AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0309750


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0309750 MtrunA17_Chr2g0278341 99.123 228 2 0 1 228 1 228 7.20e-169 464
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0309750 AT1G25260.1 71.101 218 62 1 1 218 1 217 4.89e-113 323

Find 54 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCTTTGCAAAATCAAAATT+AGG 0.145118 2_4:-4390533 None:intergenic
TGTTTGTTTCTCTTAGATTT+TGG 0.161156 2_4:+4390445 None:intergenic
ATTCTAAATTGAAAGAGTTT+AGG 0.230383 2_4:-4390205 Msa0309750:CDS
CTTTGAAACTTTGTGAAGAT+TGG 0.248050 2_4:+4390091 None:intergenic
CACAAAGAATTGATAATTAA+TGG 0.257611 2_4:-4390290 Msa0309750:CDS
TTCTAAATTGAAAGAGTTTA+GGG 0.261467 2_4:-4390204 Msa0309750:CDS
CCTTTGCAAAATCAAAATTA+GGG 0.289950 2_4:-4390532 None:intergenic
TGATAATATAAACTGAATAT+TGG 0.307619 2_4:+4387427 None:intergenic
CAGCAGGGATGTGGCTTGTA+TGG 0.319458 2_4:-4387497 Msa0309750:three_prime_UTR
AGAGCAGTTCACACATGATA+TGG 0.322264 2_4:-4388715 Msa0309750:CDS
GACTGAACCTGGTTTGTAGA+TGG 0.358071 2_4:-4387727 Msa0309750:CDS
TTTGAAACTTTGTGAAGATT+GGG 0.382034 2_4:+4390092 None:intergenic
ACCTGAAGCATCTCGTATAC+TGG 0.389289 2_4:-4388504 Msa0309750:intron
GAACAGGCATGCCTTGCTTC+CGG 0.401326 2_4:+4388682 None:intergenic
AAAGTAATGCAAGTTGCTAT+TGG 0.403753 2_4:-4390140 Msa0309750:CDS
CAGCTATTGCGTGGAGATGC+TGG 0.406333 2_4:-4389493 Msa0309750:CDS
AAAATTTGATTCTTAAGTTA+CGG 0.406742 2_4:+4387473 None:intergenic
GTACCTTTATTTAACCGAAC+AGG 0.425105 2_4:+4388666 None:intergenic
ATGCCTGTTCGGTTAAATAA+AGG 0.445190 2_4:-4388669 Msa0309750:intron
ACTGAACCTGGTTTGTAGAT+GGG 0.448280 2_4:-4387726 Msa0309750:CDS
TAGGCTGTTTAATGAATTTG+AGG 0.448398 2_4:-4389124 Msa0309750:CDS
ATGTTGAAGATTACAAGATA+TGG 0.449326 2_4:-4387625 Msa0309750:three_prime_UTR
ACCAGTATACGAGATGCTTC+AGG 0.450575 2_4:+4388503 None:intergenic
TCCAAAATTCACAGGTGTTG+TGG 0.453240 2_4:-4388573 Msa0309750:intron
GGAAGCAAGGCATGCCTGTT+CGG 0.453618 2_4:-4388680 Msa0309750:CDS
TCATGTGTGAACTGCTCTAA+AGG 0.461609 2_4:+4388720 None:intergenic
ATGCCTTGCTTCCGGAGAAA+AGG 0.467064 2_4:+4388690 None:intergenic
GGATGCGACTTTGCAAGAAC+AGG 0.475150 2_4:-4389102 Msa0309750:CDS
GGTGTGGATGCAATTTACTT+TGG 0.475626 2_4:-4387604 Msa0309750:three_prime_UTR
CAATCTTCACAAAGTTTCAA+AGG 0.483461 2_4:-4390090 Msa0309750:intron
GACTTTGTTGTTTGTGAGGA+GGG 0.491569 2_4:-4388539 Msa0309750:CDS
GGCTACGTTTCGACTGAACC+TGG 0.495680 2_4:-4387738 Msa0309750:CDS
AAAATTTCACAGTCACATTG+AGG 0.502429 2_4:-4390498 Msa0309750:five_prime_UTR
AGGAAGCATTGCCACCGAAA+AGG 0.510055 2_4:-4389082 Msa0309750:intron
GAACTCTACATTGATGGGCC+TGG 0.523108 2_4:-4387686 Msa0309750:CDS
AGGCTGTTTAATGAATTTGA+GGG 0.523767 2_4:-4389123 Msa0309750:CDS
GTGGATGCAATTTACTTTGG+AGG 0.524614 2_4:-4387601 Msa0309750:three_prime_UTR
CTGAACCTGGTTTGTAGATG+GGG 0.535144 2_4:-4387725 Msa0309750:CDS
CATTCAACATCTGAATCGCC+AGG 0.535824 2_4:+4387668 None:intergenic
GATACAGTACTATGTAGTAT+TGG 0.536486 2_4:-4387563 Msa0309750:three_prime_UTR
ACTGTTTCAGGTTGAACTCA+AGG 0.537015 2_4:-4388748 Msa0309750:intron
GCGTTTGATGGGAAATATGA+TGG 0.540790 2_4:-4387759 Msa0309750:CDS
TTCTGACTTTGTTGTTTGTG+AGG 0.545701 2_4:-4388543 Msa0309750:CDS
AAATTTCACAGTCACATTGA+GGG 0.552927 2_4:-4390497 Msa0309750:five_prime_UTR
TGACTTTGTTGTTTGTGAGG+AGG 0.559551 2_4:-4388540 Msa0309750:CDS
TGTCTAAAGAAGAAGTTGAA+AGG 0.565730 2_4:-4389453 Msa0309750:intron
CAGAACCCCATCTACAAACC+AGG 0.589817 2_4:+4387720 None:intergenic
CGAGATGCTTCAGGTGACAA+AGG 0.595978 2_4:+4388512 None:intergenic
GGTTTGTAGATGGGGTTCTG+AGG 0.610326 2_4:-4387717 Msa0309750:CDS
AGTACTGTATCACTACATCA+AGG 0.640398 2_4:+4387575 None:intergenic
TTTCAGGTTGAACTCAAGGA+GGG 0.645581 2_4:-4388744 Msa0309750:intron
GAAGATTACAAGATATGGTG+TGG 0.670814 2_4:-4387620 Msa0309750:three_prime_UTR
GTTTCAGGTTGAACTCAAGG+AGG 0.696156 2_4:-4388745 Msa0309750:intron
AAATCTAAGAGAAACAAACA+AGG 0.734245 2_4:-4390442 Msa0309750:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGTTTTATTTTTTTGTTG+TGG - chr2_4:4387883-4387902 Msa0309750:intron 15.0%
!! AAAAAAAAAATCAAACCAAA+CGG + chr2_4:4388035-4388054 None:intergenic 15.0%
!! ATATTCATAAAAAATGTAAG+AGG + chr2_4:4388379-4388398 None:intergenic 15.0%
!!! TTTTTATTGATGCTATTTAT+AGG - chr2_4:4388778-4388797 Msa0309750:intron 15.0%
!! ACATAAAAATGAAAGATATA+GGG + chr2_4:4389714-4389733 None:intergenic 15.0%
!! TACATAAAAATGAAAGATAT+AGG + chr2_4:4389715-4389734 None:intergenic 15.0%
!! AACTAAAAAGTAATTAATGA+TGG + chr2_4:4389858-4389877 None:intergenic 15.0%
!! AAAATTTGATTCTTAAGTTA+CGG + chr2_4:4390451-4390470 None:intergenic 15.0%
!! TGATAATATAAACTGAATAT+TGG + chr2_4:4390497-4390516 None:intergenic 15.0%
!!! CACAAAGAATTGATAATTAA+TGG - chr2_4:4387631-4387650 Msa0309750:three_prime_UTR 20.0%
!! ATTCTAAATTGAAAGAGTTT+AGG - chr2_4:4387716-4387735 Msa0309750:CDS 20.0%
!! TTCTAAATTGAAAGAGTTTA+GGG - chr2_4:4387717-4387736 Msa0309750:CDS 20.0%
!!! ATGTGATTTTGATTAGTTTT+TGG - chr2_4:4387915-4387934 Msa0309750:intron 20.0%
!!! ATTAGTTTTTGGAGATTTTT+AGG - chr2_4:4387926-4387945 Msa0309750:intron 20.0%
!!! ATGCAAATAAATAAGCTTTT+AGG - chr2_4:4388081-4388100 Msa0309750:intron 20.0%
!!! AAATTTGCTTGAATAAACAT+TGG - chr2_4:4388671-4388690 Msa0309750:CDS 20.0%
!! AAATAGCATCAATAAAAATC+AGG + chr2_4:4388776-4388795 None:intergenic 20.0%
!!! TCATTTTCTTAAATCATTAC+CGG + chr2_4:4388978-4388997 None:intergenic 20.0%
!! GAAATTAGTAACACTAAATA+TGG + chr2_4:4389611-4389630 None:intergenic 20.0%
!!! TATTTAGTGTTACTAATTTC+AGG - chr2_4:4389611-4389630 Msa0309750:intron 20.0%
!! AAAAAGTAATTAATGATGGT+GGG + chr2_4:4389854-4389873 None:intergenic 20.0%
!! TAAAAAGTAATTAATGATGG+TGG + chr2_4:4389855-4389874 None:intergenic 20.0%
!! TAGAACATTACTATTTAACA+AGG + chr2_4:4389998-4390017 None:intergenic 20.0%
!! ATTAATTACTTCAATAACCA+AGG + chr2_4:4390034-4390053 None:intergenic 20.0%
!!! TTGAAGTAATTAATTAGTCT+CGG - chr2_4:4390040-4390059 Msa0309750:intron 20.0%
!!! TTGTGAACTAGAAATATTTT+TGG - chr2_4:4390469-4390488 Msa0309750:exon 20.0%
!!! TGTTTGTTTCTCTTAGATTT+TGG + chr2_4:4387479-4387498 None:intergenic 25.0%
! AAATCTAAGAGAAACAAACA+AGG - chr2_4:4387479-4387498 Msa0309750:three_prime_UTR 25.0%
! AATTGAAGAAAAAAACACGA+TGG - chr2_4:4387547-4387566 Msa0309750:three_prime_UTR 25.0%
!! TTTGAAACTTTGTGAAGATT+GGG + chr2_4:4387832-4387851 None:intergenic 25.0%
! AGCTAAAATTGTATCTTCAT+CGG - chr2_4:4388124-4388143 Msa0309750:intron 25.0%
! TATTATTGATAAGCTTGTCA+AGG + chr2_4:4388169-4388188 None:intergenic 25.0%
!!! TCATTTGAGAAGTTGTTTTT+CGG + chr2_4:4388246-4388265 None:intergenic 25.0%
!!! TTTTTGAAGATCTGTAACAA+AGG - chr2_4:4388281-4388300 Msa0309750:intron 25.0%
! TATAGTAGCTGATATTCAAT+TGG - chr2_4:4388603-4388622 Msa0309750:intron 25.0%
!! CTGATATTCAATTGGTAATT+TGG - chr2_4:4388611-4388630 Msa0309750:intron 25.0%
!! TGATATGCTAAACATGTTTT+TGG - chr2_4:4388642-4388661 Msa0309750:intron 25.0%
!! GATATGCTAAACATGTTTTT+GGG - chr2_4:4388643-4388662 Msa0309750:intron 25.0%
!!! ATATGCTAAACATGTTTTTG+GGG - chr2_4:4388644-4388663 Msa0309750:intron 25.0%
!!! ATCGTTAACCTTTTTCAATA+GGG - chr2_4:4388694-4388713 Msa0309750:CDS 25.0%
! ATTATAGGTTTCTACTAACA+AGG + chr2_4:4388915-4388934 None:intergenic 25.0%
! AAGAAAATGACATAACTGAA+TGG - chr2_4:4388988-4389007 Msa0309750:intron 25.0%
!! ACTCATTCAATTAAAAGTGT+TGG - chr2_4:4389045-4389064 Msa0309750:intron 25.0%
!!! GTCAATTATTAGTCTTCAAT+TGG + chr2_4:4389325-4389344 None:intergenic 25.0%
! TAAAAATGAAAGATATAGGG+AGG + chr2_4:4389711-4389730 None:intergenic 25.0%
! CAAACAAGAAAAAATCAATG+GGG + chr2_4:4389763-4389782 None:intergenic 25.0%
! CCAAACAAGAAAAAATCAAT+GGG + chr2_4:4389764-4389783 None:intergenic 25.0%
!!! CCATTGATTTTTTCTTGTTT+GGG - chr2_4:4389762-4389781 Msa0309750:intron 25.0%
! TAGACACATAAAATAGATAG+TGG - chr2_4:4389809-4389828 Msa0309750:intron 25.0%
! AGACACATAAAATAGATAGT+GGG - chr2_4:4389810-4389829 Msa0309750:intron 25.0%
! GAAATGGAGAGAATAATAAA+TGG - chr2_4:4389915-4389934 Msa0309750:intron 25.0%
! TGATGTACATACTATAACAA+TGG + chr2_4:4390101-4390120 None:intergenic 25.0%
!! ATTTTGAACTCTACATTGAT+GGG - chr2_4:4390230-4390249 Msa0309750:CDS 25.0%
! ATGTTGAAGATTACAAGATA+TGG - chr2_4:4390296-4390315 Msa0309750:CDS 25.0%
AAAATTTCACAGTCACATTG+AGG - chr2_4:4387423-4387442 Msa0309750:three_prime_UTR 30.0%
AAATTTCACAGTCACATTGA+GGG - chr2_4:4387424-4387443 Msa0309750:three_prime_UTR 30.0%
!! GATTTTGGCATTTTGAACTA+TGG + chr2_4:4387464-4387483 None:intergenic 30.0%
CTTTCAAAGACAACGAAAAA+AGG - chr2_4:4387601-4387620 Msa0309750:three_prime_UTR 30.0%
!!! TCAAGTAGCAAGTTTTTTCT+TGG - chr2_4:4387751-4387770 Msa0309750:CDS 30.0%
AAAGTAATGCAAGTTGCTAT+TGG - chr2_4:4387781-4387800 Msa0309750:intron 30.0%
!! CTTTGAAACTTTGTGAAGAT+TGG + chr2_4:4387833-4387852 None:intergenic 30.0%
CAATCTTCACAAAGTTTCAA+AGG - chr2_4:4387831-4387850 Msa0309750:intron 30.0%
!! TTGGAGATTTTTAGGAAAAG+CGG - chr2_4:4387934-4387953 Msa0309750:intron 30.0%
!! ATTTTCTGAGAAGCTACTAA+TGG - chr2_4:4388008-4388027 Msa0309750:intron 30.0%
!! TTTTCTGAGAAGCTACTAAT+GGG - chr2_4:4388009-4388028 Msa0309750:intron 30.0%
ACAAAATAAGCCAATCCAAA+CGG - chr2_4:4388218-4388237 Msa0309750:intron 30.0%
!!! CATTTGAGAAGTTGTTTTTC+GGG + chr2_4:4388245-4388264 None:intergenic 30.0%
TGTCTAAAGAAGAAGTTGAA+AGG - chr2_4:4388468-4388487 Msa0309750:intron 30.0%
!!! GATCGTTAACCTTTTTCAAT+AGG - chr2_4:4388693-4388712 Msa0309750:CDS 30.0%
!!! TCGTTAACCTTTTTCAATAG+GGG - chr2_4:4388695-4388714 Msa0309750:CDS 30.0%
CATCAATAAAAATCAGGTTC+TGG + chr2_4:4388770-4388789 None:intergenic 30.0%
TAGGCTGTTTAATGAATTTG+AGG - chr2_4:4388797-4388816 Msa0309750:intron 30.0%
AGGCTGTTTAATGAATTTGA+GGG - chr2_4:4388798-4388817 Msa0309750:intron 30.0%
!! CTTTTAATTGAATGAGTGTC+TGG + chr2_4:4389042-4389061 None:intergenic 30.0%
!! ATTATTAGTCTTCAATTGGC+AGG + chr2_4:4389321-4389340 None:intergenic 30.0%
CTGATATTGCAAGTTCTATT+GGG + chr2_4:4389505-4389524 None:intergenic 30.0%
!! GAAGTAGTTATTAGGTTGAA+GGG + chr2_4:4389569-4389588 None:intergenic 30.0%
GGATAATGTGAACAATCAAA+TGG + chr2_4:4389742-4389761 None:intergenic 30.0%
!!! CCCATTGATTTTTTCTTGTT+TGG - chr2_4:4389761-4389780 Msa0309750:intron 30.0%
CCCAAACAAGAAAAAATCAA+TGG + chr2_4:4389765-4389784 None:intergenic 30.0%
!!! TTGATTTTTTCTTGTTTGGG+TGG - chr2_4:4389765-4389784 Msa0309750:intron 30.0%
!!! TGATTTTTTCTTGTTTGGGT+GGG - chr2_4:4389766-4389785 Msa0309750:intron 30.0%
! TATAACAATGGTGCTAATTG+AGG + chr2_4:4390089-4390108 None:intergenic 30.0%
ACATCATCAACGTTATAATG+TGG - chr2_4:4390115-4390134 Msa0309750:CDS 30.0%
! GATTTTGAACTCTACATTGA+TGG - chr2_4:4390229-4390248 Msa0309750:CDS 30.0%
GATACAGTACTATGTAGTAT+TGG - chr2_4:4390358-4390377 Msa0309750:intron 30.0%
! TTGATGAATGTATTTTCAGC+AGG - chr2_4:4390408-4390427 Msa0309750:intron 30.0%
! TGATGAATGTATTTTCAGCA+GGG - chr2_4:4390409-4390428 Msa0309750:intron 30.0%
! TTTGGCATTTTGAACTATGG+AGG + chr2_4:4387461-4387480 None:intergenic 35.0%
AAGACAACGAAAAAAGGAAG+AGG - chr2_4:4387607-4387626 Msa0309750:three_prime_UTR 35.0%
CAAAATAAGCCAATCCAAAC+GGG - chr2_4:4388219-4388238 Msa0309750:intron 35.0%
!!! CGTTAACCTTTTTCAATAGG+GGG - chr2_4:4388696-4388715 Msa0309750:CDS 35.0%
!!! GTTAACCTTTTTCAATAGGG+GGG - chr2_4:4388697-4388716 Msa0309750:CDS 35.0%
! CTAGATTCAACCTACCTTTT+CGG + chr2_4:4388856-4388875 None:intergenic 35.0%
!! TAAAAGTGTTGGTGCTACAA+AGG - chr2_4:4389056-4389075 Msa0309750:intron 35.0%
TTTCAAGATCTGACTGTTTC+AGG - chr2_4:4389161-4389180 Msa0309750:intron 35.0%
! ATGATATGGAACCTTTTCTC+CGG - chr2_4:4389220-4389239 Msa0309750:intron 35.0%
ATGCCTGTTCGGTTAAATAA+AGG - chr2_4:4389252-4389271 Msa0309750:intron 35.0%
! GTACCTTTATTTAACCGAAC+AGG + chr2_4:4389258-4389277 None:intergenic 35.0%
TTGACGTTTCCAAAATTCAC+AGG - chr2_4:4389340-4389359 Msa0309750:intron 35.0%
!! TTCTGACTTTGTTGTTTGTG+AGG - chr2_4:4389378-4389397 Msa0309750:intron 35.0%
CCTGATATTGCAAGTTCTAT+TGG + chr2_4:4389506-4389525 None:intergenic 35.0%
CCAATAGAACTTGCAATATC+AGG - chr2_4:4389503-4389522 Msa0309750:intron 35.0%
!! GGAAGTAGTTATTAGGTTGA+AGG + chr2_4:4389570-4389589 None:intergenic 35.0%
ATAGGCAGGAAGTAGTTATT+AGG + chr2_4:4389577-4389596 None:intergenic 35.0%
TAATAACTACTTCCTGCCTA+TGG - chr2_4:4389576-4389595 Msa0309750:intron 35.0%
AATAACTACTTCCTGCCTAT+GGG - chr2_4:4389577-4389596 Msa0309750:intron 35.0%
AATATGGTCGAATAACCCAT+AGG + chr2_4:4389595-4389614 None:intergenic 35.0%
TGTCTCTATATCTCTCCAAA+TGG - chr2_4:4389890-4389909 Msa0309750:intron 35.0%
ATCTCTCCAAATGGATGAAA+TGG - chr2_4:4389899-4389918 Msa0309750:intron 35.0%
TTCTCTCCATTTCATCCATT+TGG + chr2_4:4389908-4389927 None:intergenic 35.0%
GGAGAGAATAATAAATGGAG+AGG - chr2_4:4389920-4389939 Msa0309750:intron 35.0%
AATAACCAAGGTCAAGATGT+TGG + chr2_4:4390022-4390041 None:intergenic 35.0%
GAAGATTACAAGATATGGTG+TGG - chr2_4:4390301-4390320 Msa0309750:CDS 35.0%
AGTACTGTATCACTACATCA+AGG + chr2_4:4390349-4390368 None:intergenic 35.0%
!! GTTTTGTTACAGCTATTGCG+TGG - chr2_4:4388419-4388438 Msa0309750:intron 40.0%
GAAAACCCCCCTATTGAAAA+AGG + chr2_4:4388705-4388724 None:intergenic 40.0%
TGTCTGTGTAGGTGCATTAT+AGG + chr2_4:4388930-4388949 None:intergenic 40.0%
!! TCGACATGTCAGTGTTGTTT+CGG + chr2_4:4388953-4388972 None:intergenic 40.0%
!! ACTGTTTCAGGTTGAACTCA+AGG - chr2_4:4389173-4389192 Msa0309750:intron 40.0%
!! TTTCAGGTTGAACTCAAGGA+GGG - chr2_4:4389177-4389196 Msa0309750:intron 40.0%
TCATGTGTGAACTGCTCTAA+AGG + chr2_4:4389204-4389223 None:intergenic 40.0%
AGAGCAGTTCACACATGATA+TGG - chr2_4:4389206-4389225 Msa0309750:intron 40.0%
! TCCAAAATTCACAGGTGTTG+TGG - chr2_4:4389348-4389367 Msa0309750:intron 40.0%
! TCCACAACACCTGTGAATTT+TGG + chr2_4:4389352-4389371 None:intergenic 40.0%
!! TGACTTTGTTGTTTGTGAGG+AGG - chr2_4:4389381-4389400 Msa0309750:intron 40.0%
!! GACTTTGTTGTTTGTGAGGA+GGG - chr2_4:4389382-4389401 Msa0309750:intron 40.0%
AGTTGAAGTTGCACTACTCT+AGG - chr2_4:4389534-4389553 Msa0309750:intron 40.0%
GTTGAAGTTGCACTACTCTA+GGG - chr2_4:4389535-4389554 Msa0309750:intron 40.0%
ACTCCACTTCGTTCTATCTT+TGG + chr2_4:4389637-4389656 None:intergenic 40.0%
AAGATAGAACGAAGTGGAGT+AGG - chr2_4:4389637-4389656 Msa0309750:intron 40.0%
!!! TTTTTTCTTGTTTGGGTGGG+TGG - chr2_4:4389769-4389788 Msa0309750:intron 40.0%
! TAGTGGGTCCTACTATTATG+TGG - chr2_4:4389826-4389845 Msa0309750:intron 40.0%
AGTGGGTCCTACTATTATGT+GGG - chr2_4:4389827-4389846 Msa0309750:intron 40.0%
TCTATCCAACATCTTGACCT+TGG - chr2_4:4390014-4390033 Msa0309750:intron 40.0%
! TGCTTTTGACAGCGTTTGAT+GGG - chr2_4:4390151-4390170 Msa0309750:CDS 40.0%
GCGTTTGATGGGAAATATGA+TGG - chr2_4:4390162-4390181 Msa0309750:CDS 40.0%
! ACTGAACCTGGTTTGTAGAT+GGG - chr2_4:4390195-4390214 Msa0309750:CDS 40.0%
GGTGTGGATGCAATTTACTT+TGG - chr2_4:4390317-4390336 Msa0309750:CDS 40.0%
GTGGATGCAATTTACTTTGG+AGG - chr2_4:4390320-4390339 Msa0309750:CDS 40.0%
! ATGTATTTTCAGCAGGGATG+TGG - chr2_4:4390415-4390434 Msa0309750:intron 40.0%
! GATTCAACCTACCTTTTCGG+TGG + chr2_4:4388853-4388872 None:intergenic 45.0%
!! TGTTGTTTCGGTGTCTGTGT+AGG + chr2_4:4388941-4388960 None:intergenic 45.0%
!! GTTTCAGGTTGAACTCAAGG+AGG - chr2_4:4389176-4389195 Msa0309750:intron 45.0%
! ACCTGAAGCATCTCGTATAC+TGG - chr2_4:4389417-4389436 Msa0309750:intron 45.0%
ACCAGTATACGAGATGCTTC+AGG + chr2_4:4389421-4389440 None:intergenic 45.0%
TAGCACAGAGCAGAGGATTT+GGG + chr2_4:4389459-4389478 None:intergenic 45.0%
ATAGCACAGAGCAGAGGATT+TGG + chr2_4:4389460-4389479 None:intergenic 45.0%
! TGTGCTGGCGAACATAAATG+TGG - chr2_4:4389479-4389498 Msa0309750:CDS 45.0%
AGGCCAAAGATAGAACGAAG+TGG - chr2_4:4389631-4389650 Msa0309750:intron 45.0%
ATGGAGAGGATCTTAACTCG+TGG - chr2_4:4389934-4389953 Msa0309750:intron 45.0%
TGGAGAGGATCTTAACTCGT+GGG - chr2_4:4389935-4389954 Msa0309750:intron 45.0%
!! CTGCTTTTGACAGCGTTTGA+TGG - chr2_4:4390150-4390169 Msa0309750:CDS 45.0%
! GACTGAACCTGGTTTGTAGA+TGG - chr2_4:4390194-4390213 Msa0309750:CDS 45.0%
! CTGAACCTGGTTTGTAGATG+GGG - chr2_4:4390196-4390215 Msa0309750:CDS 45.0%
CATTCAACATCTGAATCGCC+AGG + chr2_4:4390256-4390275 None:intergenic 45.0%
! GAAGCTACTAATGGGCCGTT+TGG - chr2_4:4388017-4388036 Msa0309750:intron 50.0%
!!! TTTTTCGGGCCCGTTTGGAT+TGG + chr2_4:4388231-4388250 None:intergenic 50.0%
!!! AGTTGTTTTTCGGGCCCGTT+TGG + chr2_4:4388236-4388255 None:intergenic 50.0%
GGATGCGACTTTGCAAGAAC+AGG - chr2_4:4388819-4388838 Msa0309750:intron 50.0%
!! AGGAAGCATTGCCACCGAAA+AGG - chr2_4:4388839-4388858 Msa0309750:intron 50.0%
AGCATTGCCACCGAAAAGGT+AGG - chr2_4:4388843-4388862 Msa0309750:intron 50.0%
CAACACTGACATGTCGACAC+CGG - chr2_4:4388956-4388975 Msa0309750:intron 50.0%
GCGCAACTACAGGATATGTC+AGG + chr2_4:4389097-4389116 None:intergenic 50.0%
! GAACCTTTTCTCCGGAAGCA+AGG - chr2_4:4389228-4389247 Msa0309750:intron 50.0%
ATGCCTTGCTTCCGGAGAAA+AGG + chr2_4:4389234-4389253 None:intergenic 50.0%
CGAGATGCTTCAGGTGACAA+AGG + chr2_4:4389412-4389431 None:intergenic 50.0%
TGGTCGAATAACCCATAGGC+AGG + chr2_4:4389591-4389610 None:intergenic 50.0%
TTTGGGTGGGTGGTGCAATT+TGG - chr2_4:4389779-4389798 Msa0309750:intron 50.0%
GGTGGGACCCACATAATAGT+AGG + chr2_4:4389837-4389856 None:intergenic 50.0%
GGAGAGGATCTTAACTCGTG+GGG - chr2_4:4389936-4389955 Msa0309750:intron 50.0%
GAGAGGATCTTAACTCGTGG+GGG - chr2_4:4389937-4389956 Msa0309750:intron 50.0%
CAGAACCCCATCTACAAACC+AGG + chr2_4:4390204-4390223 None:intergenic 50.0%
GGTTTGTAGATGGGGTTCTG+AGG - chr2_4:4390204-4390223 Msa0309750:CDS 50.0%
! GAACTCTACATTGATGGGCC+TGG - chr2_4:4390235-4390254 Msa0309750:CDS 50.0%
CAGCTATTGCGTGGAGATGC+TGG - chr2_4:4388428-4388447 Msa0309750:intron 55.0%
CCAGATGCATGCGCAACTAC+AGG + chr2_4:4389107-4389126 None:intergenic 55.0%
CCTGTAGTTGCGCATGCATC+TGG - chr2_4:4389104-4389123 Msa0309750:CDS 55.0%
GAACAGGCATGCCTTGCTTC+CGG + chr2_4:4389242-4389261 None:intergenic 55.0%
GGAAGCAAGGCATGCCTGTT+CGG - chr2_4:4389241-4389260 Msa0309750:intron 55.0%
CAGCACATAGCACAGAGCAG+AGG + chr2_4:4389466-4389485 None:intergenic 55.0%
CTCTGCTCTGTGCTATGTGC+TGG - chr2_4:4389464-4389483 Msa0309750:CDS 55.0%
GGCTACGTTTCGACTGAACC+TGG - chr2_4:4390183-4390202 Msa0309750:CDS 55.0%
! CAGCAGGGATGTGGCTTGTA+TGG - chr2_4:4390424-4390443 Msa0309750:intron 55.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 4387396 4390547 4387396 ID=Msa0309750;Name=Msa0309750
chr2_4 mRNA 4387396 4390547 4387396 ID=Msa0309750-mRNA-1;Parent=Msa0309750;Name=Msa0309750-mRNA-1;_AED=0.04;_eAED=0.04;_QI=77|1|1|1|1|1|7|271|228
chr2_4 exon 4387396 4387780 4387396 ID=Msa0309750-mRNA-1:exon:1551;Parent=Msa0309750-mRNA-1
chr2_4 exon 4388505 4388581 4388505 ID=Msa0309750-mRNA-1:exon:1550;Parent=Msa0309750-mRNA-1
chr2_4 exon 4388670 4388760 4388670 ID=Msa0309750-mRNA-1:exon:1549;Parent=Msa0309750-mRNA-1
chr2_4 exon 4389083 4389143 4389083 ID=Msa0309750-mRNA-1:exon:1548;Parent=Msa0309750-mRNA-1
chr2_4 exon 4389454 4389512 4389454 ID=Msa0309750-mRNA-1:exon:1547;Parent=Msa0309750-mRNA-1
chr2_4 exon 4390091 4390347 4390091 ID=Msa0309750-mRNA-1:exon:1546;Parent=Msa0309750-mRNA-1
chr2_4 exon 4390443 4390547 4390443 ID=Msa0309750-mRNA-1:exon:1545;Parent=Msa0309750-mRNA-1
chr2_4 five_prime_UTR 4390471 4390547 4390471 ID=Msa0309750-mRNA-1:five_prime_utr;Parent=Msa0309750-mRNA-1
chr2_4 CDS 4390443 4390470 4390443 ID=Msa0309750-mRNA-1:cds;Parent=Msa0309750-mRNA-1
chr2_4 CDS 4390091 4390347 4390091 ID=Msa0309750-mRNA-1:cds;Parent=Msa0309750-mRNA-1
chr2_4 CDS 4389454 4389512 4389454 ID=Msa0309750-mRNA-1:cds;Parent=Msa0309750-mRNA-1
chr2_4 CDS 4389083 4389143 4389083 ID=Msa0309750-mRNA-1:cds;Parent=Msa0309750-mRNA-1
chr2_4 CDS 4388670 4388760 4388670 ID=Msa0309750-mRNA-1:cds;Parent=Msa0309750-mRNA-1
chr2_4 CDS 4388505 4388581 4388505 ID=Msa0309750-mRNA-1:cds;Parent=Msa0309750-mRNA-1
chr2_4 CDS 4387667 4387780 4387667 ID=Msa0309750-mRNA-1:cds;Parent=Msa0309750-mRNA-1
chr2_4 three_prime_UTR 4387396 4387666 4387396 ID=Msa0309750-mRNA-1:three_prime_utr;Parent=Msa0309750-mRNA-1
Gene Sequence

>Msa0309750

ATGCCAAAATCTAAGAGAAACAAACAAGTTACACTTTCAAAGACAACGAAAAAAGGAAGAGGTCACAAAGAATTGATAATTAATGGAATAAGAGATGCAGCTGAAAAATACAGTTCAATTTACGTTTTCAATTTTCAGAATATGAGAAATTCTAAATTGAAAGAGTTTAGGGAACAATTACAATCAAGTAGCAAGTTTTTTCTTGGATCTAACAAAGTAATGCAAGTTGCTATTGGTCGTTCTGCTTCTGATGAAATCAAACCCAATCTTCACAAAGTTTCAAAGCTATTGCGTGGAGATGCTGGAATGATTTTTACGAATTTGTCTAAAGAAGAAGTTGAAAGGCTGTTTAATGAATTTGAGGGATGCGACTTTGCAAGAACAGGAAGCATTGCCACCGAAAAGGTTGAACTCAAGGAGGGTCCTTTAGAGCAGTTCACACATGATATGGAACCTTTTCTCCGGAAGCAAGGCATGCCTGTTCGGTTAAATAAAGGTGTTGTGGAGCTTGTTTCTGACTTTGTTGTTTGTGAGGAGGGAAAGCCTTTGTCACCTGAAGCATCTCGTATACTGCGTTTGATGGGAAATATGATGGCTACGTTTCGACTGAACCTGGTTTGTAGATGGGGTTCTGAGGATGATTTTGAACTCTACATTGATGGGCCTGGCGATTCAGATGTTGAATGA

Protein sequence

>Msa0309750

MPKSKRNKQVTLSKTTKKGRGHKELIINGIRDAAEKYSSIYVFNFQNMRNSKLKEFREQLQSSSKFFLGSNKVMQVAIGRSASDEIKPNLHKVSKLLRGDAGMIFTNLSKEEVERLFNEFEGCDFARTGSIATEKVELKEGPLEQFTHDMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPEASRILRLMGNMMATFRLNLVCRWGSEDDFELYIDGPGDSDVE*