8_2:18353471-18353490 | Msa1238330:intron | 35.0% | |
| !!! | GTTATTTTAAAAGGGCAACC+CGG | - | chr8_2:18353563-18353582 | None:intergenic | 35.0% |
| !!! | TGAAAGGTTTTGATTTGGGA+TGG | - | chr8_2:18354055-18354074 | None:intergenic | 35.0% |
| ! | CTTTGTGGTTTTTGCTTATG+TGG | - | chr8_2:18354083-18354102 | None:intergenic | 35.0% |
| GTGGAAATTCTTGTTCTTTG+TGG | - | chr8_2:18354098-18354117 | None:intergenic | 35.0% | |
| !!! | TGTCTCAGTTTTTTCTCCAT+TGG | - | chr8_2:18354130-18354149 | None:intergenic | 35.0% |
| ! | TGGATCCATCTAAAGTATGA+GGG | - | chr8_2:18354216-18354235 | None:intergenic | 35.0% |
| ! | ATGGATCCATCTAAAGTATG+AGG | - | chr8_2:18354217-18354236 | None:intergenic | 35.0% |
| ! | TTTAAGGTTGTGATTGTGGA+TGG | + | chr8_2:18354309-18354328 | Msa1238330:CDS | 35.0% |
| AAGAGATGTGTTCACTTTGT+GGG | + | chr8_2:18354371-18354390 | Msa1238330:CDS | 35.0% | |
| !! | GGGGTATTTTGCAATTATTG+AGG | + | chr8_2:18354391-18354410 | Msa1238330:CDS | 35.0% |
| ! | CAATTATTGAGGTTGTTTCC+TGG | + | chr8_2:18354402-18354421 | Msa1238330:CDS | 35.0% |
| AGATAGGCCTGTTATTCATA+AGG | + | chr8_2:18354461-18354480 | Msa1238330:CDS | 35.0% | |
| CAATATCTAAACAAAGGAGG+TGG | - | chr8_2:18354513-18354532 | None:intergenic | 35.0% | |
| ! | AACAAAAACGGAGTTTTTCC+CGG | - | chr8_2:18354754-18354773 | None:intergenic | 35.0% |
| !! | TTTTATGTTGGAGGTGCAAA+AGG | + | chr8_2:18354871-18354890 | Msa1238330:intron | 35.0% |
| !!! | TGCCATGTTGTCGTTTTATT+AGG | + | chr8_2:18354957-18354976 | Msa1238330:intron | 35.0% |
| GTAGCTAGCCATTTATGTAA+TGG | + | chr8_2:18355124-18355143 | Msa1238330:intron | 35.0% | |
| CAGAGACAAATATAAAGCCA+TGG | + | chr8_2:18355377-18355396 | Msa1238330:CDS | 35.0% | |
| AGTACCTTATGCTTATTGGA+AGG | + | chr8_2:18355456-18355475 | Msa1238330:CDS | 35.0% | |
| GTACCTTATGCTTATTGGAA+GGG | + | chr8_2:18355457-18355476 | Msa1238330:CDS | 35.0% | |
| TACCTTATGCTTATTGGAAG+GGG | + | chr8_2:18355458-18355477 | Msa1238330:CDS | 35.0% | |
| ATATGTTTGTGTCATAGGAC+TGG | + | chr8_2:18355640-18355659 | Msa1238330:intron | 35.0% | |
| TATGTTTGTGTCATAGGACT+GGG | + | chr8_2:18355641-18355660 | Msa1238330:intron | 35.0% | |
| TGATTTCTTGTAACCTTGAG+TGG | - | chr8_2:18355676-18355695 | None:intergenic | 35.0% | |
| GGTTACAAGAAATCAAGCTT+AGG | + | chr8_2:18355681-18355700 | Msa1238330:CDS | 35.0% | |
| TTTATGTGCATTGTTGGAAC+AGG | + | chr8_2:18356035-18356054 | Msa1238330:intron | 35.0% | |
| ! | TTTATATAGAAGGATGGGCT+TGG | + | chr8_2:18356065-18356084 | Msa1238330:CDS | 35.0% |
| GGGTCTAACATATAATGTCA+TGG | - | chr8_2:18356125-18356144 | None:intergenic | 35.0% | |
| TGGATCCATTACAACACTAT+TGG | + | chr8_2:18356173-18356192 | Msa1238330:CDS | 35.0% | |
| ATTGGCCAATAGTGTTGTAA+TGG | - | chr8_2:18356181-18356200 | None:intergenic | 35.0% | |
| !! | CACTTCTCTTAAATTTGCTG+TGG | + | chr8_2:18356219-18356238 | Msa1238330:intron | 35.0% |
| !! | CTCTTAAATTTGCTGTGGAT+TGG | + | chr8_2:18356224-18356243 | Msa1238330:intron | 35.0% |
| !! | CTTAAATTTGCTGTGGATTG+GGG | + | chr8_2:18356226-18356245 | Msa1238330:intron | 35.0% |
| AGCTAGCAAATTCATACAAG+AGG | + | chr8_2:18356588-18356607 | Msa1238330:CDS | 35.0% | |
| TTCAAACCAACTATACCTCA+AGG | + | chr8_2:18356679-18356698 | Msa1238330:CDS | 35.0% | |
| ACAATGGCATGTGATGTAAT+TGG | + | chr8_2:18356724-18356743 | Msa1238330:CDS | 35.0% | |
| GTGATGTAATTGGTACACAA+AGG | + | chr8_2:18356734-18356753 | Msa1238330:CDS | 35.0% | |
| TGGTACACAAAGGAAATTCA+TGG | + | chr8_2:18356744-18356763 | Msa1238330:CDS | 35.0% | |
| TACACAAAGGAAATTCATGG+AGG | + | chr8_2:18356747-18356766 | Msa1238330:CDS | 35.0% | |
| GTGCATGGATTTAAATCACT+AGG | - | chr8_2:18356790-18356809 | None:intergenic | 35.0% | |
| CAACAAGACAGGTAGAAATT+TGG | + | chr8_2:18356869-18356888 | Msa1238330:CDS | 35.0% | |
| ! | TATCTTAAACTCTTCTGGGG+TGG | + | chr8_2:18352743-18352762 | Msa1238330:CDS | 40.0% |
| GAGATGTTTCTTCACCAAGA+AGG | + | chr8_2:18352781-18352800 | Msa1238330:CDS | 40.0% | |
| ACAAAACAAACCAACCACAG+TGG | - | chr8_2:18352828-18352847 | None:intergenic | 40.0% | |
| CAGCCTCTTGTGTAAAAAAC+AGG | + | chr8_2:18353465-18353484 | Msa1238330:intron | 40.0% | |
| CGTACAATACACCAAATGGT+GGG | + | chr8_2:18353497-18353516 | Msa1238330:intron | 40.0% | |
| GGATGTTGAAGCATAGGATT+AGG | - | chr8_2:18353609-18353628 | None:intergenic | 40.0% | |
| GGATGTTGAAGCATAGGATT+AGG | - | chr8_2:18353609-18353628 | None:intergenic | 40.0% | |
| TGCTTATGTGGATGGATGAA+AGG | - | chr8_2:18354071-18354090 | None:intergenic | 40.0% | |
| ! | GTGGTTTTTGCTTATGTGGA+TGG | - | chr8_2:18354079-18354098 | None:intergenic | 40.0% |
| TTTCCACTTAGATGCACCAA+TGG | + | chr8_2:18354111-18354130 | Msa1238330:CDS | 40.0% | |
| ! | TGTTTTGTAGGGTAGTCTCT+TGG | - | chr8_2:18354162-18354181 | None:intergenic | 40.0% |
| CTTGTCCCTCATACTTTAGA+TGG | + | chr8_2:18354208-18354227 | Msa1238330:CDS | 40.0% | |
| GAGAGAAAAAGGGATCACAA+GGG | + | chr8_2:18354254-18354273 | Msa1238330:CDS | 40.0% | |
| ATCACAAGGGAAATGTTGGA+GGG | + | chr8_2:18354267-18354286 | Msa1238330:CDS | 40.0% | |
| TGTGGATGGAAAAATGTACG+TGG | + | chr8_2:18354323-18354342 | Msa1238330:CDS | 40.0% | |
| CAAGAGATGTGTTCACTTTG+TGG | + | chr8_2:18354370-18354389 | Msa1238330:CDS | 40.0% | |
| AGAGATGTGTTCACTTTGTG+GGG | + | chr8_2:18354372-18354391 | Msa1238330:CDS | 40.0% | |
| TTGTTCAGATCAATGGAGCT+TGG | + | chr8_2:18354530-18354549 | Msa1238330:CDS | 40.0% | |
| TGGATATTGTGTTCCCAGAT+TGG | + | chr8_2:18354550-18354569 | Msa1238330:CDS | 40.0% | |
| TAGTACTTACCATCCCCAAA+AGG | - | chr8_2:18354577-18354596 | None:intergenic | 40.0% | |
| GCTCTTGAGATGGGTAAATA+CGG | - | chr8_2:18354818-18354837 | None:intergenic | 40.0% | |
| AAATAGTGTGCAAGTGATGG+TGG | + | chr8_2:18355035-18355054 | Msa1238330:intron | 40.0% | |
| ! | AAAGATAAGAGCGTGGAACT+TGG | - | chr8_2:18355091-18355110 | None:intergenic | 40.0% |
| TTCCCCTTCCAATAAGCATA+AGG | - | chr8_2:18355463-18355482 | None:intergenic | 40.0% | |
| TCCTAGTTGCAGCAACATTA+GGG | - | chr8_2:18355486-18355505 | None:intergenic | 40.0% | |
| TTCCTAGTTGCAGCAACATT+AGG | - | chr8_2:18355487-18355506 | None:intergenic | 40.0% | |
| TGGGATAAAGAATCCACTCA+AGG | + | chr8_2:18355660-18355679 | Msa1238330:CDS | 40.0% | |
| TGTATTACCTATGGGTGCAT+TGG | - | chr8_2:18355710-18355729 | None:intergenic | 40.0% | |
| !!! | TGACTTTTTCATCAGAGGCA+TGG | + | chr8_2:18356153-18356172 | Msa1238330:CDS | 40.0% |
| GGGAAACAAACATGCTGATA+AGG | + | chr8_2:18356246-18356265 | Msa1238330:intron | 40.0% | |
| CTAGCTATGAAGCACGAATA+TGG | + | chr8_2:18356319-18356338 | Msa1238330:intron | 40.0% | |
| CATAAATACTGGACACGACA+CGG | + | chr8_2:18356343-18356362 | Msa1238330:intron | 40.0% | |
| ATCTAGCAAGCTATGAAGCA+CGG | - | chr8_2:18356475-18356494 | None:intergenic | 40.0% | |
| ACATATCAGGCACAAGCAAT+AGG | + | chr8_2:18356559-18356578 | Msa1238330:intron | 40.0% | |
| CATATCAGGCACAAGCAATA+GGG | + | chr8_2:18356560-18356579 | Msa1238330:intron | 40.0% | |
| ATATCAGGCACAAGCAATAG+GGG | + | chr8_2:18356561-18356580 | Msa1238330:intron | 40.0% | |
| ! | GGAGTTTTGCTCAGAAACAA+TGG | + | chr8_2:18356708-18356727 | Msa1238330:CDS | 40.0% |
| GAAATTCATGGAGGAGTCAA+TGG | + | chr8_2:18356756-18356775 | Msa1238330:CDS | 40.0% | |
| GTTAAAGGATCATATGGAGG+AGG | - | chr8_2:18356817-18356836 | None:intergenic | 40.0% | |
| GAAGGGAGAGAGAATGAACA+TGG | - | chr8_2:18352609-18352628 | None:intergenic | 45.0% | |
| TACAATAGCTACCACCACTG+TGG | + | chr8_2:18352811-18352830 | Msa1238330:CDS | 45.0% | |
| AAACAAACCAACCACAGTGG+TGG | - | chr8_2:18352825-18352844 | None:intergenic | 45.0% | |
| GAATCGACCAAGAACACCTT+TGG | + | chr8_2:18353176-18353195 | Msa1238330:intron | 45.0% | |
| CGGTCACATGACAACAAGAT+GGG | - | chr8_2:18353418-18353437 | None:intergenic | 45.0% | |
| TCGGTCACATGACAACAAGA+TGG | - | chr8_2:18353419-18353438 | None:intergenic | 45.0% | |
| ! | CTTGTTGTCATGTGACCGAA+AGG | + | chr8_2:18353420-18353439 | Msa1238330:intron | 45.0% |
| ! | TTACACAAGAGGCTGTTTCC+AGG | - | chr8_2:18353460-18353479 | None:intergenic | 45.0% |
| GCTGCGTACAATACACCAAA+TGG | + | chr8_2:18353493-18353512 | Msa1238330:intron | 45.0% | |
| GCGTACAATACACCAAATGG+TGG | + | chr8_2:18353496-18353515 | Msa1238330:intron | 45.0% | |
| GTGTTGGGATGTTGAAGCAT+AGG | - | chr8_2:18353615-18353634 | None:intergenic | 45.0% | |
| GTGTTGGGATGTTGAAGCAT+AGG | - | chr8_2:18353615-18353634 | None:intergenic | 45.0% | |
| TCTCCATTGGTGCATCTAAG+TGG | - | chr8_2:18354117-18354136 | None:intergenic | 45.0% | |
| ! | GTGATCCCTTTTTCTCTCCA+TGG | - | chr8_2:18354252-18354271 | None:intergenic | 45.0% |
| GGAGAGAAAAAGGGATCACA+AGG | + | chr8_2:18354253-18354272 | Msa1238330:CDS | 45.0% | |
| AGGGATCACAAGGGAAATGT+TGG | + | chr8_2:18354263-18354282 | Msa1238330:CDS | 45.0% | |
| GATCACAAGGGAAATGTTGG+AGG | + | chr8_2:18354266-18354285 | Msa1238330:CDS | 45.0% | |
| ! | AAAGGAGGTGGTGAAGCATT+TGG | - | chr8_2:18354501-18354520 | None:intergenic | 45.0% |
| !! | TGTTCCCAGATTGGTCCTTT+TGG | + | chr8_2:18354559-18354578 | Msa1238330:CDS | 45.0% |
| !! | GTTCCCAGATTGGTCCTTTT+GGG | + | chr8_2:18354560-18354579 | Msa1238330:CDS | 45.0% |
| !! | TTCCCAGATTGGTCCTTTTG+GGG | + | chr8_2:18354561-18354580 | Msa1238330:CDS | 45.0% |
| ATCCCCAAAAGGACCAATCT+GGG | - | chr8_2:18354566-18354585 | None:intergenic | 45.0% | |
| ! | TGCTTATAAGTTGGGAGGGA+TGG | + | chr8_2:18354911-18354930 | Msa1238330:intron | 45.0% |
| TATCCTTCCACTTGGTCTGT+TGG | - | chr8_2:18355435-18355454 | None:intergenic | 45.0% | |
| AGGTACTCTATCCTTCCACT+TGG | - | chr8_2:18355443-18355462 | None:intergenic | 45.0% | |
| ACCCTAATGTTGCTGCAACT+AGG | + | chr8_2:18355482-18355501 | Msa1238330:CDS | 45.0% | |
| ! | GGACACTCTTTGGATTAGAC+AGG | - | chr8_2:18356454-18356473 | None:intergenic | 45.0% |
| TATGAAGCACGGACACTCTT+TGG | - | chr8_2:18356464-18356483 | None:intergenic | 45.0% | |
| ACAGCTCCTTGAGGTATAGT+TGG | - | chr8_2:18356688-18356707 | None:intergenic | 45.0% | |
| AACTATACCTCAAGGAGCTG+TGG | + | chr8_2:18356687-18356706 | Msa1238330:CDS | 45.0% | |
| TATGGAGGAGGAATAGTGCA+TGG | - | chr8_2:18356805-18356824 | None:intergenic | 45.0% | |
| ATAGCTACCACCACTGTGGT+TGG | + | chr8_2:18352815-18352834 | Msa1238330:CDS | 50.0% | |
| GTCATGTGACCGAAAGGTCA+CGG | + | chr8_2:18353426-18353445 | Msa1238330:intron | 50.0% | |
| TCATGTGACCGAAAGGTCAC+GGG | + | chr8_2:18353427-18353446 | Msa1238330:intron | 50.0% | |
| GACTTGAACCCGTGACCTTT+CGG | - | chr8_2:18353438-18353457 | None:intergenic | 50.0% | |
| TCCTGGCAAGTTGCCTGATT+TGG | + | chr8_2:18354419-18354438 | Msa1238330:CDS | 50.0% | |
| TCCAAATCAGGCAACTTGCC+AGG | - | chr8_2:18354423-18354442 | None:intergenic | 50.0% | |
| CATCCCCAAAAGGACCAATC+TGG | - | chr8_2:18354567-18354586 | None:intergenic | 50.0% | |
| !! | CAGATTGGTCCTTTTGGGGA+TGG | + | chr8_2:18354565-18354584 | Msa1238330:CDS | 50.0% |
| ! | AAACGGAGTTTTTCCCGGTG+CGG | - | chr8_2:18354749-18354768 | None:intergenic | 50.0% |
| ! | TACCCATCTCAAGAGCATGC+TGG | + | chr8_2:18354822-18354841 | Msa1238330:intron | 50.0% |
| CTCCAGCATGCTCTTGAGAT+GGG | - | chr8_2:18354827-18354846 | None:intergenic | 50.0% | |
| AAGGGAACCAACAGACCAAG+TGG | + | chr8_2:18355425-18355444 | Msa1238330:CDS | 50.0% | |
| GAACCAACAGACCAAGTGGA+AGG | + | chr8_2:18355429-18355448 | Msa1238330:CDS | 50.0% | |
| TAGGGAACCAATGCACCCAT+AGG | + | chr8_2:18355700-18355719 | Msa1238330:CDS | 50.0% | |
| CAAAACTCCACAGCTCCTTG+AGG | - | chr8_2:18356697-18356716 | None:intergenic | 50.0% | |
| CATGGAGGAGTCAATGGTGA+AGG | + | chr8_2:18356762-18356781 | Msa1238330:CDS | 50.0% | |
| AAGGTCACGGGTTCAAGTCC+TGG | + | chr8_2:18353439-18353458 | Msa1238330:intron | 55.0% | |
| CTGAAGCTCCCGCATATGCA+GGG | - | chr8_2:18353536-18353555 | None:intergenic | 55.0% | |
| ACTGAAGCTCCCGCATATGC+AGG | - | chr8_2:18353537-18353556 | None:intergenic | 55.0% | |
| CCTCCAGCATGCTCTTGAGA+TGG | - | chr8_2:18354828-18354847 | None:intergenic | 55.0% | |
| ! | CCATCTCAAGAGCATGCTGG+AGG | + | chr8_2:18354825-18354844 | Msa1238330:intron | 55.0% |
| TCAGGCACAAGCAATAGGGG+AGG | + | chr8_2:18356564-18356583 | Msa1238330:intron | 55.0% | |
| ! | CAAATGGTGGGACCCCTTCC+CGG | + | chr8_2:18353509-18353528 | Msa1238330:intron | 60.0% |
| CATATGCAGGGTCCGGGAAG+GGG | - | chr8_2:18353524-18353543 | None:intergenic | 60.0% | |
| GCATATGCAGGGTCCGGGAA+GGG | - | chr8_2:18353525-18353544 | None:intergenic | 60.0% | |
| CTTCCCGGACCCTGCATATG+CGG | + | chr8_2:18353524-18353543 | Msa1238330:intron | 60.0% | |
| TTCCCGGACCCTGCATATGC+GGG | + | chr8_2:18353525-18353544 | Msa1238330:intron | 60.0% | |
| ATGCGGGAGCTTCAGTGCAC+CGG | + | chr8_2:18353541-18353560 | Msa1238330:intron | 60.0% | |
| CGGGAAGGGGTCCCACCATT+TGG | - | chr8_2:18353511-18353530 | None:intergenic | 65.0% | |
| CGCATATGCAGGGTCCGGGA+AGG | - | chr8_2:18353526-18353545 | None:intergenic | 65.0% | |
| CTCCCGCATATGCAGGGTCC+GGG | - | chr8_2:18353530-18353549 | None:intergenic | 65.0% | |
| GCTCCCGCATATGCAGGGTC+CGG | - | chr8_2:18353531-18353550 | None:intergenic | 65.0% | |
| TGCGGGAGCTTCAGTGCACC+GGG | + | chr8_2:18353542-18353561 | Msa1238330:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 18352550 | 18356930 | 18352550 | ID=Msa1238330;Name=Msa1238330 |
| chr8_2 | mRNA | 18352550 | 18356930 | 18352550 | ID=Msa1238330-mRNA-1;Parent=Msa1238330;Name=Msa1238330-mRNA-1;_AED=0.12;_eAED=0.12;_QI=172|0.8|0.66|1|0.8|0.66|6|0|493 |
| chr8_2 | exon | 18352550 | 18352886 | 18352550 | ID=Msa1238330-mRNA-1:exon:6904;Parent=Msa1238330-mRNA-1 |
| chr8_2 | exon | 18354033 | 18354586 | 18354033 | ID=Msa1238330-mRNA-1:exon:6905;Parent=Msa1238330-mRNA-1 |
| chr8_2 | exon | 18355375 | 18355567 | 18355375 | ID=Msa1238330-mRNA-1:exon:6906;Parent=Msa1238330-mRNA-1 |
| chr8_2 | exon | 18355657 | 18355721 | 18355657 | ID=Msa1238330-mRNA-1:exon:6907;Parent=Msa1238330-mRNA-1 |
| chr8_2 | exon | 18356057 | 18356211 | 18356057 | ID=Msa1238330-mRNA-1:exon:6908;Parent=Msa1238330-mRNA-1 |
| chr8_2 | exon | 18356581 | 18356930 | 18356581 | ID=Msa1238330-mRNA-1:exon:6909;Parent=Msa1238330-mRNA-1 |
| chr8_2 | five_prime_UTR | 18352550 | 18352721 | 18352550 | ID=Msa1238330-mRNA-1:five_prime_utr;Parent=Msa1238330-mRNA-1 |
| chr8_2 | CDS | 18352722 | 18352886 | 18352722 | ID=Msa1238330-mRNA-1:cds;Parent=Msa1238330-mRNA-1 |
| chr8_2 | CDS | 18354033 | 18354586 | 18354033 | ID=Msa1238330-mRNA-1:cds;Parent=Msa1238330-mRNA-1 |
| chr8_2 | CDS | 18355375 | 18355567 | 18355375 | ID=Msa1238330-mRNA-1:cds;Parent=Msa1238330-mRNA-1 |
| chr8_2 | CDS | 18355657 | 18355721 | 18355657 | ID=Msa1238330-mRNA-1:cds;Parent=Msa1238330-mRNA-1 |
| chr8_2 | CDS | 18356057 | 18356211 | 18356057 | ID=Msa1238330-mRNA-1:cds;Parent=Msa1238330-mRNA-1 |
| chr8_2 | CDS | 18356581 | 18356930 | 18356581 | ID=Msa1238330-mRNA-1:cds;Parent=Msa1238330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
