AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0321080


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0321080 MtrunA17_Chr2g0296671 96.845 634 10 2 1 634 1 624 0.0 1269
Msa0321080 MtrunA17_Chr5g0393731 63.387 620 212 7 6 621 9 617 0.0 826
Msa0321080 MtrunA17_Chr1g0207291 62.951 610 209 4 21 623 26 625 0.0 824
Msa0321080 MtrunA17_Chr8g0334591 58.085 637 241 6 1 624 1 624 0.0 780
Msa0321080 MtrunA17_Chr7g0244951 60.561 606 223 5 21 622 22 615 0.0 773
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0321080 AT1G30900.1 69.649 626 175 4 9 631 10 623 0.0 935
Msa0321080 AT4G20110.1 68.211 626 186 4 5 629 10 623 0.0 929
Msa0321080 AT4G20110.2 67.299 633 189 6 2 629 7 626 0.0 915
Msa0321080 AT2G34940.1 61.201 616 224 5 5 619 10 611 0.0 819
Msa0321080 AT2G14720.1 62.726 609 212 6 18 621 21 619 0.0 816
Msa0321080 AT2G14720.2 62.726 609 212 6 18 621 21 619 0.0 816
Msa0321080 AT2G14740.2 62.706 606 211 6 21 621 24 619 0.0 815
Msa0321080 AT2G14740.1 62.706 606 211 6 21 621 24 619 0.0 815
Msa0321080 AT3G52850.1 60.743 619 224 5 5 618 8 612 0.0 781
Msa0321080 AT2G30290.2 56.938 627 254 6 1 621 1 617 0.0 774
Msa0321080 AT2G30290.1 56.938 627 254 6 1 621 1 617 0.0 773

Find 160 sgRNAs with CRISPR-Local

Find 347 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAGCATGCCATACCTTTA+AGG 0.157221 2_4:+22130051 None:intergenic
GAAAGAAGTGGTTCAAAATT+TGG 0.164004 2_4:-22126778 Msa0321080:CDS
ACTCAAATCATCTGTGTTTC+TGG 0.177825 2_4:-22125896 Msa0321080:three_prime_UTR
ACAATATACCCTCCATAATT+TGG 0.203127 2_4:+22131235 None:intergenic
GGCTATATGTGCTGGATTTA+AGG 0.203205 2_4:-22128674 Msa0321080:CDS
AACTTTGGTATTCCAAATTA+TGG 0.212484 2_4:-22131247 Msa0321080:CDS
TCATATTCCACTCGATTATC+AGG 0.227038 2_4:+22129809 None:intergenic
GGAAGGAAGAGTATATTATA+AGG 0.258737 2_4:+22131452 None:intergenic
CACTGACTGCTTTCAACAAA+TGG 0.295544 2_4:+22129638 None:intergenic
TTATTTCTCAGGATACTTTC+CGG 0.306015 2_4:-22127888 Msa0321080:intron
AAGAAAGAAAACTGAAGATT+TGG 0.307561 2_4:+22127569 None:intergenic
TAAAACCAATGTTGGCAAAA+TGG 0.313343 2_4:+22129011 None:intergenic
CTGCTTTCAACAAATGGCTT+TGG 0.319275 2_4:+22129644 None:intergenic
AGAGTGTTATTTCGCCTTAA+AGG 0.323181 2_4:-22130065 Msa0321080:CDS
TTCACAGCTAAGGAAAATTC+AGG 0.329605 2_4:-22126087 Msa0321080:three_prime_UTR
TTCAGCATCTTTGCTTTCCT+CGG 0.331417 2_4:+22129961 None:intergenic
TAGATGTCAATATTATTCTA+TGG 0.338566 2_4:+22126003 None:intergenic
CACTGTCCAGTTGGATTTCA+CGG 0.347022 2_4:-22127153 Msa0321080:CDS
TCATTCTCCACATCAGCTTC+AGG 0.349453 2_4:+22129241 None:intergenic
ATAAAGGAATCCAAGGTAAA+TGG 0.350972 2_4:-22127180 Msa0321080:intron
AGAGTGGCCGTTCGTGGGTT+TGG 0.359998 2_4:-22129484 Msa0321080:CDS
TATTTCTCAGGATACTTTCC+GGG 0.364724 2_4:-22127887 Msa0321080:intron
TTGTTTAAAGAACATCTTGC+TGG 0.381896 2_4:+22127660 None:intergenic
ATCGAGTGGAATATGAGTTC+TGG 0.384999 2_4:-22129802 Msa0321080:CDS
TACTGAACACCTTTCACAAC+AGG 0.386947 2_4:+22127847 None:intergenic
TGTGAAAGGTGTTCAGTATA+GGG 0.388359 2_4:-22127842 Msa0321080:CDS
CTTCATAGCAGCTATGTTCA+AGG 0.389548 2_4:-22131349 Msa0321080:CDS
GAAGTTGTCATGAAATCATT+AGG 0.394627 2_4:-22129392 Msa0321080:intron
CATGGTTGTCAAGTCTTTGA+AGG 0.396498 2_4:-22131181 Msa0321080:CDS
TTGTGAAAGGTGTTCAGTAT+AGG 0.396509 2_4:-22127843 Msa0321080:CDS
TGATGAGTCACTGATAACTA+TGG 0.408160 2_4:-22129990 Msa0321080:CDS
GAAGTAACTAACCTCTATAC+TGG 0.412577 2_4:+22128980 None:intergenic
ATAGCAGTTGTTGTGGGAGC+TGG 0.417748 2_4:-22126733 Msa0321080:CDS
TTAAACAATGTCCAGTATAG+AGG 0.419117 2_4:-22128991 Msa0321080:intron
AAAGCAGGTGAGGAGGAGTT+TGG 0.419134 2_4:-22125863 Msa0321080:three_prime_UTR
TGGAAAGGTCATTGCCTTTG+TGG 0.430461 2_4:-22126758 Msa0321080:CDS
AATGAGTGTCTTGAAAGAAA+TGG 0.431987 2_4:-22128073 Msa0321080:CDS
CAAGGACTTTGTAATTGTCT+TGG 0.444299 2_4:+22131489 None:intergenic
GGAGAGAACATCTGTCTTGA+AGG 0.450883 2_4:-22128695 Msa0321080:CDS
CGTGGATGATACTCTTCAAC+GGG 0.454338 2_4:+22126148 None:intergenic
TACACATTGCCTTGTCGTAA+AGG 0.456099 2_4:+22126324 None:intergenic
AATTATGGAGGGTATATTGT+AGG 0.457688 2_4:-22131232 Msa0321080:CDS
CAACCATGAGAGCCTTTCTC+AGG 0.458707 2_4:+22131196 None:intergenic
GTTATTTCGCCTTAAAGGTA+TGG 0.459481 2_4:-22130060 Msa0321080:CDS
CCTTCAGCAAAATCCTTCTC+TGG 0.460323 2_4:+22129572 None:intergenic
CTTTAAACAATGGAGGTTGT+TGG 0.461286 2_4:-22127647 Msa0321080:CDS
GTTGTGGGAGCTGGTCTAGC+TGG 0.461908 2_4:-22126724 Msa0321080:CDS
TTAAGTCCATTTCACAGCTA+AGG 0.464932 2_4:-22126097 Msa0321080:three_prime_UTR
CGAACGAGAGTGGCCGTTCG+TGG 0.468066 2_4:-22129490 Msa0321080:CDS
TACTCTTCAACGGGATCCCT+TGG 0.469667 2_4:+22126157 None:intergenic
GTATGGCATGCTCAACTAGC+TGG 0.473128 2_4:-22130043 Msa0321080:CDS
TGGCCGTTCGTGGGTTTGGT+GGG 0.474667 2_4:-22129480 Msa0321080:CDS
GTGGCCGTTCGTGGGTTTGG+TGG 0.475737 2_4:-22129481 Msa0321080:CDS
CCGTCTCCGTGAAATCCAAC+TGG 0.478314 2_4:+22127147 None:intergenic
AAGGAACAAGATATGTGTAT+TGG 0.478819 2_4:-22126898 Msa0321080:intron
GAAGGAAGAGTATATTATAA+GGG 0.482746 2_4:+22131453 None:intergenic
GTATTAGTAGAGAAATCCTT+TGG 0.486574 2_4:-22129908 Msa0321080:CDS
TCAGCATCTTTGCTTTCCTC+GGG 0.488925 2_4:+22129962 None:intergenic
ATATAGTGTATGAGAATTTG+AGG 0.490116 2_4:-22129535 Msa0321080:CDS
GTGGTCATAGCAGTTGTTGT+GGG 0.493592 2_4:-22126739 Msa0321080:CDS
GATGGTGCTATAGGAAACTT+TGG 0.494854 2_4:-22131262 Msa0321080:CDS
GTCTTGAAGGCTATATGTGC+TGG 0.496137 2_4:-22128682 Msa0321080:CDS
GAACCTCAAGTCTGTTTAAG+TGG 0.497796 2_4:-22128643 Msa0321080:CDS
ACATTGTTTAAAACCAATGT+TGG 0.503033 2_4:+22129003 None:intergenic
TCACTTGTTTATCCTGAGAA+AGG 0.503095 2_4:-22131208 Msa0321080:CDS
TGCTAATGTAACTGCTTGCA+AGG 0.503266 2_4:-22128029 Msa0321080:intron
ACTATTGTTCTTCTTGATCG+TGG 0.505839 2_4:-22131124 Msa0321080:CDS
GATTTCTCTACTAATACTGA+TGG 0.506816 2_4:+22129914 None:intergenic
TGTTCTACAAGTATAGACTA+AGG 0.506946 2_4:-22126696 Msa0321080:CDS
TTACATGGACTCAGAGATCA+TGG 0.510252 2_4:-22126409 Msa0321080:CDS
GCAAAATCCTTCTCTGGATC+CGG 0.510988 2_4:+22129578 None:intergenic
CGATCAAGAAGAACAATAGT+AGG 0.511281 2_4:+22131127 None:intergenic
GCTGCAGCTGTAAGAACACT+TGG 0.511473 2_4:-22126963 Msa0321080:CDS
GGTGTTCAGTATAGGGGTGA+TGG 0.513495 2_4:-22127835 Msa0321080:CDS
AGACAAAATCTTCTAACAAA+GGG 0.518063 2_4:+22125838 None:intergenic
CATGTATTTGCAGAAAGAAG+TGG 0.520311 2_4:-22126790 Msa0321080:intron
TTTACTAAGAATAGATTGGA+GGG 0.522454 2_4:-22129846 Msa0321080:CDS
TATCCTGAGAAAGGCTCTCA+TGG 0.525339 2_4:-22131199 Msa0321080:CDS
CTCAACAATGAAACCTTGCA+TGG 0.531458 2_4:-22131395 Msa0321080:exon
GACAAAATTAAGAAATGTGT+TGG 0.536057 2_4:-22129268 Msa0321080:CDS
TTGAAAGAAATGGAGGATGC+TGG 0.537445 2_4:-22128063 Msa0321080:CDS
GGAAGAGTATATTATAAGGG+TGG 0.538179 2_4:+22131456 None:intergenic
GAACGAGAGTGGCCGTTCGT+GGG 0.539483 2_4:-22129489 Msa0321080:CDS
TCATCCACGTGAGAGAAGAT+TGG 0.539701 2_4:-22126134 Msa0321080:three_prime_UTR
CTATCACCACATAAACTAAG+AGG 0.541577 2_4:-22131292 Msa0321080:CDS
TGCTGAAGGATATGAAGGGA+AGG 0.544900 2_4:-22129558 Msa0321080:CDS
AGGAGGTCTTCTATATATGA+AGG 0.544983 2_4:-22126917 Msa0321080:CDS
CAATAAGCTAATAATAGCCA+AGG 0.551809 2_4:-22126174 Msa0321080:three_prime_UTR
TGTGAGTGCCCTGTTGTGAA+AGG 0.551981 2_4:-22127856 Msa0321080:CDS
ACAGTGACAACCATTTACCT+TGG 0.554404 2_4:+22127170 None:intergenic
CAAAACCATGTTATATAGTG+TGG 0.555176 2_4:+22129668 None:intergenic
TGTGGTCATAGCAGTTGTTG+TGG 0.555649 2_4:-22126740 Msa0321080:CDS
TCATGTTAGATGTTCCATGA+AGG 0.556536 2_4:-22129441 Msa0321080:CDS
TTTCTGAATAAAGGAATCCA+AGG 0.556578 2_4:-22127187 Msa0321080:intron
TGAAAGAAATGGAGGATGCT+GGG 0.557226 2_4:-22128062 Msa0321080:CDS
TTGCAGTGAGGAAATAGAGG+TGG 0.557697 2_4:+22131431 None:intergenic
CGATGAGACTGAAACTTGAA+AGG 0.557716 2_4:+22131151 None:intergenic
AATGGTTGTCACTGTCCAGT+TGG 0.559053 2_4:-22127162 Msa0321080:CDS
TTCTTTCAATGAATCACCAA+AGG 0.559078 2_4:+22129892 None:intergenic
GGCACTCACAAACTCTTCCC+CGG 0.560043 2_4:+22127869 None:intergenic
GAAACACAGATGATTTGAGT+TGG 0.560678 2_4:+22125899 None:intergenic
TATGTCACAATACATGCCAC+TGG 0.562076 2_4:-22126382 Msa0321080:CDS
GACGGTAATAATAAATGTGA+AGG 0.562585 2_4:-22127129 Msa0321080:intron
GCAAGATGTTCTTTAAACAA+TGG 0.562595 2_4:-22127657 Msa0321080:CDS
CTGCAGCTGTAAGAACACTT+GGG 0.564075 2_4:-22126962 Msa0321080:CDS
CATAGAGTAGCGAACGAGAG+TGG 0.567502 2_4:-22129500 Msa0321080:CDS
ATTATGGAGGGTATATTGTA+GGG 0.569344 2_4:-22131231 Msa0321080:CDS
TAGACAAAATCTTCTAACAA+AGG 0.570998 2_4:+22125837 None:intergenic
TGGTGATCCTGAAGCTGATG+TGG 0.575174 2_4:-22129248 Msa0321080:CDS
AGTGAGGAAATAGAGGTGGA+AGG 0.576037 2_4:+22131435 None:intergenic
ATTGCCTTGTCGTAAAGGCT+CGG 0.576661 2_4:+22126329 None:intergenic
ATTTCTCTACTAATACTGAT+GGG 0.578474 2_4:+22129915 None:intergenic
TTTGGTATTCCAAATTATGG+AGG 0.579193 2_4:-22131244 Msa0321080:CDS
TTGGTATTCCAAATTATGGA+GGG 0.579285 2_4:-22131243 Msa0321080:CDS
AGTTATGATTGTAAGTGCAA+AGG 0.580610 2_4:-22126937 Msa0321080:CDS
AAGTGGTTCAAAATTTGGAA+AGG 0.581324 2_4:-22126773 Msa0321080:CDS
AGATGTTCTTTAAACAATGG+AGG 0.584241 2_4:-22127654 Msa0321080:CDS
ACGTGGATGATACTCTTCAA+CGG 0.584645 2_4:+22126147 None:intergenic
TCTGGCCTAAAATATAAAGC+AGG 0.584964 2_4:-22125878 Msa0321080:three_prime_UTR
TCCACTCGATTATCAGGGTG+AGG 0.587840 2_4:+22129815 None:intergenic
CTGTGCGCCGGATCCAGAGA+AGG 0.590426 2_4:-22129585 Msa0321080:CDS
AATTGTCTTGGTCTTACATG+TGG 0.590717 2_4:+22131501 None:intergenic
AAGGGTGGACGTGTTGTACA+AGG 0.595432 2_4:+22131471 None:intergenic
AAAGATTGAACAAACATCAC+AGG 0.597122 2_4:-22129212 Msa0321080:intron
GATGGTTATACAACATGTGA+AGG 0.600873 2_4:-22127817 Msa0321080:intron
GCTCAGATTCTTGAGAGAGG+TGG 0.605027 2_4:-22129707 Msa0321080:CDS
CCTCAAGTCTGTTTAAGTGG+AGG 0.606170 2_4:-22128640 Msa0321080:intron
AAAATATAAAGCAGGTGAGG+AGG 0.606310 2_4:-22125870 Msa0321080:three_prime_UTR
CAGATTGGAGGAGGATCTCG+TGG 0.606613 2_4:-22129042 Msa0321080:CDS
ATTGTTCTTCTTGATCGTGG+AGG 0.607211 2_4:-22131121 Msa0321080:intron
CATATTCCACTCGATTATCA+GGG 0.608794 2_4:+22129810 None:intergenic
CCAGTTGGATTTCACGGAGA+CGG 0.609600 2_4:-22127147 Msa0321080:CDS
TCACTCCACACTATATAACA+TGG 0.609817 2_4:-22129673 Msa0321080:CDS
AATCCCACCAAACCCACGAA+CGG 0.618961 2_4:+22129477 None:intergenic
ACGAACAGCAACGACGAATG+TGG 0.619268 2_4:-22129779 Msa0321080:CDS
TATGATTGTAAGTGCAAAGG+AGG 0.619599 2_4:-22126934 Msa0321080:CDS
GTTCTACAAGTATAGACTAA+GGG 0.621503 2_4:-22126695 Msa0321080:intron
GCAGTACTGAACTGAACAAG+CGG 0.622319 2_4:+22127596 None:intergenic
GAGTGTCTTGAAAGAAATGG+AGG 0.627185 2_4:-22128070 Msa0321080:CDS
AGGCAATGTGTAAGAAAACA+AGG 0.631926 2_4:-22126313 Msa0321080:intron
GTGAAAGGTGTTCAGTATAG+GGG 0.636421 2_4:-22127841 Msa0321080:CDS
GAGGAAAGCAAAGATGCTGA+AGG 0.636553 2_4:-22129959 Msa0321080:CDS
CCTAAAATATAAAGCAGGTG+AGG 0.636645 2_4:-22125873 Msa0321080:three_prime_UTR
GAATCCGAGCCTTTACGACA+AGG 0.641114 2_4:-22126333 Msa0321080:CDS
ATTTCTCAGGATACTTTCCG+GGG 0.641238 2_4:-22127886 Msa0321080:intron
CCTCCACTTAAACAGACTTG+AGG 0.645933 2_4:+22128640 None:intergenic
AATAAGCTAATAATAGCCAA+GGG 0.649132 2_4:-22126173 Msa0321080:three_prime_UTR
CATGCTCAGATTCTTGAGAG+AGG 0.649472 2_4:-22129710 Msa0321080:CDS
AAACGTGCTTGTCAATGTGA+TGG 0.649602 2_4:-22126985 Msa0321080:CDS
ACCTCACCCTGATAATCGAG+TGG 0.649688 2_4:-22129816 Msa0321080:CDS
ATAGCCAATCTTCTCTCACG+TGG 0.650529 2_4:+22126130 None:intergenic
GATAACTATGGATTCTCCCG+AGG 0.654495 2_4:-22129978 Msa0321080:CDS
CCGGCGCACAGTATCTTCCG+TGG 0.661230 2_4:+22129597 None:intergenic
CCACGGAAGATACTGTGCGC+CGG 0.663423 2_4:-22129597 Msa0321080:CDS
GTCAGCCACTAAAACTGCTG+CGG 0.668621 2_4:+22130018 None:intergenic
TATGAAGAAAGAACAAGACA+AGG 0.672202 2_4:+22131365 None:intergenic
TGCAGCTGTAAGAACACTTG+GGG 0.674243 2_4:-22126961 Msa0321080:CDS
ACTGAACACCTTTCACAACA+GGG 0.682475 2_4:+22127848 None:intergenic
AAGTCTCAATGTATAAACCA+CGG 0.694947 2_4:-22129614 Msa0321080:CDS
AACAACTGCTATGACCACAA+AGG 0.712302 2_4:+22126744 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAGTAATATTTGTATATT+TGG + chr2_4:22126100-22126119 None:intergenic 10.0%
!!! TGTTTTTTTTTTTTTTTTGT+TGG - chr2_4:22126769-22126788 Msa0321080:CDS 10.0%
!!! TTTTTAATTACTGATAAAAA+TGG + chr2_4:22127271-22127290 None:intergenic 10.0%
!! TATCAATAGAAAAATTCAAA+TGG + chr2_4:22125914-22125933 None:intergenic 15.0%
!! TATATCAATTAAATCCTATA+AGG + chr2_4:22126821-22126840 None:intergenic 15.0%
!!! AACTAAAACAATTTTCAAAT+GGG + chr2_4:22127409-22127428 None:intergenic 15.0%
!! CTTGGATTTAAAAAAAAATT+TGG + chr2_4:22127573-22127592 None:intergenic 15.0%
!!! TTTTTTTTAAATCCAAGTTT+TGG - chr2_4:22127576-22127595 Msa0321080:intron 15.0%
!! AAATTTATTAATAGCATGTA+AGG + chr2_4:22128775-22128794 None:intergenic 15.0%
!!! CTGAATATTGAATTATTTTT+AGG + chr2_4:22129294-22129313 None:intergenic 15.0%
!! CTAAAAATAATTCAATATTC+AGG - chr2_4:22129292-22129311 Msa0321080:intron 15.0%
!! ACAAAGTTAACTAAAAAAAT+TGG - chr2_4:22129355-22129374 Msa0321080:intron 15.0%
!!! AGAGAATAATTTTTTTTGTA+GGG + chr2_4:22130203-22130222 None:intergenic 15.0%
!! GAAAAGAAAAATTATAATCT+TGG + chr2_4:22130886-22130905 None:intergenic 15.0%
!! CAAAAAATAAAAACAGATAT+AGG + chr2_4:22131261-22131280 None:intergenic 15.0%
!!! ATCCTATTTTTATACTATGT+TGG - chr2_4:22125817-22125836 Msa0321080:three_prime_UTR 20.0%
!! TACCAACATAGTATAAAAAT+AGG + chr2_4:22125822-22125841 None:intergenic 20.0%
!! CTAACTAATATTAGAGAAAT+AGG + chr2_4:22125872-22125891 None:intergenic 20.0%
!!! TAATATTTGTATATTTGGTG+GGG + chr2_4:22126095-22126114 None:intergenic 20.0%
!! GTAATATTTGTATATTTGGT+GGG + chr2_4:22126096-22126115 None:intergenic 20.0%
!! AGTAATATTTGTATATTTGG+TGG + chr2_4:22126097-22126116 None:intergenic 20.0%
!! TATATCTGTGAATCATATAA+AGG - chr2_4:22127019-22127038 Msa0321080:intron 20.0%
!!! GGAATTACAGAAAATTTTAT+AGG + chr2_4:22127135-22127154 None:intergenic 20.0%
!!! ACTAAAACAATTTTCAAATG+GGG + chr2_4:22127408-22127427 None:intergenic 20.0%
!!! CAACTAAAACAATTTTCAAA+TGG + chr2_4:22127410-22127429 None:intergenic 20.0%
!!! AATAAAATGACTAGTCTTAA+TGG - chr2_4:22127530-22127549 Msa0321080:intron 20.0%
!!! AAGTTTTACTAAGAATAGAT+TGG - chr2_4:22127845-22127864 Msa0321080:CDS 20.0%
!!! AATTTTGTGAAGAATTTCAA+GGG - chr2_4:22127961-22127980 Msa0321080:intron 20.0%
!!! CAAAAATTTTGAGACTTAAT+TGG + chr2_4:22128843-22128862 None:intergenic 20.0%
!!! GATTCTTTTAGTTGAAAATA+TGG - chr2_4:22129121-22129140 Msa0321080:intron 20.0%
!! TGTATCTTACAATTCATAAT+AGG + chr2_4:22129196-22129215 None:intergenic 20.0%
!!! CCACTTATTTTTACTTAAAA+AGG + chr2_4:22129235-22129254 None:intergenic 20.0%
!!! CCTTTTTAAGTAAAAATAAG+TGG - chr2_4:22129232-22129251 Msa0321080:CDS 20.0%
!!! TGAACATTTTATTATTTCTC+AGG - chr2_4:22129796-22129815 Msa0321080:CDS 20.0%
!!! GAGAGAATAATTTTTTTTGT+AGG + chr2_4:22130204-22130223 None:intergenic 20.0%
!! AAAAAAGAACTCATATTACA+TGG - chr2_4:22130410-22130429 Msa0321080:intron 20.0%
!! TATTTATTGAACTACATTCT+TGG - chr2_4:22130458-22130477 Msa0321080:intron 20.0%
!! ACATATAGTTGAGAATAAAT+AGG + chr2_4:22131030-22131049 None:intergenic 20.0%
!!! AATAACTGCATTTAAAATCT+AGG + chr2_4:22131072-22131091 None:intergenic 20.0%
!!! TATGTGGTTTTAACTTTTAA+TGG + chr2_4:22131209-22131228 None:intergenic 20.0%
!! ATGCTAATAAACTAATTATG+TGG + chr2_4:22131225-22131244 None:intergenic 20.0%
!!! TTATTTTTTGTAGTCTTACA+TGG - chr2_4:22131271-22131290 Msa0321080:CDS 20.0%
!! AAAGATGTAAATTAGTTGAA+AGG + chr2_4:22131434-22131453 None:intergenic 20.0%
!! TAGATGTCAATATTATTCTA+TGG + chr2_4:22131695-22131714 None:intergenic 20.0%
!! GAAGGAAGAGTATATTATAA+GGG + chr2_4:22126245-22126264 None:intergenic 25.0%
!! TTTTTACCTCTTAGTTTATG+TGG + chr2_4:22126412-22126431 None:intergenic 25.0%
! AACTTTGGTATTCCAAATTA+TGG - chr2_4:22126448-22126467 Msa0321080:intron 25.0%
! GGATTTAATTGATATATCCA+TGG - chr2_4:22126825-22126844 Msa0321080:intron 25.0%
!!! TTAAAGACTTTTGACTTTCA+TGG - chr2_4:22126897-22126916 Msa0321080:intron 25.0%
!!! TACTTTTAAAGTCACACATA+CGG - chr2_4:22126924-22126943 Msa0321080:CDS 25.0%
! ATTTCTCTACTAATACTGAT+GGG + chr2_4:22127783-22127802 None:intergenic 25.0%
!! TTTTACTAAGAATAGATTGG+AGG - chr2_4:22127848-22127867 Msa0321080:CDS 25.0%
! TTTACTAAGAATAGATTGGA+GGG - chr2_4:22127849-22127868 Msa0321080:CDS 25.0%
!! GAATTTTGTGAAGAATTTCA+AGG - chr2_4:22127960-22127979 Msa0321080:intron 25.0%
! ATATAGTGTATGAGAATTTG+AGG - chr2_4:22128160-22128179 Msa0321080:intron 25.0%
!! CATTTCTTAATTTTGTCAAG+AGG + chr2_4:22128424-22128443 None:intergenic 25.0%
! GACAAAATTAAGAAATGTGT+TGG - chr2_4:22128427-22128446 Msa0321080:intron 25.0%
! TTTATTTGCTTACAACAGTT+TGG + chr2_4:22128556-22128575 None:intergenic 25.0%
! AAACTGTTGTAAGCAAATAA+AGG - chr2_4:22128555-22128574 Msa0321080:intron 25.0%
!! ACATTGTTTAAAACCAATGT+TGG + chr2_4:22128695-22128714 None:intergenic 25.0%
! TTCAATACGTATTTGATAGA+TGG - chr2_4:22128735-22128754 Msa0321080:intron 25.0%
! ATCAGTTACGTTAATAAGAA+TGG + chr2_4:22128934-22128953 None:intergenic 25.0%
! TATTAACGTAACTGATGTAT+CGG - chr2_4:22128938-22128957 Msa0321080:intron 25.0%
!!! GTTTTGTTTATTTTGCCTAA+AGG - chr2_4:22128971-22128990 Msa0321080:intron 25.0%
!! TATTTTGCCTAAAGGAAAAT+TGG - chr2_4:22128979-22128998 Msa0321080:intron 25.0%
! CAATTCATGATGCTTAAAAT+AGG + chr2_4:22129170-22129189 None:intergenic 25.0%
! ATATTCAGGTCATAAATCAA+AGG - chr2_4:22129306-22129325 Msa0321080:intron 25.0%
!! TTCCTACAACGTATATATTT+TGG + chr2_4:22129452-22129471 None:intergenic 25.0%
! AATATATACGTTGTAGGAAT+TGG - chr2_4:22129453-22129472 Msa0321080:CDS 25.0%
!! TTGTAAGATATTGATAACCA+TGG - chr2_4:22129532-22129551 Msa0321080:CDS 25.0%
! GAGTGATATTAACTTTATTC+TGG - chr2_4:22129574-22129593 Msa0321080:CDS 25.0%
! TTATGTTTGGGAAGAAAAAT+TGG + chr2_4:22129714-22129733 None:intergenic 25.0%
! AGTGAATGGTAATTATGTTT+GGG + chr2_4:22129726-22129745 None:intergenic 25.0%
! TAGTGAATGGTAATTATGTT+TGG + chr2_4:22129727-22129746 None:intergenic 25.0%
! ACTAGACTAGACATATATAA+TGG - chr2_4:22129743-22129762 Msa0321080:CDS 25.0%
!!! TCATTTTGAGTAGAATAATC+AGG + chr2_4:22129953-22129972 None:intergenic 25.0%
!!! AAAATGATAAGCTATTTTCG+TGG - chr2_4:22129966-22129985 Msa0321080:CDS 25.0%
!! TTTCTTTATTTGACAGCTTT+CGG - chr2_4:22130011-22130030 Msa0321080:CDS 25.0%
! AAGAAAGAAAACTGAAGATT+TGG + chr2_4:22130129-22130148 None:intergenic 25.0%
!! TTCTTTTCTTTTATTCCGTT+AGG - chr2_4:22130144-22130163 Msa0321080:intron 25.0%
!! GTGTAATATGAGTACTTTTA+TGG - chr2_4:22130170-22130189 Msa0321080:intron 25.0%
!!! TTCATCAAAATTTGATGATG+CGG - chr2_4:22130247-22130266 Msa0321080:intron 25.0%
! AAGATGATATCAAAGACTAA+CGG - chr2_4:22130328-22130347 Msa0321080:intron 25.0%
!! AGATTTTCCTTTCTGAATAA+AGG - chr2_4:22130499-22130518 Msa0321080:intron 25.0%
!! CATTGAATATGTGGTTTTTA+GGG + chr2_4:22131108-22131127 None:intergenic 25.0%
! GTAAATATGCATTGAATATG+TGG + chr2_4:22131117-22131136 None:intergenic 25.0%
! AATAAGCTAATAATAGCCAA+GGG - chr2_4:22131522-22131541 Msa0321080:five_prime_UTR 25.0%
! AGACAAAATCTTCTAACAAA+GGG + chr2_4:22131860-22131879 None:intergenic 25.0%
! TAGACAAAATCTTCTAACAA+AGG + chr2_4:22131861-22131880 None:intergenic 25.0%
AAAGATAGGTAAAATGGAAG+AGG + chr2_4:22126030-22126049 None:intergenic 30.0%
! GGAAGGAAGAGTATATTATA+AGG + chr2_4:22126246-22126265 None:intergenic 30.0%
!!! TTGTTTGTTTTTTTGCAGTG+AGG + chr2_4:22126279-22126298 None:intergenic 30.0%
TATGAAGAAAGAACAAGACA+AGG + chr2_4:22126333-22126352 None:intergenic 30.0%
AAACTAAGAGGTAAAAACGA+TGG - chr2_4:22126415-22126434 Msa0321080:intron 30.0%
TTTGGTATTCCAAATTATGG+AGG - chr2_4:22126451-22126470 Msa0321080:intron 30.0%
TTGGTATTCCAAATTATGGA+GGG - chr2_4:22126452-22126471 Msa0321080:intron 30.0%
ACAATATACCCTCCATAATT+TGG + chr2_4:22126463-22126482 None:intergenic 30.0%
! AATTATGGAGGGTATATTGT+AGG - chr2_4:22126463-22126482 Msa0321080:intron 30.0%
! ATTATGGAGGGTATATTGTA+GGG - chr2_4:22126464-22126483 Msa0321080:intron 30.0%
!!! CTTGTTTTTTTAGTCAACCT+TGG - chr2_4:22126612-22126631 Msa0321080:intron 30.0%
AACATTAAATTAGCATGTGC+AGG + chr2_4:22126689-22126708 None:intergenic 30.0%
!! GAGATTAGTTATAGCCTTAT+AGG - chr2_4:22126804-22126823 Msa0321080:intron 30.0%
CAAGGTAACGATTGTTTAAA+CGG - chr2_4:22126849-22126868 Msa0321080:intron 30.0%
!! TGTTGCTTTGATGATAGAAT+TGG - chr2_4:22127052-22127071 Msa0321080:intron 30.0%
GGAGGAAAGGTAATAAAAAT+AGG + chr2_4:22127156-22127175 None:intergenic 30.0%
TTTCGCAGACAATTATCAAA+TGG - chr2_4:22127236-22127255 Msa0321080:intron 30.0%
! AAACAATTTTCAAATGGGGT+TGG + chr2_4:22127404-22127423 None:intergenic 30.0%
ATAATATGTTTGCTTCCAAG+AGG + chr2_4:22127447-22127466 None:intergenic 30.0%
AGATCAATTCCAATGACAAA+TGG - chr2_4:22127467-22127486 Msa0321080:intron 30.0%
! ATTCCAATGACAAATGGTTT+TGG - chr2_4:22127473-22127492 Msa0321080:intron 30.0%
TTAATGGAAAAGTCACTCAA+AGG - chr2_4:22127546-22127565 Msa0321080:intron 30.0%
TCAATAAGCATTCCAAAACT+TGG + chr2_4:22127591-22127610 None:intergenic 30.0%
GATTTCTCTACTAATACTGA+TGG + chr2_4:22127784-22127803 None:intergenic 30.0%
GTATTAGTAGAGAAATCCTT+TGG - chr2_4:22127787-22127806 Msa0321080:intron 30.0%
TTCTTTCAATGAATCACCAA+AGG + chr2_4:22127806-22127825 None:intergenic 30.0%
CAAAACCATGTTATATAGTG+TGG + chr2_4:22128030-22128049 None:intergenic 30.0%
AAGTCTCAATGTATAAACCA+CGG - chr2_4:22128081-22128100 Msa0321080:CDS 30.0%
! ATTTTGCTGAAGGATATGAA+GGG - chr2_4:22128133-22128152 Msa0321080:intron 30.0%
GAAGTTGTCATGAAATCATT+AGG - chr2_4:22128303-22128322 Msa0321080:intron 30.0%
TTTCATATACTTCTGTCGAT+TGG - chr2_4:22128336-22128355 Msa0321080:intron 30.0%
AAAGATTGAACAAACATCAC+AGG - chr2_4:22128483-22128502 Msa0321080:intron 30.0%
! TCCATTTGTGTTTTACAGAT+TGG - chr2_4:22128638-22128657 Msa0321080:intron 30.0%
TCCAATCTGTAAAACACAAA+TGG + chr2_4:22128642-22128661 None:intergenic 30.0%
! ATTTGTGTTTTACAGATTGG+AGG - chr2_4:22128641-22128660 Msa0321080:CDS 30.0%
TAAAACCAATGTTGGCAAAA+TGG + chr2_4:22128687-22128706 None:intergenic 30.0%
TTAAACAATGTCCAGTATAG+AGG - chr2_4:22128704-22128723 Msa0321080:CDS 30.0%
ATCAAAGGACAAAAGAAAAG+TGG - chr2_4:22129321-22129340 Msa0321080:intron 30.0%
GTAGTGAATGATTCATTAGA+AGG - chr2_4:22129397-22129416 Msa0321080:CDS 30.0%
AGGAATCATATGATTCATCA+AGG - chr2_4:22129417-22129436 Msa0321080:CDS 30.0%
GGAATCATATGATTCATCAA+GGG - chr2_4:22129418-22129437 Msa0321080:CDS 30.0%
GTCCAAAATATATACGTTGT+AGG - chr2_4:22129447-22129466 Msa0321080:CDS 30.0%
AATGAGTGTCTTGAAAGAAA+TGG - chr2_4:22129622-22129641 Msa0321080:CDS 30.0%
TATATGTCTAGTCTAGTGAA+TGG + chr2_4:22129740-22129759 None:intergenic 30.0%
! TTATTTCTCAGGATACTTTC+CGG - chr2_4:22129807-22129826 Msa0321080:CDS 30.0%
!!! GTAGCTTTTTAGAATTCAGA+AGG + chr2_4:22129908-22129927 None:intergenic 30.0%
TTGTTTAAAGAACATCTTGC+TGG + chr2_4:22130038-22130057 None:intergenic 30.0%
GCAAGATGTTCTTTAAACAA+TGG - chr2_4:22130038-22130057 Msa0321080:CDS 30.0%
AGATGTTCTTTAAACAATGG+AGG - chr2_4:22130041-22130060 Msa0321080:CDS 30.0%
! TTTCTTTTATTCCGTTAGGT+CGG - chr2_4:22130148-22130167 Msa0321080:intron 30.0%
AGGAGAAGATTTGAATTACA+GGG - chr2_4:22130351-22130370 Msa0321080:intron 30.0%
GAGAATCTAAAAAAAGCTCT+AGG - chr2_4:22130375-22130394 Msa0321080:intron 30.0%
TTGGATTCCTTTATTCAGAA+AGG + chr2_4:22130509-22130528 None:intergenic 30.0%
TTTCTGAATAAAGGAATCCA+AGG - chr2_4:22130508-22130527 Msa0321080:intron 30.0%
ATAAAGGAATCCAAGGTAAA+TGG - chr2_4:22130515-22130534 Msa0321080:intron 30.0%
GACGGTAATAATAAATGTGA+AGG - chr2_4:22130566-22130585 Msa0321080:intron 30.0%
AGTTATGATTGTAAGTGCAA+AGG - chr2_4:22130758-22130777 Msa0321080:intron 30.0%
AAGGAACAAGATATGTGTAT+TGG - chr2_4:22130797-22130816 Msa0321080:intron 30.0%
GAAAGAAGTGGTTCAAAATT+TGG - chr2_4:22130917-22130936 Msa0321080:intron 30.0%
AAGTGGTTCAAAATTTGGAA+AGG - chr2_4:22130922-22130941 Msa0321080:intron 30.0%
TGTTCTACAAGTATAGACTA+AGG - chr2_4:22130999-22131018 Msa0321080:intron 30.0%
GTTCTACAAGTATAGACTAA+GGG - chr2_4:22131000-22131019 Msa0321080:intron 30.0%
! GCATTGAATATGTGGTTTTT+AGG + chr2_4:22131109-22131128 None:intergenic 30.0%
!! CATGAACTACATTATTTTGC+TGG + chr2_4:22131340-22131359 None:intergenic 30.0%
CAATAAGCTAATAATAGCCA+AGG - chr2_4:22131521-22131540 Msa0321080:five_prime_UTR 30.0%
! AATTTTCCTTAGCTGTGAAA+TGG + chr2_4:22131607-22131626 None:intergenic 30.0%
! AAATTCAGGACTTTTACTGT+AGG - chr2_4:22131622-22131641 Msa0321080:intron 30.0%
ATAAAAAATTCTCAGCTGCA+TGG + chr2_4:22131904-22131923 None:intergenic 30.0%
GAGGGAAAAGATAGGTAAAA+TGG + chr2_4:22126036-22126055 None:intergenic 35.0%
CAAAATGTGACGTAAAGAGA+GGG + chr2_4:22126054-22126073 None:intergenic 35.0%
TCAAAATGTGACGTAAAGAG+AGG + chr2_4:22126055-22126074 None:intergenic 35.0%
! TATTTGTATATTTGGTGGGG+AGG + chr2_4:22126092-22126111 None:intergenic 35.0%
!! AATTGTCTTGGTCTTACATG+TGG + chr2_4:22126197-22126216 None:intergenic 35.0%
CAAGGACTTTGTAATTGTCT+TGG + chr2_4:22126209-22126228 None:intergenic 35.0%
! GGAAGAGTATATTATAAGGG+TGG + chr2_4:22126242-22126261 None:intergenic 35.0%
! TTTTTGCAGTGAGGAAATAG+AGG + chr2_4:22126270-22126289 None:intergenic 35.0%
CTATCACCACATAAACTAAG+AGG - chr2_4:22126403-22126422 Msa0321080:CDS 35.0%
TCACTTGTTTATCCTGAGAA+AGG - chr2_4:22126487-22126506 Msa0321080:intron 35.0%
CGATCAAGAAGAACAATAGT+AGG + chr2_4:22126571-22126590 None:intergenic 35.0%
ACTATTGTTCTTCTTGATCG+TGG - chr2_4:22126571-22126590 Msa0321080:intron 35.0%
AAGAAAGTCAACGATAACCA+AGG + chr2_4:22126632-22126651 None:intergenic 35.0%
AATTGATATATCCATGGCCA+AGG - chr2_4:22126831-22126850 Msa0321080:intron 35.0%
CGTTTAAACAATCGTTACCT+TGG + chr2_4:22126851-22126870 None:intergenic 35.0%
TTTCTTACTCATTTCCGCAT+AGG - chr2_4:22127097-22127116 Msa0321080:intron 35.0%
TACAAGGTTAAACTCAACGA+GGG + chr2_4:22127191-22127210 None:intergenic 35.0%
TTACAAGGTTAAACTCAACG+AGG + chr2_4:22127192-22127211 None:intergenic 35.0%
! CTTTGTCGTTTGTAGTTACA+AGG + chr2_4:22127207-22127226 None:intergenic 35.0%
!! GTTGTTATTGATTAGCCTCT+TGG - chr2_4:22127429-22127448 Msa0321080:intron 35.0%
CAACCAAAACCATTTGTCAT+TGG + chr2_4:22127479-22127498 None:intergenic 35.0%
!!! CAAATGGTTTTGGTTGTTGT+CGG - chr2_4:22127483-22127502 Msa0321080:intron 35.0%
!! AGAGTGTTATTTCGCCTTAA+AGG - chr2_4:22127630-22127649 Msa0321080:CDS 35.0%
! GTTATTTCGCCTTAAAGGTA+TGG - chr2_4:22127635-22127654 Msa0321080:CDS 35.0%
TGATGAGTCACTGATAACTA+TGG - chr2_4:22127705-22127724 Msa0321080:intron 35.0%
CATATTCCACTCGATTATCA+GGG + chr2_4:22127888-22127907 None:intergenic 35.0%
TCATATTCCACTCGATTATC+AGG + chr2_4:22127889-22127908 None:intergenic 35.0%
TCACTCCACACTATATAACA+TGG - chr2_4:22128022-22128041 Msa0321080:intron 35.0%
! GATTTTGCTGAAGGATATGA+AGG - chr2_4:22128132-22128151 Msa0321080:intron 35.0%
TCATGTTAGATGTTCCATGA+AGG - chr2_4:22128254-22128273 Msa0321080:intron 35.0%
!!! GCTGTATTTTTTCTCCTTCA+TGG + chr2_4:22128271-22128290 None:intergenic 35.0%
GAAGTAACTAACCTCTATAC+TGG + chr2_4:22128718-22128737 None:intergenic 35.0%
GTTGAAGTTGAAATCACAGT+CGG + chr2_4:22128903-22128922 None:intergenic 35.0%
CTGATGTATCGGAATTCTAA+TGG - chr2_4:22128949-22128968 Msa0321080:intron 35.0%
! GTTCTCTCCAATTTTCCTTT+AGG + chr2_4:22128989-22129008 None:intergenic 35.0%
CAAGTTACAATACATGCTAG+TGG + chr2_4:22129515-22129534 None:intergenic 35.0%
TATTTCTCAGGATACTTTCC+GGG - chr2_4:22129808-22129827 Msa0321080:CDS 35.0%
!! TTGTGAAAGGTGTTCAGTAT+AGG - chr2_4:22129852-22129871 Msa0321080:CDS 35.0%
!! TGTGAAAGGTGTTCAGTATA+GGG - chr2_4:22129853-22129872 Msa0321080:CDS 35.0%
GATGGTTATACAACATGTGA+AGG - chr2_4:22129878-22129897 Msa0321080:CDS 35.0%
ATCAGGTAGTGACTGATAAT+AGG + chr2_4:22129936-22129955 None:intergenic 35.0%
CTTTAAACAATGGAGGTTGT+TGG - chr2_4:22130048-22130067 Msa0321080:CDS 35.0%
GTCACGCGTATAATCAAATT+TGG - chr2_4:22130300-22130319 Msa0321080:intron 35.0%
CGCGTATAATCAAATTTGGA+TGG - chr2_4:22130304-22130323 Msa0321080:intron 35.0%
ATGATATCAAAGACTAACGG+AGG - chr2_4:22130331-22130350 Msa0321080:intron 35.0%
GAGGAGAAGATTTGAATTAC+AGG - chr2_4:22130350-22130369 Msa0321080:intron 35.0%
TTGAACTACATTCTTGGACT+TGG - chr2_4:22130464-22130483 Msa0321080:intron 35.0%
TATGATTGTAAGTGCAAAGG+AGG - chr2_4:22130761-22130780 Msa0321080:intron 35.0%
AGGAGGTCTTCTATATATGA+AGG - chr2_4:22130778-22130797 Msa0321080:intron 35.0%
CATGTATTTGCAGAAAGAAG+TGG - chr2_4:22130905-22130924 Msa0321080:intron 35.0%
AGGCAATGTGTAAGAAAACA+AGG - chr2_4:22131382-22131401 Msa0321080:CDS 35.0%
TTAGCTTATTGTATGTCTGC+AGG + chr2_4:22131512-22131531 None:intergenic 35.0%
TTAAGTCCATTTCACAGCTA+AGG - chr2_4:22131598-22131617 Msa0321080:intron 35.0%
TTCACAGCTAAGGAAAATTC+AGG - chr2_4:22131608-22131627 Msa0321080:intron 35.0%
GAAACACAGATGATTTGAGT+TGG + chr2_4:22131799-22131818 None:intergenic 35.0%
ACTCAAATCATCTGTGTTTC+TGG - chr2_4:22131799-22131818 Msa0321080:intron 35.0%
TCTGGCCTAAAATATAAAGC+AGG - chr2_4:22131817-22131836 Msa0321080:intron 35.0%
! CCTCACCTGCTTTATATTTT+AGG + chr2_4:22131825-22131844 None:intergenic 35.0%
CCTAAAATATAAAGCAGGTG+AGG - chr2_4:22131822-22131841 Msa0321080:intron 35.0%
AAAATATAAAGCAGGTGAGG+AGG - chr2_4:22131825-22131844 Msa0321080:intron 35.0%
GATAGGTAAAATGGAAGAGG+AGG + chr2_4:22126027-22126046 None:intergenic 40.0%
CGTAAAGAGAGGGAAAAGAT+AGG + chr2_4:22126044-22126063 None:intergenic 40.0%
CTCAACAATGAAACCTTGCA+TGG - chr2_4:22126300-22126319 Msa0321080:intron 40.0%
ACAAGGAGAAAAACCATGCA+AGG + chr2_4:22126316-22126335 None:intergenic 40.0%
CTTCATAGCAGCTATGTTCA+AGG - chr2_4:22126346-22126365 Msa0321080:CDS 40.0%
!! CTATGTTCAAGGTCGTTTTG+TGG - chr2_4:22126357-22126376 Msa0321080:CDS 40.0%
GGTAGAGAAAAACAGCATCA+CGG - chr2_4:22126378-22126397 Msa0321080:CDS 40.0%
!! GGTAAAAACGATGGTGCTAT+AGG - chr2_4:22126424-22126443 Msa0321080:intron 40.0%
!! GATGGTGCTATAGGAAACTT+TGG - chr2_4:22126433-22126452 Msa0321080:intron 40.0%
CATGGTTGTCAAGTCTTTGA+AGG - chr2_4:22126514-22126533 Msa0321080:intron 40.0%
CGATGAGACTGAAACTTGAA+AGG + chr2_4:22126547-22126566 None:intergenic 40.0%
ATTGTTCTTCTTGATCGTGG+AGG - chr2_4:22126574-22126593 Msa0321080:intron 40.0%
GGCTACAAAGAAATCCTATG+CGG + chr2_4:22127114-22127133 None:intergenic 40.0%
ACAAGGTTAAACTCAACGAG+GGG + chr2_4:22127190-22127209 None:intergenic 40.0%
TTGAGCATGCCATACCTTTA+AGG + chr2_4:22127647-22127666 None:intergenic 40.0%
TTCAGCATCTTTGCTTTCCT+CGG + chr2_4:22127737-22127756 None:intergenic 40.0%
ATCGAGTGGAATATGAGTTC+TGG - chr2_4:22127893-22127912 Msa0321080:intron 40.0%
CTGCTTTCAACAAATGGCTT+TGG + chr2_4:22128054-22128073 None:intergenic 40.0%
! CACTGACTGCTTTCAACAAA+TGG + chr2_4:22128060-22128079 None:intergenic 40.0%
! TGTGTTTTACAGATTGGAGG+AGG - chr2_4:22128644-22128663 Msa0321080:CDS 40.0%
! TGTCACCATTTTGCCAACAT+TGG - chr2_4:22128679-22128698 Msa0321080:CDS 40.0%
TTGTCATCTGTGTAGTGTAG+TGG - chr2_4:22128860-22128879 Msa0321080:intron 40.0%
GGCTATATGTGCTGGATTTA+AGG - chr2_4:22129021-22129040 Msa0321080:CDS 40.0%
GAACCTCAAGTCTGTTTAAG+TGG - chr2_4:22129052-22129071 Msa0321080:intron 40.0%
AAGTCTGTTTAAGTGGAGGT+TGG - chr2_4:22129059-22129078 Msa0321080:intron 40.0%
AAGGACAAAAGAAAAGTGGC+TGG - chr2_4:22129325-22129344 Msa0321080:intron 40.0%
! TGGCTAGCTACACTAAGTTT+AGG - chr2_4:22129375-22129394 Msa0321080:intron 40.0%
! ACAGATGATGCTTTGAACCA+TGG + chr2_4:22129552-22129571 None:intergenic 40.0%
GAGTGTCTTGAAAGAAATGG+AGG - chr2_4:22129625-22129644 Msa0321080:CDS 40.0%
TTGAAAGAAATGGAGGATGC+TGG - chr2_4:22129632-22129651 Msa0321080:CDS 40.0%
TGAAAGAAATGGAGGATGCT+GGG - chr2_4:22129633-22129652 Msa0321080:CDS 40.0%
TGCTAATGTAACTGCTTGCA+AGG - chr2_4:22129666-22129685 Msa0321080:CDS 40.0%
CTGCTTGCAAGGTATATATG+AGG - chr2_4:22129677-22129696 Msa0321080:CDS 40.0%
ATTTCTCAGGATACTTTCCG+GGG - chr2_4:22129809-22129828 Msa0321080:CDS 40.0%
ACTGAACACCTTTCACAACA+GGG + chr2_4:22129850-22129869 None:intergenic 40.0%
TACTGAACACCTTTCACAAC+AGG + chr2_4:22129851-22129870 None:intergenic 40.0%
!! GTGAAAGGTGTTCAGTATAG+GGG - chr2_4:22129854-22129873 Msa0321080:CDS 40.0%
CTCATATTACACCGACCTAA+CGG + chr2_4:22130162-22130181 None:intergenic 40.0%
ACAGTGACAACCATTTACCT+TGG + chr2_4:22130528-22130547 None:intergenic 40.0%
AAACGTGCTTGTCAATGTGA+TGG - chr2_4:22130710-22130729 Msa0321080:intron 40.0%
AACAACTGCTATGACCACAA+AGG + chr2_4:22130954-22130973 None:intergenic 40.0%
!! AACTTTTAATGGCTCTGCTG+CGG + chr2_4:22131198-22131217 None:intergenic 40.0%
TTACATGGACTCAGAGATCA+TGG - chr2_4:22131286-22131305 Msa0321080:CDS 40.0%
TATGTCACAATACATGCCAC+TGG - chr2_4:22131313-22131332 Msa0321080:CDS 40.0%
!! ACATTATTTTGCTGGTCCAG+TGG + chr2_4:22131332-22131351 None:intergenic 40.0%
TACACATTGCCTTGTCGTAA+AGG + chr2_4:22131374-22131393 None:intergenic 40.0%
ACGTGGATGATACTCTTCAA+CGG + chr2_4:22131551-22131570 None:intergenic 40.0%
AGGATGGTTGAAGGAGTCAT+GGG + chr2_4:22126007-22126026 None:intergenic 45.0%
GGTAAAATGGAAGAGGAGGA+TGG + chr2_4:22126023-22126042 None:intergenic 45.0%
AGTGAGGAAATAGAGGTGGA+AGG + chr2_4:22126263-22126282 None:intergenic 45.0%
TTGCAGTGAGGAAATAGAGG+TGG + chr2_4:22126267-22126286 None:intergenic 45.0%
TATCCTGAGAAAGGCTCTCA+TGG - chr2_4:22126496-22126515 Msa0321080:intron 45.0%
AACAATCGTTACCTTGGCCA+TGG + chr2_4:22126845-22126864 None:intergenic 45.0%
GGTCAGTTTGTAAGGAGGAA+AGG + chr2_4:22127169-22127188 None:intergenic 45.0%
!! TTTGGTTGTTGTCGGTGTCA+CGG - chr2_4:22127491-22127510 Msa0321080:intron 45.0%
GATAACTATGGATTCTCCCG+AGG - chr2_4:22127717-22127736 Msa0321080:intron 45.0%
TCAGCATCTTTGCTTTCCTC+GGG + chr2_4:22127736-22127755 None:intergenic 45.0%
GAGGAAAGCAAAGATGCTGA+AGG - chr2_4:22127736-22127755 Msa0321080:intron 45.0%
CATGCTCAGATTCTTGAGAG+AGG - chr2_4:22127985-22128004 Msa0321080:intron 45.0%
GCAAAATCCTTCTCTGGATC+CGG + chr2_4:22128120-22128139 None:intergenic 45.0%
CCTTCAGCAAAATCCTTCTC+TGG + chr2_4:22128126-22128145 None:intergenic 45.0%
! CCAGAGAAGGATTTTGCTGA+AGG - chr2_4:22128123-22128142 Msa0321080:intron 45.0%
TGCTGAAGGATATGAAGGGA+AGG - chr2_4:22128137-22128156 Msa0321080:intron 45.0%
TCATTCTCCACATCAGCTTC+AGG + chr2_4:22128457-22128476 None:intergenic 45.0%
AGTTGAAATCACAGTCGGAG+AGG + chr2_4:22128898-22128917 None:intergenic 45.0%
GGAGAGAACATCTGTCTTGA+AGG - chr2_4:22129000-22129019 Msa0321080:CDS 45.0%
GTCTTGAAGGCTATATGTGC+TGG - chr2_4:22129013-22129032 Msa0321080:CDS 45.0%
CCTCCACTTAAACAGACTTG+AGG + chr2_4:22129058-22129077 None:intergenic 45.0%
CCTCAAGTCTGTTTAAGTGG+AGG - chr2_4:22129055-22129074 Msa0321080:intron 45.0%
! GCAGTACTGAACTGAACAAG+CGG + chr2_4:22130102-22130121 None:intergenic 45.0%
TAAAAGAGCCACATGGACAG+TGG - chr2_4:22130271-22130290 Msa0321080:intron 45.0%
ACATTCTTGGACTTGGCTCA+AGG - chr2_4:22130471-22130490 Msa0321080:intron 45.0%
AATGGTTGTCACTGTCCAGT+TGG - chr2_4:22130533-22130552 Msa0321080:intron 45.0%
CACTGTCCAGTTGGATTTCA+CGG - chr2_4:22130542-22130561 Msa0321080:intron 45.0%
CTGCAGCTGTAAGAACACTT+GGG - chr2_4:22130733-22130752 Msa0321080:intron 45.0%
TGCAGCTGTAAGAACACTTG+GGG - chr2_4:22130734-22130753 Msa0321080:intron 45.0%
TGGAAAGGTCATTGCCTTTG+TGG - chr2_4:22130937-22130956 Msa0321080:intron 45.0%
TGTGGTCATAGCAGTTGTTG+TGG - chr2_4:22130955-22130974 Msa0321080:intron 45.0%
GTGGTCATAGCAGTTGTTGT+GGG - chr2_4:22130956-22130975 Msa0321080:intron 45.0%
ATTGCCTTGTCGTAAAGGCT+CGG + chr2_4:22131369-22131388 None:intergenic 45.0%
CGTGGATGATACTCTTCAAC+GGG + chr2_4:22131550-22131569 None:intergenic 45.0%
TCATCCACGTGAGAGAAGAT+TGG - chr2_4:22131561-22131580 Msa0321080:five_prime_UTR 45.0%
ATAGCCAATCTTCTCTCACG+TGG + chr2_4:22131568-22131587 None:intergenic 45.0%
GAGGATGGTTGAAGGAGTCA+TGG + chr2_4:22126008-22126027 None:intergenic 50.0%
TGGAAGAGGAGGATGGTTGA+AGG + chr2_4:22126016-22126035 None:intergenic 50.0%
AAGGGTGGACGTGTTGTACA+AGG + chr2_4:22126227-22126246 None:intergenic 50.0%
CAACCATGAGAGCCTTTCTC+AGG + chr2_4:22126502-22126521 None:intergenic 50.0%
CAACGAGGGGTCAGTTTGTA+AGG + chr2_4:22127177-22127196 None:intergenic 50.0%
GTATGGCATGCTCAACTAGC+TGG - chr2_4:22127652-22127671 Msa0321080:CDS 50.0%
GTCAGCCACTAAAACTGCTG+CGG + chr2_4:22127680-22127699 None:intergenic 50.0%
ACCTCACCCTGATAATCGAG+TGG - chr2_4:22127879-22127898 Msa0321080:CDS 50.0%
TCCACTCGATTATCAGGGTG+AGG + chr2_4:22127883-22127902 None:intergenic 50.0%
ACGAACAGCAACGACGAATG+TGG - chr2_4:22127916-22127935 Msa0321080:intron 50.0%
GCTCAGATTCTTGAGAGAGG+TGG - chr2_4:22127988-22128007 Msa0321080:intron 50.0%
CATAGAGTAGCGAACGAGAG+TGG - chr2_4:22128195-22128214 Msa0321080:intron 50.0%
AATCCCACCAAACCCACGAA+CGG + chr2_4:22128221-22128240 None:intergenic 50.0%
TGGTGATCCTGAAGCTGATG+TGG - chr2_4:22128447-22128466 Msa0321080:intron 50.0%
TGTGAGTGCCCTGTTGTGAA+AGG - chr2_4:22129839-22129858 Msa0321080:CDS 50.0%
GGTGTTCAGTATAGGGGTGA+TGG - chr2_4:22129860-22129879 Msa0321080:CDS 50.0%
ATGCGGCTAAAAGAGCCACA+TGG - chr2_4:22130264-22130283 Msa0321080:intron 50.0%
CCAGTTGGATTTCACGGAGA+CGG - chr2_4:22130548-22130567 Msa0321080:intron 50.0%
GCTGCAGCTGTAAGAACACT+TGG - chr2_4:22130732-22130751 Msa0321080:intron 50.0%
ATAGCAGTTGTTGTGGGAGC+TGG - chr2_4:22130962-22130981 Msa0321080:intron 50.0%
GCTACAGAGAATGTGGTCCA+CGG + chr2_4:22131159-22131178 None:intergenic 50.0%
GGCATTCGCTACAGAGAATG+TGG + chr2_4:22131166-22131185 None:intergenic 50.0%
TCTCTGTAGCGAATGCCCAA+TGG - chr2_4:22131169-22131188 Msa0321080:CDS 50.0%
GAATCCGAGCCTTTACGACA+AGG - chr2_4:22131362-22131381 Msa0321080:CDS 50.0%
TACTCTTCAACGGGATCCCT+TGG + chr2_4:22131541-22131560 None:intergenic 50.0%
AAAGCAGGTGAGGAGGAGTT+TGG - chr2_4:22131832-22131851 Msa0321080:intron 50.0%
CGAGGGGTCAGTTTGTAAGG+AGG + chr2_4:22127174-22127193 None:intergenic 55.0%
!! TGGAGCCGCAGCAGTTTTAG+TGG - chr2_4:22127672-22127691 Msa0321080:intron 55.0%
CAGATTGGAGGAGGATCTCG+TGG - chr2_4:22128653-22128672 Msa0321080:CDS 55.0%
GGCACTCACAAACTCTTCCC+CGG + chr2_4:22129829-22129848 None:intergenic 55.0%
ACCACTGACCACTGTCCATG+TGG + chr2_4:22130282-22130301 None:intergenic 55.0%
CCGTCTCCGTGAAATCCAAC+TGG + chr2_4:22130551-22130570 None:intergenic 55.0%
CGGCGGTAATTGCAGTCACA+AGG + chr2_4:22131139-22131158 None:intergenic 55.0%
TGTGACTGCAATTACCGCCG+TGG - chr2_4:22131139-22131158 Msa0321080:CDS 55.0%
ACAGAGAATGTGGTCCACGG+CGG + chr2_4:22131156-22131175 None:intergenic 55.0%
CCACGGAAGATACTGTGCGC+CGG - chr2_4:22128098-22128117 Msa0321080:intron 60.0%
GAACGAGAGTGGCCGTTCGT+GGG - chr2_4:22128206-22128225 Msa0321080:intron 60.0%
AGAGTGGCCGTTCGTGGGTT+TGG - chr2_4:22128211-22128230 Msa0321080:intron 60.0%
! TGGCCGTTCGTGGGTTTGGT+GGG - chr2_4:22128215-22128234 Msa0321080:intron 60.0%
GCCACATGGACAGTGGTCAG+TGG - chr2_4:22130278-22130297 Msa0321080:intron 60.0%
! GTTGTGGGAGCTGGTCTAGC+TGG - chr2_4:22130971-22130990 Msa0321080:intron 60.0%
GCTCTGCTGCGGATGCCATT+GGG + chr2_4:22131187-22131206 None:intergenic 60.0%
CCGGCGCACAGTATCTTCCG+TGG + chr2_4:22128101-22128120 None:intergenic 65.0%
CTGTGCGCCGGATCCAGAGA+AGG - chr2_4:22128110-22128129 Msa0321080:intron 65.0%
CGAACGAGAGTGGCCGTTCG+TGG - chr2_4:22128205-22128224 Msa0321080:intron 65.0%
GTGGCCGTTCGTGGGTTTGG+TGG - chr2_4:22128214-22128233 Msa0321080:intron 65.0%
GGCTCTGCTGCGGATGCCAT+TGG + chr2_4:22131188-22131207 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 22125776 22131941 22125776 ID=Msa0321080;Name=Msa0321080
chr2_4 mRNA 22125776 22131941 22125776 ID=Msa0321080-mRNA-1;Parent=Msa0321080;Name=Msa0321080-mRNA-1;_AED=0.09;_eAED=0.09;_QI=217|0.92|0.92|1|0.84|0.71|14|435|634
chr2_4 exon 22125776 22126201 22125776 ID=Msa0321080-mRNA-1:exon:8151;Parent=Msa0321080-mRNA-1
chr2_4 exon 22126314 22126433 22126314 ID=Msa0321080-mRNA-1:exon:8150;Parent=Msa0321080-mRNA-1
chr2_4 exon 22126696 22126799 22126696 ID=Msa0321080-mRNA-1:exon:8149;Parent=Msa0321080-mRNA-1
chr2_4 exon 22126899 22127027 22126899 ID=Msa0321080-mRNA-1:exon:8148;Parent=Msa0321080-mRNA-1
chr2_4 exon 22127130 22127196 22127130 ID=Msa0321080-mRNA-1:exon:8147;Parent=Msa0321080-mRNA-1
chr2_4 exon 22127581 22127690 22127581 ID=Msa0321080-mRNA-1:exon:8146;Parent=Msa0321080-mRNA-1
chr2_4 exon 22127818 22127899 22127818 ID=Msa0321080-mRNA-1:exon:8145;Parent=Msa0321080-mRNA-1
chr2_4 exon 22128030 22128106 22128030 ID=Msa0321080-mRNA-1:exon:8144;Parent=Msa0321080-mRNA-1
chr2_4 exon 22128641 22128724 22128641 ID=Msa0321080-mRNA-1:exon:8143;Parent=Msa0321080-mRNA-1
chr2_4 exon 22128992 22129061 22128992 ID=Msa0321080-mRNA-1:exon:8142;Parent=Msa0321080-mRNA-1
chr2_4 exon 22129213 22129301 22129213 ID=Msa0321080-mRNA-1:exon:8141;Parent=Msa0321080-mRNA-1
chr2_4 exon 22129393 22130085 22129393 ID=Msa0321080-mRNA-1:exon:8140;Parent=Msa0321080-mRNA-1
chr2_4 exon 22131122 22131594 22131122 ID=Msa0321080-mRNA-1:exon:8139;Parent=Msa0321080-mRNA-1
chr2_4 exon 22131909 22131941 22131909 ID=Msa0321080-mRNA-1:exon:8138;Parent=Msa0321080-mRNA-1
chr2_4 five_prime_UTR 22131909 22131941 22131909 ID=Msa0321080-mRNA-1:five_prime_utr;Parent=Msa0321080-mRNA-1
chr2_4 five_prime_UTR 22131411 22131594 22131411 ID=Msa0321080-mRNA-1:five_prime_utr;Parent=Msa0321080-mRNA-1
chr2_4 CDS 22131122 22131410 22131122 ID=Msa0321080-mRNA-1:cds;Parent=Msa0321080-mRNA-1
chr2_4 CDS 22129393 22130085 22129393 ID=Msa0321080-mRNA-1:cds;Parent=Msa0321080-mRNA-1
chr2_4 CDS 22129213 22129301 22129213 ID=Msa0321080-mRNA-1:cds;Parent=Msa0321080-mRNA-1
chr2_4 CDS 22128992 22129061 22128992 ID=Msa0321080-mRNA-1:cds;Parent=Msa0321080-mRNA-1
chr2_4 CDS 22128641 22128724 22128641 ID=Msa0321080-mRNA-1:cds;Parent=Msa0321080-mRNA-1
chr2_4 CDS 22128030 22128106 22128030 ID=Msa0321080-mRNA-1:cds;Parent=Msa0321080-mRNA-1
chr2_4 CDS 22127818 22127899 22127818 ID=Msa0321080-mRNA-1:cds;Parent=Msa0321080-mRNA-1
chr2_4 CDS 22127581 22127690 22127581 ID=Msa0321080-mRNA-1:cds;Parent=Msa0321080-mRNA-1
chr2_4 CDS 22127130 22127196 22127130 ID=Msa0321080-mRNA-1:cds;Parent=Msa0321080-mRNA-1
chr2_4 CDS 22126899 22127027 22126899 ID=Msa0321080-mRNA-1:cds;Parent=Msa0321080-mRNA-1
chr2_4 CDS 22126696 22126799 22126696 ID=Msa0321080-mRNA-1:cds;Parent=Msa0321080-mRNA-1
chr2_4 CDS 22126323 22126433 22126323 ID=Msa0321080-mRNA-1:cds;Parent=Msa0321080-mRNA-1
chr2_4 three_prime_UTR 22126314 22126322 22126314 ID=Msa0321080-mRNA-1:three_prime_utr;Parent=Msa0321080-mRNA-1
chr2_4 three_prime_UTR 22125776 22126201 22125776 ID=Msa0321080-mRNA-1:three_prime_utr;Parent=Msa0321080-mRNA-1
Gene Sequence

>Msa0321080

ATGAAACCTTGCATGGTTTTTCTCCTTGTCTTGTTCTTTCTTCATAGCAGCTATGTTCAAGGTCGTTTTGTGGTAGAGAAAAACAGCATCACGGTTCTATCACCACATAAACTAAGAGGTAAAAACGATGGTGCTATAGGAAACTTTGGTATTCCAAATTATGGAGGGTATATTGTAGGGTCACTTGTTTATCCTGAGAAAGGCTCTCATGGTTGTCAAGTCTTTGAAGGTGATAAGCCTTTCAAGTTTCAGTCTCATCGTCCTACTATTGTTCTTCTTGATCGTGGAGAGTGTTATTTCGCCTTAAAGGTATGGCATGCTCAACTAGCTGGAGCCGCAGCAGTTTTAGTGGCTGACAGCATTGATGAGTCACTGATAACTATGGATTCTCCCGAGGAAAGCAAAGATGCTGAAGGCTACATAGAGAAGATTGTAATCCCATCAGTATTAGTAGAGAAATCCTTTGGTGATTCATTGAAAGAAGCTTTAAACAACAAAGATGAAGTTTTACTAAGAATAGATTGGAGGGAATCAGTACCTCACCCTGATAATCGAGTGGAATATGAGTTCTGGACGAACAGCAACGACGAATGTGGTGCACGTTGCGATGAACAGATGAATTTTGTGAAGAATTTCAAGGGTCATGCTCAGATTCTTGAGAGAGGTGGATATACATTGTTCACTCCACACTATATAACATGGTTTTGTCCAAAGCCATTTGTTGAAAGCAGTCAGTGCAAGTCTCAATGTATAAACCACGGAAGATACTGTGCGCCGGATCCAGAGAAGGATTTTGCTGAAGGATATGAAGGGAAGGATATAGTGTATGAGAATTTGAGGCAGCTCTGTGTTCATAGAGTAGCGAACGAGAGTGGCCGTTCGTGGGTTTGGTGGGATTATGTGACAGATTTTCATGTTAGATGTTCCATGAAGGAGAAAAAATACAGCAAAGATTGTGCTGAAGTTGTCATGAAATCATTAGATCTTCCTCTTGACAAAATTAAGAAATGTGTTGGTGATCCTGAAGCTGATGTGGAGAATGAAGTGCTAAAGATTGAACAAACATCACAGATTGGAGGAGGATCTCGTGGCGATGTCACCATTTTGCCAACATTGGTTTTAAACAATGTCCAGTATAGAGGAAAATTGGAGAGAACATCTGTCTTGAAGGCTATATGTGCTGGATTTAAGGAGACTACTGAACCTCAAGTCTGTTTAAGTGGAGATATTGAAACTAATGAGTGTCTTGAAAGAAATGGAGGATGCTGGGAAGACAGAAATGCTAATGTAACTGCTTGCAAGGATACTTTCCGGGGAAGAGTTTGTGAGTGCCCTGTTGTGAAAGGTGTTCAGTATAGGGGTGATGGTTATACAACATGTGAAGCTTTCGGACCAGCAAGATGTTCTTTAAACAATGGAGGTTGTTGGTCAGAAACTAGAGATAAAATTACTTTCTCCGCTTGTTCAGTTCAGTACTGCTTAACCAAATCTTCAGAATCCAAGGTAAATGGTTGTCACTGTCCAGTTGGATTTCACGGAGACGGTAATAATAAATGTGAAGATGTTGATGAATGCAAAGAAAAACGTGCTTGTCAATGTGATGGCTGCAGCTGTAAGAACACTTGGGGTAGTTATGATTGTAAGTGCAAAGGAGGTCTTCTATATATGAAGGAACAAGATATGTGTATTGAAAGAAGTGGTTCAAAATTTGGAAAGGTCATTGCCTTTGTGGTCATAGCAGTTGTTGTGGGAGCTGGTCTAGCTGGTTACGTGTTCTACAAGTATAGACTAAGGTCTTACATGGACTCAGAGATCATGGCTATTATGTCACAATACATGCCACTGGACCAGCAAAATAATGTAGTTCATGCTGAATCCGAGCCTTTACGACAAGGCAATGTGTAA

Protein sequence

>Msa0321080

MKPCMVFLLVLFFLHSSYVQGRFVVEKNSITVLSPHKLRGKNDGAIGNFGIPNYGGYIVGSLVYPEKGSHGCQVFEGDKPFKFQSHRPTIVLLDRGECYFALKVWHAQLAGAAAVLVADSIDESLITMDSPEESKDAEGYIEKIVIPSVLVEKSFGDSLKEALNNKDEVLLRIDWRESVPHPDNRVEYEFWTNSNDECGARCDEQMNFVKNFKGHAQILERGGYTLFTPHYITWFCPKPFVESSQCKSQCINHGRYCAPDPEKDFAEGYEGKDIVYENLRQLCVHRVANESGRSWVWWDYVTDFHVRCSMKEKKYSKDCAEVVMKSLDLPLDKIKKCVGDPEADVENEVLKIEQTSQIGGGSRGDVTILPTLVLNNVQYRGKLERTSVLKAICAGFKETTEPQVCLSGDIETNECLERNGGCWEDRNANVTACKDTFRGRVCECPVVKGVQYRGDGYTTCEAFGPARCSLNNGGCWSETRDKITFSACSVQYCLTKSSESKVNGCHCPVGFHGDGNNKCEDVDECKEKRACQCDGCSCKNTWGSYDCKCKGGLLYMKEQDMCIERSGSKFGKVIAFVVIAVVVGAGLAGYVFYKYRLRSYMDSEIMAIMSQYMPLDQQNNVVHAESEPLRQGNV*