AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0054440


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0054440 MtrunA17_Chr1g0156231 86.388 551 15 3 1 540 1 502 0.0 952
Msa0054440 MtrunA17_Chr1g0159451 44.937 158 77 2 142 290 251 407 3.77e-29 121
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0054440 AT5G67240.2 48.478 427 195 7 1 405 1 424 1.78e-133 397
Msa0054440 AT5G67240.3 48.478 427 195 7 1 405 1 424 2.61e-132 399
Msa0054440 AT5G67240.3 32.500 160 102 3 306 461 465 622 2.02e-16 82.8
Msa0054440 AT5G67240.4 48.712 427 194 7 1 405 1 424 3.93e-132 399
Msa0054440 AT5G67240.4 45.000 100 54 1 306 405 465 563 5.79e-19 90.9
Msa0054440 AT5G67240.1 48.712 427 194 7 1 405 1 424 8.13e-131 400
Msa0054440 AT5G67240.1 45.000 100 54 1 306 405 465 563 6.76e-19 90.9
Msa0054440 AT5G67240.1 32.500 160 102 3 306 461 604 761 3.58e-16 82.4
Msa0054440 AT3G50100.1 45.606 421 201 8 1 405 1 409 2.06e-115 348
Msa0054440 AT5G05540.1 43.026 423 218 8 1 405 1 418 3.00e-96 300
Msa0054440 AT3G50100.2 45.541 314 150 5 102 401 2 308 4.44e-85 266
Msa0054440 AT5G05540.2 44.160 351 174 7 1 334 1 346 5.83e-82 259
Msa0054440 AT3G50090.1 40.979 327 155 7 82 390 12 318 1.53e-66 219
Msa0054440 AT5G25800.1 40.854 164 87 2 142 296 215 377 2.02e-24 107
Msa0054440 AT5G25800.2 40.854 164 87 2 142 296 217 379 2.45e-24 107

Find 140 sgRNAs with CRISPR-Local

Find 470 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTATCTCCTTGACCGTTTC+TGG 0.065636 1_2:-9187157 None:intergenic
GAACTTTGAACTTAAAATTT+TGG 0.163264 1_2:+9188285 Msa0054440:three_prime_UTR
TAACATACAAATACATTATC+TGG 0.167873 1_2:-9188348 None:intergenic
GTTGAGGATTTCTCCAAATT+AGG 0.182713 1_2:-9181415 None:intergenic
AAACCTCTAAAACCCTAATT+TGG 0.189575 1_2:+9181402 Msa0054440:five_prime_UTR
CAGTTTATTTGTTCGGAAAA+TGG 0.222363 1_2:+9187692 Msa0054440:CDS
TAATGTATTTGTATGTTATT+AGG 0.230798 1_2:+9188353 Msa0054440:three_prime_UTR
GGCTCTTGAACCAATGTTAA+TGG 0.248346 1_2:-9186725 None:intergenic
GAAAGGCATGAAGGGTAAAA+TGG 0.250069 1_2:+9183255 Msa0054440:CDS
CAAAGTTCGAATTGATAAAA+AGG 0.262892 1_2:-9188270 None:intergenic
GGGCTATGAAGTTCGGAAAA+AGG 0.268806 1_2:+9186616 Msa0054440:intron
GTTGGTTGATATTGTAAAAT+TGG 0.270086 1_2:+9183225 Msa0054440:CDS
AAAGAGGTCCCATGAGGTTT+TGG 0.280323 1_2:+9183342 Msa0054440:CDS
AGTGATAAACCTTAAGAAAA+AGG 0.280502 1_2:+9185527 Msa0054440:CDS
AATTACTGCTCTGCATAAAA+TGG 0.290293 1_2:+9188073 Msa0054440:CDS
TAAACTGTGTCCAACTAATA+TGG 0.306541 1_2:-9186038 None:intergenic
ATTCTTACGTCAATTCGATA+TGG 0.317448 1_2:+9182068 Msa0054440:exon
TGAACCAATGTTAATGGAAA+TGG 0.321470 1_2:-9186719 None:intergenic
TGCAGTATTATATTATTGTT+TGG 0.336413 1_2:+9188385 Msa0054440:three_prime_UTR
TTGAGGATTTCTCCAAATTA+GGG 0.346280 1_2:-9181414 None:intergenic
ATTGTATATGTACCTTTGTT+TGG 0.351180 1_2:-9187248 None:intergenic
TTGACTAAATAAAATCCATT+TGG 0.358455 1_2:+9188425 Msa0054440:three_prime_UTR
CTTCACTTTCTTTCAATCGT+TGG 0.364206 1_2:-9188004 None:intergenic
TGTGGTAGATCTTATCCCTT+TGG 0.364944 1_2:-9185550 None:intergenic
GAGAGAACAGTTGAGGAAAA+AGG 0.366768 1_2:+9187896 Msa0054440:CDS
GTACCTTTGTTTGGCTGCCT+TGG 0.368463 1_2:-9187239 None:intergenic
GTAGGCATGGCACTGGAATA+TGG 0.376241 1_2:+9188133 Msa0054440:exon
AGTTTATTTGTTCGGAAAAT+GGG 0.384251 1_2:+9187693 Msa0054440:CDS
GCACTACACGAAATTGTTCC+TGG 0.385982 1_2:+9186915 Msa0054440:CDS
TTATTTGATCATTGAATTCA+AGG 0.391255 1_2:+9188163 Msa0054440:three_prime_UTR
TAACAAACCTTATCAATAGA+TGG 0.392009 1_2:-9184389 None:intergenic
TTCGTTGCCATCTATTGATA+AGG 0.396493 1_2:+9184382 Msa0054440:CDS
ATTACACAAACTTGTTAAAC+CGG 0.400307 1_2:+9185815 Msa0054440:CDS
TACTTTGTGTAGGACTCAAA+TGG 0.401193 1_2:+9187621 Msa0054440:intron
ACCTCATGGGACCTCTTTGA+TGG 0.405801 1_2:-9183337 None:intergenic
TCCAATGGAACCATATTAGT+TGG 0.408073 1_2:+9186028 Msa0054440:CDS
TCTGGTAAATCTCTCTTAGA+TGG 0.409357 1_2:-9187741 None:intergenic
TTATGAAAACATACCTGCTC+AGG 0.413500 1_2:-9183602 None:intergenic
TGTTGTAGATCACAATTTAG+AGG 0.418558 1_2:+9185638 Msa0054440:CDS
TTGACGGCGGCGCCGGTGAA+TGG 0.429902 1_2:-9181453 None:intergenic
GACTACAAAACAGAGATTAC+TGG 0.429986 1_2:+9185852 Msa0054440:CDS
ATTCATCATTCCACTTGCTC+AGG 0.433202 1_2:-9188309 None:intergenic
GGCAATGTCTTAAAACCGTT+TGG 0.441644 1_2:+9188208 Msa0054440:three_prime_UTR
TGAGTGTCAGTTTATTTGTT+CGG 0.442329 1_2:+9187685 Msa0054440:CDS
TAGGGTGCTGGAGAGTTACT+TGG 0.466593 1_2:-9184343 None:intergenic
TTGCTTCAGCCTTCCAGAAA+CGG 0.466691 1_2:+9187144 Msa0054440:intron
TGCATACATCTTCCAACCCT+TGG 0.468589 1_2:+9186240 Msa0054440:CDS
AAAGGCATGAAGGGTAAAAT+GGG 0.471068 1_2:+9183256 Msa0054440:CDS
TCCAACTAATATGGTTCCAT+TGG 0.471919 1_2:-9186029 None:intergenic
AATGGATCCTGAAGTTGAAA+AGG 0.473741 1_2:+9187803 Msa0054440:CDS
GGTTGCTGTTGATTGTGAAA+TGG 0.476220 1_2:+9185575 Msa0054440:CDS
TGAAGATGGGACTGAAGCTT+TGG 0.477204 1_2:+9185605 Msa0054440:CDS
AGTTATAAGTTTCATCCAAA+CGG 0.479288 1_2:-9188223 None:intergenic
TAGTCTTTGATTGCTTTCTC+CGG 0.480451 1_2:-9185834 None:intergenic
CTCAACGGATGAGGATTTGA+AGG 0.485414 1_2:+9183384 Msa0054440:CDS
GAATAATCCATTGGATACAT+AGG 0.485454 1_2:-9184362 None:intergenic
ATTCAAGTGTATAATCTTGA+CGG 0.486818 1_2:-9181469 None:intergenic
AGTGGATCATGAAATTGAAA+AGG 0.487238 1_2:+9187950 Msa0054440:CDS
TTGCTCCTTAGCTGATATAC+AGG 0.488234 1_2:+9185905 Msa0054440:CDS
GCTTCAGTGTTCACAGTGGT+TGG 0.489845 1_2:-9186894 None:intergenic
GTAAAATTGGTACAAAAGAA+AGG 0.490743 1_2:+9183238 Msa0054440:CDS
AATTCTCAAACAAATCCAAA+TGG 0.493173 1_2:-9188440 None:intergenic
CGATCTATTGTGAAGTCCCC+AGG 0.493552 1_2:-9186933 None:intergenic
TGTCACGTGTCGGCTGAGTA+CGG 0.498224 1_2:+9187659 Msa0054440:CDS
ACATCAACCATCTCGCCCTC+TGG 0.503742 1_2:-9187759 None:intergenic
GATTGACACCGCGGAAAAGA+AGG 0.505994 1_2:+9182098 Msa0054440:CDS
CACTACACGAAATTGTTCCT+GGG 0.507092 1_2:+9186916 Msa0054440:CDS
ATCTCACGATTCCCCTGAGC+AGG 0.509513 1_2:+9183589 Msa0054440:CDS
GGGTAAAATGGGAGACTGGA+AGG 0.511985 1_2:+9183267 Msa0054440:CDS
AGATTTACCAGAGGGCGAGA+TGG 0.514247 1_2:+9187752 Msa0054440:CDS
TGTTTCAATCTCTTTCAAGT+AGG 0.515025 1_2:-9187829 None:intergenic
ACTTTGTGTAGGACTCAAAT+GGG 0.515289 1_2:+9187622 Msa0054440:intron
AAAGACATTCTCAACGGATG+AGG 0.517939 1_2:+9183375 Msa0054440:CDS
GTCACGTGTCGGCTGAGTAC+GGG 0.526262 1_2:+9187660 Msa0054440:CDS
AACTGAATTGAAAACTGAAA+GGG 0.528200 1_2:+9181320 Msa0054440:five_prime_UTR
TATAATCTTGACGGCGGCGC+CGG 0.528437 1_2:-9181460 None:intergenic
AACATACAAATACATTATCT+GGG 0.531489 1_2:-9188347 None:intergenic
ATGAAGAAGTTGTTATCCAA+TGG 0.538388 1_2:+9186013 Msa0054440:CDS
CCTTGGATGGCTCTATTCAC+AGG 0.539512 1_2:+9186257 Msa0054440:CDS
TGATTCCAAGGAAGGAAAAG+TGG 0.539897 1_2:+9187932 Msa0054440:CDS
GAAATGGTTCTCTGTGAAGA+TGG 0.540693 1_2:+9185591 Msa0054440:CDS
CCATTGGATACATAGGGTGC+TGG 0.541606 1_2:-9184355 None:intergenic
AAAAGTAGTAGGCATGGCAC+TGG 0.544537 1_2:+9188126 Msa0054440:exon
TTCATCATTCCACTTGCTCA+GGG 0.546335 1_2:-9188308 None:intergenic
GAAATGCAGCCAAAACCTCA+TGG 0.548328 1_2:-9183351 None:intergenic
GGTACAAAAGAAAGGCATGA+AGG 0.548788 1_2:+9183246 Msa0054440:CDS
GTGCTTCAATCTCTTTCAAG+TGG 0.549104 1_2:-9187977 None:intergenic
TAAGCCATTTCCATTAACAT+TGG 0.550774 1_2:+9186715 Msa0054440:CDS
AATAATCCATTGGATACATA+GGG 0.550785 1_2:-9184361 None:intergenic
TCTCCTTGACCGTTTCTGGA+AGG 0.551707 1_2:-9187153 None:intergenic
ACGATTGAAAGAGAGTGAGT+TGG 0.554197 1_2:+9187860 Msa0054440:CDS
AAACTGAATTGAAAACTGAA+AGG 0.556890 1_2:+9181319 Msa0054440:five_prime_UTR
CAAGTGGATGATTCCAAGGA+AGG 0.556893 1_2:+9187924 Msa0054440:CDS
CCAGCACCCTATGTATCCAA+TGG 0.559697 1_2:+9184355 Msa0054440:CDS
TGAAGGGTAAAATGGGAGAC+TGG 0.560598 1_2:+9183263 Msa0054440:CDS
TACATCTTCCAACCCTTGGA+TGG 0.561701 1_2:+9186244 Msa0054440:CDS
TGCTTCAATCTCTTTCAAGT+GGG 0.564069 1_2:-9187976 None:intergenic
GATGGCAACGAATAATCCAT+TGG 0.567685 1_2:-9184371 None:intergenic
CTTACAAGTGGATGATTCCA+AGG 0.573419 1_2:+9187920 Msa0054440:CDS
GAATAGAGCCATCCAAGGGT+TGG 0.573837 1_2:-9186252 None:intergenic
AATCATTGAGAGAACAGTTG+AGG 0.578459 1_2:+9187889 Msa0054440:CDS
TCAAGGTTTCAAAGTACAAG+AGG 0.580792 1_2:+9181270 None:intergenic
ATGCATCATGTGCCTCTCGT+TGG 0.582171 1_2:-9187206 None:intergenic
GTACAAAAGAAAGGCATGAA+GGG 0.582899 1_2:+9183247 Msa0054440:CDS
AATTACCTGTATATCAGCTA+AGG 0.584653 1_2:-9185910 None:intergenic
TATGAAAACATACCTGCTCA+GGG 0.585900 1_2:-9183601 None:intergenic
AAATGGTTCTCTGTGAAGAT+GGG 0.588526 1_2:+9185592 Msa0054440:CDS
AAATGCAGCCAAAACCTCAT+GGG 0.595175 1_2:-9183350 None:intergenic
TTAGGTTTCAGAAAGTGAGA+TGG 0.598092 1_2:+9186848 Msa0054440:intron
TCTAAGAGAGATTTACCAGA+GGG 0.607288 1_2:+9187744 Msa0054440:CDS
CAGCCTTCCAGAAACGGTCA+AGG 0.607612 1_2:+9187150 Msa0054440:intron
ATTCCTTCGAAACCATTCAC+CGG 0.609044 1_2:+9181441 Msa0054440:five_prime_UTR
GCGCCGGTGAATGGTTTCGA+AGG 0.610499 1_2:-9181444 None:intergenic
TGTCCAAGGCAGCCAAACAA+AGG 0.611407 1_2:+9187236 Msa0054440:CDS
GATGCATATGAAAATGTCCA+AGG 0.619700 1_2:+9187222 Msa0054440:CDS
GGACTTCACAATAGATCGAA+AGG 0.623377 1_2:+9186938 Msa0054440:CDS
CCTGTGAATAGAGCCATCCA+AGG 0.624216 1_2:-9186257 None:intergenic
ACGATTGAAAGAAAGTGAAG+CGG 0.626577 1_2:+9188007 Msa0054440:CDS
GTTTCGAAGGAATGTCGTTG+AGG 0.629479 1_2:-9181431 None:intergenic
GTTCTTGCAAAGATCAAACA+TGG 0.630093 1_2:+9186686 Msa0054440:CDS
ATTTCTAAAGACATTCTCAA+CGG 0.633013 1_2:+9183369 Msa0054440:CDS
TGCAGAAACTTGTCACGTGT+CGG 0.633987 1_2:+9187649 Msa0054440:CDS
CTGCTATTCTTATAAAACTG+TGG 0.635169 1_2:+9188187 Msa0054440:three_prime_UTR
AGCGGAGATTGAATCATCGA+GGG 0.645556 1_2:+9188025 Msa0054440:CDS
GAAGCTTGATTATGTTAGAG+TGG 0.657464 1_2:+9186210 Msa0054440:CDS
TCCTTATAAAATGAAAGACG+TGG 0.666691 1_2:-9181297 None:intergenic
CTGTGAATAGAGCCATCCAA+GGG 0.666796 1_2:-9186256 None:intergenic
ACAATCAACAGCAACCATTG+TGG 0.670727 1_2:-9185568 None:intergenic
ACTACACGAAATTGTTCCTG+GGG 0.691492 1_2:+9186917 Msa0054440:CDS
AAGCGGAGATTGAATCATCG+AGG 0.696061 1_2:+9188024 Msa0054440:CDS
TGACACAAACTATTCAACGA+AGG 0.706014 1_2:-9186283 None:intergenic
AGGGATAAGATCTACCACAA+TGG 0.714725 1_2:+9185554 Msa0054440:CDS
ATCTAAGAGAGATTTACCAG+AGG 0.714858 1_2:+9187743 Msa0054440:CDS
TCCATCAAAGAGGTCCCATG+AGG 0.716207 1_2:+9183336 Msa0054440:CDS
ATGAAAACATACCTGCTCAG+GGG 0.723649 1_2:-9183600 None:intergenic
GGATGAGAAGATTGACACCG+CGG 0.723985 1_2:+9182089 Msa0054440:CDS
GTATGAGCGATCCATCAAAG+AGG 0.733411 1_2:+9183326 Msa0054440:CDS
CAAGTGTATAATCTTGACGG+CGG 0.759053 1_2:-9181466 None:intergenic
TAGTGCTTCAGTGTTCACAG+TGG 0.786374 1_2:-9186898 None:intergenic
AGTTTATATAATGATCTACG+TGG 0.789260 1_2:+9186055 Msa0054440:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTATTAAATTTTATAA+TGG + chr1_2:9183907-9183926 Msa0054440:intron 0.0%
!! ATTTGTAAAAATTATAACAA+TGG - chr1_2:9183995-9184014 None:intergenic 10.0%
!! AAAAAAAAAATCTATAGATA+TGG - chr1_2:9185009-9185028 None:intergenic 10.0%
!! AATAATAAATTGTATATCTT+TGG - chr1_2:9185183-9185202 None:intergenic 10.0%
!! TTATATAGAAATAGAAAATA+TGG - chr1_2:9187383-9187402 None:intergenic 10.0%
!! ATTTCTATATAAATGTTTAT+AGG + chr1_2:9187391-9187410 Msa0054440:intron 10.0%
!! TTTCTATATAAATGTTTATA+GGG + chr1_2:9187392-9187411 Msa0054440:intron 10.0%
!!! TTCAATTTTTACGAAAAATT+AGG + chr1_2:9181647-9181666 Msa0054440:intron 15.0%
!!! ATAATTACGTTAAATTGTTT+TGG + chr1_2:9181781-9181800 Msa0054440:intron 15.0%
!! TTCTATCAATTTATAACTAA+GGG - chr1_2:9181952-9181971 None:intergenic 15.0%
!!! TGTTTATTTTATTCTCATAT+TGG - chr1_2:9182235-9182254 None:intergenic 15.0%
!! AACAGTAATGATAAAAAATA+TGG + chr1_2:9183298-9183317 Msa0054440:CDS 15.0%
!! ACAGTAATGATAAAAAATAT+GGG + chr1_2:9183299-9183318 Msa0054440:CDS 15.0%
!! TAGAAATACTTATCAATTAT+TGG - chr1_2:9183746-9183765 None:intergenic 15.0%
!!! ATTTTAAAGATAATGCATAA+AGG - chr1_2:9183964-9183983 None:intergenic 15.0%
!! TAAAAAAGCTAAAAAAAACA+TGG + chr1_2:9184665-9184684 Msa0054440:intron 15.0%
!!! ATTTTCTTTAATAAAGCTTA+TGG + chr1_2:9184692-9184711 Msa0054440:intron 15.0%
!! AATTCCTGAAAAAAAAATAA+GGG - chr1_2:9184959-9184978 None:intergenic 15.0%
!! AAATTCCTGAAAAAAAAATA+AGG - chr1_2:9184960-9184979 None:intergenic 15.0%
!! TGCAATTAACAATAAATATT+AGG + chr1_2:9185126-9185145 Msa0054440:intron 15.0%
!! AACAATAAATATTAGGAAAA+TGG + chr1_2:9185133-9185152 Msa0054440:intron 15.0%
!! ACAATAAATATTAGGAAAAT+GGG + chr1_2:9185134-9185153 Msa0054440:intron 15.0%
!! TTAGTTAATTTATTTAGTGA+TGG + chr1_2:9185395-9185414 Msa0054440:intron 15.0%
!! TAATGTATTTGTATGTTATT+AGG + chr1_2:9188353-9188372 Msa0054440:three_prime_UTR 15.0%
!! ATAAAAACAGAGAAACAAAT+AGG + chr1_2:9181358-9181377 Msa0054440:five_prime_UTR 20.0%
!!! ATTATACACTTGAATTTTTG+AGG + chr1_2:9181477-9181496 Msa0054440:five_prime_UTR 20.0%
!!! TGAATTTGATTATGATTTTC+TGG + chr1_2:9181605-9181624 Msa0054440:intron 20.0%
!!! TTATGATTTTCTGGAAATAT+AGG + chr1_2:9181614-9181633 Msa0054440:intron 20.0%
!! CTTCTATCAATTTATAACTA+AGG - chr1_2:9181953-9181972 None:intergenic 20.0%
!! ATCTAATCAAGCAATAAAAT+GGG - chr1_2:9182195-9182214 None:intergenic 20.0%
!! AATCTAATCAAGCAATAAAA+TGG - chr1_2:9182196-9182215 None:intergenic 20.0%
!! TGAGAATAAAATAAACATAG+CGG + chr1_2:9182238-9182257 Msa0054440:intron 20.0%
!!! ATTTCAAGATTTTCTACTAT+GGG - chr1_2:9182334-9182353 None:intergenic 20.0%
!! CATTTCAAAAACAAAACAAA+AGG - chr1_2:9182441-9182460 None:intergenic 20.0%
!!! TGCATTCATTTGAATATTTT+AGG + chr1_2:9182610-9182629 Msa0054440:intron 20.0%
!!! ATTTTGGATAATCATATATC+AGG + chr1_2:9182996-9183015 Msa0054440:intron 20.0%
!!! TTTTGGATAATCATATATCA+GGG + chr1_2:9182997-9183016 Msa0054440:intron 20.0%
!! GGTATAATAAATGTCAATAA+AGG + chr1_2:9183030-9183049 Msa0054440:intron 20.0%
!!! ACATTAAAGTATTAGTTTCT+GGG - chr1_2:9183197-9183216 None:intergenic 20.0%
!!! ATTTTTTATCATTACTGTTC+AGG - chr1_2:9183297-9183316 None:intergenic 20.0%
!!! ATTAACTTTATCTTTAGGAA+AGG - chr1_2:9183465-9183484 None:intergenic 20.0%
!! TTTCATAATGATTGTTATGT+TGG + chr1_2:9183617-9183636 Msa0054440:intron 20.0%
!! AAATTATAACAATGGAACTA+GGG - chr1_2:9183987-9184006 None:intergenic 20.0%
!! AAAATTATAACAATGGAACT+AGG - chr1_2:9183988-9184007 None:intergenic 20.0%
!! AAATAGTCATAAATATGTCA+AGG + chr1_2:9184522-9184541 Msa0054440:intron 20.0%
!!! AAAAGACCATGTTTTTTTTA+AGG - chr1_2:9184616-9184635 None:intergenic 20.0%
!!! TTTTTTTTTGAAGGATAACA+TGG + chr1_2:9184633-9184652 Msa0054440:intron 20.0%
!!! ATTGAAATTACTTTTTCGTA+CGG + chr1_2:9184775-9184794 Msa0054440:intron 20.0%
!! CATATCTATCAATATTTAAG+AGG - chr1_2:9185223-9185242 None:intergenic 20.0%
!! CTCTTAAATATTGATAGATA+TGG + chr1_2:9185221-9185240 Msa0054440:intron 20.0%
!! AAATATTGATAGATATGGAA+TGG + chr1_2:9185226-9185245 Msa0054440:intron 20.0%
!! AAAGCAAATCATATAGTAAA+AGG - chr1_2:9185377-9185396 None:intergenic 20.0%
!! TGTAAATTATTAGTCATACA+AGG + chr1_2:9185447-9185466 Msa0054440:intron 20.0%
!! TCATGTTATTCCAATAATTA+CGG - chr1_2:9187019-9187038 None:intergenic 20.0%
!! TCAATTTATGATAAGAAACT+TGG - chr1_2:9187516-9187535 None:intergenic 20.0%
!! TTATTTGATCATTGAATTCA+AGG + chr1_2:9188163-9188182 Msa0054440:three_prime_UTR 20.0%
!!! GAACTTTGAACTTAAAATTT+TGG + chr1_2:9188285-9188304 Msa0054440:three_prime_UTR 20.0%
!! AACATACAAATACATTATCT+GGG - chr1_2:9188350-9188369 None:intergenic 20.0%
!! TAACATACAAATACATTATC+TGG - chr1_2:9188351-9188370 None:intergenic 20.0%
!! TGCAGTATTATATTATTGTT+TGG + chr1_2:9188385-9188404 Msa0054440:three_prime_UTR 20.0%
!! TTGACTAAATAAAATCCATT+TGG + chr1_2:9188425-9188444 Msa0054440:three_prime_UTR 20.0%
!!! GTTTGAGAATTTTTAGTTTA+TGG + chr1_2:9188452-9188471 Msa0054440:three_prime_UTR 20.0%
!!! GAATTTTTAGTTTATGGTTA+TGG + chr1_2:9188458-9188477 Msa0054440:three_prime_UTR 20.0%
! AAACTGAATTGAAAACTGAA+AGG + chr1_2:9181319-9181338 Msa0054440:five_prime_UTR 25.0%
! AACTGAATTGAAAACTGAAA+GGG + chr1_2:9181320-9181339 Msa0054440:five_prime_UTR 25.0%
!!! TTGTTTCTCTGTTTTTATAC+TGG - chr1_2:9181356-9181375 None:intergenic 25.0%
!! TTTAGAGGTTTTCAAAAACA+AGG - chr1_2:9181393-9181412 None:intergenic 25.0%
! ATTCAAGTGTATAATCTTGA+CGG - chr1_2:9181472-9181491 None:intergenic 25.0%
! TACGAAAAATTAGGTTAACT+TGG + chr1_2:9181656-9181675 Msa0054440:intron 25.0%
! ACGAAAAATTAGGTTAACTT+GGG + chr1_2:9181657-9181676 Msa0054440:intron 25.0%
!! ATAAGCGATTTTTATAGCAA+AGG + chr1_2:9181756-9181775 Msa0054440:intron 25.0%
! TAGCTTATGAAAACAACTTA+TGG - chr1_2:9181819-9181838 None:intergenic 25.0%
! ATTGCTTTACTTGTATAATC+AGG + chr1_2:9182030-9182049 Msa0054440:intron 25.0%
!!! TTGTATAATCAGGTTTTGTT+GGG + chr1_2:9182040-9182059 Msa0054440:intron 25.0%
! ATTTGCTTCTTTGTTCTATT+CGG + chr1_2:9182157-9182176 Msa0054440:intron 25.0%
! TTATTGCTTGATTAGATTGT+TGG + chr1_2:9182198-9182217 Msa0054440:intron 25.0%
! TATTGCTTGATTAGATTGTT+GGG + chr1_2:9182199-9182218 Msa0054440:intron 25.0%
! GAGAATAAAATAAACATAGC+GGG + chr1_2:9182239-9182258 Msa0054440:intron 25.0%
! AGAATAAAATAAACATAGCG+GGG + chr1_2:9182240-9182259 Msa0054440:intron 25.0%
!! CATTTCAAGATTTTCTACTA+TGG - chr1_2:9182335-9182354 None:intergenic 25.0%
!! TTTGAACTTTTGACATTGTA+AGG + chr1_2:9182478-9182497 Msa0054440:intron 25.0%
!! TTGAACTTTTGACATTGTAA+GGG + chr1_2:9182479-9182498 Msa0054440:intron 25.0%
! TGATAGATAAACAACTGAAA+CGG + chr1_2:9182512-9182531 Msa0054440:intron 25.0%
!! ATTTAAAACCTTGAAAACAG+TGG + chr1_2:9182904-9182923 Msa0054440:intron 25.0%
!! TCAAGATTCAAAGTGTATTT+TGG + chr1_2:9182980-9182999 Msa0054440:intron 25.0%
! ATATATCAGGGAAAAAACTA+GGG + chr1_2:9183009-9183028 Msa0054440:intron 25.0%
!! CATTAAAGTATTAGTTTCTG+GGG - chr1_2:9183196-9183215 None:intergenic 25.0%
!! CACATTAAAGTATTAGTTTC+TGG - chr1_2:9183198-9183217 None:intergenic 25.0%
! ACTAATACTTTAATGTGCAT+AGG + chr1_2:9183201-9183220 Msa0054440:intron 25.0%
!! GTTGGTTGATATTGTAAAAT+TGG + chr1_2:9183225-9183244 Msa0054440:CDS 25.0%
! GTAAAATTGGTACAAAAGAA+AGG + chr1_2:9183238-9183257 Msa0054440:CDS 25.0%
! AATGATAAAAAATATGGGTC+AGG + chr1_2:9183304-9183323 Msa0054440:CDS 25.0%
!! ATTTCTAAAGACATTCTCAA+CGG + chr1_2:9183369-9183388 Msa0054440:CDS 25.0%
!! TTTAACTTTATATCTAGGGA+AGG - chr1_2:9183424-9183443 None:intergenic 25.0%
!!! GGCTTTTAACTTTATATCTA+GGG - chr1_2:9183428-9183447 None:intergenic 25.0%
! TTTAGGAAAGGATATAAATC+AGG - chr1_2:9183453-9183472 None:intergenic 25.0%
! CTCGTAAAATATAGAAAAGA+TGG - chr1_2:9183669-9183688 None:intergenic 25.0%
! CTGGTAAAATATAGAAAAGA+TGG - chr1_2:9183715-9183734 None:intergenic 25.0%
! TCAATTATTGGTACTATAAC+TGG - chr1_2:9183734-9183753 None:intergenic 25.0%
!!! GTTTTCTGTGTATTTTTTTG+AGG + chr1_2:9183802-9183821 Msa0054440:intron 25.0%
! TAAAAAATGTTGAACCCTTA+AGG - chr1_2:9183894-9183913 None:intergenic 25.0%
! AACTAATAATGAAAAAGTGG+CGG - chr1_2:9183933-9183952 None:intergenic 25.0%
! TGGAACTAATAATGAAAAAG+TGG - chr1_2:9183936-9183955 None:intergenic 25.0%
! TAGGTTCAACATTCAAATTT+GGG - chr1_2:9184076-9184095 None:intergenic 25.0%
! TTAGGTTCAACATTCAAATT+TGG - chr1_2:9184077-9184096 None:intergenic 25.0%
! CAGAAAGTAATATTAGAAGA+TGG - chr1_2:9184158-9184177 None:intergenic 25.0%
!! TAGGAAGCGTAAAAAATAAT+TGG - chr1_2:9184184-9184203 None:intergenic 25.0%
! AATAATCCATTGGATACATA+GGG - chr1_2:9184364-9184383 None:intergenic 25.0%
! TAACAAACCTTATCAATAGA+TGG - chr1_2:9184392-9184411 None:intergenic 25.0%
!!! GTTATATTCTATTTTTCTCG+AGG - chr1_2:9184558-9184577 None:intergenic 25.0%
! GAAAATAACACAGAAAAAAG+TGG + chr1_2:9184589-9184608 Msa0054440:intron 25.0%
!!! ACATGGTCTTTTTTTTTTGA+AGG + chr1_2:9184624-9184643 Msa0054440:intron 25.0%
!!! CAAACCCTTATTTTTTTTTC+AGG + chr1_2:9184952-9184971 Msa0054440:intron 25.0%
! AATTGCATTATAGATTGCTA+AGG - chr1_2:9185113-9185132 None:intergenic 25.0%
!! ATCATATAGTAAAAGGTGTA+AGG - chr1_2:9185370-9185389 None:intergenic 25.0%
! AGTGATAAACCTTAAGAAAA+AGG + chr1_2:9185527-9185546 Msa0054440:CDS 25.0%
! GAGGTAATGTAATTTAATGA+TGG + chr1_2:9185657-9185676 Msa0054440:intron 25.0%
!! CAAACGAAACAATTTCTTTT+CGG + chr1_2:9185756-9185775 Msa0054440:intron 25.0%
!! AAACGAAACAATTTCTTTTC+GGG + chr1_2:9185757-9185776 Msa0054440:intron 25.0%
!!! ATTACACAAACTTGTTAAAC+CGG + chr1_2:9185815-9185834 Msa0054440:CDS 25.0%
! AGTTTATATAATGATCTACG+TGG + chr1_2:9186055-9186074 Msa0054440:CDS 25.0%
! TTAGTAAACAAAATGAAACC+AGG - chr1_2:9186170-9186189 None:intergenic 25.0%
! TATACAATACAATGACTTAC+AGG - chr1_2:9186749-9186768 None:intergenic 25.0%
!!! TTGTATACTTTTTTCAGTAC+CGG + chr1_2:9186762-9186781 Msa0054440:intron 25.0%
! TTGTAGTTATACAGTTAAAC+TGG + chr1_2:9186786-9186805 Msa0054440:intron 25.0%
!!! GGACTTTAAAATTTATCCTT+CGG + chr1_2:9187054-9187073 Msa0054440:intron 25.0%
!! TTGGTTCTTAAAAATAGCTA+AGG - chr1_2:9187190-9187209 None:intergenic 25.0%
! ATTGTATATGTACCTTTGTT+TGG - chr1_2:9187251-9187270 None:intergenic 25.0%
! GAAATAGAAAATATGGATTC+AGG - chr1_2:9187376-9187395 None:intergenic 25.0%
!!! GTTATTTTTCCATCAGATTT+TGG - chr1_2:9187448-9187467 None:intergenic 25.0%
! AGTTTATTTGTTCGGAAAAT+GGG + chr1_2:9187693-9187712 Msa0054440:CDS 25.0%
!! ATTTTTACTTTCTTGTTCTC+GGG - chr1_2:9187786-9187805 None:intergenic 25.0%
!! CATTTTTACTTTCTTGTTCT+CGG - chr1_2:9187787-9187806 None:intergenic 25.0%
! AGTTATAAGTTTCATCCAAA+CGG - chr1_2:9188226-9188245 None:intergenic 25.0%
! CAAAGTTCGAATTGATAAAA+AGG - chr1_2:9188273-9188292 None:intergenic 25.0%
! AATTCTCAAACAAATCCAAA+TGG - chr1_2:9188443-9188462 None:intergenic 25.0%
TCCTTATAAAATGAAAGACG+TGG - chr1_2:9181300-9181319 None:intergenic 30.0%
!! AAACCTCTAAAACCCTAATT+TGG + chr1_2:9181402-9181421 Msa0054440:five_prime_UTR 30.0%
TTGAGGATTTCTCCAAATTA+GGG - chr1_2:9181417-9181436 None:intergenic 30.0%
!! ATAAGCAGAAAGTTTGTTAC+CGG - chr1_2:9181540-9181559 None:intergenic 30.0%
!! TGATTTTCTGGAAATATAGG+TGG + chr1_2:9181617-9181636 Msa0054440:intron 30.0%
! CGAAAAATTAGGTTAACTTG+GGG + chr1_2:9181658-9181677 Msa0054440:intron 30.0%
AAATAAGCTGTTATCCAAAC+AGG - chr1_2:9181684-9181703 None:intergenic 30.0%
!! TAAGTTTTGTGAGACTGTTT+GGG - chr1_2:9181915-9181934 None:intergenic 30.0%
!! ATAAGTTTTGTGAGACTGTT+TGG - chr1_2:9181916-9181935 None:intergenic 30.0%
CTTCTAACTCATCACTAAAT+TGG - chr1_2:9181985-9182004 None:intergenic 30.0%
ATTTAGTGATGAGTTAGAAG+CGG + chr1_2:9181985-9182004 Msa0054440:intron 30.0%
!! CTTGTATAATCAGGTTTTGT+TGG + chr1_2:9182039-9182058 Msa0054440:intron 30.0%
ATTCTTACGTCAATTCGATA+TGG + chr1_2:9182068-9182087 Msa0054440:exon 30.0%
AAGAAGCAAATGCAAAACAA+AGG - chr1_2:9182148-9182167 None:intergenic 30.0%
! TGAACTTTTGACATTGTAAG+GGG + chr1_2:9182480-9182499 Msa0054440:intron 30.0%
!! TTGGGTTCAAGTTTTGTAAA+TGG + chr1_2:9182730-9182749 Msa0054440:intron 30.0%
AACAAATGTAGCCACAATTA+CGG - chr1_2:9182827-9182846 None:intergenic 30.0%
CATATATCAGGGAAAAAACT+AGG + chr1_2:9183008-9183027 Msa0054440:intron 30.0%
GAAAAACAAAAGGCTAACAA+AGG - chr1_2:9183153-9183172 None:intergenic 30.0%
!!! TTGTTAGCCTTTTGTTTTTC+CGG + chr1_2:9183153-9183172 Msa0054440:intron 30.0%
!!! GGGCTTTTAACTTTATATCT+AGG - chr1_2:9183429-9183448 None:intergenic 30.0%
CTCAATATTTGAGTCAAAAC+TGG - chr1_2:9183776-9183795 None:intergenic 30.0%
! GATAATGCATAAAGGTACAA+TGG - chr1_2:9183956-9183975 None:intergenic 30.0%
! CTTGTAAGTCAGCTTTTATA+TGG - chr1_2:9184031-9184050 None:intergenic 30.0%
TACGGTTAGAAAAACATAGT+AGG - chr1_2:9184299-9184318 None:intergenic 30.0%
! GTTTTTCTAACCGTAACTTT+TGG + chr1_2:9184304-9184323 Msa0054440:intron 30.0%
GAATAATCCATTGGATACAT+AGG - chr1_2:9184365-9184384 None:intergenic 30.0%
! TTACCATTTTGAATGCACAT+AGG - chr1_2:9184447-9184466 None:intergenic 30.0%
TCTATAAATTCAACAAGGAC+TGG - chr1_2:9184470-9184489 None:intergenic 30.0%
GTGTGTCTATAAATTCAACA+AGG - chr1_2:9184475-9184494 None:intergenic 30.0%
AGTGGACCTTAAAAAAAACA+TGG + chr1_2:9184607-9184626 Msa0054440:intron 30.0%
TTCAGTGCTTGAAAATGAAA+TGG + chr1_2:9184743-9184762 Msa0054440:intron 30.0%
TATGTGCACTGCAATAAAAA+AGG - chr1_2:9184895-9184914 None:intergenic 30.0%
TAAATTTCATCCACAGACAA+TGG - chr1_2:9184931-9184950 None:intergenic 30.0%
TCTATAGATATGGAATACAG+TGG - chr1_2:9184999-9185018 None:intergenic 30.0%
GGAAAATGGGAAATTAAATG+AGG + chr1_2:9185147-9185166 Msa0054440:intron 30.0%
ATTGATAGATATGGAATGGT+AGG + chr1_2:9185230-9185249 Msa0054440:intron 30.0%
ATTGTCCTTGATTTCTCAAT+TGG + chr1_2:9185317-9185336 Msa0054440:intron 30.0%
TGCTACAGTTTATAAGCATT+CGG + chr1_2:9185420-9185439 Msa0054440:intron 30.0%
!!! TTTATGTCACTTTTTTGCTG+TGG + chr1_2:9185487-9185506 Msa0054440:intron 30.0%
!!! TTTTTTGCTGTGGAAAATGA+AGG + chr1_2:9185497-9185516 Msa0054440:intron 30.0%
!! TTTTTGCTGTGGAAAATGAA+GGG + chr1_2:9185498-9185517 Msa0054440:intron 30.0%
TGTTGTAGATCACAATTTAG+AGG + chr1_2:9185638-9185657 Msa0054440:CDS 30.0%
! AACGAAACAATTTCTTTTCG+GGG + chr1_2:9185758-9185777 Msa0054440:intron 30.0%
! AGATGATTTCAGAACTTTTC+AGG + chr1_2:9185788-9185807 Msa0054440:intron 30.0%
AATTACCTGTATATCAGCTA+AGG - chr1_2:9185913-9185932 None:intergenic 30.0%
AGCATTTGAAAGGAAGATAA+AGG - chr1_2:9185958-9185977 None:intergenic 30.0%
TCCTTTCAAATGCTTAATGA+AGG + chr1_2:9185964-9185983 Msa0054440:intron 30.0%
TCCTTCATTAAGCATTTGAA+AGG - chr1_2:9185968-9185987 None:intergenic 30.0%
ATGAAGAAGTTGTTATCCAA+TGG + chr1_2:9186013-9186032 Msa0054440:CDS 30.0%
TAAACTGTGTCCAACTAATA+TGG - chr1_2:9186041-9186060 None:intergenic 30.0%
AACCAGGAAAAATAACACAA+CGG - chr1_2:9186154-9186173 None:intergenic 30.0%
AATCATAATATTCGCATTGC+GGG - chr1_2:9186329-9186348 None:intergenic 30.0%
GAATCATAATATTCGCATTG+CGG - chr1_2:9186330-9186349 None:intergenic 30.0%
TGAATTATCAGTATGAGTTG+TGG + chr1_2:9186373-9186392 Msa0054440:intron 30.0%
CTTGTGAGTTTGTATTTGTA+TGG - chr1_2:9186510-9186529 None:intergenic 30.0%
ACAAACTCACAAGCAAATTA+CGG + chr1_2:9186517-9186536 Msa0054440:intron 30.0%
GAGGTAAGATAAATGAAAGA+TGG + chr1_2:9186539-9186558 Msa0054440:intron 30.0%
! ATCTTTGTAACAGTCTGTTT+TGG + chr1_2:9186595-9186614 Msa0054440:intron 30.0%
! TCTTTGTAACAGTCTGTTTT+GGG + chr1_2:9186596-9186615 Msa0054440:intron 30.0%
TAAGCCATTTCCATTAACAT+TGG + chr1_2:9186715-9186734 Msa0054440:CDS 30.0%
TGAACCAATGTTAATGGAAA+TGG - chr1_2:9186722-9186741 None:intergenic 30.0%
!!! TGTATACTTTTTTCAGTACC+GGG + chr1_2:9186763-9186782 Msa0054440:intron 30.0%
TTAACTGTATAACTACAACC+CGG - chr1_2:9186784-9186803 None:intergenic 30.0%
AGTTATACAGTTAAACTGGT+TGG + chr1_2:9186790-9186809 Msa0054440:intron 30.0%
ACATGAATGTCTTCAATTTG+AGG + chr1_2:9187033-9187052 Msa0054440:intron 30.0%
!! TATTTTTAAGAACCAACGAG+AGG + chr1_2:9187194-9187213 Msa0054440:CDS 30.0%
! AAATATGGATTCAGGTATTG+TGG - chr1_2:9187368-9187387 None:intergenic 30.0%
! TTTTTCCATCAGATTTTGGA+AGG - chr1_2:9187444-9187463 None:intergenic 30.0%
CTTATGCCTGTTCAAAAAAA+CGG + chr1_2:9187473-9187492 Msa0054440:intron 30.0%
!!! GTATATCCGTTTTTTTGAAC+AGG - chr1_2:9187482-9187501 None:intergenic 30.0%
! AAGCATAGTTAATCCCTTTT+GGG + chr1_2:9187557-9187576 Msa0054440:intron 30.0%
!! ACACTGGTTTGATCAAAAAA+GGG - chr1_2:9187594-9187613 None:intergenic 30.0%
!! AACACTGGTTTGATCAAAAA+AGG - chr1_2:9187595-9187614 None:intergenic 30.0%
TGAGTGTCAGTTTATTTGTT+CGG + chr1_2:9187685-9187704 Msa0054440:CDS 30.0%
CAGTTTATTTGTTCGGAAAA+TGG + chr1_2:9187692-9187711 Msa0054440:CDS 30.0%
!!! TCTTAGATGGCATTTTTTTG+TGG - chr1_2:9187731-9187750 None:intergenic 30.0%
CGAGAACAAGAAAGTAAAAA+TGG + chr1_2:9187785-9187804 Msa0054440:CDS 30.0%
! TGTTTCAATCTCTTTCAAGT+AGG - chr1_2:9187832-9187851 None:intergenic 30.0%
AGTGGATCATGAAATTGAAA+AGG + chr1_2:9187950-9187969 Msa0054440:CDS 30.0%
AATTACTGCTCTGCATAAAA+TGG + chr1_2:9188073-9188092 Msa0054440:CDS 30.0%
TGGTAGCTAACATACAAAAA+AGG + chr1_2:9188093-9188112 Msa0054440:CDS 30.0%
GCAAAAACCTAAAAAGTAGT+AGG + chr1_2:9188115-9188134 Msa0054440:exon 30.0%
CTGCTATTCTTATAAAACTG+TGG + chr1_2:9188187-9188206 Msa0054440:three_prime_UTR 30.0%
! GCCACGTCTTTCATTTTATA+AGG + chr1_2:9181296-9181315 Msa0054440:five_prime_UTR 35.0%
!! TCTCCAAATTAGGGTTTTAG+AGG - chr1_2:9181408-9181427 None:intergenic 35.0%
GTTGAGGATTTCTCCAAATT+AGG - chr1_2:9181418-9181437 None:intergenic 35.0%
CAAAACTTATGCTAGTAGAC+AGG + chr1_2:9181926-9181945 Msa0054440:intron 35.0%
TTTAGTGATGAGTTAGAAGC+GGG + chr1_2:9181986-9182005 Msa0054440:intron 35.0%
CAAAACAAAGGAGATACTGT+AGG - chr1_2:9182136-9182155 None:intergenic 35.0%
TATTCAATCTGTGACACTCA+TGG - chr1_2:9182406-9182425 None:intergenic 35.0%
GATAAACAACTGAAACGGAA+AGG + chr1_2:9182517-9182536 Msa0054440:intron 35.0%
! AAAGGACTTTTCTCACTAAC+TGG + chr1_2:9182535-9182554 Msa0054440:intron 35.0%
ATGAATGCATAACAGTACCA+TGG - chr1_2:9182599-9182618 None:intergenic 35.0%
!!! TGTTTTTTATCAGCGAGTTC+TGG + chr1_2:9182669-9182688 Msa0054440:intron 35.0%
AACCCAATACCTTGTTCAAA+GGG - chr1_2:9182717-9182736 None:intergenic 35.0%
TTAAATTCTGATTGAAGCCG+CGG - chr1_2:9182890-9182909 None:intergenic 35.0%
! CGACTAATCTGATTTGAACT+AGG - chr1_2:9182956-9182975 None:intergenic 35.0%
! TTTTTGATGTATACACCTGC+TGG + chr1_2:9183105-9183124 Msa0054440:intron 35.0%
TTTCATTCATCTAAACCAGC+AGG - chr1_2:9183123-9183142 None:intergenic 35.0%
AACTAGACCGGAAAAACAAA+AGG - chr1_2:9183163-9183182 None:intergenic 35.0%
!! AGTATTAGTTTCTGGGGTTA+AGG - chr1_2:9183190-9183209 None:intergenic 35.0%
ACTTTAATGTGCATAGGTGT+TGG + chr1_2:9183207-9183226 Msa0054440:intron 35.0%
! GTACAAAAGAAAGGCATGAA+GGG + chr1_2:9183247-9183266 Msa0054440:CDS 35.0%
! AAAGGCATGAAGGGTAAAAT+GGG + chr1_2:9183256-9183275 Msa0054440:CDS 35.0%
GGAAAGGATATAAATCAGGA+GGG - chr1_2:9183449-9183468 None:intergenic 35.0%
AGGAAAGGATATAAATCAGG+AGG - chr1_2:9183450-9183469 None:intergenic 35.0%
GGGCGATTAACTTTATCTTT+AGG - chr1_2:9183470-9183489 None:intergenic 35.0%
GAAAATGAGTAAGACTGATC+TGG - chr1_2:9183494-9183513 None:intergenic 35.0%
!!! TCTTCTTGTGCTCAGTTTTT+TGG + chr1_2:9183512-9183531 Msa0054440:intron 35.0%
!!! AGTTTTTTGGCAACATCATG+CGG + chr1_2:9183525-9183544 Msa0054440:intron 35.0%
TATGAAAACATACCTGCTCA+GGG - chr1_2:9183604-9183623 None:intergenic 35.0%
TTATGAAAACATACCTGCTC+AGG - chr1_2:9183605-9183624 None:intergenic 35.0%
TTCTTACTTCACCATCCTTA+AGG + chr1_2:9183876-9183895 Msa0054440:intron 35.0%
TCTTACTTCACCATCCTTAA+GGG + chr1_2:9183877-9183896 Msa0054440:intron 35.0%
AAATGTTGAACCCTTAAGGA+TGG - chr1_2:9183890-9183909 None:intergenic 35.0%
! TAAGTCAGCTTTTATATGGC+AGG - chr1_2:9184027-9184046 None:intergenic 35.0%
! GTCGTGGTCTATTGAATTTT+AGG - chr1_2:9184095-9184114 None:intergenic 35.0%
TTCGTTGCCATCTATTGATA+AGG + chr1_2:9184382-9184401 Msa0054440:CDS 35.0%
! AACTCTGATCTCCTATTTTC+TGG + chr1_2:9184417-9184436 Msa0054440:intron 35.0%
CAAGTCAAGAAGTTCACATT+AGG - chr1_2:9184500-9184519 None:intergenic 35.0%
CATGACCAATTGAGAAATCA+AGG - chr1_2:9185325-9185344 None:intergenic 35.0%
GCTACAGTTTATAAGCATTC+GGG + chr1_2:9185421-9185440 Msa0054440:intron 35.0%
AACCTTAAGAAAAAGGCCAA+AGG + chr1_2:9185534-9185553 Msa0054440:CDS 35.0%
ACCTTAAGAAAAAGGCCAAA+GGG + chr1_2:9185535-9185554 Msa0054440:CDS 35.0%
AAATGGTTCTCTGTGAAGAT+GGG + chr1_2:9185592-9185611 Msa0054440:CDS 35.0%
! TGATGGTTCTTCCTTTTACT+CGG + chr1_2:9185674-9185693 Msa0054440:intron 35.0%
TAGTCTTTGATTGCTTTCTC+CGG - chr1_2:9185837-9185856 None:intergenic 35.0%
GACTACAAAACAGAGATTAC+TGG + chr1_2:9185852-9185871 Msa0054440:CDS 35.0%
TCCAATGGAACCATATTAGT+TGG + chr1_2:9186028-9186047 Msa0054440:CDS 35.0%
TCCAACTAATATGGTTCCAT+TGG - chr1_2:9186032-9186051 None:intergenic 35.0%
! AGTGTCGTGAACATTTTGTT+TGG + chr1_2:9186080-9186099 Msa0054440:intron 35.0%
TTTGTTTGGCTGTCTTTGAA+TGG + chr1_2:9186094-9186113 Msa0054440:intron 35.0%
TCTACAACGAAATTAGCAGT+AGG - chr1_2:9186120-9186139 None:intergenic 35.0%
!!! TTCCGTTGTGTTATTTTTCC+TGG + chr1_2:9186149-9186168 Msa0054440:intron 35.0%
GAAGCTTGATTATGTTAGAG+TGG + chr1_2:9186210-9186229 Msa0054440:CDS 35.0%
TGACACAAACTATTCAACGA+AGG - chr1_2:9186286-9186305 None:intergenic 35.0%
! TTCGTTGAATAGTTTGTGTC+AGG + chr1_2:9186285-9186304 Msa0054440:intron 35.0%
TGGTCATATGGTTATTCCTT+TGG + chr1_2:9186393-9186412 Msa0054440:intron 35.0%
TCATATGGTTATTCCTTTGG+AGG + chr1_2:9186396-9186415 Msa0054440:intron 35.0%
GTTCTTGCAAAGATCAAACA+TGG + chr1_2:9186686-9186705 Msa0054440:CDS 35.0%
!!! GTTTGCTGTTCTCTCATTTT+AGG + chr1_2:9186830-9186849 Msa0054440:intron 35.0%
TTAGGTTTCAGAAAGTGAGA+TGG + chr1_2:9186848-9186867 Msa0054440:intron 35.0%
AGAGGTTCATCCGTAATTAT+TGG + chr1_2:9187006-9187025 Msa0054440:intron 35.0%
!!! CTGGGCTATTTTTCTTGTTT+GGG + chr1_2:9187102-9187121 Msa0054440:intron 35.0%
GATGCATATGAAAATGTCCA+AGG + chr1_2:9187222-9187241 Msa0054440:CDS 35.0%
! ATTCGTTTGTTGATTAGCTG+AGG + chr1_2:9187308-9187327 Msa0054440:intron 35.0%
! TTCGTTTGTTGATTAGCTGA+GGG + chr1_2:9187309-9187328 Msa0054440:intron 35.0%
ATTCTCCTTCCAAAATCTGA+TGG + chr1_2:9187436-9187455 Msa0054440:intron 35.0%
!!! CGTTTTTTTGAACAGGCATA+AGG - chr1_2:9187475-9187494 None:intergenic 35.0%
! GAAGCATAGTTAATCCCTTT+TGG + chr1_2:9187556-9187575 Msa0054440:intron 35.0%
!! ACTGGTTTGATCAAAAAAGG+GGG - chr1_2:9187592-9187611 None:intergenic 35.0%
!! CACTGGTTTGATCAAAAAAG+GGG - chr1_2:9187593-9187612 None:intergenic 35.0%
TGTTGTGCATTACTTTGTGT+AGG + chr1_2:9187611-9187630 Msa0054440:intron 35.0%
TACTTTGTGTAGGACTCAAA+TGG + chr1_2:9187621-9187640 Msa0054440:intron 35.0%
ACTTTGTGTAGGACTCAAAT+GGG + chr1_2:9187622-9187641 Msa0054440:intron 35.0%
TCTGGTAAATCTCTCTTAGA+TGG - chr1_2:9187744-9187763 None:intergenic 35.0%
ATCTAAGAGAGATTTACCAG+AGG + chr1_2:9187743-9187762 Msa0054440:CDS 35.0%
TCTAAGAGAGATTTACCAGA+GGG + chr1_2:9187744-9187763 Msa0054440:CDS 35.0%
AATGGATCCTGAAGTTGAAA+AGG + chr1_2:9187803-9187822 Msa0054440:CDS 35.0%
AATCATTGAGAGAACAGTTG+AGG + chr1_2:9187889-9187908 Msa0054440:CDS 35.0%
! TGCTTCAATCTCTTTCAAGT+GGG - chr1_2:9187979-9187998 None:intergenic 35.0%
CTTCACTTTCTTTCAATCGT+TGG - chr1_2:9188007-9188026 None:intergenic 35.0%
ACGATTGAAAGAAAGTGAAG+CGG + chr1_2:9188007-9188026 Msa0054440:CDS 35.0%
AACCTAAAAAGTAGTAGGCA+TGG + chr1_2:9188120-9188139 Msa0054440:exon 35.0%
ATTCCTTCGAAACCATTCAC+CGG + chr1_2:9181441-9181460 Msa0054440:five_prime_UTR 40.0%
CAAGTGTATAATCTTGACGG+CGG - chr1_2:9181469-9181488 None:intergenic 40.0%
ACTGAACTGAATGAAGGGAA+AGG - chr1_2:9181515-9181534 None:intergenic 40.0%
TTAGTGATGAGTTAGAAGCG+GGG + chr1_2:9181987-9182006 Msa0054440:intron 40.0%
! GAAAGTTACCTTCTTTTCCG+CGG - chr1_2:9182109-9182128 None:intergenic 40.0%
TGCTTGATTAGATTGTTGGG+TGG + chr1_2:9182202-9182221 Msa0054440:intron 40.0%
ATGTGTGGTAAGACTAGACA+AGG + chr1_2:9182263-9182282 Msa0054440:intron 40.0%
AACAAGAGAGAGAGAGAGTT+GGG + chr1_2:9182302-9182321 Msa0054440:intron 40.0%
TATGTCATTATGTCCTGCCA+TGG + chr1_2:9182579-9182598 Msa0054440:intron 40.0%
!! GAGTTCTGGTTCTAGTGATA+AGG + chr1_2:9182683-9182702 Msa0054440:intron 40.0%
ACCCAATACCTTGTTCAAAG+GGG - chr1_2:9182716-9182735 None:intergenic 40.0%
GAACCCAATACCTTGTTCAA+AGG - chr1_2:9182718-9182737 None:intergenic 40.0%
! CAAAACTGCCACTGTTTTCA+AGG - chr1_2:9182915-9182934 None:intergenic 40.0%
GAACTAGGTAAACCCACTTA+CGG - chr1_2:9182941-9182960 None:intergenic 40.0%
GGTTAAGGAGAAAACTAGAC+CGG - chr1_2:9183175-9183194 None:intergenic 40.0%
! GGTACAAAAGAAAGGCATGA+AGG + chr1_2:9183246-9183265 Msa0054440:CDS 40.0%
! GAAAGGCATGAAGGGTAAAA+TGG + chr1_2:9183255-9183274 Msa0054440:CDS 40.0%
AAATGCAGCCAAAACCTCAT+GGG - chr1_2:9183353-9183372 None:intergenic 40.0%
AAAGACATTCTCAACGGATG+AGG + chr1_2:9183375-9183394 Msa0054440:CDS 40.0%
ATGAGTAAGACTGATCTGGA+GGG - chr1_2:9183490-9183509 None:intergenic 40.0%
AATGAGTAAGACTGATCTGG+AGG - chr1_2:9183491-9183510 None:intergenic 40.0%
ATGAAAACATACCTGCTCAG+GGG - chr1_2:9183603-9183622 None:intergenic 40.0%
CATCAGACAATTATCAGTCG+TGG - chr1_2:9184111-9184130 None:intergenic 40.0%
CTCTGTGATGCCAAAAGTTA+CGG - chr1_2:9184317-9184336 None:intergenic 40.0%
GATGGCAACGAATAATCCAT+TGG - chr1_2:9184374-9184393 None:intergenic 40.0%
ACATAGGCTGACCAGAAAAT+AGG - chr1_2:9184431-9184450 None:intergenic 40.0%
CAGCCTATGTGCATTCAAAA+TGG + chr1_2:9184441-9184460 Msa0054440:intron 40.0%
ATTTCATCCACAGACAATGG+TGG - chr1_2:9184928-9184947 None:intergenic 40.0%
TTTCAACTGTAGCCTCTGTT+AGG + chr1_2:9185080-9185099 Msa0054440:intron 40.0%
!! TCCCTTTGGCCTTTTTCTTA+AGG - chr1_2:9185539-9185558 None:intergenic 40.0%
TGTGGTAGATCTTATCCCTT+TGG - chr1_2:9185553-9185572 None:intergenic 40.0%
AGGGATAAGATCTACCACAA+TGG + chr1_2:9185554-9185573 Msa0054440:CDS 40.0%
ACAATCAACAGCAACCATTG+TGG - chr1_2:9185571-9185590 None:intergenic 40.0%
! GGTTGCTGTTGATTGTGAAA+TGG + chr1_2:9185575-9185594 Msa0054440:CDS 40.0%
GAAATGGTTCTCTGTGAAGA+TGG + chr1_2:9185591-9185610 Msa0054440:CDS 40.0%
TTGCTCCTTAGCTGATATAC+AGG + chr1_2:9185905-9185924 Msa0054440:CDS 40.0%
CAGTATGAGTTGTGGTCATA+TGG + chr1_2:9186381-9186400 Msa0054440:intron 40.0%
GTGTAACGAAATTCCTCCAA+AGG - chr1_2:9186412-9186431 None:intergenic 40.0%
AACTCACAAGCAAATTACGG+AGG + chr1_2:9186520-9186539 Msa0054440:intron 40.0%
!! CTGTTTTGGGCTATGAAGTT+CGG + chr1_2:9186609-9186628 Msa0054440:intron 40.0%
GGCTATGAAGTTCGGAAAAA+GGG + chr1_2:9186617-9186636 Msa0054440:intron 40.0%
GGCTCTTGAACCAATGTTAA+TGG - chr1_2:9186728-9186747 None:intergenic 40.0%
CACTACACGAAATTGTTCCT+GGG + chr1_2:9186916-9186935 Msa0054440:CDS 40.0%
ACTACACGAAATTGTTCCTG+GGG + chr1_2:9186917-9186936 Msa0054440:CDS 40.0%
GGACTTCACAATAGATCGAA+AGG + chr1_2:9186938-9186957 Msa0054440:CDS 40.0%
!! AATGTCAACAAGAGTACCGA+AGG - chr1_2:9187073-9187092 None:intergenic 40.0%
!!! GCTGGGCTATTTTTCTTGTT+TGG + chr1_2:9187101-9187120 Msa0054440:intron 40.0%
TTTCGTGATACCAAAGTAGC+AGG - chr1_2:9187289-9187308 None:intergenic 40.0%
! TCAGGTATTGTGGTAGTGAA+TGG - chr1_2:9187358-9187377 None:intergenic 40.0%
AGGGATTAACTATGCTTCAG+TGG - chr1_2:9187554-9187573 None:intergenic 40.0%
CACAAAGTAATGCACAACAC+TGG - chr1_2:9187610-9187629 None:intergenic 40.0%
! TAGGCATCCTTTTCAACTTC+AGG - chr1_2:9187813-9187832 None:intergenic 40.0%
ACGATTGAAAGAGAGTGAGT+TGG + chr1_2:9187860-9187879 Msa0054440:CDS 40.0%
GAGAGAACAGTTGAGGAAAA+AGG + chr1_2:9187896-9187915 Msa0054440:CDS 40.0%
GAGGAAAAAGGACTTACAAG+TGG + chr1_2:9187908-9187927 Msa0054440:CDS 40.0%
CTTACAAGTGGATGATTCCA+AGG + chr1_2:9187920-9187939 Msa0054440:CDS 40.0%
TGATTCCAAGGAAGGAAAAG+TGG + chr1_2:9187932-9187951 Msa0054440:CDS 40.0%
!! ATGATCCACTTTTCCTTCCT+TGG - chr1_2:9187940-9187959 None:intergenic 40.0%
GTGCTTCAATCTCTTTCAAG+TGG - chr1_2:9187980-9187999 None:intergenic 40.0%
GAGGGAACAGTTGAGAAAAA+AGG + chr1_2:9188043-9188062 Msa0054440:CDS 40.0%
!!! TGCCATGCCTACTACTTTTT+AGG - chr1_2:9188125-9188144 None:intergenic 40.0%
GGCAATGTCTTAAAACCGTT+TGG + chr1_2:9188208-9188227 Msa0054440:three_prime_UTR 40.0%
TTCATCATTCCACTTGCTCA+GGG - chr1_2:9188311-9188330 None:intergenic 40.0%
ATTCATCATTCCACTTGCTC+AGG - chr1_2:9188312-9188331 None:intergenic 40.0%
GTTTCGAAGGAATGTCGTTG+AGG - chr1_2:9181434-9181453 None:intergenic 45.0%
! ATAAACATAGCGGGGATGTG+TGG + chr1_2:9182248-9182267 Msa0054440:intron 45.0%
TGTGGTAAGACTAGACAAGG+TGG + chr1_2:9182266-9182285 Msa0054440:intron 45.0%
GTGGTAAGACTAGACAAGGT+GGG + chr1_2:9182267-9182286 Msa0054440:intron 45.0%
CAACAAGAGAGAGAGAGAGT+TGG + chr1_2:9182301-9182320 Msa0054440:intron 45.0%
ACAAGAGAGAGAGAGAGTTG+GGG + chr1_2:9182303-9182322 Msa0054440:intron 45.0%
ATGCATAACAGTACCATGGC+AGG - chr1_2:9182595-9182614 None:intergenic 45.0%
! GAGTTTTCCCCCTTTGAACA+AGG + chr1_2:9182705-9182724 Msa0054440:intron 45.0%
TCCCCCTTTGAACAAGGTAT+TGG + chr1_2:9182711-9182730 Msa0054440:intron 45.0%
CCCAATACCTTGTTCAAAGG+GGG - chr1_2:9182715-9182734 None:intergenic 45.0%
! CCCCCTTTGAACAAGGTATT+GGG + chr1_2:9182712-9182731 Msa0054440:intron 45.0%
CACAATTACGGTCATGATGC+TGG - chr1_2:9182815-9182834 None:intergenic 45.0%
CAGCATCATGACCGTAATTG+TGG + chr1_2:9182813-9182832 Msa0054440:intron 45.0%
!! GCAGTTTTGTCTCCGTAAGT+GGG + chr1_2:9182926-9182945 Msa0054440:intron 45.0%
TGAAGGGTAAAATGGGAGAC+TGG + chr1_2:9183263-9183282 Msa0054440:CDS 45.0%
GTATGAGCGATCCATCAAAG+AGG + chr1_2:9183326-9183345 Msa0054440:CDS 45.0%
! AAAGAGGTCCCATGAGGTTT+TGG + chr1_2:9183342-9183361 Msa0054440:CDS 45.0%
GAAATGCAGCCAAAACCTCA+TGG - chr1_2:9183354-9183373 None:intergenic 45.0%
CTCAACGGATGAGGATTTGA+AGG + chr1_2:9183384-9183403 Msa0054440:CDS 45.0%
CTTCCTCTTAAAGCCATACC+CGG + chr1_2:9183835-9183854 Msa0054440:intron 45.0%
ATCAGCCACAAGCACATAGT+AGG - chr1_2:9184203-9184222 None:intergenic 45.0%
TATGTGCTTGTGGCTGATGA+TGG + chr1_2:9184205-9184224 Msa0054440:intron 45.0%
ATGTGCTTGTGGCTGATGAT+GGG + chr1_2:9184206-9184225 Msa0054440:intron 45.0%
! CGTAACTTTTGGCATCACAG+AGG + chr1_2:9184315-9184334 Msa0054440:intron 45.0%
TGCTGTGGAAAATGAAGGGA+TGG + chr1_2:9185502-9185521 Msa0054440:intron 45.0%
TGAAGATGGGACTGAAGCTT+TGG + chr1_2:9185605-9185624 Msa0054440:CDS 45.0%
ATGACGAGTCACCGAGTAAA+AGG - chr1_2:9185688-9185707 None:intergenic 45.0%
AGCGCAATGCCTCAATCTTT+GGG - chr1_2:9185730-9185749 None:intergenic 45.0%
AAGCGCAATGCCTCAATCTT+TGG - chr1_2:9185731-9185750 None:intergenic 45.0%
TGCATACATCTTCCAACCCT+TGG + chr1_2:9186240-9186259 Msa0054440:CDS 45.0%
TACATCTTCCAACCCTTGGA+TGG + chr1_2:9186244-9186263 Msa0054440:CDS 45.0%
GGGCTATGAAGTTCGGAAAA+AGG + chr1_2:9186616-9186635 Msa0054440:intron 45.0%
TAGTGCTTCAGTGTTCACAG+TGG - chr1_2:9186901-9186920 None:intergenic 45.0%
GCACTACACGAAATTGTTCC+TGG + chr1_2:9186915-9186934 Msa0054440:CDS 45.0%
CAGAACAGTGGGATGCTTAA+AGG - chr1_2:9186982-9187001 None:intergenic 45.0%
TTAAGCATCCCACTGTTCTG+AGG + chr1_2:9186982-9187001 Msa0054440:intron 45.0%
AACCTCTTCCTCAGAACAGT+GGG - chr1_2:9186993-9187012 None:intergenic 45.0%
TGTTGACATTCAGTCACTGC+TGG + chr1_2:9187083-9187102 Msa0054440:intron 45.0%
GTTGACATTCAGTCACTGCT+GGG + chr1_2:9187084-9187103 Msa0054440:intron 45.0%
TTGCTTCAGCCTTCCAGAAA+CGG + chr1_2:9187144-9187163 Msa0054440:intron 45.0%
CTTATCTCCTTGACCGTTTC+TGG - chr1_2:9187160-9187179 None:intergenic 45.0%
! ATGCTCAATGCCTGCTACTT+TGG + chr1_2:9187276-9187295 Msa0054440:intron 45.0%
TGCAGAAACTTGTCACGTGT+CGG + chr1_2:9187649-9187668 Msa0054440:CDS 45.0%
CAAGTGGATGATTCCAAGGA+AGG + chr1_2:9187924-9187943 Msa0054440:CDS 45.0%
AAGCGGAGATTGAATCATCG+AGG + chr1_2:9188024-9188043 Msa0054440:CDS 45.0%
AGCGGAGATTGAATCATCGA+GGG + chr1_2:9188025-9188044 Msa0054440:CDS 45.0%
AAAAGTAGTAGGCATGGCAC+TGG + chr1_2:9188126-9188145 Msa0054440:exon 45.0%
!! AAATTTTGGCCCTGAGCAAG+TGG + chr1_2:9188299-9188318 Msa0054440:three_prime_UTR 45.0%
CGGCGACTGAACTGAATGAA+GGG - chr1_2:9181520-9181539 None:intergenic 50.0%
CCTTCATTCAGTTCAGTCGC+CGG + chr1_2:9181518-9181537 Msa0054440:intron 50.0%
! AGGTTAACTTGGGGCCTGTT+TGG + chr1_2:9181667-9181686 Msa0054440:intron 50.0%
TGAGTTAGAAGCGGGGTTAG+TGG + chr1_2:9181994-9182013 Msa0054440:intron 50.0%
! GAGTTAGAAGCGGGGTTAGT+GGG + chr1_2:9181995-9182014 Msa0054440:intron 50.0%
GGATGAGAAGATTGACACCG+CGG + chr1_2:9182089-9182108 Msa0054440:CDS 50.0%
GATTGACACCGCGGAAAAGA+AGG + chr1_2:9182098-9182117 Msa0054440:CDS 50.0%
GCGTGCTGCAATCTCTTGAA+TGG - chr1_2:9182861-9182880 None:intergenic 50.0%
!! GGCAGTTTTGTCTCCGTAAG+TGG + chr1_2:9182925-9182944 Msa0054440:intron 50.0%
GGGTAAAATGGGAGACTGGA+AGG + chr1_2:9183267-9183286 Msa0054440:CDS 50.0%
TCCATCAAAGAGGTCCCATG+AGG + chr1_2:9183336-9183355 Msa0054440:CDS 50.0%
ACCTCATGGGACCTCTTTGA+TGG - chr1_2:9183340-9183359 None:intergenic 50.0%
!! CGGGTATGGCTTTAAGAGGA+AGG - chr1_2:9183837-9183856 None:intergenic 50.0%
AAGCCAAAGACACATGCAGC+CGG - chr1_2:9183857-9183876 None:intergenic 50.0%
CGCTTCCTACTATGTGCTTG+TGG + chr1_2:9184195-9184214 Msa0054440:intron 50.0%
!! TAGGGTGCTGGAGAGTTACT+TGG - chr1_2:9184346-9184365 None:intergenic 50.0%
CCATTGGATACATAGGGTGC+TGG - chr1_2:9184358-9184377 None:intergenic 50.0%
CCAGCACCCTATGTATCCAA+TGG + chr1_2:9184355-9184374 Msa0054440:CDS 50.0%
!! AAAAGCGCCACCATTGTCTG+TGG + chr1_2:9184918-9184937 Msa0054440:intron 50.0%
TGTAGCCTCTGTTAGGAGAG+AGG + chr1_2:9185087-9185106 Msa0054440:intron 50.0%
TAAGGCCTCTCTCCTAACAG+AGG - chr1_2:9185095-9185114 None:intergenic 50.0%
TTTGGGCAGGTAGGGAAGAA+GGG - chr1_2:9185713-9185732 None:intergenic 50.0%
CCTCAATCTTTGGGCAGGTA+GGG - chr1_2:9185721-9185740 None:intergenic 50.0%
CAATGCCTCAATCTTTGGGC+AGG - chr1_2:9185726-9185745 None:intergenic 50.0%
GAATAGAGCCATCCAAGGGT+TGG - chr1_2:9186255-9186274 None:intergenic 50.0%
ATCTGTGCTTGTCTGCGCTT+TGG + chr1_2:9186468-9186487 Msa0054440:intron 50.0%
GCTTCAGTGTTCACAGTGGT+TGG - chr1_2:9186897-9186916 None:intergenic 50.0%
CGATCTATTGTGAAGTCCCC+AGG - chr1_2:9186936-9186955 None:intergenic 50.0%
!! ATCCCACTGTTCTGAGGAAG+AGG + chr1_2:9186988-9187007 Msa0054440:intron 50.0%
GAACCTCTTCCTCAGAACAG+TGG - chr1_2:9186994-9187013 None:intergenic 50.0%
! TCTCCTTGACCGTTTCTGGA+AGG - chr1_2:9187156-9187175 None:intergenic 50.0%
ATGCATCATGTGCCTCTCGT+TGG - chr1_2:9187209-9187228 None:intergenic 50.0%
TGTCCAAGGCAGCCAAACAA+AGG + chr1_2:9187236-9187255 Msa0054440:CDS 50.0%
! GTACCTTTGTTTGGCTGCCT+TGG - chr1_2:9187242-9187261 None:intergenic 50.0%
AGATTTACCAGAGGGCGAGA+TGG + chr1_2:9187752-9187771 Msa0054440:CDS 50.0%
! GTAGGCATGGCACTGGAATA+TGG + chr1_2:9188133-9188152 Msa0054440:exon 50.0%
TATAATCTTGACGGCGGCGC+CGG - chr1_2:9181463-9181482 None:intergenic 55.0%
CCGGCGACTGAACTGAATGA+AGG - chr1_2:9181521-9181540 None:intergenic 55.0%
CGGTCATGATGCTGGTGCAA+TGG - chr1_2:9182807-9182826 None:intergenic 55.0%
ATCTCACGATTCCCCTGAGC+AGG + chr1_2:9183589-9183608 Msa0054440:CDS 55.0%
!! CAGCCGGGTATGGCTTTAAG+AGG - chr1_2:9183841-9183860 None:intergenic 55.0%
AAGACACATGCAGCCGGGTA+TGG - chr1_2:9183851-9183870 None:intergenic 55.0%
TACCCGGCTGCATGTGTCTT+TGG + chr1_2:9183851-9183870 Msa0054440:intron 55.0%
AGCCAAAGACACATGCAGCC+GGG - chr1_2:9183856-9183875 None:intergenic 55.0%
TTGGGCAGGTAGGGAAGAAG+GGG - chr1_2:9185712-9185731 None:intergenic 55.0%
CTTTGGGCAGGTAGGGAAGA+AGG - chr1_2:9185714-9185733 None:intergenic 55.0%
CCCTACCTGCCCAAAGATTG+AGG + chr1_2:9185718-9185737 Msa0054440:intron 55.0%
GCCTCAATCTTTGGGCAGGT+AGG - chr1_2:9185722-9185741 None:intergenic 55.0%
CAGCCTTCCAGAAACGGTCA+AGG + chr1_2:9187150-9187169 Msa0054440:intron 55.0%
!! TGTCACGTGTCGGCTGAGTA+CGG + chr1_2:9187659-9187678 Msa0054440:CDS 55.0%
ACATCAACCATCTCGCCCTC+TGG - chr1_2:9187762-9187781 None:intergenic 55.0%
! GCGCCGGTGAATGGTTTCGA+AGG - chr1_2:9181447-9181466 None:intergenic 60.0%
TTGCAGCACGCTTGCAACCG+CGG + chr1_2:9182870-9182889 Msa0054440:intron 60.0%
GGGGAGCAGCAAGCCCAAAA+GGG - chr1_2:9187573-9187592 None:intergenic 60.0%
!! GTCACGTGTCGGCTGAGTAC+GGG + chr1_2:9187660-9187679 Msa0054440:CDS 60.0%
GGGGGAGCAGCAAGCCCAAA+AGG - chr1_2:9187574-9187593 None:intergenic 65.0%
!! TTGACGGCGGCGCCGGTGAA+TGG - chr1_2:9181456-9181475 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 9181275 9188489 9181275 ID=Msa0054440;Name=Msa0054440
chr1_2 mRNA 9181275 9188489 9181275 ID=Msa0054440-mRNA-1;Parent=Msa0054440;Name=Msa0054440-mRNA-1;_AED=0.08;_eAED=0.08;_QI=259|0.91|0.84|1|0.66|0.69|13|356|540
chr1_2 exon 9181275 9181498 9181275 ID=Msa0054440-mRNA-1:exon:3286;Parent=Msa0054440-mRNA-1
chr1_2 exon 9182052 9182119 9182052 ID=Msa0054440-mRNA-1:exon:3287;Parent=Msa0054440-mRNA-1
chr1_2 exon 9183223 9183405 9183223 ID=Msa0054440-mRNA-1:exon:3288;Parent=Msa0054440-mRNA-1
chr1_2 exon 9183527 9183610 9183527 ID=Msa0054440-mRNA-1:exon:3289;Parent=Msa0054440-mRNA-1
chr1_2 exon 9184335 9184403 9184335 ID=Msa0054440-mRNA-1:exon:3290;Parent=Msa0054440-mRNA-1
chr1_2 exon 9185519 9185659 9185519 ID=Msa0054440-mRNA-1:exon:3291;Parent=Msa0054440-mRNA-1
chr1_2 exon 9185810 9185926 9185810 ID=Msa0054440-mRNA-1:exon:3292;Parent=Msa0054440-mRNA-1
chr1_2 exon 9186007 9186076 9186007 ID=Msa0054440-mRNA-1:exon:3293;Parent=Msa0054440-mRNA-1
chr1_2 exon 9186206 9186295 9186206 ID=Msa0054440-mRNA-1:exon:3294;Parent=Msa0054440-mRNA-1
chr1_2 exon 9186627 9186748 9186627 ID=Msa0054440-mRNA-1:exon:3295;Parent=Msa0054440-mRNA-1
chr1_2 exon 9186852 9186959 9186852 ID=Msa0054440-mRNA-1:exon:3296;Parent=Msa0054440-mRNA-1
chr1_2 exon 9187153 9187257 9187153 ID=Msa0054440-mRNA-1:exon:3297;Parent=Msa0054440-mRNA-1
chr1_2 exon 9187633 9188489 9187633 ID=Msa0054440-mRNA-1:exon:3298;Parent=Msa0054440-mRNA-1
chr1_2 five_prime_UTR 9181275 9181498 9181275 ID=Msa0054440-mRNA-1:five_prime_utr;Parent=Msa0054440-mRNA-1
chr1_2 five_prime_UTR 9182052 9182086 9182052 ID=Msa0054440-mRNA-1:five_prime_utr;Parent=Msa0054440-mRNA-1
chr1_2 CDS 9182087 9182119 9182087 ID=Msa0054440-mRNA-1:cds;Parent=Msa0054440-mRNA-1
chr1_2 CDS 9183223 9183405 9183223 ID=Msa0054440-mRNA-1:cds;Parent=Msa0054440-mRNA-1
chr1_2 CDS 9183527 9183610 9183527 ID=Msa0054440-mRNA-1:cds;Parent=Msa0054440-mRNA-1
chr1_2 CDS 9184335 9184403 9184335 ID=Msa0054440-mRNA-1:cds;Parent=Msa0054440-mRNA-1
chr1_2 CDS 9185519 9185659 9185519 ID=Msa0054440-mRNA-1:cds;Parent=Msa0054440-mRNA-1
chr1_2 CDS 9185810 9185926 9185810 ID=Msa0054440-mRNA-1:cds;Parent=Msa0054440-mRNA-1
chr1_2 CDS 9186007 9186076 9186007 ID=Msa0054440-mRNA-1:cds;Parent=Msa0054440-mRNA-1
chr1_2 CDS 9186206 9186295 9186206 ID=Msa0054440-mRNA-1:cds;Parent=Msa0054440-mRNA-1
chr1_2 CDS 9186627 9186748 9186627 ID=Msa0054440-mRNA-1:cds;Parent=Msa0054440-mRNA-1
chr1_2 CDS 9186852 9186959 9186852 ID=Msa0054440-mRNA-1:cds;Parent=Msa0054440-mRNA-1
chr1_2 CDS 9187153 9187257 9187153 ID=Msa0054440-mRNA-1:cds;Parent=Msa0054440-mRNA-1
chr1_2 CDS 9187633 9188133 9187633 ID=Msa0054440-mRNA-1:cds;Parent=Msa0054440-mRNA-1
chr1_2 three_prime_UTR 9188134 9188489 9188134 ID=Msa0054440-mRNA-1:three_prime_utr;Parent=Msa0054440-mRNA-1
Gene Sequence

>Msa0054440

ATGGATGAGAAGATTGACACCGCGGAAAAGAAGGTGTTGGTTGATATTGTAAAATTGGTACAAAAGAAAGGCATGAAGGGTAAAATGGGAGACTGGAAGGAATTCCTGAACAGTAATGATAAAAAATATGGGTCAGGTATGAGCGATCCATCAAAGAGGTCCCATGAGGTTTTGGCTGCATTTCTAAAGACATTCTCAACGGATGAGGATTTGAAGTTTTTTGGCAACATCATGCGGCATCATTCAAATCAATACACATTAGAGCGACTGAAAGATAGATCTCACGATTCCCCTGAGCAGAGGCTAGTCCAAGTAACTCTCCAGCACCCTATGTATCCAATGGATTATTCGTTGCCATCTATTGATAAGGGATGGTTAGTGATAAACCTTAAGAAAAAGGCCAAAGGGATAAGATCTACCACAATGGTTGCTGTTGATTGTGAAATGGTTCTCTGTGAAGATGGGACTGAAGCTTTGGTCAAAGTCTGTGTTGTAGATCACAATTTAGAGGTCAAATTACACAAACTTGTTAAACCGGAGAAAGCAATCAAAGACTACAAAACAGAGATTACTGGTGTCTCTGCTCAAGATCTAGAGACAGTGACTTGCTCCTTAGCTGATATACAGAAATCGATGAAGAAGTTGTTATCCAATGGAACCATATTAGTTGGACACAGTTTATATAATGATCTACGTGTGCTGAAGCTTGATTATGTTAGAGTGGTCGACACTGCATACATCTTCCAACCCTTGGATGGCTCTATTCACAGGAGACCTTCGTTGAATATTCGGAAAAAGGGTGCTTCGCATGATTGTCTAGATGATGCATGTGCAACAATGAAACTTGTTCTTGCAAAGATCAAACATGGTGTTGATAAGCCATTTCCATTAACATTGGTTCAAGAGCCTGTTTCAGAAAGTGAGATGGCGAAGCTGCTTATTCACAGAATACCAACCACTGTGAACACTGAAGCACTACACGAAATTGTTCCTGGGGACTTCACAATAGATCGAAAGCCTTCCAGAAACGGTCAAGGAGATAAGTATTCTGCCTTAGCTATTTTTAAGAACCAACGAGAGGCACATGATGCATATGAAAATGTCCAAGGCAGCCAAACAAAGGACTCAAATGGGCGTCTGCAGAAACTTGTCACGTGTCGGCTGAGTACGGGCATGAGTGTCAGTTTATTTGTTCGGAAAATGGGAATTGATGATCACCACAAAAAAATGCCATCTAAGAGAGATTTACCAGAGGGCGAGATGGTTGATGTTCCCGAGAACAAGAAAGTAAAAATGGATCCTGAAGTTGAAAAGGATGCCTACTTGAAAGAGATTGAAACACTGAATCAACGATTGAAAGAGAGTGAGTTGGAGATTGAATCATTGAGAGAACAGTTGAGGAAAAAGGACTTACAAGTGGATGATTCCAAGGAAGGAAAAGTGGATCATGAAATTGAAAAGGATGCCCACTTGAAAGAGATTGAAGCACTGAACCAACGATTGAAAGAAAGTGAAGCGGAGATTGAATCATCGAGGGAACAGTTGAGAAAAAAGGACTTCGAAATTACTGCTCTGCATAAAATGGTAGCTAACATACAAAAAAGGCAAAAACCTAAAAAGTAG

Protein sequence

>Msa0054440

MDEKIDTAEKKVLVDIVKLVQKKGMKGKMGDWKEFLNSNDKKYGSGMSDPSKRSHEVLAAFLKTFSTDEDLKFFGNIMRHHSNQYTLERLKDRSHDSPEQRLVQVTLQHPMYPMDYSLPSIDKGWLVINLKKKAKGIRSTTMVAVDCEMVLCEDGTEALVKVCVVDHNLEVKLHKLVKPEKAIKDYKTEITGVSAQDLETVTCSLADIQKSMKKLLSNGTILVGHSLYNDLRVLKLDYVRVVDTAYIFQPLDGSIHRRPSLNIRKKGASHDCLDDACATMKLVLAKIKHGVDKPFPLTLVQEPVSESEMAKLLIHRIPTTVNTEALHEIVPGDFTIDRKPSRNGQGDKYSALAIFKNQREAHDAYENVQGSQTKDSNGRLQKLVTCRLSTGMSVSLFVRKMGIDDHHKKMPSKRDLPEGEMVDVPENKKVKMDPEVEKDAYLKEIETLNQRLKESELEIESLREQLRKKDLQVDDSKEGKVDHEIEKDAHLKEIEALNQRLKESEAEIESSREQLRKKDFEITALHKMVANIQKRQKPKK*