Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0045080 | Msa0045090 | 0.877359 | 6.695037e-69 | -8.615850e-47 |
| Msa0045090 | Msa0045100 | 0.894972 | 1.490411e-75 | -8.615850e-47 |
| Msa0045090 | Msa0045120 | 0.950035 | 3.774940e-108 | -8.615850e-47 |
| Msa0045090 | Msa0045140 | 0.939242 | 1.765905e-99 | -8.615850e-47 |
| Msa0045090 | Msa0045150 | 0.956376 | 3.415563e-114 | -8.615850e-47 |
| Msa0045090 | Msa0045160 | 0.896254 | 4.399935e-76 | -8.615850e-47 |
| Msa0045090 | Msa0045190 | 0.869742 | 2.464233e-66 | -8.615850e-47 |
| Msa0045090 | Msa0045350 | 0.964829 | 8.020949e-124 | -8.615850e-47 |
| Msa0045090 | Msa0045370 | 0.943807 | 6.173943e-103 | -8.615850e-47 |
| Msa0045090 | Msa0045380 | 0.866630 | 2.476743e-65 | -8.615850e-47 |
| Msa0045090 | Msa0045400 | 0.911643 | 4.818733e-83 | -8.615850e-47 |
| Msa0045090 | Msa0045440 | 0.837188 | 6.023105e-57 | -8.615850e-47 |
| Msa0045090 | Msa0291070 | 0.805222 | 1.481767e-49 | -8.615850e-47 |
| Msa0045090 | Msa0391340 | 0.807199 | 5.680366e-50 | -8.615850e-47 |
| Msa0045090 | Msa0391360 | 0.800083 | 1.701921e-48 | -8.615850e-47 |
| Msa0045090 | Msa0418800 | -0.803848 | 2.865452e-49 | -8.615850e-47 |
| Msa0045090 | Msa0484480 | 0.837212 | 5.939186e-57 | -8.615850e-47 |
| Msa0045090 | Msa1084980 | 0.860926 | 1.469146e-63 | -8.615850e-47 |
| Msa0045090 | Msa1085000 | 0.981252 | 3.870024e-152 | -8.615850e-47 |
| Msa0045090 | Msa1085010 | 0.873404 | 1.509102e-67 | -8.615850e-47 |
| Msa0045090 | Msa1310870 | 0.804613 | 1.986494e-49 | -8.615850e-47 |
| Msa0045090 | Msa1426790 | 0.914652 | 1.491083e-84 | -8.615850e-47 |
| Msa0045090 | Msa1426820 | 0.888400 | 6.108804e-73 | -8.615850e-47 |
| Msa0045090 | Msa1426840 | 0.884413 | 1.959661e-71 | -8.615850e-47 |
| Msa0045090 | Msa1432570 | 0.849235 | 3.682016e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0045090 | MtrunA17_Chr2g0301881 | 76.190 | 42 | 10 | 0 | 40 | 81 | 303 | 344 | 1.02e-12 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 27 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCTTGGTCGTGCTTATTT+TGG | 0.178155 | 1_1:-76787492 | Msa0045090:CDS |
| ATCAATTTATTTCAAGTAGT+TGG | 0.311082 | 1_1:-76787286 | Msa0045090:three_prime_UTR |
| AGCTGCATACATTTAACCTT+TGG | 0.369719 | 1_1:-76787389 | Msa0045090:three_prime_UTR |
| TGGACTAGGTGTAAATCTAT+TGG | 0.372492 | 1_1:-76787266 | Msa0045090:three_prime_UTR |
| AACAAGTTGTTTAATAGCAT+TGG | 0.401520 | 1_1:-76787312 | Msa0045090:three_prime_UTR |
| ATGCAGCTCGGAACACGTTC+AGG | 0.405907 | 1_1:+76787404 | None:intergenic |
| TTAATTTCATAGCACGTAGC+TGG | 0.411589 | 1_1:+76787333 | None:intergenic |
| ATGAAATCACTTGCAAAAGA+TGG | 0.438991 | 1_1:+76788414 | None:intergenic |
| GGACTAGGTGTAAATCTATT+GGG | 0.449499 | 1_1:-76787265 | Msa0045090:three_prime_UTR |
| CACTTGCAAAAGATGGAGAC+AGG | 0.478454 | 1_1:+76788421 | None:intergenic |
| AGAGCTTGGTGTAGTCCTCT+TGG | 0.517761 | 1_1:-76787507 | Msa0045090:CDS |
| TTATTTCAAGTAGTTGGACT+AGG | 0.530204 | 1_1:-76787280 | Msa0045090:three_prime_UTR |
| GTGCAACATACATTTAACCT+TGG | 0.533755 | 1_1:-76787447 | Msa0045090:CDS |
| CCTTCATTAGCTCTTCAAGC+AGG | 0.534184 | 1_1:+76788367 | None:intergenic |
| TGTCACGTCTTCTGATTCTC+CGG | 0.535001 | 1_1:-76790388 | Msa0045090:intron |
| TAATTTCATAGCACGTAGCT+GGG | 0.547817 | 1_1:+76787334 | None:intergenic |
| AAGAAAACGACGGGATTGAG+AGG | 0.586955 | 1_1:+76790425 | None:intergenic |
| TCGATTGAGAAGAAAACGAC+GGG | 0.590073 | 1_1:+76790416 | None:intergenic |
| CCTGCTTGAAGAGCTAATGA+AGG | 0.599554 | 1_1:-76788367 | Msa0045090:intron |
| ATTAGCTCTTCAAGCAGGCG+AGG | 0.618540 | 1_1:+76788372 | None:intergenic |
| CCAAAATAAGCACGACCAAG+AGG | 0.622212 | 1_1:+76787492 | None:intergenic |
| AAGGTTAAATGTATGCAGCT+CGG | 0.635793 | 1_1:+76787392 | None:intergenic |
| ACTCTAGAGTGATATACCAA+AGG | 0.656240 | 1_1:+76787373 | None:intergenic |
| CTCGATTGAGAAGAAAACGA+CGG | 0.679795 | 1_1:+76790415 | None:intergenic |
| GAGGTTGATGAAGAAGACGA+CGG | 0.681666 | 1_1:+76790444 | None:intergenic |
| ACTTGCAAAAGATGGAGACA+GGG | 0.688727 | 1_1:+76788422 | None:intergenic |
| AATTCTAGAGTGATATACCA+AGG | 0.688891 | 1_1:+76787430 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATAATGAAAATATGTAT+TGG | + | chr1_1:76787258-76787277 | None:intergenic | 10.0% |
| !!! | ATATTTTAATTGAGAAAATT+GGG | - | chr1_1:76788337-76788356 | Msa0045090:intron | 10.0% |
| !!! | TTTTTTTACTTAAGCTTTAA+AGG | - | chr1_1:76787353-76787372 | Msa0045090:three_prime_UTR | 15.0% |
| !!! | TATCTCAATATATTTTGATT+TGG | - | chr1_1:76788035-76788054 | Msa0045090:intron | 15.0% |
| !!! | CATATTTTAATTGAGAAAAT+TGG | - | chr1_1:76788336-76788355 | Msa0045090:intron | 15.0% |
| !!! | AAATATTTTGAATTCGATTT+GGG | + | chr1_1:76788496-76788515 | None:intergenic | 15.0% |
| !!! | AAAATATTTTGAATTCGATT+TGG | + | chr1_1:76788497-76788516 | None:intergenic | 15.0% |
| !!! | TTTTAATTTTCTGTTTACTT+TGG | - | chr1_1:76788842-76788861 | Msa0045090:intron | 15.0% |
| !! | CAAAAAAAGAATACATTATT+TGG | + | chr1_1:76789804-76789823 | None:intergenic | 15.0% |
| !!! | TATTTTACTTATTGAAAAAC+TGG | - | chr1_1:76790104-76790123 | Msa0045090:intron | 15.0% |
| !!! | ATTTTACTTATTGAAAAACT+GGG | - | chr1_1:76790105-76790124 | Msa0045090:intron | 15.0% |
| !!! | AAACTACATAAATTTAAAGT+AGG | - | chr1_1:76790140-76790159 | Msa0045090:intron | 15.0% |
| !! | TGATAATCTTAATTTAAATG+TGG | + | chr1_1:76790296-76790315 | None:intergenic | 15.0% |
| !! | AGTATCTCAAAAACAAAAAT+AGG | + | chr1_1:76787448-76787467 | None:intergenic | 20.0% |
| !! | TCAACTAAAATACAAACTAT+CGG | + | chr1_1:76787515-76787534 | None:intergenic | 20.0% |
| !! | AAATTGTTAAAGTGTAAAGT+GGG | + | chr1_1:76787717-76787736 | None:intergenic | 20.0% |
| !!! | AATATTTTGAATTCGATTTG+GGG | + | chr1_1:76788495-76788514 | None:intergenic | 20.0% |
| !! | AATATACACCATATATGAAT+CGG | + | chr1_1:76788746-76788765 | None:intergenic | 20.0% |
| !! | TTCATATATGGTGTATATTT+AGG | - | chr1_1:76788747-76788766 | Msa0045090:intron | 20.0% |
| !!! | ACTTATTGTTAAGGAAATTT+TGG | - | chr1_1:76788913-76788932 | Msa0045090:intron | 20.0% |
| !! | TTAGATGTAATCATCATTAA+AGG | - | chr1_1:76789100-76789119 | Msa0045090:intron | 20.0% |
| !! | TAGATGTAATCATCATTAAA+GGG | - | chr1_1:76789101-76789120 | Msa0045090:intron | 20.0% |
| !! | TCTAAACGAAAATATCATAA+GGG | + | chr1_1:76789873-76789892 | None:intergenic | 20.0% |
| !! | ATTTATCTTATCTTATGTGA+TGG | - | chr1_1:76790370-76790389 | Msa0045090:intron | 20.0% |
| !!! | ATCAATTTATTTCAAGTAGT+TGG | - | chr1_1:76791073-76791092 | Msa0045090:intron | 20.0% |
| ! | AACTAAAATACAAACTATCG+GGG | + | chr1_1:76787513-76787532 | None:intergenic | 25.0% |
| ! | CAACTAAAATACAAACTATC+GGG | + | chr1_1:76787514-76787533 | None:intergenic | 25.0% |
| ! | AAGATGACTAAAAGTGAATT+GGG | + | chr1_1:76787549-76787568 | None:intergenic | 25.0% |
| ! | AAAGATGACTAAAAGTGAAT+TGG | + | chr1_1:76787550-76787569 | None:intergenic | 25.0% |
| !!! | AGATCTTTTTGGCAAAATTA+GGG | + | chr1_1:76787647-76787666 | None:intergenic | 25.0% |
| !!! | AAGATCTTTTTGGCAAAATT+AGG | + | chr1_1:76787648-76787667 | None:intergenic | 25.0% |
| ! | CAAATTGTTAAAGTGTAAAG+TGG | + | chr1_1:76787718-76787737 | None:intergenic | 25.0% |
| ! | CACTTTACACTTTAACAATT+TGG | - | chr1_1:76787716-76787735 | Msa0045090:intron | 25.0% |
| !!! | GTTAATAAGATGGTTTTAGT+TGG | + | chr1_1:76787800-76787819 | None:intergenic | 25.0% |
| ! | TTAATTGAGAAAATTGGGTT+TGG | - | chr1_1:76788342-76788361 | Msa0045090:intron | 25.0% |
| !!! | TTTTAATTTTTGTGCTGAAG+TGG | - | chr1_1:76788387-76788406 | Msa0045090:CDS | 25.0% |
| ! | AATAAACAAAAGGAAGAAAG+AGG | + | chr1_1:76788822-76788841 | None:intergenic | 25.0% |
| ! | GGATGATATACTTATTGTTA+AGG | - | chr1_1:76788904-76788923 | Msa0045090:intron | 25.0% |
| ! | AATTAGATATCAGTTGCTAA+AGG | - | chr1_1:76789001-76789020 | Msa0045090:intron | 25.0% |
| ! | ATTCCTAGATATGAGAAAAT+GGG | + | chr1_1:76789040-76789059 | None:intergenic | 25.0% |
| ! | TATTCCTAGATATGAGAAAA+TGG | + | chr1_1:76789041-76789060 | None:intergenic | 25.0% |
| ! | TTCCACAGATTTCAAATAAT+AGG | + | chr1_1:76789075-76789094 | None:intergenic | 25.0% |
| ! | TTCATGTTTGTTCTTTAGTT+TGG | - | chr1_1:76789267-76789286 | Msa0045090:intron | 25.0% |
| !! | AGATTGATACAAGAGTATAA+TGG | + | chr1_1:76789424-76789443 | None:intergenic | 25.0% |
| ! | TTGAGATTCATATAACCTAA+GGG | + | chr1_1:76789511-76789530 | None:intergenic | 25.0% |
| ! | ATTGAGATTCATATAACCTA+AGG | + | chr1_1:76789512-76789531 | None:intergenic | 25.0% |
| ! | TGATAGTTTACATACTGAAT+GGG | - | chr1_1:76789535-76789554 | Msa0045090:intron | 25.0% |
| !! | TATGCATAATATTTTGTCAC+AGG | - | chr1_1:76789559-76789578 | Msa0045090:intron | 25.0% |
| !! | ATGCATAATATTTTGTCACA+GGG | - | chr1_1:76789560-76789579 | Msa0045090:intron | 25.0% |
| !!! | AATTCCTGCTAAATTTTGAT+GGG | - | chr1_1:76789609-76789628 | Msa0045090:intron | 25.0% |
| ! | TTACACATAGAATATACAGA+GGG | + | chr1_1:76789742-76789761 | None:intergenic | 25.0% |
| ! | ATTACACATAGAATATACAG+AGG | + | chr1_1:76789743-76789762 | None:intergenic | 25.0% |
| ! | GTCTAAACGAAAATATCATA+AGG | + | chr1_1:76789874-76789893 | None:intergenic | 25.0% |
| ! | ATCGAATCTAATCTATCAAA+AGG | + | chr1_1:76790043-76790062 | None:intergenic | 25.0% |
| ! | ATACTTAACAGTAAGACAAA+CGG | + | chr1_1:76790087-76790106 | None:intergenic | 25.0% |
| !! | CTACATAAATTTAAAGTAGG+CGG | - | chr1_1:76790143-76790162 | Msa0045090:intron | 25.0% |
| ! | AAAGAAATTCTTGTAGATGA+AGG | + | chr1_1:76790578-76790597 | None:intergenic | 25.0% |
| !! | TATGATTTTTCTCTGAACTT+TGG | - | chr1_1:76790682-76790701 | Msa0045090:intron | 25.0% |
| ! | TCTTTGACTAGTAAATTGAA+AGG | + | chr1_1:76790737-76790756 | None:intergenic | 25.0% |
| ! | TCTTTATTACTGTTTGTTCT+TGG | - | chr1_1:76790771-76790790 | Msa0045090:intron | 25.0% |
| ! | AACAAGTTGTTTAATAGCAT+TGG | - | chr1_1:76791047-76791066 | Msa0045090:intron | 25.0% |
| !! | TCAAGGTGCAATTTTGAAAA+TGG | - | chr1_1:76787583-76787602 | Msa0045090:intron | 30.0% |
| AAATATTACTCTGTTCTGTC+TGG | + | chr1_1:76787616-76787635 | None:intergenic | 30.0% | |
| !! | GATCTTTTTGGCAAAATTAG+GGG | + | chr1_1:76787646-76787665 | None:intergenic | 30.0% |
| ! | ATCTTTTCTTCACCTATCTT+GGG | + | chr1_1:76787692-76787711 | None:intergenic | 30.0% |
| ! | AATCTTTTCTTCACCTATCT+TGG | + | chr1_1:76787693-76787712 | None:intergenic | 30.0% |
| CTCAAAAAGAAAACGAATAG+TGG | + | chr1_1:76787755-76787774 | None:intergenic | 30.0% | |
| ! | TCTCTCGATGCATTTTTATT+TGG | - | chr1_1:76788076-76788095 | Msa0045090:intron | 30.0% |
| AAAAGCAAAGTTGAAGAACA+AGG | + | chr1_1:76788141-76788160 | None:intergenic | 30.0% | |
| CTTAGAGAATTAGAGATTGT+TGG | - | chr1_1:76788164-76788183 | Msa0045090:intron | 30.0% | |
| CAGTATTTGAGTAACATAAC+CGG | + | chr1_1:76788651-76788670 | None:intergenic | 30.0% | |
| !!! | ACATTTTTTCTGTCTCATTC+TGG | - | chr1_1:76788784-76788803 | Msa0045090:intron | 30.0% |
| TGTATGACGTAAATTGATGT+TGG | - | chr1_1:76788868-76788887 | Msa0045090:intron | 30.0% | |
| !! | GATGTTGGTAATTTACACAA+CGG | - | chr1_1:76788883-76788902 | Msa0045090:intron | 30.0% |
| ATGAGAAAATGGGAGAAAAA+AGG | + | chr1_1:76789030-76789049 | None:intergenic | 30.0% | |
| ! | GTCCTATTATTTGAAATCTG+TGG | - | chr1_1:76789070-76789089 | Msa0045090:intron | 30.0% |
| !!! | ATAGACTTTTAGCTCATCTT+GGG | - | chr1_1:76789212-76789231 | Msa0045090:intron | 30.0% |
| !! | ATGTTTGTTCTTTAGTTTGG+TGG | - | chr1_1:76789270-76789289 | Msa0045090:intron | 30.0% |
| ! | TAAACTAGGCTTTGTAAACA+TGG | + | chr1_1:76789340-76789359 | None:intergenic | 30.0% |
| CTGATAGTTTACATACTGAA+TGG | - | chr1_1:76789534-76789553 | Msa0045090:intron | 30.0% | |
| GATAGTTTACATACTGAATG+GGG | - | chr1_1:76789536-76789555 | Msa0045090:intron | 30.0% | |
| ! | TTTGTCACAGGGATTTTAAA+TGG | - | chr1_1:76789571-76789590 | Msa0045090:intron | 30.0% |
| ! | TTGTCACAGGGATTTTAAAT+GGG | - | chr1_1:76789572-76789591 | Msa0045090:intron | 30.0% |
| CAAAATTTAGCAGGAATTGA+GGG | + | chr1_1:76789607-76789626 | None:intergenic | 30.0% | |
| TCAAAATTTAGCAGGAATTG+AGG | + | chr1_1:76789608-76789627 | None:intergenic | 30.0% | |
| ! | CAATTCCTGCTAAATTTTGA+TGG | - | chr1_1:76789608-76789627 | Msa0045090:intron | 30.0% |
| !! | ATTCCTGCTAAATTTTGATG+GGG | - | chr1_1:76789610-76789629 | Msa0045090:intron | 30.0% |
| TACACATAGAATATACAGAG+GGG | + | chr1_1:76789741-76789760 | None:intergenic | 30.0% | |
| ATGAAATCACTTGCAAAAGA+TGG | + | chr1_1:76789948-76789967 | None:intergenic | 30.0% | |
| ! | CTTTTGCAAGTGATTTCATA+CGG | - | chr1_1:76789949-76789968 | Msa0045090:intron | 30.0% |
| !! | GTGGTTATCATCTTTAGTTT+TGG | + | chr1_1:76790277-76790296 | None:intergenic | 30.0% |
| GTCATCATTATCTTATGTGA+TGG | - | chr1_1:76790326-76790345 | Msa0045090:intron | 30.0% | |
| ! | ATTTCTTTTCCTATGCAACT+AGG | - | chr1_1:76790590-76790609 | Msa0045090:intron | 30.0% |
| TGTAAATCAATTGTTGTACC+AGG | - | chr1_1:76790613-76790632 | Msa0045090:intron | 30.0% | |
| GTAAATCAATTGTTGTACCA+GGG | - | chr1_1:76790614-76790633 | Msa0045090:intron | 30.0% | |
| ! | GCACATTTTCTATAACTTCT+TGG | + | chr1_1:76790896-76790915 | None:intergenic | 30.0% |
| !! | AATTCTAGAGTGATATACCA+AGG | + | chr1_1:76790932-76790951 | None:intergenic | 30.0% |
| ! | TTATTTCAAGTAGTTGGACT+AGG | - | chr1_1:76791079-76791098 | Msa0045090:intron | 30.0% |
| TCAAAATTGCACCTTGAATG+CGG | + | chr1_1:76787580-76787599 | None:intergenic | 35.0% | |
| ! | CGCTTGTTTCAAGATCTTTT+TGG | + | chr1_1:76787658-76787677 | None:intergenic | 35.0% |
| AAACGAATAGTGGTTCATTC+TGG | + | chr1_1:76787745-76787764 | None:intergenic | 35.0% | |
| !!! | GGTTTTGAGGGTTAATAAGA+TGG | + | chr1_1:76787810-76787829 | None:intergenic | 35.0% |
| GAACTGTAGAAAAACAGTAC+CGG | + | chr1_1:76787993-76788012 | None:intergenic | 35.0% | |
| TCGAGAGAAGAAACGAAAAA+GGG | + | chr1_1:76788064-76788083 | None:intergenic | 35.0% | |
| ATCGAGAGAAGAAACGAAAA+AGG | + | chr1_1:76788065-76788084 | None:intergenic | 35.0% | |
| AGAGAATTAGAGATTGTTGG+TGG | - | chr1_1:76788167-76788186 | Msa0045090:intron | 35.0% | |
| AACATTTAGCAAACAAGCAC+CGG | + | chr1_1:76788280-76788299 | None:intergenic | 35.0% | |
| AAGCTATCATGTAGAACTTG+TGG | - | chr1_1:76788529-76788548 | Msa0045090:intron | 35.0% | |
| !! | AGAAGCATTTGAATTTCGCA+GGG | + | chr1_1:76788623-76788642 | None:intergenic | 35.0% |
| !! | AAGAAGCATTTGAATTTCGC+AGG | + | chr1_1:76788624-76788643 | None:intergenic | 35.0% |
| ATTCAAATGCTTCTTCTCTC+CGG | - | chr1_1:76788629-76788648 | Msa0045090:intron | 35.0% | |
| ATTGTATGCTAGACACTTAG+GGG | + | chr1_1:76788699-76788718 | None:intergenic | 35.0% | |
| GATTGTATGCTAGACACTTA+GGG | + | chr1_1:76788700-76788719 | None:intergenic | 35.0% | |
| AGATTGTATGCTAGACACTT+AGG | + | chr1_1:76788701-76788720 | None:intergenic | 35.0% | |
| CGGTGAAGTCTAAGAAATAA+AGG | + | chr1_1:76788726-76788745 | None:intergenic | 35.0% | |
| !! | AGACTTCACCGATTCATATA+TGG | - | chr1_1:76788735-76788754 | Msa0045090:intron | 35.0% |
| !! | GTTAAGGAAATTTTGGTCTC+TGG | - | chr1_1:76788920-76788939 | Msa0045090:intron | 35.0% |
| TAGATATCAGTTGCTAAAGG+TGG | - | chr1_1:76789004-76789023 | Msa0045090:intron | 35.0% | |
| ! | TCTCCCATTTTCTCATATCT+AGG | - | chr1_1:76789034-76789053 | Msa0045090:intron | 35.0% |
| !!! | TGGGGCATATTCGTTTTTTT+GGG | + | chr1_1:76789131-76789150 | None:intergenic | 35.0% |
| !!! | ATGGGGCATATTCGTTTTTT+TGG | + | chr1_1:76789132-76789151 | None:intergenic | 35.0% |
| ! | TGATGATAATTTGTGGCGAA+AGG | + | chr1_1:76789161-76789180 | None:intergenic | 35.0% |
| !! | GCTGGTTTGATGATAATTTG+TGG | + | chr1_1:76789168-76789187 | None:intergenic | 35.0% |
| TCTATCCATGGTAAATGAGT+GGG | + | chr1_1:76789197-76789216 | None:intergenic | 35.0% | |
| ATGAGCTAAAAGTCTATCCA+TGG | + | chr1_1:76789209-76789228 | None:intergenic | 35.0% | |
| !!! | GATAGACTTTTAGCTCATCT+TGG | - | chr1_1:76789211-76789230 | Msa0045090:intron | 35.0% |
| !! | AGGCTTTGTAAACATGGTTT+TGG | + | chr1_1:76789334-76789353 | None:intergenic | 35.0% |
| ACAAAGCCTAGTTTACAACT+TGG | - | chr1_1:76789345-76789364 | Msa0045090:intron | 35.0% | |
| CAAAGCCTAGTTTACAACTT+GGG | - | chr1_1:76789346-76789365 | Msa0045090:intron | 35.0% | |
| TAGATCCCAAGTTGTAAACT+AGG | + | chr1_1:76789354-76789373 | None:intergenic | 35.0% | |
| GGGAAAGTGAAAGAGAAATA+GGG | + | chr1_1:76789491-76789510 | None:intergenic | 35.0% | |
| AGGGAAAGTGAAAGAGAAAT+AGG | + | chr1_1:76789492-76789511 | None:intergenic | 35.0% | |
| TTTCTCTTTCACTTTCCCTT+AGG | - | chr1_1:76789493-76789512 | Msa0045090:intron | 35.0% | |
| TCAACAGTTGCTAAAGTAAG+AGG | - | chr1_1:76790506-76790525 | Msa0045090:intron | 35.0% | |
| CAACAGTTGCTAAAGTAAGA+GGG | - | chr1_1:76790507-76790526 | Msa0045090:intron | 35.0% | |
| TGATTTACACCTAGTTGCAT+AGG | + | chr1_1:76790602-76790621 | None:intergenic | 35.0% | |
| ! | TTTTGTTGATACAGAGAGCT+TGG | - | chr1_1:76790838-76790857 | Msa0045090:intron | 35.0% |
| GTGCAACATACATTTAACCT+TGG | - | chr1_1:76790912-76790931 | Msa0045090:intron | 35.0% | |
| AAGGTTAAATGTATGCAGCT+CGG | + | chr1_1:76790970-76790989 | None:intergenic | 35.0% | |
| AGCTGCATACATTTAACCTT+TGG | - | chr1_1:76790970-76790989 | Msa0045090:intron | 35.0% | |
| !! | ACTCTAGAGTGATATACCAA+AGG | + | chr1_1:76790989-76791008 | None:intergenic | 35.0% |
| TAATTTCATAGCACGTAGCT+GGG | + | chr1_1:76791028-76791047 | None:intergenic | 35.0% | |
| TTAATTTCATAGCACGTAGC+TGG | + | chr1_1:76791029-76791048 | None:intergenic | 35.0% | |
| ! | TGGACTAGGTGTAAATCTAT+TGG | - | chr1_1:76791093-76791112 | Msa0045090:intron | 35.0% |
| GGACTAGGTGTAAATCTATT+GGG | - | chr1_1:76791094-76791113 | Msa0045090:intron | 35.0% | |
| GATCTTCCTAAACCCAAGAT+AGG | - | chr1_1:76787677-76787696 | Msa0045090:intron | 40.0% | |
| TCTTCACCTATCTTGGGTTT+AGG | + | chr1_1:76787686-76787705 | None:intergenic | 40.0% | |
| TGAGACGTTAACCTTTAACC+TGG | - | chr1_1:76787771-76787790 | Msa0045090:intron | 40.0% | |
| ! | TTAGTTGGTGTCCAGGTTAA+AGG | + | chr1_1:76787785-76787804 | None:intergenic | 40.0% |
| TCGATTGAGAAGAAAACGAC+GGG | + | chr1_1:76787946-76787965 | None:intergenic | 40.0% | |
| CTCGATTGAGAAGAAAACGA+CGG | + | chr1_1:76787947-76787966 | None:intergenic | 40.0% | |
| !!! | TTGTTTTGAATAGCTCCCTC+CGG | - | chr1_1:76788258-76788277 | Msa0045090:intron | 40.0% |
| !! | TGCCACATTTGAGCTGATTT+TGG | - | chr1_1:76788414-76788433 | Msa0045090:CDS | 40.0% |
| CACCAAAATCAGCTCAAATG+TGG | + | chr1_1:76788419-76788438 | None:intergenic | 40.0% | |
| CTGGATTGTAACATGAGGAA+AGG | - | chr1_1:76788939-76788958 | Msa0045090:intron | 40.0% | |
| !! | GAGGAAAGGAGAAGCATTAT+AGG | - | chr1_1:76788953-76788972 | Msa0045090:intron | 40.0% |
| !!! | GGCATATTCGTTTTTTTGGG+TGG | + | chr1_1:76789128-76789147 | None:intergenic | 40.0% |
| ! | GATAATTTGTGGCGAAAGGT+TGG | + | chr1_1:76789157-76789176 | None:intergenic | 40.0% |
| GTCTATCCATGGTAAATGAG+TGG | + | chr1_1:76789198-76789217 | None:intergenic | 40.0% | |
| ATGCCCCATCAAAATTTAGC+AGG | + | chr1_1:76789616-76789635 | None:intergenic | 40.0% | |
| !! | CTAAATTTTGATGGGGCATC+TGG | - | chr1_1:76789617-76789636 | Msa0045090:intron | 40.0% |
| CTTCATGAAGCAAGAGTAAG+TGG | + | chr1_1:76789708-76789727 | None:intergenic | 40.0% | |
| TTGCTTCATGAAGCCTTCTT+TGG | - | chr1_1:76789715-76789734 | Msa0045090:intron | 40.0% | |
| TCATAAGGGTGAGCACAAAA+AGG | + | chr1_1:76789859-76789878 | None:intergenic | 40.0% | |
| ACTTGCAAAAGATGGAGACA+GGG | + | chr1_1:76789940-76789959 | None:intergenic | 40.0% | |
| ! | AGCTAGAGCATTAGACAATG+AGG | + | chr1_1:76790451-76790470 | None:intergenic | 40.0% |
| GTTGCTAAAGTAAGAGGGTT+TGG | - | chr1_1:76790512-76790531 | Msa0045090:intron | 40.0% | |
| TAGTCAAAGAAGACAGCGTT+TGG | - | chr1_1:76790747-76790766 | Msa0045090:intron | 40.0% | |
| ATACAAACTATCGGGGTGTG+CGG | + | chr1_1:76787506-76787525 | None:intergenic | 45.0% | |
| CTTTCACTCATCCGCATTCA+AGG | - | chr1_1:76787566-76787585 | Msa0045090:intron | 45.0% | |
| ACTCTGTTCTGTCTGGTATG+TGG | + | chr1_1:76787609-76787628 | None:intergenic | 45.0% | |
| !!! | GATGGTTTTAGTTGGTGTCC+AGG | + | chr1_1:76787792-76787811 | None:intergenic | 45.0% |
| !!! | ACGGTTTTTGAGGTCTTGGA+GGG | + | chr1_1:76787899-76787918 | None:intergenic | 45.0% |
| ! | GAAGAAGACGACGGTTTTTG+AGG | + | chr1_1:76787909-76787928 | None:intergenic | 45.0% |
| !! | GAGGTTGATGAAGAAGACGA+CGG | + | chr1_1:76787918-76787937 | None:intergenic | 45.0% |
| AAGAAAACGACGGGATTGAG+AGG | + | chr1_1:76787937-76787956 | None:intergenic | 45.0% | |
| TGTCACGTCTTCTGATTCTC+CGG | - | chr1_1:76787971-76787990 | Msa0045090:intron | 45.0% | |
| ACTGAAGACAGTAGCCATCA+GGG | + | chr1_1:76788199-76788218 | None:intergenic | 45.0% | |
| AACTGAAGACAGTAGCCATC+AGG | + | chr1_1:76788200-76788219 | None:intergenic | 45.0% | |
| !! | TTTAGCAAACAAGCACCGGA+GGG | + | chr1_1:76788276-76788295 | None:intergenic | 45.0% |
| !! | ATTTAGCAAACAAGCACCGG+AGG | + | chr1_1:76788277-76788296 | None:intergenic | 45.0% |
| !! | TCGATTTGGGGCTTGTGTTA+TGG | + | chr1_1:76788483-76788502 | None:intergenic | 45.0% |
| GGTCTCTGGATTGTAACATG+AGG | - | chr1_1:76788934-76788953 | Msa0045090:intron | 45.0% | |
| TCCATGGTAAATGAGTGGGT+GGG | + | chr1_1:76789193-76789212 | None:intergenic | 45.0% | |
| ATCCATGGTAAATGAGTGGG+TGG | + | chr1_1:76789194-76789213 | None:intergenic | 45.0% | |
| !! | AATTTTGATGGGGCATCTGG+TGG | - | chr1_1:76789620-76789639 | Msa0045090:intron | 45.0% |
| !! | ATTTTGATGGGGCATCTGGT+GGG | - | chr1_1:76789621-76789640 | Msa0045090:intron | 45.0% |
| ATATACAGAGGGGCCAAAGA+AGG | + | chr1_1:76789731-76789750 | None:intergenic | 45.0% | |
| CACTTGCAAAAGATGGAGAC+AGG | + | chr1_1:76789941-76789960 | None:intergenic | 45.0% | |
| ! | CCTTCATTAGCTCTTCAAGC+AGG | + | chr1_1:76789995-76790014 | None:intergenic | 45.0% |
| CCTGCTTGAAGAGCTAATGA+AGG | - | chr1_1:76789992-76790011 | Msa0045090:intron | 45.0% | |
| GAAGAGCTAATGAAGGTGAC+TGG | - | chr1_1:76789999-76790018 | Msa0045090:intron | 45.0% | |
| ATATAAACCCACACTCCCAC+AGG | + | chr1_1:76790192-76790211 | None:intergenic | 45.0% | |
| ATTCGCATTGCTTCAAACCC+TGG | + | chr1_1:76790634-76790653 | None:intergenic | 45.0% | |
| CCAAAATAAGCACGACCAAG+AGG | + | chr1_1:76790870-76790889 | None:intergenic | 45.0% | |
| ! | CCTCTTGGTCGTGCTTATTT+TGG | - | chr1_1:76790867-76790886 | Msa0045090:intron | 45.0% |
| !!! | CTTGGTCGTGCTTATTTTGG+TGG | - | chr1_1:76790870-76790889 | Msa0045090:intron | 45.0% |
| !! | AAAATTAAAAAATAAACAAA+AGG | + | chr1_1:76788832-76788851 | None:intergenic | 5.0% |
| TACAAACTATCGGGGTGTGC+GGG | + | chr1_1:76787505-76787524 | None:intergenic | 50.0% | |
| !!! | AGCGGGTTCAGTGGTTTTGA+GGG | + | chr1_1:76787822-76787841 | None:intergenic | 50.0% |
| ! | GTGATGAGTGGGTTTCACGA+CGG | + | chr1_1:76787858-76787877 | None:intergenic | 50.0% |
| !! | GCAACTCTGAGGTGATGAGT+GGG | + | chr1_1:76787869-76787888 | None:intergenic | 50.0% |
| !! | AGCAACTCTGAGGTGATGAG+TGG | + | chr1_1:76787870-76787889 | None:intergenic | 50.0% |
| !!! | GACGGTTTTTGAGGTCTTGG+AGG | + | chr1_1:76787900-76787919 | None:intergenic | 50.0% |
| !!! | GACGACGGTTTTTGAGGTCT+TGG | + | chr1_1:76787903-76787922 | None:intergenic | 50.0% |
| !! | GTTGGTGGTATCATCCCTGA+TGG | - | chr1_1:76788182-76788201 | Msa0045090:intron | 50.0% |
| TGTGGCGAAAGGTTGGAGAT+GGG | + | chr1_1:76789150-76789169 | None:intergenic | 50.0% | |
| TTGTGGCGAAAGGTTGGAGA+TGG | + | chr1_1:76789151-76789170 | None:intergenic | 50.0% | |
| CCATGGTAAATGAGTGGGTG+GGG | + | chr1_1:76789192-76789211 | None:intergenic | 50.0% | |
| ! | ATTAGCTCTTCAAGCAGGCG+AGG | + | chr1_1:76789990-76790009 | None:intergenic | 50.0% |
| TTGTGGCAAGCTCTTCCTGT+GGG | - | chr1_1:76790174-76790193 | Msa0045090:intron | 50.0% | |
| !! | AGAGCTTGGTGTAGTCCTCT+TGG | - | chr1_1:76790852-76790871 | Msa0045090:intron | 50.0% |
| !! | GAGCGGGTTCAGTGGTTTTG+AGG | + | chr1_1:76787823-76787842 | None:intergenic | 55.0% |
| ! | ATGAGTGGGTTTCACGACGG+CGG | + | chr1_1:76787855-76787874 | None:intergenic | 55.0% |
| AGGGTTTCGCAGCAACTCTG+AGG | + | chr1_1:76787880-76787899 | None:intergenic | 55.0% | |
| GTGGCGAAAGGTTGGAGATG+GGG | + | chr1_1:76789149-76789168 | None:intergenic | 55.0% | |
| TAAATGAGTGGGTGGGGAGC+TGG | + | chr1_1:76789186-76789205 | None:intergenic | 55.0% | |
| CCCCACCCACTCATTTACCA+TGG | - | chr1_1:76789189-76789208 | Msa0045090:intron | 55.0% | |
| AGTAGGCGGAACTGCACTTG+TGG | - | chr1_1:76790157-76790176 | Msa0045090:intron | 55.0% | |
| CTTGTGGCAAGCTCTTCCTG+TGG | - | chr1_1:76790173-76790192 | Msa0045090:intron | 55.0% | |
| AAGCTCTTCCTGTGGGAGTG+TGG | - | chr1_1:76790181-76790200 | Msa0045090:intron | 55.0% | |
| ! | AGCTCTTCCTGTGGGAGTGT+GGG | - | chr1_1:76790182-76790201 | Msa0045090:intron | 55.0% |
| ATGCAGCTCGGAACACGTTC+AGG | + | chr1_1:76790958-76790977 | None:intergenic | 55.0% | |
| ACTATCGGGGTGTGCGGGTA+TGG | + | chr1_1:76787500-76787519 | None:intergenic | 60.0% | |
| TCGGGGTGTGCGGGTATGGT+GGG | + | chr1_1:76787496-76787515 | None:intergenic | 65.0% | |
| ATCGGGGTGTGCGGGTATGG+TGG | + | chr1_1:76787497-76787516 | None:intergenic | 65.0% | |
| ! | GGGTGGATGAGCGGGTTCAG+TGG | + | chr1_1:76787831-76787850 | None:intergenic | 65.0% |
| GTGGGTTTCACGACGGCGGT+GGG | + | chr1_1:76787851-76787870 | None:intergenic | 65.0% | |
| ! | AGTGGGTTTCACGACGGCGG+TGG | + | chr1_1:76787852-76787871 | None:intergenic | 65.0% |
| GGGGTGTGCGGGTATGGTGG+GGG | + | chr1_1:76787494-76787513 | None:intergenic | 70.0% | |
| CGGGGTGTGCGGGTATGGTG+GGG | + | chr1_1:76787495-76787514 | None:intergenic | 70.0% | |
| ACGGCGGTGGGTGGATGAGC+GGG | + | chr1_1:76787839-76787858 | None:intergenic | 70.0% | |
| GACGGCGGTGGGTGGATGAG+CGG | + | chr1_1:76787840-76787859 | None:intergenic | 70.0% | |
| GGTTTCACGACGGCGGTGGG+TGG | + | chr1_1:76787848-76787867 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 76787219 | 76791162 | 76787219 | ID=Msa0045090;Name=Msa0045090 |
| chr1_1 | mRNA | 76787219 | 76791162 | 76787219 | ID=Msa0045090-mRNA-1;Parent=Msa0045090;Name=Msa0045090-mRNA-1;_AED=0.34;_eAED=0.34;_QI=0|0.25|0.2|0.6|0|0.2|5|215|110 |
| chr1_1 | exon | 76787219 | 76787529 | 76787219 | ID=Msa0045090-mRNA-1:exon:26259;Parent=Msa0045090-mRNA-1 |
| chr1_1 | exon | 76788368 | 76788481 | 76788368 | ID=Msa0045090-mRNA-1:exon:26258;Parent=Msa0045090-mRNA-1 |
| chr1_1 | exon | 76790389 | 76790498 | 76790389 | ID=Msa0045090-mRNA-1:exon:26257;Parent=Msa0045090-mRNA-1 |
| chr1_1 | exon | 76791007 | 76791014 | 76791007 | ID=Msa0045090-mRNA-1:exon:26256;Parent=Msa0045090-mRNA-1 |
| chr1_1 | exon | 76791158 | 76791162 | 76791158 | ID=Msa0045090-mRNA-1:exon:26255;Parent=Msa0045090-mRNA-1 |
| chr1_1 | CDS | 76791158 | 76791162 | 76791158 | ID=Msa0045090-mRNA-1:cds;Parent=Msa0045090-mRNA-1 |
| chr1_1 | CDS | 76791007 | 76791014 | 76791007 | ID=Msa0045090-mRNA-1:cds;Parent=Msa0045090-mRNA-1 |
| chr1_1 | CDS | 76790389 | 76790498 | 76790389 | ID=Msa0045090-mRNA-1:cds;Parent=Msa0045090-mRNA-1 |
| chr1_1 | CDS | 76788368 | 76788481 | 76788368 | ID=Msa0045090-mRNA-1:cds;Parent=Msa0045090-mRNA-1 |
| chr1_1 | CDS | 76787434 | 76787529 | 76787434 | ID=Msa0045090-mRNA-1:cds;Parent=Msa0045090-mRNA-1 |
| chr1_1 | three_prime_UTR | 76787219 | 76787433 | 76787219 | ID=Msa0045090-mRNA-1:three_prime_utr;Parent=Msa0045090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
