AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1191060

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1191060 MtrunA17_Chr8g0360521 97.362 417 11 0 1 417 1 417 0.0 852
Msa1191060 MtrunA17_Chr3g0113671 50.704 355 166 4 60 409 99 449 4.52e-130 382
Msa1191060 MtrunA17_Chr5g0437601 49.857 349 170 3 66 410 78 425 1.45e-129 380
Msa1191060 MtrunA17_Chr4g0005491 46.883 401 192 7 18 410 21 408 4.40e-127 373
Msa1191060 MtrunA17_Chr4g0006991 48.725 353 173 3 64 409 76 427 1.06e-126 372
Msa1191060 MtrunA17_Chr7g0242701 49.008 353 172 3 64 409 76 427 2.75e-124 366
Msa1191060 MtrunA17_Chr3g0114101 49.709 344 168 3 71 410 89 431 5.81e-124 366
Msa1191060 MtrunA17_Chr4g0005481 49.123 342 172 2 69 409 106 446 7.49e-123 363
Msa1191060 MtrunA17_Chr7g0243301 43.902 410 208 8 12 410 12 410 9.64e-120 354
Msa1191060 MtrunA17_Chr5g0437291 46.000 350 181 4 69 410 163 512 1.69e-115 347
Msa1191060 MtrunA17_Chr1g0171171 42.566 343 173 9 71 409 53 375 4.47e-85 264
Msa1191060 MtrunA17_Chr1g0210771 39.766 342 185 9 71 409 59 382 1.59e-82 258
Msa1191060 MtrunA17_Chr3g0105301 38.329 347 195 6 71 410 43 377 8.26e-82 256
Msa1191060 MtrunA17_Chr3g0097891 37.249 349 186 7 68 409 28 350 1.67e-78 246
Msa1191060 MtrunA17_Chr5g0430371 35.165 364 209 8 62 410 49 400 1.91e-77 245
Msa1191060 MtrunA17_Chr7g0258851 35.876 354 200 8 71 410 248 588 5.27e-75 244
Msa1191060 MtrunA17_Chr4g0068111 34.699 366 200 8 71 416 114 460 1.14e-74 240
Msa1191060 MtrunA17_Chr1g0175671 35.593 354 201 8 71 410 170 510 1.49e-74 241
Msa1191060 MtrunA17_Chr2g0314801 37.830 341 184 8 71 406 33 350 4.58e-74 235
Msa1191060 MtrunA17_Chr7g0259711 36.639 363 193 12 69 411 89 434 1.55e-73 237
Msa1191060 MtrunA17_Chr4g0041011 35.714 350 189 10 67 409 43 363 3.17e-73 233
Msa1191060 MtrunA17_Chr5g0413271 35.457 361 204 8 62 411 136 478 3.56e-73 237
Msa1191060 MtrunA17_Chr2g0287901 39.726 365 186 14 65 411 91 439 3.75e-73 236
Msa1191060 MtrunA17_Chr3g0085081 37.464 347 184 8 69 409 29 348 6.01e-73 232
Msa1191060 MtrunA17_Chr4g0071391 35.613 351 201 11 71 409 109 446 1.04e-72 235
Msa1191060 MtrunA17_Chr3g0091031 37.143 350 187 8 64 407 24 346 7.24e-72 229
Msa1191060 MtrunA17_Chr2g0283581 36.176 387 210 10 27 409 5 358 5.20e-71 228
Msa1191060 MtrunA17_Chr7g0269991 34.734 357 189 10 71 409 137 467 2.86e-70 229
Msa1191060 MtrunA17_Chr2g0325481 35.897 351 195 10 64 410 43 367 3.36e-70 226
Msa1191060 MtrunA17_Chr4g0045941 35.072 345 197 8 68 409 30 350 1.01e-68 221
Msa1191060 MtrunA17_Chr5g0413851 34.483 406 213 10 14 412 3 362 1.41e-68 221
Msa1191060 MtrunA17_Chr1g0213281 32.044 362 226 9 60 410 164 516 1.08e-67 224
Msa1191060 MtrunA17_Chr3g0085071 35.244 349 195 8 64 407 39 361 5.33e-67 217
Msa1191060 MtrunA17_Chr4g0045951 35.028 354 201 9 61 409 33 362 3.05e-66 215
Msa1191060 MtrunA17_Chr2g0314791 32.773 357 196 10 67 412 25 348 1.85e-64 210
Msa1191060 MtrunA17_Chr8g0368461 32.973 370 206 10 69 411 176 530 1.14e-62 211
Msa1191060 MtrunA17_Chr3g0126021 32.249 369 210 9 59 411 117 461 4.85e-61 204
Msa1191060 MtrunA17_Chr8g0384151 32.231 363 208 10 65 414 84 421 8.52e-59 198
Msa1191060 MtrunA17_Chr1g0209921 34.783 230 140 6 71 297 44 266 6.83e-49 167
Msa1191060 MtrunA17_Chr1g0178081 30.000 360 178 9 69 417 53 349 6.20e-46 162
Msa1191060 MtrunA17_Chr6g0476041 28.421 380 219 12 67 415 163 520 6.05e-45 163
Msa1191060 MtrunA17_Chr1g0188191 28.496 379 224 15 67 417 230 589 8.24e-44 161
Msa1191060 MtrunA17_Chr6g0456691 28.404 426 243 15 14 409 26 419 4.59e-41 150
Msa1191060 MtrunA17_Chr8g0391481 28.723 376 222 11 68 417 24 379 5.50e-41 149
Msa1191060 MtrunA17_Chr8g0347321 29.444 360 218 13 71 409 95 439 6.23e-41 150
Msa1191060 MtrunA17_Chr7g0226991 28.689 366 232 13 64 411 50 404 6.77e-41 149
Msa1191060 MtrunA17_Chr6g0456681 27.528 356 226 11 69 405 62 404 1.69e-38 143
Msa1191060 MtrunA17_Chr2g0283851 29.917 361 206 16 72 405 56 396 4.13e-38 142
Msa1191060 MtrunA17_Chr5g0414051 28.267 375 214 14 68 411 72 422 6.33e-38 142
Msa1191060 MtrunA17_Chr5g0414091 27.123 424 241 17 18 405 36 427 7.46e-38 142
Msa1191060 MtrunA17_Chr8g0384421 28.926 363 215 12 69 409 131 472 7.46e-38 142
Msa1191060 MtrunA17_Chr3g0140371 27.520 367 224 11 68 411 15 362 7.47e-38 140
Msa1191060 MtrunA17_Chr4g0049421 28.226 372 223 16 71 417 48 400 7.15e-36 136
Msa1191060 MtrunA17_Chr5g0414061 28.686 373 208 12 71 411 94 440 2.79e-35 135
Msa1191060 MtrunA17_Chr8g0387921 29.121 364 207 16 71 405 74 415 4.40e-35 134
Msa1191060 MtrunA17_Chr5g0414041 27.273 363 228 10 71 411 87 435 9.36e-34 131
Msa1191060 MtrunA17_Chr4g0070341 27.749 382 195 16 69 409 130 471 5.47e-33 129
Msa1191060 MtrunA17_Chr6g0455901 26.005 373 219 15 69 409 69 416 3.03e-29 118
Msa1191060 MtrunA17_Chr6g0451321 23.978 367 238 13 65 409 110 457 1.39e-27 114
Msa1191060 MtrunA17_Chr7g0221271 33.939 165 105 3 1 163 8 170 2.10e-26 105
Msa1191060 MtrunA17_Chr7g0221291 33.333 165 106 3 1 163 8 170 3.82e-25 100
Msa1191060 MtrunA17_Chr2g0287911 56.140 57 17 2 71 127 61 109 1.03e-16 75.5
Msa1191060 MtrunA17_Chr2g0287931 32.540 126 76 3 132 249 2 126 2.40e-15 72.4
Msa1191060 MtrunA17_Chr3g0085101 37.736 106 58 2 265 367 6 106 4.20e-15 71.2
Msa1191060 MtrunA17_Chr5g0429191 61.224 49 13 2 355 402 2 45 2.69e-12 61.2
Msa1191060 MtrunA17_Chr1g0209931 34.286 105 52 2 308 412 8 95 3.80e-12 62.4
Msa1191060 MtrunA17_Chr7g0221281 22.222 243 149 7 185 405 8 232 3.65e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1191060 AT1G73140.1 69.471 416 122 2 2 416 1 412 0.0 616
Msa1191060 AT5G01360.2 49.587 363 176 2 54 409 16 378 8.11e-134 389
Msa1191060 AT5G01360.1 49.587 363 176 2 54 409 72 434 2.65e-133 390
Msa1191060 AT2G40150.1 49.861 361 166 3 60 409 64 420 3.27e-131 384
Msa1191060 AT3G55990.1 50.432 347 167 2 69 410 138 484 1.48e-130 385
Msa1191060 AT2G40320.1 48.711 349 174 2 66 410 76 423 9.05e-124 365
Msa1191060 AT3G11030.1 48.571 350 174 4 66 410 101 449 2.37e-120 357
Msa1191060 AT5G01620.2 46.398 347 177 4 68 409 107 449 1.91e-119 355
Msa1191060 AT5G01620.1 46.398 347 177 4 68 409 107 449 1.91e-119 355
Msa1191060 AT5G01620.3 46.398 347 177 4 68 409 115 457 2.83e-119 355
Msa1191060 AT2G40160.1 41.608 423 230 5 4 409 1 423 3.29e-117 348
Msa1191060 AT2G40160.2 41.509 424 231 5 4 410 1 424 5.24e-117 348
Msa1191060 AT2G38320.1 43.868 424 204 8 1 413 8 408 1.08e-116 347
Msa1191060 AT2G38320.2 46.483 327 164 5 96 413 1 325 1.18e-99 300
Msa1191060 AT3G54260.1 39.710 345 187 7 71 412 51 377 1.27e-82 258
Msa1191060 AT2G30900.1 38.040 347 185 10 71 410 43 366 1.96e-80 252
Msa1191060 AT3G62390.1 37.500 360 193 11 64 410 132 472 3.24e-79 253
Msa1191060 AT2G40160.3 40.514 311 169 4 4 298 1 311 4.62e-79 247
Msa1191060 AT5G20590.1 36.441 354 199 9 70 410 140 480 9.58e-79 251
Msa1191060 AT5G58600.1 36.599 347 202 6 71 410 66 401 3.43e-77 245
Msa1191060 AT3G12060.1 37.079 356 197 8 69 410 194 536 5.28e-77 249
Msa1191060 AT1G78710.1 35.465 344 194 9 71 410 38 357 4.94e-76 241
Msa1191060 AT1G29050.1 35.262 363 205 8 50 409 43 378 6.91e-75 238
Msa1191060 AT2G31110.2 38.304 342 184 8 71 409 45 362 2.62e-74 236
Msa1191060 AT5G06700.1 37.110 353 199 10 69 409 253 594 9.15e-74 242
Msa1191060 AT2G34070.1 34.278 353 204 7 61 409 55 383 1.32e-73 235
Msa1191060 AT5G49340.1 36.915 363 186 10 71 410 100 442 2.75e-73 237
Msa1191060 AT3G06080.2 36.975 357 199 8 70 411 102 447 1.68e-72 235
Msa1191060 AT1G60790.1 33.938 386 216 12 52 411 162 534 6.59e-69 228
Msa1191060 AT2G30010.1 33.867 375 208 10 56 410 43 397 7.93e-69 223
Msa1191060 AT2G42570.1 36.919 344 188 8 71 410 47 365 1.08e-68 222
Msa1191060 AT2G30010.2 33.867 375 208 10 56 410 86 440 1.40e-68 224
Msa1191060 AT3G14850.2 34.582 347 201 8 69 411 32 356 3.15e-68 220
Msa1191060 AT5G19160.1 34.239 368 208 10 70 417 98 451 3.78e-68 223
Msa1191060 AT5G06230.2 35.150 367 206 9 67 414 17 370 9.53e-58 194
Msa1191060 AT1G48880.1 32.113 355 199 13 71 411 115 441 1.30e-57 195
Msa1191060 AT5G06230.1 35.150 367 206 9 67 414 58 411 2.36e-57 194
Msa1191060 AT1G78710.2 30.294 340 164 8 71 410 31 297 3.94e-56 187
Msa1191060 AT3G11570.1 33.913 345 183 12 93 414 103 425 2.76e-52 181
Msa1191060 AT3G62390.2 36.842 247 142 7 64 300 132 374 1.68e-51 178
Msa1191060 AT2G30900.2 38.496 226 124 7 71 290 43 259 4.07e-51 173
Msa1191060 AT5G20590.2 35.833 240 141 5 70 298 140 377 6.93e-51 176
Msa1191060 AT2G31110.3 38.222 225 128 4 71 292 45 261 1.45e-50 172
Msa1191060 AT3G06080.1 36.402 239 141 4 70 298 102 339 2.59e-48 168
Msa1191060 AT5G19160.2 34.728 239 145 4 70 298 98 335 3.60e-48 168
Msa1191060 AT5G58600.2 35.931 231 137 4 71 297 66 289 7.35e-48 165
Msa1191060 AT2G34070.2 32.353 272 157 6 142 409 1 249 4.47e-46 159
Msa1191060 AT5G64020.1 30.518 367 212 13 71 409 57 408 6.27e-43 155
Msa1191060 AT5G51640.1 27.907 387 221 13 64 415 131 494 8.22e-43 157
Msa1191060 AT4G25360.1 27.569 399 228 14 58 417 156 532 1.65e-42 157
Msa1191060 AT4G25360.2 27.569 399 228 14 58 417 156 532 1.65e-42 157
Msa1191060 AT5G64470.3 29.201 363 220 15 71 414 55 399 3.15e-42 153
Msa1191060 AT1G70230.1 26.912 353 228 11 71 411 79 413 3.11e-41 151
Msa1191060 AT3G14850.1 31.752 274 162 7 142 411 1 253 1.47e-40 145
Msa1191060 AT3G02440.1 28.531 354 218 11 71 405 127 464 2.06e-40 150
Msa1191060 AT3G02440.2 28.531 354 218 11 71 405 135 472 2.14e-40 150
Msa1191060 AT5G15890.1 28.307 378 228 10 50 405 162 518 1.34e-39 149
Msa1191060 AT5G20680.6 28.534 382 192 14 69 409 116 457 2.02e-38 144
Msa1191060 AT2G37720.1 29.787 376 191 16 71 409 143 482 2.13e-38 145
Msa1191060 AT5G64470.2 28.726 369 220 17 71 414 55 405 2.46e-38 143
Msa1191060 AT2G14530.1 27.989 368 213 12 71 409 62 406 3.96e-38 142
Msa1191060 AT5G20680.2 28.534 382 192 14 69 409 192 533 4.70e-38 144
Msa1191060 AT5G20680.4 28.534 382 192 14 69 409 210 551 5.22e-38 144
Msa1191060 AT5G20680.1 28.534 382 192 14 69 409 210 551 5.22e-38 144
Msa1191060 AT5G20680.3 28.534 382 192 14 69 409 210 551 5.22e-38 144
Msa1191060 AT5G20680.5 28.534 382 192 14 69 409 210 551 5.22e-38 144
Msa1191060 AT4G23790.1 26.711 453 244 21 6 405 6 423 1.81e-37 141
Msa1191060 AT1G01430.1 26.250 400 259 12 34 410 62 448 5.51e-37 140
Msa1191060 AT5G06230.3 34.538 249 142 6 67 297 58 303 1.54e-36 136
Msa1191060 AT5G15900.1 28.255 361 223 11 69 409 65 409 1.12e-35 136
Msa1191060 AT5G15900.2 28.255 361 223 11 69 409 84 428 1.12e-35 136
Msa1191060 AT4G11090.1 26.075 372 227 13 62 405 70 421 3.73e-35 135
Msa1191060 AT4G01080.1 26.503 366 224 13 63 405 83 426 8.09e-35 134
Msa1191060 AT3G28150.1 29.223 373 208 16 66 409 65 410 2.00e-34 132
Msa1191060 AT2G31110.1 35.345 232 124 7 181 409 6 214 1.15e-33 125
Msa1191060 AT5G64470.4 26.506 249 162 10 71 303 55 298 1.73e-21 94.7
Msa1191060 AT5G64470.1 26.908 249 161 10 71 303 55 298 1.77e-21 95.1

Find 138 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGCAATCAGCAAAAGATTT+TGG 0.125911 8_1:-34839981 None:intergenic
AGAAGTGAATACAATATAAT+TGG 0.171993 8_1:-34837804 None:intergenic
AGGATTTCATTCCATGTATC+TGG 0.201338 8_1:-34840026 None:intergenic
GATGCTCACACCTCAGTTTA+TGG 0.206651 8_1:+34839915 Msa1191060:CDS
AACAAAAGAATGATGTTTAT+TGG 0.212670 8_1:+34838315 Msa1191060:CDS
CTGATTCTTTCTACACAAAT+TGG 0.216029 8_1:+34838078 Msa1191060:CDS
CAATACAAGGTTCGTCATAT+TGG 0.230048 8_1:+34839784 Msa1191060:CDS
TAGCTCTCTGTTCTTTAGTT+AGG 0.246525 8_1:-34839956 None:intergenic
TGGAGGGATTTCTTTCCTTC+AGG 0.275411 8_1:-34838396 None:intergenic
TCTTCATAGGTGGAATTCTT+TGG 0.275642 8_1:-34838416 None:intergenic
CTGTCGTGACGTTATATTCT+TGG 0.282711 8_1:-34839196 None:intergenic
AATACAAGGTTCGTCATATT+GGG 0.282741 8_1:+34839785 Msa1191060:CDS
CCTTATACGATCTAAGCTTT+TGG 0.289384 8_1:+34841014 Msa1191060:intron
TTGGCAAGGAGTGGACATTT+TGG 0.310618 8_1:+34838908 Msa1191060:CDS
GCAATGTATTTGAAGGGAAA+TGG 0.312090 8_1:+34837967 Msa1191060:CDS
TGCATTCACTGGTGTTTACC+TGG 0.316704 8_1:+34839999 Msa1191060:CDS
AACAGATCATAGACTCAAAT+TGG 0.319491 8_1:-34838356 None:intergenic
GCTTGCTCTTCAAGCTATCT+AGG 0.322912 8_1:-34837851 None:intergenic
ATACTACTGGGCTCCATTCA+TGG 0.353905 8_1:+34838800 Msa1191060:CDS
CGTTGAGTTCACGTATGTTC+TGG 0.354464 8_1:+34840481 Msa1191060:three_prime_UTR
TCAACTTTAAATATCTTCAT+AGG 0.360087 8_1:-34838429 None:intergenic
ATATAATTGGGAAAATTGAT+TGG 0.370417 8_1:-34837791 None:intergenic
CAATGTATTTGAAGGGAAAT+GGG 0.374415 8_1:+34837968 Msa1191060:CDS
TGCCGAAAATTATATTGTTT+AGG 0.375449 8_1:-34840327 None:intergenic
CAGCTCTACGGCATGTCATC+TGG 0.379386 8_1:+34837888 Msa1191060:CDS
TTATATTCTTGGACTTCATC+TGG 0.380050 8_1:-34839185 None:intergenic
TAACTTACCACAAATGTGTT+GGG 0.386349 8_1:-34839307 None:intergenic
ATGCATCGATTGAATACTAC+TGG 0.392477 8_1:+34838787 Msa1191060:CDS
ATTTGAGTCTATGATCTGTT+TGG 0.397442 8_1:+34838359 Msa1191060:CDS
ATAATTGGGTGATGTTCAAT+AGG 0.397627 8_1:-34839878 None:intergenic
CAATATGACGAACCTTGTAT+TGG 0.400765 8_1:-34839783 None:intergenic
AGTATGAACAACTAGCAATA+TGG 0.407962 8_1:-34840565 Msa1191070:CDS
GTGGTCTGCTTGACCAAGTA+AGG 0.408960 8_1:-34838035 None:intergenic
TTTAGGTTTCCATGAAGAAC+AGG 0.415460 8_1:-34840310 None:intergenic
AGAAGTGAGTTGCCCTTACT+TGG 0.416247 8_1:+34838022 Msa1191060:CDS
ACGCTCTATTAAATTAAAGT+TGG 0.428012 8_1:-34841125 Msa1191070:CDS
TGGTGGAAGGAATCGATTAC+CGG 0.428048 8_1:+34837908 Msa1191060:CDS
AGGCTAAAATCATAAACTAT+AGG 0.429225 8_1:-34840290 None:intergenic
CAAATCATACGGTACATAAA+CGG 0.437106 8_1:+34838847 Msa1191060:CDS
CAATTTGTGTAGAAAGAATC+AGG 0.437639 8_1:-34838077 None:intergenic
ATTACCGGTTGTTGTGTTGC+CGG 0.437991 8_1:+34837923 Msa1191060:CDS
TCTTAAACAGATATGCATAT+AGG 0.438576 8_1:-34840046 None:intergenic
GAAGTGAATACAATATAATT+GGG 0.442470 8_1:-34837803 None:intergenic
GAACAACTAGCAATATGGTT+TGG 0.449984 8_1:-34840560 Msa1191070:CDS
GAAATTGATTCAACCATGAA+TGG 0.451055 8_1:-34838813 None:intergenic
TTGGGAAAATTGATTGGATC+CGG 0.452959 8_1:-34837785 None:intergenic
AATATGACGAACCTTGTATT+GGG 0.455104 8_1:-34839782 None:intergenic
ACAAGCATCATTCAGATTGA+TGG 0.455770 8_1:+34840116 Msa1191060:three_prime_UTR
CCCTCCTCAATGCGATCCTC+CGG 0.457796 8_1:-34837942 None:intergenic
TATTTGAAGGGAAATGGGTA+TGG 0.465084 8_1:+34837973 Msa1191060:CDS
TTCTAATCTTTGCAGTTACA+AGG 0.466052 8_1:+34837823 Msa1191060:CDS
CAGACCACTTGCATGAAGAA+TGG 0.466368 8_1:+34838050 Msa1191060:CDS
TCCTCCGGCAACACAACAAC+CGG 0.467189 8_1:-34837927 None:intergenic
GAGGGTTGCAATGTATTTGA+AGG 0.469336 8_1:+34837960 Msa1191060:CDS
GCATTCACTGGTGTTTACCT+GGG 0.470418 8_1:+34840000 Msa1191060:CDS
CTCACGTAGCATTGATGAAA+GGG 0.471007 8_1:-34838962 None:intergenic
CTCTATTAAATTAAAGTTGG+AGG 0.475359 8_1:-34841122 Msa1191070:CDS
AGACCACTTGCATGAAGAAT+GGG 0.475855 8_1:+34838051 Msa1191060:CDS
AGGAGCTGGGAATGGAAGCC+AGG 0.483811 8_1:+34839729 Msa1191060:intron
GGAGATGCTGATATCGAGCC+AGG 0.490893 8_1:-34840539 Msa1191070:CDS
ATCCAAAAGGCAAAAGGTGT+TGG 0.491457 8_1:-34840191 None:intergenic
CATAGGTGGAATTCTTTGGA+GGG 0.491727 8_1:-34838412 None:intergenic
CGGTATATTTGTGAATGATC+GGG 0.491737 8_1:-34841062 Msa1191070:CDS
CTCAGTTTATGGCGAGCGAA+AGG 0.496603 8_1:+34839926 Msa1191060:CDS
GCGGTATATTTGTGAATGAT+CGG 0.497341 8_1:-34841063 Msa1191070:CDS
ATTCTTTCTACACAAATTGG+AGG 0.504866 8_1:+34838081 Msa1191060:CDS
GTATGTCCCCAACACATTTG+TGG 0.505067 8_1:+34839300 Msa1191060:CDS
CATGGGACAGAAAAGACTCC+AGG 0.506317 8_1:-34840621 Msa1191070:intron
CATTGATATGAGATGGTTGA+AGG 0.506584 8_1:-34837736 None:intergenic
GCCGGAGGATCGCATTGAGG+AGG 0.515226 8_1:+34837941 Msa1191060:CDS
TCTTCTCCAGGAGCTGGGAA+TGG 0.516727 8_1:+34839721 Msa1191060:intron
CAACTCACTTCTTCATAAAG+AGG 0.520659 8_1:-34838011 None:intergenic
TATACAATCCAAAAGGCAAA+AGG 0.521640 8_1:-34840197 None:intergenic
TCATAGGTGGAATTCTTTGG+AGG 0.523486 8_1:-34838413 None:intergenic
GGATTTCATTCCATGTATCT+GGG 0.524709 8_1:-34840025 None:intergenic
GAAAAGAAAGCAAAATAGAA+TGG 0.525233 8_1:-34840169 None:intergenic
GTAACTTACCACAAATGTGT+TGG 0.530098 8_1:-34839308 None:intergenic
TACCTGGGGTCCCAGATACA+TGG 0.530934 8_1:+34840015 Msa1191060:CDS
AATTGGAGGTGGCAGCCTCA+TGG 0.531507 8_1:+34838095 Msa1191060:CDS
GTTGCAAATGTACATGTCAA+AGG 0.533678 8_1:-34840360 None:intergenic
TTCCATGTATCTGGGACCCC+AGG 0.534611 8_1:-34840017 None:intergenic
GGTTCGTCATATTGGGGCAC+AGG 0.534995 8_1:+34839792 Msa1191060:CDS
TCAGTTTATGGCGAGCGAAA+GGG 0.538195 8_1:+34839927 Msa1191060:CDS
TCTTCGAAGAGAATGCATCC+TGG 0.541502 8_1:+34840603 Msa1191060:three_prime_UTR
GTTCTGTTATACAATCCAAA+AGG 0.542969 8_1:-34840204 None:intergenic
GAATTAAATCGTCTGAGAGT+TGG 0.543056 8_1:+34840503 Msa1191060:three_prime_UTR
TGTTCGAGAGCTATGTTTGG+TGG 0.543784 8_1:+34838931 Msa1191060:CDS
CATTCACTGGTGTTTACCTG+GGG 0.545869 8_1:+34840001 Msa1191060:CDS
TGGTGTTCGAGAGCTATGTT+TGG 0.547200 8_1:+34838928 Msa1191060:CDS
CTTTCTACACAAATTGGAGG+TGG 0.550918 8_1:+34838084 Msa1191060:CDS
GTACAATCTGTAATTCCTGA+AGG 0.559209 8_1:+34838381 Msa1191060:CDS
TCTCCCATTCTTCATGCAAG+TGG 0.561570 8_1:-34838054 None:intergenic
TATGAAGATATTTAAAGTTG+AGG 0.563429 8_1:+34838431 Msa1191060:CDS
ATGCATTCTCTTCGAAGAAG+AGG 0.567019 8_1:-34840598 Msa1191070:CDS
AGCAAGCTTCTGAAACTGAG+TGG 0.568778 8_1:-34840445 Msa1191070:CDS
TAATTGGGTGATGTTCAATA+GGG 0.568867 8_1:-34839877 None:intergenic
TTAAATCGTCTGAGAGTTGG+TGG 0.569032 8_1:+34840506 Msa1191060:three_prime_UTR
CCGGAGGATCGCATTGAGGA+GGG 0.569780 8_1:+34837942 Msa1191060:CDS
ACTCACGTAGCATTGATGAA+AGG 0.570089 8_1:-34838963 None:intergenic
AACATGTGCAACAACTTCAA+AGG 0.571932 8_1:-34838288 None:intergenic
TAAATAAAACACAAATGTTG+TGG 0.572067 8_1:-34840391 None:intergenic
TAGCTAAGCATGGCAAACAT+TGG 0.579693 8_1:+34838889 Msa1191060:CDS
ATTTGAAGGGAAATGGGTAT+GGG 0.582984 8_1:+34837974 Msa1191060:CDS
GCAAGCTTCTGAAACTGAGT+GGG 0.583735 8_1:-34840444 Msa1191070:CDS
TGAAGTTGTTGCACATGTTG+AGG 0.585215 8_1:+34838292 Msa1191060:CDS
CTCATGGATGCAACCTCCCA+AGG 0.585468 8_1:+34838111 Msa1191060:CDS
CGTCACGACAGCATATAAGT+TGG 0.586816 8_1:+34839208 Msa1191060:CDS
AGGGTTGCAATGTATTTGAA+GGG 0.588210 8_1:+34837961 Msa1191060:CDS
TCAAGTCTTCGATTGATCGC+CGG 0.588728 8_1:+34837766 Msa1191060:CDS
TTCGAAGAAGAGGTTAGCAA+AGG 0.592548 8_1:-34840588 Msa1191070:CDS
ACTTTAAATATCTTCATAGG+TGG 0.594287 8_1:-34838426 None:intergenic
TGATCATGCAACAAATCATA+CGG 0.594915 8_1:+34838836 Msa1191060:CDS
AACTTACCACAAATGTGTTG+GGG 0.596950 8_1:-34839306 None:intergenic
GCAAATGTACATGTCAAAGG+TGG 0.597773 8_1:-34840357 None:intergenic
ACCGGTTGTTGTGTTGCCGG+AGG 0.598806 8_1:+34837926 Msa1191060:CDS
TGGCAAACATTGGCAAGGAG+TGG 0.599503 8_1:+34838899 Msa1191060:CDS
ATTGGAGACTCATTACAAAG+AGG 0.601036 8_1:+34838333 Msa1191060:CDS
ACGGCATGTCATCTGGTGGA+AGG 0.604816 8_1:+34837895 Msa1191060:CDS
CACTTCTTCATAAAGAGGAT+AGG 0.612582 8_1:-34838006 None:intergenic
CTTGACTCAATAGCTAAGCA+TGG 0.612907 8_1:+34838879 Msa1191060:CDS
CTCTACGGCATGTCATCTGG+TGG 0.613992 8_1:+34837891 Msa1191060:CDS
AGCATCATTCAGATTGATGG+TGG 0.614413 8_1:+34840119 Msa1191060:three_prime_UTR
TGTTGTAAATAATAATCAAG+TGG 0.615423 8_1:-34840418 None:intergenic
GTTGCCGGAGGATCGCATTG+AGG 0.623555 8_1:+34837938 Msa1191060:CDS
TCATACGGTACATAAACGGA+TGG 0.623999 8_1:+34838851 Msa1191060:CDS
AATGAATCATACCCAATACA+AGG 0.626400 8_1:+34839771 Msa1191060:CDS
AAAGTGTTGGCTACCTTGGG+AGG 0.628073 8_1:-34838124 None:intergenic
GTTGGTGGTAAATCTTGACC+TGG 0.628676 8_1:+34840521 Msa1191060:three_prime_UTR
CTTGGGAGGTTGCATCCATG+AGG 0.629461 8_1:-34838110 None:intergenic
CAAATGTACATGTCAAAGGT+GGG 0.631598 8_1:-34840356 None:intergenic
GAGATACAAACTGTAAACAA+AGG 0.634145 8_1:+34840250 Msa1191060:three_prime_UTR
TGCATCGATTGAATACTACT+GGG 0.637341 8_1:+34838788 Msa1191060:CDS
AAGCATGGCAAACATTGGCA+AGG 0.639024 8_1:+34838894 Msa1191060:CDS
GAGACAGCATTGATATGAGA+TGG 0.642148 8_1:-34837743 None:intergenic
TGGTCTGCTTGACCAAGTAA+GGG 0.642359 8_1:-34838034 None:intergenic
GATACAAAGCGTGAAGATAG+CGG 0.644538 8_1:-34841082 Msa1191070:CDS
ATACAAGGTTCGTCATATTG+GGG 0.647384 8_1:+34839786 Msa1191060:CDS
CTTTCGCTCGCCATAAACTG+AGG 0.649074 8_1:-34839925 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTTTAAGTTCACAAT+CGG - chr8_1:34838187-34838206 None:intergenic 15.0%
!! TAATAACTCTAGTTATTATT+AGG - chr8_1:34839497-34839516 None:intergenic 15.0%
!!! AAATTCGATTTTTTATTTTC+TGG + chr8_1:34839658-34839677 Msa1191060:intron 15.0%
!!! AACCTAAACAATATAATTTT+CGG + chr8_1:34840325-34840344 Msa1191060:three_prime_UTR 15.0%
!!! CTTGAATTTTATTCAAAAAA+TGG - chr8_1:34840730-34840749 Msa1191070:intron 15.0%
!!! CATTTTTTGAATAAAATTCA+AGG + chr8_1:34840728-34840747 Msa1191060:intron 15.0%
!!! CTATTTTAGTTGTTTTTTTT+TGG + chr8_1:34840810-34840829 Msa1191060:intron 15.0%
!! AGTTAAGTTATTCTATATAT+TGG - chr8_1:34840947-34840966 Msa1191070:intron 15.0%
!! ATATAATTGGGAAAATTGAT+TGG - chr8_1:34837794-34837813 None:intergenic 20.0%
!! GAAGTGAATACAATATAATT+GGG - chr8_1:34837806-34837825 None:intergenic 20.0%
!! AGAAGTGAATACAATATAAT+TGG - chr8_1:34837807-34837826 None:intergenic 20.0%
!! AACAAAAGAATGATGTTTAT+TGG + chr8_1:34838315-34838334 Msa1191060:CDS 20.0%
!! TCAACTTTAAATATCTTCAT+AGG - chr8_1:34838432-34838451 None:intergenic 20.0%
!!! TATGAAGATATTTAAAGTTG+AGG + chr8_1:34838431-34838450 Msa1191060:CDS 20.0%
!! TTAAGTTATTTATGAAAGCA+TGG - chr8_1:34838500-34838519 None:intergenic 20.0%
!! AATCAGACAAATTATTGAAT+TGG + chr8_1:34839130-34839149 Msa1191060:intron 20.0%
!!! ATTATCAAGTTTTGCTAATA+AGG + chr8_1:34839367-34839386 Msa1191060:intron 20.0%
!!! TATCAAAACTTTTCTTAACA+TGG + chr8_1:34840071-34840090 Msa1191060:exon 20.0%
!! TAAATAAAACACAAATGTTG+TGG - chr8_1:34840394-34840413 None:intergenic 20.0%
!! TGTTGTAAATAATAATCAAG+TGG - chr8_1:34840421-34840440 None:intergenic 20.0%
! ACTTTAAATATCTTCATAGG+TGG - chr8_1:34838429-34838448 None:intergenic 25.0%
! GACATAAATATTTGTGAGAT+TGG - chr8_1:34838615-34838634 None:intergenic 25.0%
!!! AAATTCCTATAGCTTTGTTT+TGG + chr8_1:34838754-34838773 Msa1191060:intron 25.0%
!! AAAAATACATTTTGAGCAAG+TGG - chr8_1:34839275-34839294 None:intergenic 25.0%
! GAAGAGAGATGTTAATTATT+AGG - chr8_1:34839578-34839597 None:intergenic 25.0%
!!! AAGAATTTATTTTCTTCTCC+AGG + chr8_1:34839709-34839728 Msa1191060:intron 25.0%
!! TTTTCTGTACTCTGATAATT+GGG - chr8_1:34839895-34839914 None:intergenic 25.0%
! TCTTAAACAGATATGCATAT+AGG - chr8_1:34840049-34840068 None:intergenic 25.0%
! GAAAAGAAAGCAAAATAGAA+TGG - chr8_1:34840172-34840191 None:intergenic 25.0%
! AGGCTAAAATCATAAACTAT+AGG - chr8_1:34840293-34840312 None:intergenic 25.0%
! TGCCGAAAATTATATTGTTT+AGG - chr8_1:34840330-34840349 None:intergenic 25.0%
! CATTTAGTAGAAAAGACTAA+TGG + chr8_1:34840987-34841006 Msa1191060:intron 25.0%
! CTCTATTAAATTAAAGTTGG+AGG - chr8_1:34841125-34841144 Msa1191070:CDS 25.0%
! ACGCTCTATTAAATTAAAGT+TGG - chr8_1:34841128-34841147 Msa1191070:CDS 25.0%
TTCTAATCTTTGCAGTTACA+AGG + chr8_1:34837823-34837842 Msa1191060:CDS 30.0%
CAATGTATTTGAAGGGAAAT+GGG + chr8_1:34837968-34837987 Msa1191060:CDS 30.0%
CAATTTGTGTAGAAAGAATC+AGG - chr8_1:34838080-34838099 None:intergenic 30.0%
CTGATTCTTTCTACACAAAT+TGG + chr8_1:34838078-34838097 Msa1191060:CDS 30.0%
ATTCTTTCTACACAAATTGG+AGG + chr8_1:34838081-34838100 Msa1191060:CDS 30.0%
! GTTAAAATCTGGAAAAGTGT+TGG - chr8_1:34838140-34838159 None:intergenic 30.0%
AACAGATCATAGACTCAAAT+TGG - chr8_1:34838359-34838378 None:intergenic 30.0%
ATTTGAGTCTATGATCTGTT+TGG + chr8_1:34838359-34838378 Msa1191060:CDS 30.0%
! GAAATTGATTCAACCATGAA+TGG - chr8_1:34838816-34838835 None:intergenic 30.0%
TGATCATGCAACAAATCATA+CGG + chr8_1:34838836-34838855 Msa1191060:CDS 30.0%
CAAATCATACGGTACATAAA+CGG + chr8_1:34838847-34838866 Msa1191060:CDS 30.0%
AGTACTTGAATGAATGTTCA+TGG + chr8_1:34839025-34839044 Msa1191060:intron 30.0%
!! TGTGCTTTTTACACAACTAT+AGG - chr8_1:34839057-34839076 None:intergenic 30.0%
! GTTGTGTAAAAAGCACAAAA+TGG + chr8_1:34839060-34839079 Msa1191060:intron 30.0%
!! AACATGTTTTGTTCCAGATA+TGG + chr8_1:34839158-34839177 Msa1191060:intron 30.0%
TTATATTCTTGGACTTCATC+TGG - chr8_1:34839188-34839207 None:intergenic 30.0%
! ATAAGTTGGCGTTAAAAACA+TGG + chr8_1:34839222-34839241 Msa1191060:CDS 30.0%
! TAAGTTGGCGTTAAAAACAT+GGG + chr8_1:34839223-34839242 Msa1191060:CDS 30.0%
TAACTTACCACAAATGTGTT+GGG - chr8_1:34839310-34839329 None:intergenic 30.0%
AAACATTCACCAAATCATGT+GGG - chr8_1:34839453-34839472 None:intergenic 30.0%
AATGAATCATACCCAATACA+AGG + chr8_1:34839771-34839790 Msa1191060:CDS 30.0%
AATATGACGAACCTTGTATT+GGG - chr8_1:34839785-34839804 None:intergenic 30.0%
AATACAAGGTTCGTCATATT+GGG + chr8_1:34839785-34839804 Msa1191060:CDS 30.0%
TAATTGGGTGATGTTCAATA+GGG - chr8_1:34839880-34839899 None:intergenic 30.0%
ATAATTGGGTGATGTTCAAT+AGG - chr8_1:34839881-34839900 None:intergenic 30.0%
! CTTTTCTGTACTCTGATAAT+TGG - chr8_1:34839896-34839915 None:intergenic 30.0%
! TGCAATCAGCAAAAGATTTT+GGG - chr8_1:34839983-34840002 None:intergenic 30.0%
! ATGCAATCAGCAAAAGATTT+TGG - chr8_1:34839984-34840003 None:intergenic 30.0%
TATACAATCCAAAAGGCAAA+AGG - chr8_1:34840200-34840219 None:intergenic 30.0%
GTTCTGTTATACAATCCAAA+AGG - chr8_1:34840207-34840226 None:intergenic 30.0%
GAGATACAAACTGTAAACAA+AGG + chr8_1:34840250-34840269 Msa1191060:three_prime_UTR 30.0%
AGTATGAACAACTAGCAATA+TGG - chr8_1:34840568-34840587 Msa1191070:CDS 30.0%
!!! CCATTACTGTCATTTTTCAT+GGG - chr8_1:34840641-34840660 Msa1191070:intron 30.0%
!!! TCCATTACTGTCATTTTTCA+TGG - chr8_1:34840642-34840661 Msa1191070:intron 30.0%
CATTGATATGAGATGGTTGA+AGG - chr8_1:34837739-34837758 None:intergenic 35.0%
TTGGGAAAATTGATTGGATC+CGG - chr8_1:34837788-34837807 None:intergenic 35.0%
AGGGTTGCAATGTATTTGAA+GGG + chr8_1:34837961-34837980 Msa1191060:CDS 35.0%
GCAATGTATTTGAAGGGAAA+TGG + chr8_1:34837967-34837986 Msa1191060:CDS 35.0%
TATTTGAAGGGAAATGGGTA+TGG + chr8_1:34837973-34837992 Msa1191060:CDS 35.0%
ATTTGAAGGGAAATGGGTAT+GGG + chr8_1:34837974-34837993 Msa1191060:CDS 35.0%
CACTTCTTCATAAAGAGGAT+AGG - chr8_1:34838009-34838028 None:intergenic 35.0%
CAACTCACTTCTTCATAAAG+AGG - chr8_1:34838014-34838033 None:intergenic 35.0%
ATCAAGGCGAAGTTAAAATC+TGG - chr8_1:34838151-34838170 None:intergenic 35.0%
! CTGAAGTCAAGAAAAGCATA+AGG - chr8_1:34838261-34838280 None:intergenic 35.0%
! CTTATGCTTTTCTTGACTTC+AGG + chr8_1:34838259-34838278 Msa1191060:intron 35.0%
AACATGTGCAACAACTTCAA+AGG - chr8_1:34838291-34838310 None:intergenic 35.0%
ATTGGAGACTCATTACAAAG+AGG + chr8_1:34838333-34838352 Msa1191060:CDS 35.0%
GTACAATCTGTAATTCCTGA+AGG + chr8_1:34838381-34838400 Msa1191060:CDS 35.0%
TCTTCATAGGTGGAATTCTT+TGG - chr8_1:34838419-34838438 None:intergenic 35.0%
!! ATGCATCGATTGAATACTAC+TGG + chr8_1:34838787-34838806 Msa1191060:CDS 35.0%
!! TGCATCGATTGAATACTACT+GGG + chr8_1:34838788-34838807 Msa1191060:CDS 35.0%
GTGAGTATATCTATAGACCT+TGG + chr8_1:34838980-34838999 Msa1191060:intron 35.0%
CGTTAAAAACATGGGCAAAT+TGG + chr8_1:34839231-34839250 Msa1191060:CDS 35.0%
! ATACATTTTGAGCAAGTGGT+TGG - chr8_1:34839271-34839290 None:intergenic 35.0%
AACTTACCACAAATGTGTTG+GGG - chr8_1:34839309-34839328 None:intergenic 35.0%
GTAACTTACCACAAATGTGT+TGG - chr8_1:34839311-34839330 None:intergenic 35.0%
GCAGAGTCACTCTTTAAATT+TGG - chr8_1:34839413-34839432 None:intergenic 35.0%
CAAACATTCACCAAATCATG+TGG - chr8_1:34839454-34839473 None:intergenic 35.0%
CAATATGACGAACCTTGTAT+TGG - chr8_1:34839786-34839805 None:intergenic 35.0%
CAATACAAGGTTCGTCATAT+TGG + chr8_1:34839784-34839803 Msa1191060:CDS 35.0%
ATACAAGGTTCGTCATATTG+GGG + chr8_1:34839786-34839805 Msa1191060:CDS 35.0%
TAGCTCTCTGTTCTTTAGTT+AGG - chr8_1:34839959-34839978 None:intergenic 35.0%
GGATTTCATTCCATGTATCT+GGG - chr8_1:34840028-34840047 None:intergenic 35.0%
AGGATTTCATTCCATGTATC+TGG - chr8_1:34840029-34840048 None:intergenic 35.0%
ACAAGCATCATTCAGATTGA+TGG + chr8_1:34840116-34840135 Msa1191060:three_prime_UTR 35.0%
!! TGATTTTAGCCTGTTCTTCA+TGG + chr8_1:34840301-34840320 Msa1191060:three_prime_UTR 35.0%
! TTTAGGTTTCCATGAAGAAC+AGG - chr8_1:34840313-34840332 None:intergenic 35.0%
CAAATGTACATGTCAAAGGT+GGG - chr8_1:34840359-34840378 None:intergenic 35.0%
GTTGCAAATGTACATGTCAA+AGG - chr8_1:34840363-34840382 None:intergenic 35.0%
GAATTAAATCGTCTGAGAGT+TGG + chr8_1:34840503-34840522 Msa1191060:three_prime_UTR 35.0%
GAACAACTAGCAATATGGTT+TGG - chr8_1:34840563-34840582 Msa1191070:CDS 35.0%
CCCATGAAAAATGACAGTAA+TGG + chr8_1:34840638-34840657 Msa1191060:intron 35.0%
CCAAAAGCTTAGATCGTATA+AGG - chr8_1:34841017-34841036 Msa1191070:CDS 35.0%
! CCTTATACGATCTAAGCTTT+TGG + chr8_1:34841014-34841033 Msa1191060:intron 35.0%
CGGTATATTTGTGAATGATC+GGG - chr8_1:34841065-34841084 Msa1191070:CDS 35.0%
GCGGTATATTTGTGAATGAT+CGG - chr8_1:34841066-34841085 Msa1191070:CDS 35.0%
!! GAGACAGCATTGATATGAGA+TGG - chr8_1:34837746-34837765 None:intergenic 40.0%
!! AGCCATGTTTTTCAGCTCTA+CGG + chr8_1:34837876-34837895 Msa1191060:CDS 40.0%
GAGGGTTGCAATGTATTTGA+AGG + chr8_1:34837960-34837979 Msa1191060:CDS 40.0%
AGACCACTTGCATGAAGAAT+GGG + chr8_1:34838051-34838070 Msa1191060:CDS 40.0%
CTTTCTACACAAATTGGAGG+TGG + chr8_1:34838084-34838103 Msa1191060:CDS 40.0%
ACTTCGCCTTGATTACTCTT+AGG + chr8_1:34838158-34838177 Msa1191060:intron 40.0%
CGGAAACCTAAGAGTAATCA+AGG - chr8_1:34838167-34838186 None:intergenic 40.0%
TGAAGTTGTTGCACATGTTG+AGG + chr8_1:34838292-34838311 Msa1191060:CDS 40.0%
CATAGGTGGAATTCTTTGGA+GGG - chr8_1:34838415-34838434 None:intergenic 40.0%
TCATAGGTGGAATTCTTTGG+AGG - chr8_1:34838416-34838435 None:intergenic 40.0%
!!! TCCTATAGCTTTGTTTTGGC+AGG + chr8_1:34838758-34838777 Msa1191060:intron 40.0%
TCCTGCCAAAACAAAGCTAT+AGG - chr8_1:34838762-34838781 None:intergenic 40.0%
TCATACGGTACATAAACGGA+TGG + chr8_1:34838851-34838870 Msa1191060:CDS 40.0%
CTTGACTCAATAGCTAAGCA+TGG + chr8_1:34838879-34838898 Msa1191060:CDS 40.0%
TAGCTAAGCATGGCAAACAT+TGG + chr8_1:34838889-34838908 Msa1191060:CDS 40.0%
!! CTCACGTAGCATTGATGAAA+GGG - chr8_1:34838965-34838984 None:intergenic 40.0%
!! ACTCACGTAGCATTGATGAA+AGG - chr8_1:34838966-34838985 None:intergenic 40.0%
GTATATCTATAGACCTTGGC+TGG + chr8_1:34838984-34839003 Msa1191060:intron 40.0%
!! CAAGTACTGAACTATGCTCA+CGG - chr8_1:34839013-34839032 None:intergenic 40.0%
TTCATCTGGTGATCCATATC+TGG - chr8_1:34839174-34839193 None:intergenic 40.0%
CTGTCGTGACGTTATATTCT+TGG - chr8_1:34839199-34839218 None:intergenic 40.0%
AAAGTGAAGCCCACATGATT+TGG + chr8_1:34839441-34839460 Msa1191060:intron 40.0%
! TTATTTTCTTCTCCAGGAGC+TGG + chr8_1:34839715-34839734 Msa1191060:intron 40.0%
! TATTTTCTTCTCCAGGAGCT+GGG + chr8_1:34839716-34839735 Msa1191060:intron 40.0%
!! CTTTTGCTGATTGCATTCAC+TGG + chr8_1:34839988-34840007 Msa1191060:CDS 40.0%
AGCATCATTCAGATTGATGG+TGG + chr8_1:34840119-34840138 Msa1191060:three_prime_UTR 40.0%
! TTCCAACACCTTTTGCCTTT+TGG + chr8_1:34840189-34840208 Msa1191060:three_prime_UTR 40.0%
! ATCCAAAAGGCAAAAGGTGT+TGG - chr8_1:34840194-34840213 None:intergenic 40.0%
GCAAATGTACATGTCAAAGG+TGG - chr8_1:34840360-34840379 None:intergenic 40.0%
TTAAATCGTCTGAGAGTTGG+TGG + chr8_1:34840506-34840525 Msa1191060:three_prime_UTR 40.0%
TTCGAAGAAGAGGTTAGCAA+AGG - chr8_1:34840591-34840610 Msa1191070:CDS 40.0%
ATGCATTCTCTTCGAAGAAG+AGG - chr8_1:34840601-34840620 Msa1191070:CDS 40.0%
TCAAGGAAACGATGAAGATG+TGG + chr8_1:34840745-34840764 Msa1191060:intron 40.0%
GATACAAAGCGTGAAGATAG+CGG - chr8_1:34841085-34841104 Msa1191070:CDS 40.0%
TCAAGTCTTCGATTGATCGC+CGG + chr8_1:34837766-34837785 Msa1191060:CDS 45.0%
GCTTGCTCTTCAAGCTATCT+AGG - chr8_1:34837854-34837873 None:intergenic 45.0%
TGCCGTAGAGCTGAAAAACA+TGG - chr8_1:34837881-34837900 None:intergenic 45.0%
TGGTGGAAGGAATCGATTAC+CGG + chr8_1:34837908-34837927 Msa1191060:CDS 45.0%
! ATTACCGGTTGTTGTGTTGC+CGG + chr8_1:34837923-34837942 Msa1191060:CDS 45.0%
AGAAGTGAGTTGCCCTTACT+TGG + chr8_1:34838022-34838041 Msa1191060:CDS 45.0%
TGGTCTGCTTGACCAAGTAA+GGG - chr8_1:34838037-34838056 None:intergenic 45.0%
CAGACCACTTGCATGAAGAA+TGG + chr8_1:34838050-34838069 Msa1191060:CDS 45.0%
TCTCCCATTCTTCATGCAAG+TGG - chr8_1:34838057-34838076 None:intergenic 45.0%
!! GGAAAAGTGTTGGCTACCTT+GGG - chr8_1:34838130-34838149 None:intergenic 45.0%
!! TGGAAAAGTGTTGGCTACCT+TGG - chr8_1:34838131-34838150 None:intergenic 45.0%
TGGAGGGATTTCTTTCCTTC+AGG - chr8_1:34838399-34838418 None:intergenic 45.0%
ATACTACTGGGCTCCATTCA+TGG + chr8_1:34838800-34838819 Msa1191060:CDS 45.0%
AAGCATGGCAAACATTGGCA+AGG + chr8_1:34838894-34838913 Msa1191060:CDS 45.0%
! TTGGCAAGGAGTGGACATTT+TGG + chr8_1:34838908-34838927 Msa1191060:CDS 45.0%
TGGTGTTCGAGAGCTATGTT+TGG + chr8_1:34838928-34838947 Msa1191060:CDS 45.0%
TGTTCGAGAGCTATGTTTGG+TGG + chr8_1:34838931-34838950 Msa1191060:CDS 45.0%
CGTCACGACAGCATATAAGT+TGG + chr8_1:34839208-34839227 Msa1191060:CDS 45.0%
GTATGTCCCCAACACATTTG+TGG + chr8_1:34839300-34839319 Msa1191060:CDS 45.0%
! AAGCAGTTTTCGTCACTTCC+TGG - chr8_1:34839750-34839769 None:intergenic 45.0%
GATGCTCACACCTCAGTTTA+TGG + chr8_1:34839915-34839934 Msa1191060:CDS 45.0%
TCAGTTTATGGCGAGCGAAA+GGG + chr8_1:34839927-34839946 Msa1191060:CDS 45.0%
TGCATTCACTGGTGTTTACC+TGG + chr8_1:34839999-34840018 Msa1191060:CDS 45.0%
GCATTCACTGGTGTTTACCT+GGG + chr8_1:34840000-34840019 Msa1191060:CDS 45.0%
CATTCACTGGTGTTTACCTG+GGG + chr8_1:34840001-34840020 Msa1191060:CDS 45.0%
!! GCAAGCTTCTGAAACTGAGT+GGG - chr8_1:34840447-34840466 Msa1191070:CDS 45.0%
!! AGCAAGCTTCTGAAACTGAG+TGG - chr8_1:34840448-34840467 Msa1191070:CDS 45.0%
CGTTGAGTTCACGTATGTTC+TGG + chr8_1:34840481-34840500 Msa1191060:three_prime_UTR 45.0%
!! GTTGGTGGTAAATCTTGACC+TGG + chr8_1:34840521-34840540 Msa1191060:three_prime_UTR 45.0%
TCTTCGAAGAGAATGCATCC+TGG + chr8_1:34840603-34840622 Msa1191060:three_prime_UTR 45.0%
GTGGTCTGCTTGACCAAGTA+AGG - chr8_1:34838038-34838057 None:intergenic 50.0%
!! AAAGTGTTGGCTACCTTGGG+AGG - chr8_1:34838127-34838146 None:intergenic 50.0%
TGGCAAACATTGGCAAGGAG+TGG + chr8_1:34838899-34838918 Msa1191060:CDS 50.0%
CTTTCGCTCGCCATAAACTG+AGG - chr8_1:34839928-34839947 None:intergenic 50.0%
CTCAGTTTATGGCGAGCGAA+AGG + chr8_1:34839926-34839945 Msa1191060:CDS 50.0%
CATGGGACAGAAAAGACTCC+AGG - chr8_1:34840624-34840643 Msa1191070:intron 50.0%
CAGCTCTACGGCATGTCATC+TGG + chr8_1:34837888-34837907 Msa1191060:CDS 55.0%
CTCTACGGCATGTCATCTGG+TGG + chr8_1:34837891-34837910 Msa1191060:CDS 55.0%
ACGGCATGTCATCTGGTGGA+AGG + chr8_1:34837895-34837914 Msa1191060:CDS 55.0%
TCCTCCGGCAACACAACAAC+CGG - chr8_1:34837930-34837949 None:intergenic 55.0%
AATTGGAGGTGGCAGCCTCA+TGG + chr8_1:34838095-34838114 Msa1191060:CDS 55.0%
CTTGGGAGGTTGCATCCATG+AGG - chr8_1:34838113-34838132 None:intergenic 55.0%
CTCATGGATGCAACCTCCCA+AGG + chr8_1:34838111-34838130 Msa1191060:CDS 55.0%
TCTTCTCCAGGAGCTGGGAA+TGG + chr8_1:34839721-34839740 Msa1191060:intron 55.0%
GGTTCGTCATATTGGGGCAC+AGG + chr8_1:34839792-34839811 Msa1191060:CDS 55.0%
TACCTGGGGTCCCAGATACA+TGG + chr8_1:34840015-34840034 Msa1191060:CDS 55.0%
! TTCCATGTATCTGGGACCCC+AGG - chr8_1:34840020-34840039 None:intergenic 55.0%
GGAGATGCTGATATCGAGCC+AGG - chr8_1:34840542-34840561 Msa1191070:CDS 55.0%
ACCGGTTGTTGTGTTGCCGG+AGG + chr8_1:34837926-34837945 Msa1191060:CDS 60.0%
GTTGCCGGAGGATCGCATTG+AGG + chr8_1:34837938-34837957 Msa1191060:CDS 60.0%
CCCTCCTCAATGCGATCCTC+CGG - chr8_1:34837945-34837964 None:intergenic 60.0%
CCGGAGGATCGCATTGAGGA+GGG + chr8_1:34837942-34837961 Msa1191060:CDS 60.0%
ATGCTCACGGAGACCAGCCA+AGG - chr8_1:34839000-34839019 None:intergenic 60.0%
TGGCTTCCATTCCCAGCTCC+TGG - chr8_1:34839730-34839749 None:intergenic 60.0%
AGGAGCTGGGAATGGAAGCC+AGG + chr8_1:34839729-34839748 Msa1191060:intron 60.0%
GCCGGAGGATCGCATTGAGG+AGG + chr8_1:34837941-34837960 Msa1191060:CDS 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 34837706 34841152 34837706 ID=Msa1191060;Name=Msa1191060
chr8_1 mRNA 34837706 34841152 34837706 ID=Msa1191060-mRNA-1;Parent=Msa1191060;Name=Msa1191060-mRNA-1;_AED=0.06;_eAED=0.06;_QI=50|1|1|1|0.8|0.66|6|682|417
chr8_1 exon 34837706 34838132 34837706 ID=Msa1191060-mRNA-1:exon:11577;Parent=Msa1191060-mRNA-1
chr8_1 exon 34838281 34838452 34838281 ID=Msa1191060-mRNA-1:exon:11578;Parent=Msa1191060-mRNA-1
chr8_1 exon 34838780 34838979 34838780 ID=Msa1191060-mRNA-1:exon:11579;Parent=Msa1191060-mRNA-1
chr8_1 exon 34839175 34839321 34839175 ID=Msa1191060-mRNA-1:exon:11580;Parent=Msa1191060-mRNA-1
chr8_1 exon 34839731 34840642 34839731 ID=Msa1191060-mRNA-1:exon:11581;Parent=Msa1191060-mRNA-1
chr8_1 exon 34841025 34841152 34841025 ID=Msa1191060-mRNA-1:exon:11582;Parent=Msa1191060-mRNA-1
chr8_1 five_prime_UTR 34837706 34837755 34837706 ID=Msa1191060-mRNA-1:five_prime_utr;Parent=Msa1191060-mRNA-1
chr8_1 CDS 34837756 34838132 34837756 ID=Msa1191060-mRNA-1:cds;Parent=Msa1191060-mRNA-1
chr8_1 CDS 34838281 34838452 34838281 ID=Msa1191060-mRNA-1:cds;Parent=Msa1191060-mRNA-1
chr8_1 CDS 34838780 34838979 34838780 ID=Msa1191060-mRNA-1:cds;Parent=Msa1191060-mRNA-1
chr8_1 CDS 34839175 34839321 34839175 ID=Msa1191060-mRNA-1:cds;Parent=Msa1191060-mRNA-1
chr8_1 CDS 34839731 34840088 34839731 ID=Msa1191060-mRNA-1:cds;Parent=Msa1191060-mRNA-1
chr8_1 three_prime_UTR 34840089 34840642 34840089 ID=Msa1191060-mRNA-1:three_prime_utr;Parent=Msa1191060-mRNA-1
chr8_1 three_prime_UTR 34841025 34841152 34841025 ID=Msa1191060-mRNA-1:three_prime_utr;Parent=Msa1191060-mRNA-1
Gene Sequence

>Msa1191060

ATGCTGTCTCTCAAGTCTTCGATTGATCGCCGGATCCAATCAATTTTCCCAATTATATTGTATTCACTTCTAATCTTTGCAGTTACAAGGTTAGTCCTAGATAGCTTGAAGAGCAAGCAAAGCCATGTTTTTCAGCTCTACGGCATGTCATCTGGTGGAAGGAATCGATTACCGGTTGTTGTGTTGCCGGAGGATCGCATTGAGGAGGGTTGCAATGTATTTGAAGGGAAATGGGTATGGGATAATGTGTCCTATCCTCTTTATGAAGAAGTGAGTTGCCCTTACTTGGTCAAGCAGACCACTTGCATGAAGAATGGGAGACCTGATTCTTTCTACACAAATTGGAGGTGGCAGCCTCATGGATGCAACCTCCCAAGGTTTGATCCTTTGAAGTTGTTGCACATGTTGAGGAACAAAAGAATGATGTTTATTGGAGACTCATTACAAAGAGGCCAATTTGAGTCTATGATCTGTTTGGTACAATCTGTAATTCCTGAAGGAAAGAAATCCCTCCAAAGAATTCCACCTATGAAGATATTTAAAGTTGAGGAGTTTAATGCATCGATTGAATACTACTGGGCTCCATTCATGGTTGAATCAATTTCTGATCATGCAACAAATCATACGGTACATAAACGGATGGTGATGCTTGACTCAATAGCTAAGCATGGCAAACATTGGCAAGGAGTGGACATTTTGGTGTTCGAGAGCTATGTTTGGTGGATGCACAGCCCTTTCATCAATGCTACATATGGATCACCAGATGAAGTCCAAGAATATAACGTCACGACAGCATATAAGTTGGCGTTAAAAACATGGGCAAATTGGTTAGAATCAAACATCCAACCACTTGCTCAAAATGTATTTTTCATGAGTATGTCCCCAACACATTTGTGGAGCTGGGAATGGAAGCCAGGAAGTGACGAAAACTGCTTCAATGAATCATACCCAATACAAGGTTCGTCATATTGGGGCACAGGCTCGAATCTTGAGATTATGAAGATATTACATGATTCACTACAAGAACTGAAAATAGATGTCACCCTATTGAACATCACCCAATTATCAGAGTACAGAAAAGATGCTCACACCTCAGTTTATGGCGAGCGAAAGGGCAAGCTCCTAACTAAAGAACAGAGAGCTAACCCAAAATCTTTTGCTGATTGCATTCACTGGTGTTTACCTGGGGTCCCAGATACATGGAATGAAATCCTATATGCATATCTGTTTAAGAACTATCAAAACTTTTCTTAA
Protein sequence

>Msa1191060

MLSLKSSIDRRIQSIFPIILYSLLIFAVTRLVLDSLKSKQSHVFQLYGMSSGGRNRLPVVVLPEDRIEEGCNVFEGKWVWDNVSYPLYEEVSCPYLVKQTTCMKNGRPDSFYTNWRWQPHGCNLPRFDPLKLLHMLRNKRMMFIGDSLQRGQFESMICLVQSVIPEGKKSLQRIPPMKIFKVEEFNASIEYYWAPFMVESISDHATNHTVHKRMVMLDSIAKHGKHWQGVDILVFESYVWWMHSPFINATYGSPDEVQEYNVTTAYKLALKTWANWLESNIQPLAQNVFFMSMSPTHLWSWEWKPGSDENCFNESYPIQGSSYWGTGSNLEIMKILHDSLQELKIDVTLLNITQLSEYRKDAHTSVYGERKGKLLTKEQRANPKSFADCIHWCLPGVPDTWNEILYAYLFKNYQNFS*