AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1191110

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1191110 MtrunA17_Chr8g0360521 97.362 417 11 0 1 417 1 417 0.0 852
Msa1191110 MtrunA17_Chr3g0113671 50.704 355 166 4 60 409 99 449 4.52e-130 382
Msa1191110 MtrunA17_Chr5g0437601 49.857 349 170 3 66 410 78 425 1.45e-129 380
Msa1191110 MtrunA17_Chr4g0005491 46.883 401 192 7 18 410 21 408 4.40e-127 373
Msa1191110 MtrunA17_Chr4g0006991 48.725 353 173 3 64 409 76 427 1.06e-126 372
Msa1191110 MtrunA17_Chr7g0242701 49.008 353 172 3 64 409 76 427 2.75e-124 366
Msa1191110 MtrunA17_Chr3g0114101 49.709 344 168 3 71 410 89 431 5.81e-124 366
Msa1191110 MtrunA17_Chr4g0005481 49.123 342 172 2 69 409 106 446 7.49e-123 363
Msa1191110 MtrunA17_Chr7g0243301 43.902 410 208 8 12 410 12 410 9.64e-120 354
Msa1191110 MtrunA17_Chr5g0437291 46.000 350 181 4 69 410 163 512 1.69e-115 347
Msa1191110 MtrunA17_Chr1g0171171 42.566 343 173 9 71 409 53 375 4.47e-85 264
Msa1191110 MtrunA17_Chr1g0210771 39.766 342 185 9 71 409 59 382 1.59e-82 258
Msa1191110 MtrunA17_Chr3g0105301 38.329 347 195 6 71 410 43 377 8.26e-82 256
Msa1191110 MtrunA17_Chr3g0097891 37.249 349 186 7 68 409 28 350 1.67e-78 246
Msa1191110 MtrunA17_Chr5g0430371 35.165 364 209 8 62 410 49 400 1.91e-77 245
Msa1191110 MtrunA17_Chr7g0258851 35.876 354 200 8 71 410 248 588 5.27e-75 244
Msa1191110 MtrunA17_Chr4g0068111 34.699 366 200 8 71 416 114 460 1.14e-74 240
Msa1191110 MtrunA17_Chr1g0175671 35.593 354 201 8 71 410 170 510 1.49e-74 241
Msa1191110 MtrunA17_Chr2g0314801 37.830 341 184 8 71 406 33 350 4.58e-74 235
Msa1191110 MtrunA17_Chr7g0259711 36.639 363 193 12 69 411 89 434 1.55e-73 237
Msa1191110 MtrunA17_Chr4g0041011 35.714 350 189 10 67 409 43 363 3.17e-73 233
Msa1191110 MtrunA17_Chr5g0413271 35.457 361 204 8 62 411 136 478 3.56e-73 237
Msa1191110 MtrunA17_Chr2g0287901 39.726 365 186 14 65 411 91 439 3.75e-73 236
Msa1191110 MtrunA17_Chr3g0085081 37.464 347 184 8 69 409 29 348 6.01e-73 232
Msa1191110 MtrunA17_Chr4g0071391 35.613 351 201 11 71 409 109 446 1.04e-72 235
Msa1191110 MtrunA17_Chr3g0091031 37.143 350 187 8 64 407 24 346 7.24e-72 229
Msa1191110 MtrunA17_Chr2g0283581 36.176 387 210 10 27 409 5 358 5.20e-71 228
Msa1191110 MtrunA17_Chr7g0269991 34.734 357 189 10 71 409 137 467 2.86e-70 229
Msa1191110 MtrunA17_Chr2g0325481 35.897 351 195 10 64 410 43 367 3.36e-70 226
Msa1191110 MtrunA17_Chr4g0045941 35.072 345 197 8 68 409 30 350 1.01e-68 221
Msa1191110 MtrunA17_Chr5g0413851 34.483 406 213 10 14 412 3 362 1.41e-68 221
Msa1191110 MtrunA17_Chr1g0213281 32.044 362 226 9 60 410 164 516 1.08e-67 224
Msa1191110 MtrunA17_Chr3g0085071 35.244 349 195 8 64 407 39 361 5.33e-67 217
Msa1191110 MtrunA17_Chr4g0045951 35.028 354 201 9 61 409 33 362 3.05e-66 215
Msa1191110 MtrunA17_Chr2g0314791 32.773 357 196 10 67 412 25 348 1.85e-64 210
Msa1191110 MtrunA17_Chr8g0368461 32.973 370 206 10 69 411 176 530 1.14e-62 211
Msa1191110 MtrunA17_Chr3g0126021 32.249 369 210 9 59 411 117 461 4.85e-61 204
Msa1191110 MtrunA17_Chr8g0384151 32.231 363 208 10 65 414 84 421 8.52e-59 198
Msa1191110 MtrunA17_Chr1g0209921 34.783 230 140 6 71 297 44 266 6.83e-49 167
Msa1191110 MtrunA17_Chr1g0178081 30.000 360 178 9 69 417 53 349 6.20e-46 162
Msa1191110 MtrunA17_Chr6g0476041 28.421 380 219 12 67 415 163 520 6.05e-45 163
Msa1191110 MtrunA17_Chr1g0188191 28.496 379 224 15 67 417 230 589 8.24e-44 161
Msa1191110 MtrunA17_Chr6g0456691 28.404 426 243 15 14 409 26 419 4.59e-41 150
Msa1191110 MtrunA17_Chr8g0391481 28.723 376 222 11 68 417 24 379 5.50e-41 149
Msa1191110 MtrunA17_Chr8g0347321 29.444 360 218 13 71 409 95 439 6.23e-41 150
Msa1191110 MtrunA17_Chr7g0226991 28.689 366 232 13 64 411 50 404 6.77e-41 149
Msa1191110 MtrunA17_Chr6g0456681 27.528 356 226 11 69 405 62 404 1.69e-38 143
Msa1191110 MtrunA17_Chr2g0283851 29.917 361 206 16 72 405 56 396 4.13e-38 142
Msa1191110 MtrunA17_Chr5g0414051 28.267 375 214 14 68 411 72 422 6.33e-38 142
Msa1191110 MtrunA17_Chr5g0414091 27.123 424 241 17 18 405 36 427 7.46e-38 142
Msa1191110 MtrunA17_Chr8g0384421 28.926 363 215 12 69 409 131 472 7.46e-38 142
Msa1191110 MtrunA17_Chr3g0140371 27.520 367 224 11 68 411 15 362 7.47e-38 140
Msa1191110 MtrunA17_Chr4g0049421 28.226 372 223 16 71 417 48 400 7.15e-36 136
Msa1191110 MtrunA17_Chr5g0414061 28.686 373 208 12 71 411 94 440 2.79e-35 135
Msa1191110 MtrunA17_Chr8g0387921 29.121 364 207 16 71 405 74 415 4.40e-35 134
Msa1191110 MtrunA17_Chr5g0414041 27.273 363 228 10 71 411 87 435 9.36e-34 131
Msa1191110 MtrunA17_Chr4g0070341 27.749 382 195 16 69 409 130 471 5.47e-33 129
Msa1191110 MtrunA17_Chr6g0455901 26.005 373 219 15 69 409 69 416 3.03e-29 118
Msa1191110 MtrunA17_Chr6g0451321 23.978 367 238 13 65 409 110 457 1.39e-27 114
Msa1191110 MtrunA17_Chr7g0221271 33.939 165 105 3 1 163 8 170 2.10e-26 105
Msa1191110 MtrunA17_Chr7g0221291 33.333 165 106 3 1 163 8 170 3.82e-25 100
Msa1191110 MtrunA17_Chr2g0287911 56.140 57 17 2 71 127 61 109 1.03e-16 75.5
Msa1191110 MtrunA17_Chr2g0287931 32.540 126 76 3 132 249 2 126 2.40e-15 72.4
Msa1191110 MtrunA17_Chr3g0085101 37.736 106 58 2 265 367 6 106 4.20e-15 71.2
Msa1191110 MtrunA17_Chr5g0429191 61.224 49 13 2 355 402 2 45 2.69e-12 61.2
Msa1191110 MtrunA17_Chr1g0209931 34.286 105 52 2 308 412 8 95 3.80e-12 62.4
Msa1191110 MtrunA17_Chr7g0221281 22.222 243 149 7 185 405 8 232 3.65e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1191110 AT1G73140.1 69.471 416 122 2 2 416 1 412 0.0 616
Msa1191110 AT5G01360.2 49.587 363 176 2 54 409 16 378 8.11e-134 389
Msa1191110 AT5G01360.1 49.587 363 176 2 54 409 72 434 2.65e-133 390
Msa1191110 AT2G40150.1 49.861 361 166 3 60 409 64 420 3.27e-131 384
Msa1191110 AT3G55990.1 50.432 347 167 2 69 410 138 484 1.48e-130 385
Msa1191110 AT2G40320.1 48.711 349 174 2 66 410 76 423 9.05e-124 365
Msa1191110 AT3G11030.1 48.571 350 174 4 66 410 101 449 2.37e-120 357
Msa1191110 AT5G01620.2 46.398 347 177 4 68 409 107 449 1.91e-119 355
Msa1191110 AT5G01620.1 46.398 347 177 4 68 409 107 449 1.91e-119 355
Msa1191110 AT5G01620.3 46.398 347 177 4 68 409 115 457 2.83e-119 355
Msa1191110 AT2G40160.1 41.608 423 230 5 4 409 1 423 3.29e-117 348
Msa1191110 AT2G40160.2 41.509 424 231 5 4 410 1 424 5.24e-117 348
Msa1191110 AT2G38320.1 43.868 424 204 8 1 413 8 408 1.08e-116 347
Msa1191110 AT2G38320.2 46.483 327 164 5 96 413 1 325 1.18e-99 300
Msa1191110 AT3G54260.1 39.710 345 187 7 71 412 51 377 1.27e-82 258
Msa1191110 AT2G30900.1 38.040 347 185 10 71 410 43 366 1.96e-80 252
Msa1191110 AT3G62390.1 37.500 360 193 11 64 410 132 472 3.24e-79 253
Msa1191110 AT2G40160.3 40.514 311 169 4 4 298 1 311 4.62e-79 247
Msa1191110 AT5G20590.1 36.441 354 199 9 70 410 140 480 9.58e-79 251
Msa1191110 AT5G58600.1 36.599 347 202 6 71 410 66 401 3.43e-77 245
Msa1191110 AT3G12060.1 37.079 356 197 8 69 410 194 536 5.28e-77 249
Msa1191110 AT1G78710.1 35.465 344 194 9 71 410 38 357 4.94e-76 241
Msa1191110 AT1G29050.1 35.262 363 205 8 50 409 43 378 6.91e-75 238
Msa1191110 AT2G31110.2 38.304 342 184 8 71 409 45 362 2.62e-74 236
Msa1191110 AT5G06700.1 37.110 353 199 10 69 409 253 594 9.15e-74 242
Msa1191110 AT2G34070.1 34.278 353 204 7 61 409 55 383 1.32e-73 235
Msa1191110 AT5G49340.1 36.915 363 186 10 71 410 100 442 2.75e-73 237
Msa1191110 AT3G06080.2 36.975 357 199 8 70 411 102 447 1.68e-72 235
Msa1191110 AT1G60790.1 33.938 386 216 12 52 411 162 534 6.59e-69 228
Msa1191110 AT2G30010.1 33.867 375 208 10 56 410 43 397 7.93e-69 223
Msa1191110 AT2G42570.1 36.919 344 188 8 71 410 47 365 1.08e-68 222
Msa1191110 AT2G30010.2 33.867 375 208 10 56 410 86 440 1.40e-68 224
Msa1191110 AT3G14850.2 34.582 347 201 8 69 411 32 356 3.15e-68 220
Msa1191110 AT5G19160.1 34.239 368 208 10 70 417 98 451 3.78e-68 223
Msa1191110 AT5G06230.2 35.150 367 206 9 67 414 17 370 9.53e-58 194
Msa1191110 AT1G48880.1 32.113 355 199 13 71 411 115 441 1.30e-57 195
Msa1191110 AT5G06230.1 35.150 367 206 9 67 414 58 411 2.36e-57 194
Msa1191110 AT1G78710.2 30.294 340 164 8 71 410 31 297 3.94e-56 187
Msa1191110 AT3G11570.1 33.913 345 183 12 93 414 103 425 2.76e-52 181
Msa1191110 AT3G62390.2 36.842 247 142 7 64 300 132 374 1.68e-51 178
Msa1191110 AT2G30900.2 38.496 226 124 7 71 290 43 259 4.07e-51 173
Msa1191110 AT5G20590.2 35.833 240 141 5 70 298 140 377 6.93e-51 176
Msa1191110 AT2G31110.3 38.222 225 128 4 71 292 45 261 1.45e-50 172
Msa1191110 AT3G06080.1 36.402 239 141 4 70 298 102 339 2.59e-48 168
Msa1191110 AT5G19160.2 34.728 239 145 4 70 298 98 335 3.60e-48 168
Msa1191110 AT5G58600.2 35.931 231 137 4 71 297 66 289 7.35e-48 165
Msa1191110 AT2G34070.2 32.353 272 157 6 142 409 1 249 4.47e-46 159
Msa1191110 AT5G64020.1 30.518 367 212 13 71 409 57 408 6.27e-43 155
Msa1191110 AT5G51640.1 27.907 387 221 13 64 415 131 494 8.22e-43 157
Msa1191110 AT4G25360.1 27.569 399 228 14 58 417 156 532 1.65e-42 157
Msa1191110 AT4G25360.2 27.569 399 228 14 58 417 156 532 1.65e-42 157
Msa1191110 AT5G64470.3 29.201 363 220 15 71 414 55 399 3.15e-42 153
Msa1191110 AT1G70230.1 26.912 353 228 11 71 411 79 413 3.11e-41 151
Msa1191110 AT3G14850.1 31.752 274 162 7 142 411 1 253 1.47e-40 145
Msa1191110 AT3G02440.1 28.531 354 218 11 71 405 127 464 2.06e-40 150
Msa1191110 AT3G02440.2 28.531 354 218 11 71 405 135 472 2.14e-40 150
Msa1191110 AT5G15890.1 28.307 378 228 10 50 405 162 518 1.34e-39 149
Msa1191110 AT5G20680.6 28.534 382 192 14 69 409 116 457 2.02e-38 144
Msa1191110 AT2G37720.1 29.787 376 191 16 71 409 143 482 2.13e-38 145
Msa1191110 AT5G64470.2 28.726 369 220 17 71 414 55 405 2.46e-38 143
Msa1191110 AT2G14530.1 27.989 368 213 12 71 409 62 406 3.96e-38 142
Msa1191110 AT5G20680.2 28.534 382 192 14 69 409 192 533 4.70e-38 144
Msa1191110 AT5G20680.4 28.534 382 192 14 69 409 210 551 5.22e-38 144
Msa1191110 AT5G20680.1 28.534 382 192 14 69 409 210 551 5.22e-38 144
Msa1191110 AT5G20680.3 28.534 382 192 14 69 409 210 551 5.22e-38 144
Msa1191110 AT5G20680.5 28.534 382 192 14 69 409 210 551 5.22e-38 144
Msa1191110 AT4G23790.1 26.711 453 244 21 6 405 6 423 1.81e-37 141
Msa1191110 AT1G01430.1 26.250 400 259 12 34 410 62 448 5.51e-37 140
Msa1191110 AT5G06230.3 34.538 249 142 6 67 297 58 303 1.54e-36 136
Msa1191110 AT5G15900.1 28.255 361 223 11 69 409 65 409 1.12e-35 136
Msa1191110 AT5G15900.2 28.255 361 223 11 69 409 84 428 1.12e-35 136
Msa1191110 AT4G11090.1 26.075 372 227 13 62 405 70 421 3.73e-35 135
Msa1191110 AT4G01080.1 26.503 366 224 13 63 405 83 426 8.09e-35 134
Msa1191110 AT3G28150.1 29.223 373 208 16 66 409 65 410 2.00e-34 132
Msa1191110 AT2G31110.1 35.345 232 124 7 181 409 6 214 1.15e-33 125
Msa1191110 AT5G64470.4 26.506 249 162 10 71 303 55 298 1.73e-21 94.7
Msa1191110 AT5G64470.1 26.908 249 161 10 71 303 55 298 1.77e-21 95.1

Find 138 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGCAATCAGCAAAAGATTT+TGG 0.125911 8_1:-34873280 None:intergenic
AGAAGTGAATACAATATAAT+TGG 0.171993 8_1:-34871103 None:intergenic
AGGATTTCATTCCATGTATC+TGG 0.201338 8_1:-34873325 None:intergenic
GATGCTCACACCTCAGTTTA+TGG 0.206651 8_1:+34873214 Msa1191110:CDS
AACAAAAGAATGATGTTTAT+TGG 0.212670 8_1:+34871614 Msa1191110:CDS
CTGATTCTTTCTACACAAAT+TGG 0.216029 8_1:+34871377 Msa1191110:CDS
CAATACAAGGTTCGTCATAT+TGG 0.230048 8_1:+34873083 Msa1191110:CDS
TAGCTCTCTGTTCTTTAGTT+AGG 0.246525 8_1:-34873255 None:intergenic
TGGAGGGATTTCTTTCCTTC+AGG 0.275411 8_1:-34871695 None:intergenic
TCTTCATAGGTGGAATTCTT+TGG 0.275642 8_1:-34871715 None:intergenic
CTGTCGTGACGTTATATTCT+TGG 0.282711 8_1:-34872495 None:intergenic
AATACAAGGTTCGTCATATT+GGG 0.282741 8_1:+34873084 Msa1191110:CDS
CCTTATACGATCTAAGCTTT+TGG 0.289384 8_1:+34874314 Msa1191110:intron
TTGGCAAGGAGTGGACATTT+TGG 0.310618 8_1:+34872207 Msa1191110:CDS
GCAATGTATTTGAAGGGAAA+TGG 0.312090 8_1:+34871266 Msa1191110:CDS
TGCATTCACTGGTGTTTACC+TGG 0.316704 8_1:+34873298 Msa1191110:CDS
AACAGATCATAGACTCAAAT+TGG 0.319491 8_1:-34871655 None:intergenic
GCTTGCTCTTCAAGCTATCT+AGG 0.322912 8_1:-34871150 None:intergenic
ATACTACTGGGCTCCATTCA+TGG 0.353905 8_1:+34872099 Msa1191110:CDS
CGTTGAGTTCACGTATGTTC+TGG 0.354464 8_1:+34873780 Msa1191110:three_prime_UTR
TCAACTTTAAATATCTTCAT+AGG 0.360087 8_1:-34871728 None:intergenic
ATATAATTGGGAAAATTGAT+TGG 0.370417 8_1:-34871090 None:intergenic
CAATGTATTTGAAGGGAAAT+GGG 0.374415 8_1:+34871267 Msa1191110:CDS
TGCCGAAAATTATATTGTTT+AGG 0.375449 8_1:-34873626 None:intergenic
CAGCTCTACGGCATGTCATC+TGG 0.379386 8_1:+34871187 Msa1191110:CDS
TTATATTCTTGGACTTCATC+TGG 0.380050 8_1:-34872484 None:intergenic
TAACTTACCACAAATGTGTT+GGG 0.386349 8_1:-34872606 None:intergenic
ATGCATCGATTGAATACTAC+TGG 0.392477 8_1:+34872086 Msa1191110:CDS
ATTTGAGTCTATGATCTGTT+TGG 0.397442 8_1:+34871658 Msa1191110:CDS
ATAATTGGGTGATGTTCAAT+AGG 0.397627 8_1:-34873177 None:intergenic
CAATATGACGAACCTTGTAT+TGG 0.400765 8_1:-34873082 None:intergenic
AGTATGAACAACTAGCAATA+TGG 0.407962 8_1:-34873864 Msa1191120:CDS
GTGGTCTGCTTGACCAAGTA+AGG 0.408960 8_1:-34871334 None:intergenic
TTTAGGTTTCCATGAAGAAC+AGG 0.415460 8_1:-34873609 None:intergenic
AGAAGTGAGTTGCCCTTACT+TGG 0.416247 8_1:+34871321 Msa1191110:CDS
ACGCTCTATTAAATTAAAGT+TGG 0.428012 8_1:-34874425 Msa1191120:CDS
TGGTGGAAGGAATCGATTAC+CGG 0.428048 8_1:+34871207 Msa1191110:CDS
AGGCTAAAATCATAAACTAT+AGG 0.429225 8_1:-34873589 None:intergenic
CAAATCATACGGTACATAAA+CGG 0.437106 8_1:+34872146 Msa1191110:CDS
CAATTTGTGTAGAAAGAATC+AGG 0.437639 8_1:-34871376 None:intergenic
ATTACCGGTTGTTGTGTTGC+CGG 0.437991 8_1:+34871222 Msa1191110:CDS
TCTTAAACAGATATGCATAT+AGG 0.438576 8_1:-34873345 None:intergenic
GAAGTGAATACAATATAATT+GGG 0.442470 8_1:-34871102 None:intergenic
GAACAACTAGCAATATGGTT+TGG 0.449984 8_1:-34873859 Msa1191120:CDS
GAAATTGATTCAACCATGAA+TGG 0.451055 8_1:-34872112 None:intergenic
TTGGGAAAATTGATTGGATC+CGG 0.452959 8_1:-34871084 None:intergenic
AATATGACGAACCTTGTATT+GGG 0.455104 8_1:-34873081 None:intergenic
ACAAGCATCATTCAGATTGA+TGG 0.455770 8_1:+34873415 Msa1191110:three_prime_UTR
CCCTCCTCAATGCGATCCTC+CGG 0.457796 8_1:-34871241 None:intergenic
TATTTGAAGGGAAATGGGTA+TGG 0.465084 8_1:+34871272 Msa1191110:CDS
TTCTAATCTTTGCAGTTACA+AGG 0.466052 8_1:+34871122 Msa1191110:CDS
CAGACCACTTGCATGAAGAA+TGG 0.466368 8_1:+34871349 Msa1191110:CDS
TCCTCCGGCAACACAACAAC+CGG 0.467189 8_1:-34871226 None:intergenic
GAGGGTTGCAATGTATTTGA+AGG 0.469336 8_1:+34871259 Msa1191110:CDS
GCATTCACTGGTGTTTACCT+GGG 0.470418 8_1:+34873299 Msa1191110:CDS
CTCACGTAGCATTGATGAAA+GGG 0.471007 8_1:-34872261 None:intergenic
CTCTATTAAATTAAAGTTGG+AGG 0.475359 8_1:-34874422 Msa1191120:CDS
AGACCACTTGCATGAAGAAT+GGG 0.475855 8_1:+34871350 Msa1191110:CDS
AGGAGCTGGGAATGGAAGCC+AGG 0.483811 8_1:+34873028 Msa1191110:intron
GGAGATGCTGATATCGAGCC+AGG 0.490893 8_1:-34873838 Msa1191120:CDS
ATCCAAAAGGCAAAAGGTGT+TGG 0.491457 8_1:-34873490 None:intergenic
CATAGGTGGAATTCTTTGGA+GGG 0.491727 8_1:-34871711 None:intergenic
CGGTATATTTGTGAATGATC+GGG 0.491737 8_1:-34874362 Msa1191120:CDS
CTCAGTTTATGGCGAGCGAA+AGG 0.496603 8_1:+34873225 Msa1191110:CDS
GCGGTATATTTGTGAATGAT+CGG 0.497341 8_1:-34874363 Msa1191120:CDS
ATTCTTTCTACACAAATTGG+AGG 0.504866 8_1:+34871380 Msa1191110:CDS
GTATGTCCCCAACACATTTG+TGG 0.505067 8_1:+34872599 Msa1191110:CDS
CATGGGACAGAAAAGACTCC+AGG 0.506317 8_1:-34873920 Msa1191120:intron
CATTGATATGAGATGGTTGA+AGG 0.506584 8_1:-34871035 None:intergenic
GCCGGAGGATCGCATTGAGG+AGG 0.515226 8_1:+34871240 Msa1191110:CDS
TCTTCTCCAGGAGCTGGGAA+TGG 0.516727 8_1:+34873020 Msa1191110:intron
CAACTCACTTCTTCATAAAG+AGG 0.520659 8_1:-34871310 None:intergenic
TATACAATCCAAAAGGCAAA+AGG 0.521640 8_1:-34873496 None:intergenic
TCATAGGTGGAATTCTTTGG+AGG 0.523486 8_1:-34871712 None:intergenic
GGATTTCATTCCATGTATCT+GGG 0.524709 8_1:-34873324 None:intergenic
GAAAAGAAAGCAAAATAGAA+TGG 0.525233 8_1:-34873468 None:intergenic
GTAACTTACCACAAATGTGT+TGG 0.530098 8_1:-34872607 None:intergenic
TACCTGGGGTCCCAGATACA+TGG 0.530934 8_1:+34873314 Msa1191110:CDS
AATTGGAGGTGGCAGCCTCA+TGG 0.531507 8_1:+34871394 Msa1191110:CDS
GTTGCAAATGTACATGTCAA+AGG 0.533678 8_1:-34873659 None:intergenic
TTCCATGTATCTGGGACCCC+AGG 0.534611 8_1:-34873316 None:intergenic
GGTTCGTCATATTGGGGCAC+AGG 0.534995 8_1:+34873091 Msa1191110:CDS
TCAGTTTATGGCGAGCGAAA+GGG 0.538195 8_1:+34873226 Msa1191110:CDS
TCTTCGAAGAGAATGCATCC+TGG 0.541502 8_1:+34873902 Msa1191110:three_prime_UTR
GTTCTGTTATACAATCCAAA+AGG 0.542969 8_1:-34873503 None:intergenic
GAATTAAATCGTCTGAGAGT+TGG 0.543056 8_1:+34873802 Msa1191110:three_prime_UTR
TGTTCGAGAGCTATGTTTGG+TGG 0.543784 8_1:+34872230 Msa1191110:CDS
CATTCACTGGTGTTTACCTG+GGG 0.545869 8_1:+34873300 Msa1191110:CDS
TGGTGTTCGAGAGCTATGTT+TGG 0.547200 8_1:+34872227 Msa1191110:CDS
CTTTCTACACAAATTGGAGG+TGG 0.550918 8_1:+34871383 Msa1191110:CDS
GTACAATCTGTAATTCCTGA+AGG 0.559209 8_1:+34871680 Msa1191110:CDS
TCTCCCATTCTTCATGCAAG+TGG 0.561570 8_1:-34871353 None:intergenic
TATGAAGATATTTAAAGTTG+AGG 0.563429 8_1:+34871730 Msa1191110:CDS
ATGCATTCTCTTCGAAGAAG+AGG 0.567019 8_1:-34873897 Msa1191120:CDS
AGCAAGCTTCTGAAACTGAG+TGG 0.568778 8_1:-34873744 Msa1191120:CDS
TAATTGGGTGATGTTCAATA+GGG 0.568867 8_1:-34873176 None:intergenic
TTAAATCGTCTGAGAGTTGG+TGG 0.569032 8_1:+34873805 Msa1191110:three_prime_UTR
CCGGAGGATCGCATTGAGGA+GGG 0.569780 8_1:+34871241 Msa1191110:CDS
ACTCACGTAGCATTGATGAA+AGG 0.570089 8_1:-34872262 None:intergenic
AACATGTGCAACAACTTCAA+AGG 0.571932 8_1:-34871587 None:intergenic
TAAATAAAACACAAATGTTG+TGG 0.572067 8_1:-34873690 None:intergenic
TAGCTAAGCATGGCAAACAT+TGG 0.579693 8_1:+34872188 Msa1191110:CDS
ATTTGAAGGGAAATGGGTAT+GGG 0.582984 8_1:+34871273 Msa1191110:CDS
GCAAGCTTCTGAAACTGAGT+GGG 0.583735 8_1:-34873743 Msa1191120:CDS
TGAAGTTGTTGCACATGTTG+AGG 0.585215 8_1:+34871591 Msa1191110:CDS
CTCATGGATGCAACCTCCCA+AGG 0.585468 8_1:+34871410 Msa1191110:CDS
CGTCACGACAGCATATAAGT+TGG 0.586816 8_1:+34872507 Msa1191110:CDS
AGGGTTGCAATGTATTTGAA+GGG 0.588210 8_1:+34871260 Msa1191110:CDS
TCAAGTCTTCGATTGATCGC+CGG 0.588728 8_1:+34871065 Msa1191110:CDS
TTCGAAGAAGAGGTTAGCAA+AGG 0.592548 8_1:-34873887 Msa1191120:CDS
ACTTTAAATATCTTCATAGG+TGG 0.594287 8_1:-34871725 None:intergenic
TGATCATGCAACAAATCATA+CGG 0.594915 8_1:+34872135 Msa1191110:CDS
AACTTACCACAAATGTGTTG+GGG 0.596950 8_1:-34872605 None:intergenic
GCAAATGTACATGTCAAAGG+TGG 0.597773 8_1:-34873656 None:intergenic
ACCGGTTGTTGTGTTGCCGG+AGG 0.598806 8_1:+34871225 Msa1191110:CDS
TGGCAAACATTGGCAAGGAG+TGG 0.599503 8_1:+34872198 Msa1191110:CDS
ATTGGAGACTCATTACAAAG+AGG 0.601036 8_1:+34871632 Msa1191110:CDS
ACGGCATGTCATCTGGTGGA+AGG 0.604816 8_1:+34871194 Msa1191110:CDS
CACTTCTTCATAAAGAGGAT+AGG 0.612582 8_1:-34871305 None:intergenic
CTTGACTCAATAGCTAAGCA+TGG 0.612907 8_1:+34872178 Msa1191110:CDS
CTCTACGGCATGTCATCTGG+TGG 0.613992 8_1:+34871190 Msa1191110:CDS
AGCATCATTCAGATTGATGG+TGG 0.614413 8_1:+34873418 Msa1191110:three_prime_UTR
TGTTGTAAATAATAATCAAG+TGG 0.615423 8_1:-34873717 None:intergenic
GTTGCCGGAGGATCGCATTG+AGG 0.623555 8_1:+34871237 Msa1191110:CDS
TCATACGGTACATAAACGGA+TGG 0.623999 8_1:+34872150 Msa1191110:CDS
AATGAATCATACCCAATACA+AGG 0.626400 8_1:+34873070 Msa1191110:CDS
AAAGTGTTGGCTACCTTGGG+AGG 0.628073 8_1:-34871423 None:intergenic
GTTGGTGGTAAATCTTGACC+TGG 0.628676 8_1:+34873820 Msa1191110:three_prime_UTR
CTTGGGAGGTTGCATCCATG+AGG 0.629461 8_1:-34871409 None:intergenic
CAAATGTACATGTCAAAGGT+GGG 0.631598 8_1:-34873655 None:intergenic
GAGATACAAACTGTAAACAA+AGG 0.634145 8_1:+34873549 Msa1191110:three_prime_UTR
TGCATCGATTGAATACTACT+GGG 0.637341 8_1:+34872087 Msa1191110:CDS
AAGCATGGCAAACATTGGCA+AGG 0.639024 8_1:+34872193 Msa1191110:CDS
GAGACAGCATTGATATGAGA+TGG 0.642148 8_1:-34871042 None:intergenic
TGGTCTGCTTGACCAAGTAA+GGG 0.642359 8_1:-34871333 None:intergenic
GATACAAAGCGTGAAGATAG+CGG 0.644538 8_1:-34874382 Msa1191120:CDS
ATACAAGGTTCGTCATATTG+GGG 0.647384 8_1:+34873085 Msa1191110:CDS
CTTTCGCTCGCCATAAACTG+AGG 0.649074 8_1:-34873224 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTTTAAGTTCACAAT+CGG - chr8_1:34871486-34871505 None:intergenic 15.0%
!! TAATAACTCTAGTTATTATT+AGG - chr8_1:34872796-34872815 None:intergenic 15.0%
!!! AAATTCGATTTTTTATTTTC+TGG + chr8_1:34872957-34872976 Msa1191110:intron 15.0%
!!! AACCTAAACAATATAATTTT+CGG + chr8_1:34873624-34873643 Msa1191110:three_prime_UTR 15.0%
!!! CTTGAATTTTATTCAAAAAA+TGG - chr8_1:34874029-34874048 Msa1191120:intron 15.0%
!!! CATTTTTTGAATAAAATTCA+AGG + chr8_1:34874027-34874046 Msa1191110:intron 15.0%
!!! CTATTTTAGTTGTTTTTTTT+TGG + chr8_1:34874109-34874128 Msa1191110:intron 15.0%
!! AGTTAAGTTATTCTATATAT+TGG - chr8_1:34874247-34874266 Msa1191120:intron 15.0%
!! ATATAATTGGGAAAATTGAT+TGG - chr8_1:34871093-34871112 None:intergenic 20.0%
!! GAAGTGAATACAATATAATT+GGG - chr8_1:34871105-34871124 None:intergenic 20.0%
!! AGAAGTGAATACAATATAAT+TGG - chr8_1:34871106-34871125 None:intergenic 20.0%
!! AACAAAAGAATGATGTTTAT+TGG + chr8_1:34871614-34871633 Msa1191110:CDS 20.0%
!! TCAACTTTAAATATCTTCAT+AGG - chr8_1:34871731-34871750 None:intergenic 20.0%
!!! TATGAAGATATTTAAAGTTG+AGG + chr8_1:34871730-34871749 Msa1191110:CDS 20.0%
!! TTAAGTTATTTATGAAAGCA+TGG - chr8_1:34871799-34871818 None:intergenic 20.0%
!! AATCAGACAAATTATTGAAT+TGG + chr8_1:34872429-34872448 Msa1191110:intron 20.0%
!!! ATTATCAAGTTTTGCTAATA+AGG + chr8_1:34872666-34872685 Msa1191110:intron 20.0%
!!! TATCAAAACTTTTCTTAACA+TGG + chr8_1:34873370-34873389 Msa1191110:exon 20.0%
!! TAAATAAAACACAAATGTTG+TGG - chr8_1:34873693-34873712 None:intergenic 20.0%
!! TGTTGTAAATAATAATCAAG+TGG - chr8_1:34873720-34873739 None:intergenic 20.0%
! ACTTTAAATATCTTCATAGG+TGG - chr8_1:34871728-34871747 None:intergenic 25.0%
! GACATAAATATTTGTGAGAT+TGG - chr8_1:34871914-34871933 None:intergenic 25.0%
!!! AAATTCCTATAGCTTTGTTT+TGG + chr8_1:34872053-34872072 Msa1191110:intron 25.0%
!! AAAAATACATTTTGAGCAAG+TGG - chr8_1:34872574-34872593 None:intergenic 25.0%
! GAAGAGAGATGTTAATTATT+AGG - chr8_1:34872877-34872896 None:intergenic 25.0%
!!! AAGAATTTATTTTCTTCTCC+AGG + chr8_1:34873008-34873027 Msa1191110:intron 25.0%
!! TTTTCTGTACTCTGATAATT+GGG - chr8_1:34873194-34873213 None:intergenic 25.0%
! TCTTAAACAGATATGCATAT+AGG - chr8_1:34873348-34873367 None:intergenic 25.0%
! GAAAAGAAAGCAAAATAGAA+TGG - chr8_1:34873471-34873490 None:intergenic 25.0%
! AGGCTAAAATCATAAACTAT+AGG - chr8_1:34873592-34873611 None:intergenic 25.0%
! TGCCGAAAATTATATTGTTT+AGG - chr8_1:34873629-34873648 None:intergenic 25.0%
! CATTTAGTAGAAAAGACTAA+TGG + chr8_1:34874287-34874306 Msa1191110:intron 25.0%
! CTCTATTAAATTAAAGTTGG+AGG - chr8_1:34874425-34874444 Msa1191120:CDS 25.0%
! ACGCTCTATTAAATTAAAGT+TGG - chr8_1:34874428-34874447 Msa1191120:CDS 25.0%
TTCTAATCTTTGCAGTTACA+AGG + chr8_1:34871122-34871141 Msa1191110:CDS 30.0%
CAATGTATTTGAAGGGAAAT+GGG + chr8_1:34871267-34871286 Msa1191110:CDS 30.0%
CAATTTGTGTAGAAAGAATC+AGG - chr8_1:34871379-34871398 None:intergenic 30.0%
CTGATTCTTTCTACACAAAT+TGG + chr8_1:34871377-34871396 Msa1191110:CDS 30.0%
ATTCTTTCTACACAAATTGG+AGG + chr8_1:34871380-34871399 Msa1191110:CDS 30.0%
! GTTAAAATCTGGAAAAGTGT+TGG - chr8_1:34871439-34871458 None:intergenic 30.0%
AACAGATCATAGACTCAAAT+TGG - chr8_1:34871658-34871677 None:intergenic 30.0%
ATTTGAGTCTATGATCTGTT+TGG + chr8_1:34871658-34871677 Msa1191110:CDS 30.0%
! GAAATTGATTCAACCATGAA+TGG - chr8_1:34872115-34872134 None:intergenic 30.0%
TGATCATGCAACAAATCATA+CGG + chr8_1:34872135-34872154 Msa1191110:CDS 30.0%
CAAATCATACGGTACATAAA+CGG + chr8_1:34872146-34872165 Msa1191110:CDS 30.0%
AGTACTTGAATGAATGTTCA+TGG + chr8_1:34872324-34872343 Msa1191110:intron 30.0%
!! TGTGCTTTTTACACAACTAT+AGG - chr8_1:34872356-34872375 None:intergenic 30.0%
! GTTGTGTAAAAAGCACAAAA+TGG + chr8_1:34872359-34872378 Msa1191110:intron 30.0%
!! AACATGTTTTGTTCCAGATA+TGG + chr8_1:34872457-34872476 Msa1191110:intron 30.0%
TTATATTCTTGGACTTCATC+TGG - chr8_1:34872487-34872506 None:intergenic 30.0%
! ATAAGTTGGCGTTAAAAACA+TGG + chr8_1:34872521-34872540 Msa1191110:CDS 30.0%
! TAAGTTGGCGTTAAAAACAT+GGG + chr8_1:34872522-34872541 Msa1191110:CDS 30.0%
TAACTTACCACAAATGTGTT+GGG - chr8_1:34872609-34872628 None:intergenic 30.0%
AAACATTCACCAAATCATGT+GGG - chr8_1:34872752-34872771 None:intergenic 30.0%
AATGAATCATACCCAATACA+AGG + chr8_1:34873070-34873089 Msa1191110:CDS 30.0%
AATATGACGAACCTTGTATT+GGG - chr8_1:34873084-34873103 None:intergenic 30.0%
AATACAAGGTTCGTCATATT+GGG + chr8_1:34873084-34873103 Msa1191110:CDS 30.0%
TAATTGGGTGATGTTCAATA+GGG - chr8_1:34873179-34873198 None:intergenic 30.0%
ATAATTGGGTGATGTTCAAT+AGG - chr8_1:34873180-34873199 None:intergenic 30.0%
! CTTTTCTGTACTCTGATAAT+TGG - chr8_1:34873195-34873214 None:intergenic 30.0%
! TGCAATCAGCAAAAGATTTT+GGG - chr8_1:34873282-34873301 None:intergenic 30.0%
! ATGCAATCAGCAAAAGATTT+TGG - chr8_1:34873283-34873302 None:intergenic 30.0%
TATACAATCCAAAAGGCAAA+AGG - chr8_1:34873499-34873518 None:intergenic 30.0%
GTTCTGTTATACAATCCAAA+AGG - chr8_1:34873506-34873525 None:intergenic 30.0%
GAGATACAAACTGTAAACAA+AGG + chr8_1:34873549-34873568 Msa1191110:three_prime_UTR 30.0%
AGTATGAACAACTAGCAATA+TGG - chr8_1:34873867-34873886 Msa1191120:CDS 30.0%
!!! CCATTACTGTCATTTTTCAT+GGG - chr8_1:34873940-34873959 Msa1191120:intron 30.0%
!!! TCCATTACTGTCATTTTTCA+TGG - chr8_1:34873941-34873960 Msa1191120:intron 30.0%
CATTGATATGAGATGGTTGA+AGG - chr8_1:34871038-34871057 None:intergenic 35.0%
TTGGGAAAATTGATTGGATC+CGG - chr8_1:34871087-34871106 None:intergenic 35.0%
AGGGTTGCAATGTATTTGAA+GGG + chr8_1:34871260-34871279 Msa1191110:CDS 35.0%
GCAATGTATTTGAAGGGAAA+TGG + chr8_1:34871266-34871285 Msa1191110:CDS 35.0%
TATTTGAAGGGAAATGGGTA+TGG + chr8_1:34871272-34871291 Msa1191110:CDS 35.0%
ATTTGAAGGGAAATGGGTAT+GGG + chr8_1:34871273-34871292 Msa1191110:CDS 35.0%
CACTTCTTCATAAAGAGGAT+AGG - chr8_1:34871308-34871327 None:intergenic 35.0%
CAACTCACTTCTTCATAAAG+AGG - chr8_1:34871313-34871332 None:intergenic 35.0%
ATCAAGGCGAAGTTAAAATC+TGG - chr8_1:34871450-34871469 None:intergenic 35.0%
! CTGAAGTCAAGAAAAGCATA+AGG - chr8_1:34871560-34871579 None:intergenic 35.0%
! CTTATGCTTTTCTTGACTTC+AGG + chr8_1:34871558-34871577 Msa1191110:intron 35.0%
AACATGTGCAACAACTTCAA+AGG - chr8_1:34871590-34871609 None:intergenic 35.0%
ATTGGAGACTCATTACAAAG+AGG + chr8_1:34871632-34871651 Msa1191110:CDS 35.0%
GTACAATCTGTAATTCCTGA+AGG + chr8_1:34871680-34871699 Msa1191110:CDS 35.0%
TCTTCATAGGTGGAATTCTT+TGG - chr8_1:34871718-34871737 None:intergenic 35.0%
!! ATGCATCGATTGAATACTAC+TGG + chr8_1:34872086-34872105 Msa1191110:CDS 35.0%
!! TGCATCGATTGAATACTACT+GGG + chr8_1:34872087-34872106 Msa1191110:CDS 35.0%
GTGAGTATATCTATAGACCT+TGG + chr8_1:34872279-34872298 Msa1191110:intron 35.0%
CGTTAAAAACATGGGCAAAT+TGG + chr8_1:34872530-34872549 Msa1191110:CDS 35.0%
! ATACATTTTGAGCAAGTGGT+TGG - chr8_1:34872570-34872589 None:intergenic 35.0%
AACTTACCACAAATGTGTTG+GGG - chr8_1:34872608-34872627 None:intergenic 35.0%
GTAACTTACCACAAATGTGT+TGG - chr8_1:34872610-34872629 None:intergenic 35.0%
GCAGAGTCACTCTTTAAATT+TGG - chr8_1:34872712-34872731 None:intergenic 35.0%
CAAACATTCACCAAATCATG+TGG - chr8_1:34872753-34872772 None:intergenic 35.0%
CAATATGACGAACCTTGTAT+TGG - chr8_1:34873085-34873104 None:intergenic 35.0%
CAATACAAGGTTCGTCATAT+TGG + chr8_1:34873083-34873102 Msa1191110:CDS 35.0%
ATACAAGGTTCGTCATATTG+GGG + chr8_1:34873085-34873104 Msa1191110:CDS 35.0%
TAGCTCTCTGTTCTTTAGTT+AGG - chr8_1:34873258-34873277 None:intergenic 35.0%
GGATTTCATTCCATGTATCT+GGG - chr8_1:34873327-34873346 None:intergenic 35.0%
AGGATTTCATTCCATGTATC+TGG - chr8_1:34873328-34873347 None:intergenic 35.0%
ACAAGCATCATTCAGATTGA+TGG + chr8_1:34873415-34873434 Msa1191110:three_prime_UTR 35.0%
!! TGATTTTAGCCTGTTCTTCA+TGG + chr8_1:34873600-34873619 Msa1191110:three_prime_UTR 35.0%
! TTTAGGTTTCCATGAAGAAC+AGG - chr8_1:34873612-34873631 None:intergenic 35.0%
CAAATGTACATGTCAAAGGT+GGG - chr8_1:34873658-34873677 None:intergenic 35.0%
GTTGCAAATGTACATGTCAA+AGG - chr8_1:34873662-34873681 None:intergenic 35.0%
GAATTAAATCGTCTGAGAGT+TGG + chr8_1:34873802-34873821 Msa1191110:three_prime_UTR 35.0%
GAACAACTAGCAATATGGTT+TGG - chr8_1:34873862-34873881 Msa1191120:CDS 35.0%
CCCATGAAAAATGACAGTAA+TGG + chr8_1:34873937-34873956 Msa1191110:intron 35.0%
CCAAAAGCTTAGATCGTATA+AGG - chr8_1:34874317-34874336 Msa1191120:CDS 35.0%
! CCTTATACGATCTAAGCTTT+TGG + chr8_1:34874314-34874333 Msa1191110:intron 35.0%
CGGTATATTTGTGAATGATC+GGG - chr8_1:34874365-34874384 Msa1191120:CDS 35.0%
GCGGTATATTTGTGAATGAT+CGG - chr8_1:34874366-34874385 Msa1191120:CDS 35.0%
!! GAGACAGCATTGATATGAGA+TGG - chr8_1:34871045-34871064 None:intergenic 40.0%
!! AGCCATGTTTTTCAGCTCTA+CGG + chr8_1:34871175-34871194 Msa1191110:CDS 40.0%
GAGGGTTGCAATGTATTTGA+AGG + chr8_1:34871259-34871278 Msa1191110:CDS 40.0%
AGACCACTTGCATGAAGAAT+GGG + chr8_1:34871350-34871369 Msa1191110:CDS 40.0%
CTTTCTACACAAATTGGAGG+TGG + chr8_1:34871383-34871402 Msa1191110:CDS 40.0%
ACTTCGCCTTGATTACTCTT+AGG + chr8_1:34871457-34871476 Msa1191110:intron 40.0%
CGGAAACCTAAGAGTAATCA+AGG - chr8_1:34871466-34871485 None:intergenic 40.0%
TGAAGTTGTTGCACATGTTG+AGG + chr8_1:34871591-34871610 Msa1191110:CDS 40.0%
CATAGGTGGAATTCTTTGGA+GGG - chr8_1:34871714-34871733 None:intergenic 40.0%
TCATAGGTGGAATTCTTTGG+AGG - chr8_1:34871715-34871734 None:intergenic 40.0%
!!! TCCTATAGCTTTGTTTTGGC+AGG + chr8_1:34872057-34872076 Msa1191110:intron 40.0%
TCCTGCCAAAACAAAGCTAT+AGG - chr8_1:34872061-34872080 None:intergenic 40.0%
TCATACGGTACATAAACGGA+TGG + chr8_1:34872150-34872169 Msa1191110:CDS 40.0%
CTTGACTCAATAGCTAAGCA+TGG + chr8_1:34872178-34872197 Msa1191110:CDS 40.0%
TAGCTAAGCATGGCAAACAT+TGG + chr8_1:34872188-34872207 Msa1191110:CDS 40.0%
!! CTCACGTAGCATTGATGAAA+GGG - chr8_1:34872264-34872283 None:intergenic 40.0%
!! ACTCACGTAGCATTGATGAA+AGG - chr8_1:34872265-34872284 None:intergenic 40.0%
GTATATCTATAGACCTTGGC+TGG + chr8_1:34872283-34872302 Msa1191110:intron 40.0%
!! CAAGTACTGAACTATGCTCA+CGG - chr8_1:34872312-34872331 None:intergenic 40.0%
TTCATCTGGTGATCCATATC+TGG - chr8_1:34872473-34872492 None:intergenic 40.0%
CTGTCGTGACGTTATATTCT+TGG - chr8_1:34872498-34872517 None:intergenic 40.0%
AAAGTGAAGCCCACATGATT+TGG + chr8_1:34872740-34872759 Msa1191110:intron 40.0%
! TTATTTTCTTCTCCAGGAGC+TGG + chr8_1:34873014-34873033 Msa1191110:intron 40.0%
! TATTTTCTTCTCCAGGAGCT+GGG + chr8_1:34873015-34873034 Msa1191110:intron 40.0%
!! CTTTTGCTGATTGCATTCAC+TGG + chr8_1:34873287-34873306 Msa1191110:CDS 40.0%
AGCATCATTCAGATTGATGG+TGG + chr8_1:34873418-34873437 Msa1191110:three_prime_UTR 40.0%
! TTCCAACACCTTTTGCCTTT+TGG + chr8_1:34873488-34873507 Msa1191110:three_prime_UTR 40.0%
! ATCCAAAAGGCAAAAGGTGT+TGG - chr8_1:34873493-34873512 None:intergenic 40.0%
GCAAATGTACATGTCAAAGG+TGG - chr8_1:34873659-34873678 None:intergenic 40.0%
TTAAATCGTCTGAGAGTTGG+TGG + chr8_1:34873805-34873824 Msa1191110:three_prime_UTR 40.0%
TTCGAAGAAGAGGTTAGCAA+AGG - chr8_1:34873890-34873909 Msa1191120:CDS 40.0%
ATGCATTCTCTTCGAAGAAG+AGG - chr8_1:34873900-34873919 Msa1191120:CDS 40.0%
TCAAGGAAACGATGAAGATG+TGG + chr8_1:34874044-34874063 Msa1191110:intron 40.0%
GATACAAAGCGTGAAGATAG+CGG - chr8_1:34874385-34874404 Msa1191120:CDS 40.0%
TCAAGTCTTCGATTGATCGC+CGG + chr8_1:34871065-34871084 Msa1191110:CDS 45.0%
GCTTGCTCTTCAAGCTATCT+AGG - chr8_1:34871153-34871172 None:intergenic 45.0%
TGCCGTAGAGCTGAAAAACA+TGG - chr8_1:34871180-34871199 None:intergenic 45.0%
TGGTGGAAGGAATCGATTAC+CGG + chr8_1:34871207-34871226 Msa1191110:CDS 45.0%
! ATTACCGGTTGTTGTGTTGC+CGG + chr8_1:34871222-34871241 Msa1191110:CDS 45.0%
AGAAGTGAGTTGCCCTTACT+TGG + chr8_1:34871321-34871340 Msa1191110:CDS 45.0%
TGGTCTGCTTGACCAAGTAA+GGG - chr8_1:34871336-34871355 None:intergenic 45.0%
CAGACCACTTGCATGAAGAA+TGG + chr8_1:34871349-34871368 Msa1191110:CDS 45.0%
TCTCCCATTCTTCATGCAAG+TGG - chr8_1:34871356-34871375 None:intergenic 45.0%
!! GGAAAAGTGTTGGCTACCTT+GGG - chr8_1:34871429-34871448 None:intergenic 45.0%
!! TGGAAAAGTGTTGGCTACCT+TGG - chr8_1:34871430-34871449 None:intergenic 45.0%
TGGAGGGATTTCTTTCCTTC+AGG - chr8_1:34871698-34871717 None:intergenic 45.0%
ATACTACTGGGCTCCATTCA+TGG + chr8_1:34872099-34872118 Msa1191110:CDS 45.0%
AAGCATGGCAAACATTGGCA+AGG + chr8_1:34872193-34872212 Msa1191110:CDS 45.0%
! TTGGCAAGGAGTGGACATTT+TGG + chr8_1:34872207-34872226 Msa1191110:CDS 45.0%
TGGTGTTCGAGAGCTATGTT+TGG + chr8_1:34872227-34872246 Msa1191110:CDS 45.0%
TGTTCGAGAGCTATGTTTGG+TGG + chr8_1:34872230-34872249 Msa1191110:CDS 45.0%
CGTCACGACAGCATATAAGT+TGG + chr8_1:34872507-34872526 Msa1191110:CDS 45.0%
GTATGTCCCCAACACATTTG+TGG + chr8_1:34872599-34872618 Msa1191110:CDS 45.0%
! AAGCAGTTTTCGTCACTTCC+TGG - chr8_1:34873049-34873068 None:intergenic 45.0%
GATGCTCACACCTCAGTTTA+TGG + chr8_1:34873214-34873233 Msa1191110:CDS 45.0%
TCAGTTTATGGCGAGCGAAA+GGG + chr8_1:34873226-34873245 Msa1191110:CDS 45.0%
TGCATTCACTGGTGTTTACC+TGG + chr8_1:34873298-34873317 Msa1191110:CDS 45.0%
GCATTCACTGGTGTTTACCT+GGG + chr8_1:34873299-34873318 Msa1191110:CDS 45.0%
CATTCACTGGTGTTTACCTG+GGG + chr8_1:34873300-34873319 Msa1191110:CDS 45.0%
!! GCAAGCTTCTGAAACTGAGT+GGG - chr8_1:34873746-34873765 Msa1191120:CDS 45.0%
!! AGCAAGCTTCTGAAACTGAG+TGG - chr8_1:34873747-34873766 Msa1191120:CDS 45.0%
CGTTGAGTTCACGTATGTTC+TGG + chr8_1:34873780-34873799 Msa1191110:three_prime_UTR 45.0%
!! GTTGGTGGTAAATCTTGACC+TGG + chr8_1:34873820-34873839 Msa1191110:three_prime_UTR 45.0%
TCTTCGAAGAGAATGCATCC+TGG + chr8_1:34873902-34873921 Msa1191110:three_prime_UTR 45.0%
GTGGTCTGCTTGACCAAGTA+AGG - chr8_1:34871337-34871356 None:intergenic 50.0%
!! AAAGTGTTGGCTACCTTGGG+AGG - chr8_1:34871426-34871445 None:intergenic 50.0%
TGGCAAACATTGGCAAGGAG+TGG + chr8_1:34872198-34872217 Msa1191110:CDS 50.0%
CTTTCGCTCGCCATAAACTG+AGG - chr8_1:34873227-34873246 None:intergenic 50.0%
CTCAGTTTATGGCGAGCGAA+AGG + chr8_1:34873225-34873244 Msa1191110:CDS 50.0%
CATGGGACAGAAAAGACTCC+AGG - chr8_1:34873923-34873942 Msa1191120:intron 50.0%
CAGCTCTACGGCATGTCATC+TGG + chr8_1:34871187-34871206 Msa1191110:CDS 55.0%
CTCTACGGCATGTCATCTGG+TGG + chr8_1:34871190-34871209 Msa1191110:CDS 55.0%
ACGGCATGTCATCTGGTGGA+AGG + chr8_1:34871194-34871213 Msa1191110:CDS 55.0%
TCCTCCGGCAACACAACAAC+CGG - chr8_1:34871229-34871248 None:intergenic 55.0%
AATTGGAGGTGGCAGCCTCA+TGG + chr8_1:34871394-34871413 Msa1191110:CDS 55.0%
CTTGGGAGGTTGCATCCATG+AGG - chr8_1:34871412-34871431 None:intergenic 55.0%
CTCATGGATGCAACCTCCCA+AGG + chr8_1:34871410-34871429 Msa1191110:CDS 55.0%
TCTTCTCCAGGAGCTGGGAA+TGG + chr8_1:34873020-34873039 Msa1191110:intron 55.0%
GGTTCGTCATATTGGGGCAC+AGG + chr8_1:34873091-34873110 Msa1191110:CDS 55.0%
TACCTGGGGTCCCAGATACA+TGG + chr8_1:34873314-34873333 Msa1191110:CDS 55.0%
! TTCCATGTATCTGGGACCCC+AGG - chr8_1:34873319-34873338 None:intergenic 55.0%
GGAGATGCTGATATCGAGCC+AGG - chr8_1:34873841-34873860 Msa1191120:CDS 55.0%
ACCGGTTGTTGTGTTGCCGG+AGG + chr8_1:34871225-34871244 Msa1191110:CDS 60.0%
GTTGCCGGAGGATCGCATTG+AGG + chr8_1:34871237-34871256 Msa1191110:CDS 60.0%
CCCTCCTCAATGCGATCCTC+CGG - chr8_1:34871244-34871263 None:intergenic 60.0%
CCGGAGGATCGCATTGAGGA+GGG + chr8_1:34871241-34871260 Msa1191110:CDS 60.0%
ATGCTCACGGAGACCAGCCA+AGG - chr8_1:34872299-34872318 None:intergenic 60.0%
TGGCTTCCATTCCCAGCTCC+TGG - chr8_1:34873029-34873048 None:intergenic 60.0%
AGGAGCTGGGAATGGAAGCC+AGG + chr8_1:34873028-34873047 Msa1191110:intron 60.0%
GCCGGAGGATCGCATTGAGG+AGG + chr8_1:34871240-34871259 Msa1191110:CDS 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 34871005 34874452 34871005 ID=Msa1191110;Name=Msa1191110
chr8_1 mRNA 34871005 34874452 34871005 ID=Msa1191110-mRNA-1;Parent=Msa1191110;Name=Msa1191110-mRNA-1;_AED=0.06;_eAED=0.06;_QI=50|1|1|1|0.8|0.66|6|682|417
chr8_1 exon 34871005 34871431 34871005 ID=Msa1191110-mRNA-1:exon:11583;Parent=Msa1191110-mRNA-1
chr8_1 exon 34871580 34871751 34871580 ID=Msa1191110-mRNA-1:exon:11584;Parent=Msa1191110-mRNA-1
chr8_1 exon 34872079 34872278 34872079 ID=Msa1191110-mRNA-1:exon:11585;Parent=Msa1191110-mRNA-1
chr8_1 exon 34872474 34872620 34872474 ID=Msa1191110-mRNA-1:exon:11586;Parent=Msa1191110-mRNA-1
chr8_1 exon 34873030 34873941 34873030 ID=Msa1191110-mRNA-1:exon:11587;Parent=Msa1191110-mRNA-1
chr8_1 exon 34874325 34874452 34874325 ID=Msa1191110-mRNA-1:exon:11588;Parent=Msa1191110-mRNA-1
chr8_1 five_prime_UTR 34871005 34871054 34871005 ID=Msa1191110-mRNA-1:five_prime_utr;Parent=Msa1191110-mRNA-1
chr8_1 CDS 34871055 34871431 34871055 ID=Msa1191110-mRNA-1:cds;Parent=Msa1191110-mRNA-1
chr8_1 CDS 34871580 34871751 34871580 ID=Msa1191110-mRNA-1:cds;Parent=Msa1191110-mRNA-1
chr8_1 CDS 34872079 34872278 34872079 ID=Msa1191110-mRNA-1:cds;Parent=Msa1191110-mRNA-1
chr8_1 CDS 34872474 34872620 34872474 ID=Msa1191110-mRNA-1:cds;Parent=Msa1191110-mRNA-1
chr8_1 CDS 34873030 34873387 34873030 ID=Msa1191110-mRNA-1:cds;Parent=Msa1191110-mRNA-1
chr8_1 three_prime_UTR 34873388 34873941 34873388 ID=Msa1191110-mRNA-1:three_prime_utr;Parent=Msa1191110-mRNA-1
chr8_1 three_prime_UTR 34874325 34874452 34874325 ID=Msa1191110-mRNA-1:three_prime_utr;Parent=Msa1191110-mRNA-1
Gene Sequence

>Msa1191110

ATGCTGTCTCTCAAGTCTTCGATTGATCGCCGGATCCAATCAATTTTCCCAATTATATTGTATTCACTTCTAATCTTTGCAGTTACAAGGTTAGTCCTAGATAGCTTGAAGAGCAAGCAAAGCCATGTTTTTCAGCTCTACGGCATGTCATCTGGTGGAAGGAATCGATTACCGGTTGTTGTGTTGCCGGAGGATCGCATTGAGGAGGGTTGCAATGTATTTGAAGGGAAATGGGTATGGGATAATGTGTCCTATCCTCTTTATGAAGAAGTGAGTTGCCCTTACTTGGTCAAGCAGACCACTTGCATGAAGAATGGGAGACCTGATTCTTTCTACACAAATTGGAGGTGGCAGCCTCATGGATGCAACCTCCCAAGGTTTGATCCTTTGAAGTTGTTGCACATGTTGAGGAACAAAAGAATGATGTTTATTGGAGACTCATTACAAAGAGGCCAATTTGAGTCTATGATCTGTTTGGTACAATCTGTAATTCCTGAAGGAAAGAAATCCCTCCAAAGAATTCCACCTATGAAGATATTTAAAGTTGAGGAGTTTAATGCATCGATTGAATACTACTGGGCTCCATTCATGGTTGAATCAATTTCTGATCATGCAACAAATCATACGGTACATAAACGGATGGTGATGCTTGACTCAATAGCTAAGCATGGCAAACATTGGCAAGGAGTGGACATTTTGGTGTTCGAGAGCTATGTTTGGTGGATGCACAGCCCTTTCATCAATGCTACATATGGATCACCAGATGAAGTCCAAGAATATAACGTCACGACAGCATATAAGTTGGCGTTAAAAACATGGGCAAATTGGTTAGAATCAAACATCCAACCACTTGCTCAAAATGTATTTTTCATGAGTATGTCCCCAACACATTTGTGGAGCTGGGAATGGAAGCCAGGAAGTGACGAAAACTGCTTCAATGAATCATACCCAATACAAGGTTCGTCATATTGGGGCACAGGCTCGAATCTTGAGATTATGAAGATATTACATGATTCACTACAAGAACTGAAAATAGATGTCACCCTATTGAACATCACCCAATTATCAGAGTACAGAAAAGATGCTCACACCTCAGTTTATGGCGAGCGAAAGGGCAAGCTCCTAACTAAAGAACAGAGAGCTAACCCAAAATCTTTTGCTGATTGCATTCACTGGTGTTTACCTGGGGTCCCAGATACATGGAATGAAATCCTATATGCATATCTGTTTAAGAACTATCAAAACTTTTCTTAA
Protein sequence

>Msa1191110

MLSLKSSIDRRIQSIFPIILYSLLIFAVTRLVLDSLKSKQSHVFQLYGMSSGGRNRLPVVVLPEDRIEEGCNVFEGKWVWDNVSYPLYEEVSCPYLVKQTTCMKNGRPDSFYTNWRWQPHGCNLPRFDPLKLLHMLRNKRMMFIGDSLQRGQFESMICLVQSVIPEGKKSLQRIPPMKIFKVEEFNASIEYYWAPFMVESISDHATNHTVHKRMVMLDSIAKHGKHWQGVDILVFESYVWWMHSPFINATYGSPDEVQEYNVTTAYKLALKTWANWLESNIQPLAQNVFFMSMSPTHLWSWEWKPGSDENCFNESYPIQGSSYWGTGSNLEIMKILHDSLQELKIDVTLLNITQLSEYRKDAHTSVYGERKGKLLTKEQRANPKSFADCIHWCLPGVPDTWNEILYAYLFKNYQNFS*