AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0393520

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0393520 MtrunA17_Chr3g0078971 98.428 509 8 0 1 509 1 509 0.0 1013
Msa0393520 MtrunA17_Chr3g0078991 76.289 485 114 1 16 499 16 500 0.0 765
Msa0393520 MtrunA17_Chr4g0065311 59.213 483 194 3 15 497 13 492 0.0 600
Msa0393520 MtrunA17_Chr5g0394341 57.026 491 207 4 15 502 14 503 0.0 597
Msa0393520 MtrunA17_Chr5g0437021 59.879 496 193 4 9 501 9 501 0.0 592
Msa0393520 MtrunA17_Chr5g0445601 58.230 486 200 3 15 500 19 501 0.0 589
Msa0393520 MtrunA17_Chr7g0257631 59.834 483 191 3 15 497 53 532 0.0 589
Msa0393520 MtrunA17_Chr1g0164871 58.097 494 201 4 13 503 13 503 0.0 579
Msa0393520 MtrunA17_Chr1g0164851 58.571 490 197 4 13 499 13 499 0.0 578
Msa0393520 MtrunA17_Chr4g0048411 59.476 496 195 3 13 503 13 507 0.0 574
Msa0393520 MtrunA17_Chr4g0065324 55.761 486 212 3 15 500 21 503 0.0 572
Msa0393520 MtrunA17_Chr5g0420841 56.907 485 204 3 15 495 13 496 0.0 564
Msa0393520 MtrunA17_Chr5g0417611 57.515 499 205 4 8 500 6 503 0.0 557
Msa0393520 MtrunA17_Chr1g0205691 56.200 500 212 6 11 505 10 507 0.0 552
Msa0393520 MtrunA17_Chr3g0128081 56.823 491 207 3 11 497 10 499 0.0 548
Msa0393520 MtrunA17_Chr1g0205681 53.099 484 223 4 15 495 15 497 0.0 546
Msa0393520 MtrunA17_Chr1g0205671 53.002 483 224 3 15 495 15 496 0.0 541
Msa0393520 MtrunA17_Chr3g0115741 52.429 494 226 7 17 505 20 509 0.0 540
Msa0393520 MtrunA17_Chr3g0115751 52.096 501 232 6 1 497 6 502 0.0 538
Msa0393520 MtrunA17_Chr3g0115721 51.594 502 235 6 8 505 8 505 0.0 536
Msa0393520 MtrunA17_Chr8g0390261 53.704 486 222 3 15 499 18 501 0.0 535
Msa0393520 MtrunA17_Chr4g0048051 56.471 510 213 3 1 502 1 509 0.0 535
Msa0393520 MtrunA17_Chr3g0115781 52.535 493 225 7 18 505 20 508 0.0 531
Msa0393520 MtrunA17_Chr6g0486681 52.738 493 230 3 15 506 18 508 0.0 529
Msa0393520 MtrunA17_Chr6g0486671 52.738 493 230 3 15 506 18 508 0.0 529
Msa0393520 MtrunA17_Chr3g0115711 51.509 497 228 6 16 509 16 502 0.0 524
Msa0393520 MtrunA17_Chr3g0085971 53.722 497 224 4 15 507 13 507 0.0 517
Msa0393520 MtrunA17_Chr8g0390141 51.703 499 235 4 15 509 18 514 4.56e-177 508
Msa0393520 MtrunA17_Chr3g0128171 55.432 451 195 3 50 495 1 450 5.36e-172 493
Msa0393520 MtrunA17_Chr3g0115731 47.036 506 223 10 8 502 8 479 7.32e-159 460
Msa0393520 MtrunA17_Chr3g0078791 52.968 438 179 4 68 502 16 429 6.46e-158 456
Msa0393520 MtrunA17_Chr4g0065351 54.386 342 154 2 161 502 1 340 1.23e-136 399
Msa0393520 MtrunA17_Chr3g0115771 37.261 314 149 8 151 461 5 273 3.79e-62 204
Msa0393520 MtrunA17_Chr6g0485661 29.194 459 293 10 28 476 63 499 6.01e-57 197
Msa0393520 MtrunA17_Chr4g0034681 27.054 499 319 10 27 502 34 510 6.01e-55 192
Msa0393520 MtrunA17_Chr3g0144361 28.184 479 301 10 27 484 32 488 5.71e-54 189
Msa0393520 MtrunA17_Chr8g0390521 26.367 512 336 10 10 505 3 489 7.42e-53 186
Msa0393520 MtrunA17_Chr8g0373531 29.124 491 303 12 28 496 24 491 8.51e-52 183
Msa0393520 MtrunA17_Chr4g0021771 26.205 477 318 9 23 490 55 506 1.23e-50 181
Msa0393520 MtrunA17_Chr4g0036021 26.283 487 317 10 27 495 31 493 4.39e-50 179
Msa0393520 MtrunA17_Chr5g0432581 27.530 494 315 10 18 490 14 485 1.69e-49 177
Msa0393520 MtrunA17_Chr4g0065341 55.405 148 63 2 7 152 9 155 3.64e-48 164
Msa0393520 MtrunA17_Chr2g0282031 27.941 476 305 12 24 488 53 501 4.77e-48 174
Msa0393520 MtrunA17_Chr1g0213611 27.403 489 315 12 20 495 75 536 1.21e-46 170
Msa0393520 MtrunA17_Chr4g0039651 28.661 478 298 10 24 484 46 497 4.58e-46 168
Msa0393520 MtrunA17_Chr7g0214451 26.598 485 320 12 20 495 30 487 3.96e-45 165
Msa0393520 MtrunA17_Chr1g0213631 28.354 395 269 9 103 490 48 435 5.20e-44 161
Msa0393520 MtrunA17_Chr5g0446681 57.812 128 54 0 375 502 157 284 1.72e-41 150
Msa0393520 MtrunA17_Chr5g0446681 43.646 181 66 2 13 193 12 156 8.66e-35 132
Msa0393520 MtrunA17_Chr7g0250881 25.780 481 323 11 6 485 53 500 1.42e-40 153
Msa0393520 MtrunA17_Chr6g0457781 26.763 482 317 10 6 485 93 540 3.50e-40 152
Msa0393520 MtrunA17_Chr5g0403831 27.111 450 294 11 65 490 59 498 1.52e-39 150
Msa0393520 MtrunA17_Chr4g0066581 27.292 480 312 12 8 484 38 483 5.50e-39 148
Msa0393520 MtrunA17_Chr4g0032021 27.869 488 294 11 23 484 96 551 5.56e-39 149
Msa0393520 MtrunA17_Chr8g0373181 26.216 473 301 11 23 484 47 482 8.68e-37 142
Msa0393520 MtrunA17_Chr7g0273281 26.316 494 309 11 8 484 37 492 4.12e-36 140
Msa0393520 MtrunA17_Chr1g0155221 25.470 479 317 10 18 488 43 489 1.70e-34 135
Msa0393520 MtrunA17_Chr2g0286721 26.033 484 313 12 8 484 35 480 1.80e-34 135
Msa0393520 MtrunA17_Chr7g0228781 40.984 183 72 3 6 152 21 203 4.82e-34 127
Msa0393520 MtrunA17_Chr2g0303701 31.268 339 203 9 20 351 23 338 1.05e-33 134
Msa0393520 MtrunA17_Chr2g0303731 31.792 346 199 12 20 353 23 343 7.16e-33 132
Msa0393520 MtrunA17_Chr8g0376631 31.105 344 204 11 20 353 23 343 1.57e-32 130
Msa0393520 MtrunA17_Chr4g0004821 26.316 399 266 8 95 484 90 469 6.50e-32 128
Msa0393520 MtrunA17_Chr8g0373191 25.696 467 291 11 23 484 39 454 9.29e-32 127
Msa0393520 MtrunA17_Chr2g0290181 28.232 379 234 10 20 381 24 381 3.72e-31 127
Msa0393520 MtrunA17_Chr2g0290181 32.075 106 71 1 387 491 455 560 3.48e-11 65.9
Msa0393520 MtrunA17_Chr7g0259471 25.581 430 294 9 62 484 60 470 2.35e-30 123
Msa0393520 MtrunA17_Chr8g0376611 32.296 257 162 6 103 351 22 274 1.04e-28 119
Msa0393520 MtrunA17_Chr8g0376601 27.616 344 216 10 18 351 21 341 1.46e-28 119
Msa0393520 MtrunA17_Chr3g0119401 22.894 463 322 12 28 485 98 530 6.33e-28 117
Msa0393520 MtrunA17_Chr6g0486021 24.235 392 285 6 94 484 103 483 7.78e-28 116
Msa0393520 MtrunA17_Chr3g0115761 51.456 103 49 1 50 152 1 102 1.07e-27 107
Msa0393520 MtrunA17_Chr7g0259221 25.980 408 275 10 85 484 84 472 9.21e-26 110
Msa0393520 MtrunA17_Chr2g0290161 28.866 291 165 8 99 378 19 278 1.09e-23 103
Msa0393520 MtrunA17_Chr3g0121674 25.926 297 200 8 205 490 2 289 1.70e-22 97.8
Msa0393520 MtrunA17_Chr7g0273261 30.000 210 138 4 276 484 33 234 5.48e-19 86.7
Msa0393520 MtrunA17_Chr5g0434231 30.337 178 97 2 82 259 4 154 7.13e-19 83.6
Msa0393520 MtrunA17_Chr5g0407441 27.386 241 152 6 23 261 4 223 1.28e-16 83.2
Msa0393520 MtrunA17_Chr3g0146061 30.636 173 117 3 91 262 54 224 3.48e-16 81.6
Msa0393520 MtrunA17_Chr3g0144261 30.412 194 128 4 74 262 31 222 1.94e-15 79.3
Msa0393520 MtrunA17_Chr3g0144261 26.033 242 160 6 257 481 472 711 9.08e-11 64.7
Msa0393520 MtrunA17_Chr8g0370141 26.540 211 145 4 78 280 41 249 3.73e-14 74.3
Msa0393520 MtrunA17_Chr5g0419321 26.590 173 124 3 90 261 81 251 3.95e-14 75.1
Msa0393520 MtrunA17_Chr5g0404191 24.521 261 167 6 23 281 50 282 3.70e-13 70.1
Msa0393520 MtrunA17_Chr1g0211861 46.575 73 37 1 338 408 21 93 8.17e-13 65.1
Msa0393520 MtrunA17_Chr8g0370151 28.571 224 142 5 270 481 125 342 3.27e-12 68.2
Msa0393520 MtrunA17_Chr5g0434251 30.081 123 81 2 383 500 34 156 9.71e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0393520 AT5G61520.1 61.837 490 178 4 17 500 18 504 0.0 612
Msa0393520 AT5G26340.1 58.907 494 199 4 9 499 9 501 0.0 609
Msa0393520 AT3G19930.1 60.816 490 188 3 13 500 13 500 0.0 603
Msa0393520 AT3G19930.2 60.816 490 188 3 13 500 13 500 0.0 603
Msa0393520 AT4G02050.2 57.938 485 201 3 15 499 19 500 0.0 599
Msa0393520 AT4G02050.1 57.938 485 201 3 15 499 19 500 0.0 599
Msa0393520 AT1G11260.1 58.384 495 202 2 8 499 8 501 0.0 594
Msa0393520 AT3G19940.1 58.367 490 199 4 19 505 21 508 0.0 593
Msa0393520 AT1G50310.1 57.320 485 202 4 19 500 21 503 0.0 580
Msa0393520 AT5G23270.1 58.367 490 200 3 9 495 10 498 0.0 579
Msa0393520 AT5G61520.2 61.572 458 167 4 49 500 2 456 0.0 568
Msa0393520 AT4G21480.1 57.256 503 209 3 1 500 1 500 0.0 562
Msa0393520 AT1G77210.2 50.920 489 237 3 15 502 18 504 0.0 525
Msa0393520 AT1G77210.1 50.920 489 237 3 15 502 18 504 0.0 525
Msa0393520 AT1G34580.1 51.303 499 231 7 4 495 6 499 0.0 523
Msa0393520 AT5G26250.1 49.020 510 249 7 1 507 1 502 7.15e-172 494
Msa0393520 AT1G34580.2 50.993 453 211 6 50 495 1 449 6.16e-165 475
Msa0393520 AT1G07340.1 50.996 502 239 6 1 499 1 498 5.75e-164 474
Msa0393520 AT3G05960.1 47.023 487 254 4 10 495 8 491 5.33e-163 472
Msa0393520 AT1G50310.2 56.250 352 149 4 152 500 11 360 1.52e-143 417
Msa0393520 AT1G77210.3 50.284 352 172 3 152 502 6 355 2.14e-126 373
Msa0393520 AT4G36670.1 30.435 506 294 15 25 505 18 490 5.74e-59 203
Msa0393520 AT2G18480.1 29.263 475 285 12 37 487 36 483 3.28e-56 196
Msa0393520 AT3G18830.1 28.515 505 314 12 27 509 40 519 5.47e-56 196
Msa0393520 AT2G16120.1 28.893 488 308 8 27 495 30 497 5.05e-55 192
Msa0393520 AT2G16130.1 28.657 499 317 8 16 495 19 497 8.91e-55 192
Msa0393520 AT3G05165.3 26.582 474 307 11 16 484 23 460 4.56e-43 159
Msa0393520 AT3G05165.2 26.582 474 307 11 16 484 23 460 4.56e-43 159
Msa0393520 AT3G05165.1 26.582 474 307 11 16 484 23 460 4.56e-43 159
Msa0393520 AT5G17010.1 28.302 477 301 12 24 484 48 499 4.06e-42 157
Msa0393520 AT5G17010.3 28.302 477 301 12 24 484 48 499 4.06e-42 157
Msa0393520 AT5G17010.4 28.302 477 301 12 24 484 48 499 4.06e-42 157
Msa0393520 AT5G27360.1 25.413 484 320 8 6 484 18 465 4.95e-42 157
Msa0393520 AT5G27360.3 25.413 484 320 8 6 484 66 513 1.99e-41 156
Msa0393520 AT5G27350.1 26.763 482 316 11 6 484 14 461 2.68e-41 154
Msa0393520 AT2G20780.1 25.208 480 328 11 11 484 43 497 4.11e-41 155
Msa0393520 AT2G43330.1 25.157 477 319 9 27 492 35 484 1.58e-40 153
Msa0393520 AT5G59250.1 27.743 483 301 10 23 484 98 553 6.31e-40 152
Msa0393520 AT3G05150.1 26.186 485 316 10 6 484 18 466 1.93e-39 149
Msa0393520 AT3G05150.3 26.186 485 316 10 6 484 18 466 1.93e-39 149
Msa0393520 AT3G05150.2 26.186 485 316 10 6 484 18 466 2.14e-39 149
Msa0393520 AT2G20780.2 26.340 429 299 10 66 488 26 443 3.14e-39 149
Msa0393520 AT5G16150.2 24.896 482 324 11 6 484 93 539 2.15e-38 147
Msa0393520 AT5G16150.1 24.896 482 324 11 6 484 93 539 2.15e-38 147
Msa0393520 AT5G16150.3 24.896 482 324 11 6 484 93 539 2.15e-38 147
Msa0393520 AT1G08900.5 26.355 406 276 8 85 484 25 413 3.58e-38 145
Msa0393520 AT5G27360.2 27.500 360 240 5 130 484 18 361 3.72e-38 144
Msa0393520 AT5G27360.5 27.500 360 240 5 130 484 18 361 3.72e-38 144
Msa0393520 AT3G03090.1 27.719 469 300 10 31 484 55 499 5.06e-38 146
Msa0393520 AT1G08900.3 26.355 406 276 8 85 484 59 447 5.71e-38 145
Msa0393520 AT1G08900.1 26.355 406 276 8 85 484 67 455 6.42e-38 145
Msa0393520 AT1G08900.2 26.355 406 276 8 85 484 67 455 6.42e-38 145
Msa0393520 AT3G05160.1 25.212 472 316 10 16 484 14 451 7.00e-38 145
Msa0393520 AT1G08890.1 27.160 405 276 8 85 485 69 458 2.09e-37 144
Msa0393520 AT3G05160.3 26.238 404 283 7 83 484 12 402 2.63e-37 142
Msa0393520 AT3G05160.2 26.238 404 283 7 83 484 12 402 2.63e-37 142
Msa0393520 AT1G08930.1 25.474 475 307 11 18 484 53 488 3.20e-37 144
Msa0393520 AT1G08930.2 25.474 475 307 11 18 484 53 488 3.20e-37 144
Msa0393520 AT1G54730.2 26.767 467 289 9 29 484 38 462 4.03e-37 143
Msa0393520 AT1G75220.1 26.415 477 314 11 18 488 42 487 4.27e-37 143
Msa0393520 AT5G18840.1 27.479 484 303 14 16 490 37 481 1.41e-36 141
Msa0393520 AT3G05165.6 25.951 447 290 11 16 457 23 433 3.95e-36 140
Msa0393520 AT3G05155.1 25.212 472 316 11 16 485 20 456 7.31e-36 139
Msa0393520 AT3G05165.4 26.683 416 264 11 16 426 23 402 2.29e-35 138
Msa0393520 AT3G05165.5 26.683 416 264 11 16 426 23 402 2.29e-35 138
Msa0393520 AT3G05400.1 25.370 473 314 12 16 484 19 456 5.36e-35 137
Msa0393520 AT2G48020.2 25.806 496 315 11 2 486 7 460 9.70e-35 136
Msa0393520 AT2G48020.1 25.806 496 315 11 2 486 7 460 9.70e-35 136
Msa0393520 AT1G19450.1 27.557 479 306 13 18 488 43 488 5.15e-34 134
Msa0393520 AT3G05400.2 24.736 473 297 13 16 484 19 436 1.15e-32 130
Msa0393520 AT1G30220.1 29.360 344 210 11 20 353 25 345 1.26e-32 131
Msa0393520 AT4G04750.1 26.458 480 313 13 16 490 30 474 3.01e-32 129
Msa0393520 AT4G04750.2 26.458 480 313 13 16 490 30 474 3.01e-32 129
Msa0393520 AT4G04750.3 26.829 410 283 9 85 490 122 518 4.28e-32 129
Msa0393520 AT1G54730.3 26.588 425 259 9 29 442 38 420 1.11e-31 127
Msa0393520 AT4G04760.1 25.157 477 309 11 24 490 32 470 4.23e-31 126
Msa0393520 AT1G54730.5 25.482 467 274 10 29 484 38 441 8.78e-31 124
Msa0393520 AT4G04760.3 25.542 415 283 8 85 490 14 411 1.59e-30 123
Msa0393520 AT1G05030.1 24.892 462 309 12 29 484 85 514 1.79e-30 125
Msa0393520 AT1G05030.2 25.061 411 291 9 79 484 64 462 4.03e-30 123
Msa0393520 AT1G08900.4 25.549 364 248 8 85 442 67 413 5.68e-30 122
Msa0393520 AT1G67300.2 24.755 408 264 8 95 484 105 487 8.34e-30 122
Msa0393520 AT1G67300.1 24.510 408 264 8 95 484 105 486 1.62e-29 121
Msa0393520 AT1G67300.3 24.510 408 264 8 95 484 105 486 1.62e-29 121
Msa0393520 AT4G16480.2 28.732 355 212 10 20 360 24 351 1.74e-29 122
Msa0393520 AT4G16480.2 27.083 144 96 3 352 486 416 559 4.33e-11 65.9
Msa0393520 AT4G16480.3 28.732 355 212 10 20 360 24 351 1.74e-29 122
Msa0393520 AT4G16480.3 27.083 144 96 3 352 486 416 559 4.33e-11 65.9
Msa0393520 AT4G16480.1 28.732 355 212 10 20 360 24 351 1.74e-29 122
Msa0393520 AT4G16480.1 27.083 144 96 3 352 486 416 559 4.33e-11 65.9
Msa0393520 AT2G35740.1 28.205 351 217 10 21 360 24 350 2.29e-29 122
Msa0393520 AT2G35740.1 31.532 111 75 1 382 491 453 563 1.83e-11 67.0
Msa0393520 AT4G04760.2 25.364 481 298 13 24 489 32 466 3.71e-29 120
Msa0393520 AT1G67300.6 24.719 356 225 7 95 433 105 434 3.37e-28 117
Msa0393520 AT1G67300.7 24.719 356 225 7 95 433 105 434 3.37e-28 117
Msa0393520 AT1G08920.1 22.199 473 325 9 18 484 27 462 3.65e-28 117
Msa0393520 AT5G27360.4 23.810 420 279 8 6 420 18 401 9.34e-28 115
Msa0393520 AT1G08920.2 22.708 480 321 11 18 484 27 469 1.63e-27 115
Msa0393520 AT1G67300.4 25.000 348 218 7 95 425 105 426 1.78e-27 115
Msa0393520 AT1G67300.5 25.000 348 218 7 95 425 105 426 1.78e-27 115
Msa0393520 AT1G54730.4 25.176 425 244 10 29 442 38 399 2.19e-25 108
Msa0393520 AT1G79820.2 25.616 406 260 15 95 484 108 487 2.42e-25 109
Msa0393520 AT1G79820.1 25.616 406 260 15 95 484 108 487 2.42e-25 109
Msa0393520 AT1G54730.9 26.065 399 238 10 29 414 38 392 1.84e-24 105
Msa0393520 AT1G54730.7 26.065 399 238 10 29 414 38 392 1.84e-24 105
Msa0393520 AT1G08920.3 21.379 435 299 9 18 446 27 424 6.59e-23 101
Msa0393520 AT3G05155.2 24.412 340 221 10 16 353 20 325 1.19e-22 99.4
Msa0393520 AT5G17010.2 23.689 515 268 16 7 484 10 436 1.52e-21 97.4
Msa0393520 AT1G54730.11 26.786 336 195 8 29 353 38 333 7.72e-21 94.0
Msa0393520 AT1G79820.4 24.566 346 236 11 95 433 108 435 8.01e-21 95.5
Msa0393520 AT3G20460.1 21.782 404 297 7 85 484 95 483 1.52e-20 95.1
Msa0393520 AT1G54730.8 24.561 399 223 11 29 414 38 371 1.52e-18 88.2
Msa0393520 AT2G48020.3 24.800 375 235 10 2 368 7 342 5.77e-18 85.9
Msa0393520 AT1G54730.10 25.559 313 185 7 29 330 38 313 1.22e-17 84.3
Msa0393520 AT1G54730.6 25.559 313 185 7 29 330 38 313 1.22e-17 84.3
Msa0393520 AT2G48020.4 24.802 379 235 11 2 372 7 343 2.35e-17 84.3
Msa0393520 AT3G51490.1 26.141 241 157 7 23 262 4 224 6.31e-17 84.3
Msa0393520 AT3G51490.2 26.141 241 157 7 23 262 4 224 6.89e-17 84.3
Msa0393520 AT3G51490.2 26.271 236 152 7 261 481 486 714 5.54e-12 68.9
Msa0393520 AT3G51490.3 28.902 173 120 3 91 262 4 174 4.15e-16 82.0
Msa0393520 AT3G51490.3 26.271 236 152 7 261 481 436 664 6.01e-12 68.6
Msa0393520 AT1G79820.3 21.662 397 239 10 95 484 108 439 8.62e-16 80.1
Msa0393520 AT1G20840.2 31.056 161 108 3 103 262 64 222 2.34e-14 76.3
Msa0393520 AT1G20840.1 31.056 161 108 3 103 262 64 222 2.34e-14 76.3
Msa0393520 AT4G35300.9 29.480 173 119 3 91 262 54 224 7.75e-13 71.6
Msa0393520 AT4G35300.2 29.480 173 119 3 91 262 54 224 7.75e-13 71.6
Msa0393520 AT4G35300.3 29.480 173 119 3 91 262 54 224 7.75e-13 71.6
Msa0393520 AT4G35300.4 29.480 173 119 3 91 262 54 224 8.67e-13 71.2
Msa0393520 AT4G35300.8 29.480 173 119 3 91 262 54 224 8.67e-13 71.2
Msa0393520 AT4G35300.6 29.480 173 119 3 91 262 54 224 8.67e-13 71.2
Msa0393520 AT4G35300.11 29.480 173 119 3 91 262 54 224 8.67e-13 71.2
Msa0393520 AT4G35300.1 29.480 173 119 3 91 262 54 224 8.67e-13 71.2
Msa0393520 AT4G35300.10 29.480 173 119 3 91 262 54 224 8.67e-13 71.2
Msa0393520 AT4G35300.7 29.480 173 119 3 91 262 54 224 8.67e-13 71.2

Find 91 sgRNAs with CRISPR-Local

Find 195 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTATGCTGTTTGGTGTTTC+TGG 0.080373 3_2:+7599822 None:intergenic
ATTGGAACATTCTTGGTTTC+TGG 0.128771 3_2:+7599072 None:intergenic
AACATCATGTGTACCTCTTA+TGG 0.246160 3_2:+7599755 None:intergenic
GCCATTTCTGATAGATATAA+TGG 0.247787 3_2:+7600026 None:intergenic
CTTTGTAAGATATTCTTAAA+TGG 0.251429 3_2:+7599675 None:intergenic
ATACTTGGTCGTGTTCTTCT+TGG 0.258509 3_2:-7600865 Msa0393520:CDS
AAATAGGATTGGAGCATAAA+AGG 0.275402 3_2:+7599578 None:intergenic
GGTTATGATATAGGAATTTC+AGG 0.277570 3_2:-7602034 Msa0393520:intron
TGGAATTGGCTTTGCTAATC+AGG 0.280534 3_2:-7600839 Msa0393520:intron
GGTGGTGCTGCATTCCTTAT+TGG 0.287192 3_2:-7600928 Msa0393520:CDS
TTGCTCAATTGGAACATTCT+TGG 0.300336 3_2:+7599065 None:intergenic
ATGTTATGTCATTTCAAGTA+TGG 0.305249 3_2:-7599156 Msa0393520:CDS
ATTATCTTCGGTTATGATAT+AGG 0.305759 3_2:-7602043 Msa0393520:CDS
ACCCTATCCATTTGCTCAAT+TGG 0.305882 3_2:+7599054 None:intergenic
CTTGTTGTCTTGTTTCATCT+TGG 0.317999 3_2:+7601086 None:intergenic
ACATGATACTTGCTTCAATA+AGG 0.321693 3_2:+7599715 None:intergenic
GTTCTTCTTGGAGTTGGAAT+TGG 0.324453 3_2:-7600853 Msa0393520:CDS
CCAGCTTTAATCCTCACTTT+AGG 0.346251 3_2:-7599858 Msa0393520:CDS
TATTGTGATTCTCTCTTGTA+TGG 0.347026 3_2:-7602083 Msa0393520:CDS
TCTTGTATGGTGGCTGCCAC+TGG 0.347170 3_2:-7602070 Msa0393520:CDS
AAGCAAAGAAAGATGCTAAA+AGG 0.350210 3_2:+7600995 None:intergenic
TTGATTGCTCCTCTATATCT+TGG 0.356231 3_2:+7599999 None:intergenic
CCTCTTCCATTGCTTGCAAT+TGG 0.356504 3_2:+7602127 None:intergenic
CATTGATTCCTGTGAATTGT+TGG 0.356994 3_2:+7599607 None:intergenic
TTCATCTTGGTGTATACATC+TGG 0.359272 3_2:+7601099 None:intergenic
TTCTTCTCACAAATTCTAAT+AGG 0.359757 3_2:-7599411 Msa0393520:CDS
TTGATATGCATTTATGTTGC+CGG 0.361579 3_2:-7599318 Msa0393520:CDS
CACCAAGAGCTGCTCCAATA+AGG 0.370888 3_2:+7600914 None:intergenic
TTCCTTATTGGAGCAGCTCT+TGG 0.384601 3_2:-7600916 Msa0393520:CDS
TTGAGCAAATGGATAGGGTT+TGG 0.386241 3_2:-7599050 Msa0393520:CDS
ATATAGACCTCAACTTGTTA+TGG 0.392956 3_2:-7599649 Msa0393520:CDS
TTGCCGGATTTGCTTGGTCA+TGG 0.394117 3_2:-7599302 Msa0393520:CDS
TTATGCTGTTTGGTGTTTCT+GGG 0.396973 3_2:+7599823 None:intergenic
GCACCACCTACAAGAATTGA+TGG 0.406112 3_2:+7600943 None:intergenic
TGCCGGATTTGCTTGGTCAT+GGG 0.407730 3_2:-7599301 Msa0393520:CDS
TCAGCAAATTTAATCAACTT+TGG 0.419401 3_2:-7599939 Msa0393520:CDS
GAATGTTCCAATTGAGCAAA+TGG 0.420157 3_2:-7599061 Msa0393520:CDS
AGAAAAGATCAAAGACGGTT+GGG 0.422002 3_2:-7599913 Msa0393520:CDS
GCAGTTATGGTAGGAATTGT+AGG 0.423411 3_2:-7599516 Msa0393520:CDS
CCCATTATATCTATCAGAAA+TGG 0.423439 3_2:-7600027 Msa0393520:CDS
TCATCAATCACAAGAGCCTT+TGG 0.425277 3_2:-7600973 Msa0393520:CDS
GGTCGTGTTCTTCTTGGAGT+TGG 0.425536 3_2:-7600859 Msa0393520:CDS
GCCACTGGAGGCATTATCTT+CGG 0.431033 3_2:-7602055 Msa0393520:CDS
AATTCTAATAGGAAGTATAA+TGG 0.436111 3_2:-7599400 Msa0393520:CDS
TTCCAACTATGTGTTGGAAT+TGG 0.441232 3_2:-7599969 Msa0393520:CDS
CTTATTGGAGCAGCTCTTGG+TGG 0.464561 3_2:-7600913 Msa0393520:CDS
CTAGGAACCAACCATCCTAA+TGG 0.475289 3_2:+7599276 None:intergenic
CACCAATTCCAACACATAGT+TGG 0.481665 3_2:+7599967 None:intergenic
CCATTTCTGATAGATATAAT+GGG 0.482018 3_2:+7600027 None:intergenic
GCCGGATTTGCTTGGTCATG+GGG 0.494733 3_2:-7599300 Msa0393520:CDS
TGATGTTCAACAAGAATTTG+AGG 0.494949 3_2:-7599739 Msa0393520:CDS
TCCAATTGAGCAAATGGATA+GGG 0.497217 3_2:-7599055 Msa0393520:CDS
ATTGTTGGAGACAAGATTGA+AGG 0.501127 3_2:-7599003 Msa0393520:CDS
TGCAGGTGGTGTAACATCAA+TGG 0.504221 3_2:-7601145 Msa0393520:intron
ATACAAGAGAGAATCACAAT+AGG 0.504849 3_2:+7602085 None:intergenic
GTGATGAAGTGAATGTTGTT+AGG 0.505701 3_2:+7601031 None:intergenic
TTAATGCTGCAATCCATAAG+AGG 0.508403 3_2:-7599768 Msa0393520:CDS
AGTATAATGGCAGCACAACT+TGG 0.520104 3_2:-7599387 Msa0393520:CDS
ACTTCATCACTATATATAGC+TGG 0.520261 3_2:-7601018 Msa0393520:CDS
ATGGCACTTCCAAGATATAG+AGG 0.524996 3_2:-7600008 Msa0393520:CDS
AATATATACATGCTAATACT+TGG 0.530434 3_2:-7600880 Msa0393520:CDS
GCAGCACAACTTGGTGATCA+TGG 0.536187 3_2:-7599378 Msa0393520:CDS
CAGAAAAGATCAAAGACGGT+TGG 0.543560 3_2:-7599914 Msa0393520:CDS
GAGCTACCAATTGCAAGCAA+TGG 0.546840 3_2:-7602133 Msa0393520:CDS
CGCAAACCATCAATTCTTGT+AGG 0.548548 3_2:-7600949 Msa0393520:CDS
AATGGCTTCCAACTATGTGT+TGG 0.553875 3_2:-7599975 Msa0393520:CDS
CCTAAAGTGAGGATTAAAGC+TGG 0.553920 3_2:+7599858 None:intergenic
TAAAGCTGGAACTGCTGCCA+TGG 0.554550 3_2:+7599872 None:intergenic
AATTGATGGTTTGCGACCAA+AGG 0.563264 3_2:+7600957 None:intergenic
GAAAAGATCAAAGACGGTTG+GGG 0.563993 3_2:-7599912 Msa0393520:CDS
TTTATGTTGCCGGATTTGCT+TGG 0.566712 3_2:-7599308 Msa0393520:CDS
AGCACTTTCGCCTAATCCAA+TGG 0.569123 3_2:+7599551 None:intergenic
AAGTGAATGTTGTTAGGAGT+TGG 0.571646 3_2:+7601037 None:intergenic
TGTGATTCTCTCTTGTATGG+TGG 0.579802 3_2:-7602080 Msa0393520:CDS
TTCCAATTGAGCAAATGGAT+AGG 0.581303 3_2:-7599056 Msa0393520:CDS
TGCAACTGTAATACTTTGCG+CGG 0.587190 3_2:+7599224 None:intergenic
CCAATTGCAAGCAATGGAAG+AGG 0.588796 3_2:-7602127 Msa0393520:CDS
AGATCAAAGACGGTTGGGGA+TGG 0.591219 3_2:-7599908 Msa0393520:CDS
TGTATGGTGGCTGCCACTGG+AGG 0.591273 3_2:-7602067 Msa0393520:CDS
GGTACAGAAAAGATCAAAGA+CGG 0.591721 3_2:-7599918 Msa0393520:CDS
ATGCTCATAGTCGATAAACT+AGG 0.596406 3_2:-7599471 Msa0393520:CDS
AGCAATGGAAGAGGATACAA+TGG 0.603683 3_2:-7602118 Msa0393520:CDS
GCTATTGCCATAACAAGTTG+AGG 0.605625 3_2:+7599642 None:intergenic
CCGGATTTGCTTGGTCATGG+GGG 0.615253 3_2:-7599299 Msa0393520:CDS
ATGGCGAATTTCTCTAGCCA+TGG 0.615608 3_2:-7599889 Msa0393520:CDS
GACAAAATGCTCCTAAAGTG+AGG 0.616967 3_2:+7599847 None:intergenic
AAACCATCAATTCTTGTAGG+TGG 0.619483 3_2:-7600946 Msa0393520:CDS
GCGGCTGATCTAATCTCCAA+TGG 0.626357 3_2:+7599243 None:intergenic
TATAGAGGAGCAATCAACAA+TGG 0.645205 3_2:-7599993 Msa0393520:CDS
ACCGAAGATAATGCCTCCAG+TGG 0.655294 3_2:+7602054 None:intergenic
GATTGAAGGCAAACACACTG+TGG 0.740057 3_2:-7598989 Msa0393520:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATCTATAATAACTATATAA+GGG + chr3_2:7599429-7599448 None:intergenic 10.0%
!! ACTTCAAATTTAAAAATTTA+AGG + chr3_2:7599732-7599751 None:intergenic 10.0%
!! TAAATATGTAAGTTAATATA+TGG - chr3_2:7600433-7600452 Msa0393520:intron 10.0%
!! GTATCTATAATAACTATATA+AGG + chr3_2:7599430-7599449 None:intergenic 15.0%
!!! ATCTACAGTTTTTTTTTTAT+AGG + chr3_2:7599590-7599609 None:intergenic 15.0%
!!! ATTTAAAGATTATTTGGTTT+TGG + chr3_2:7599764-7599783 None:intergenic 15.0%
!! AGAAAAACATTGTAATATAT+TGG + chr3_2:7600325-7600344 None:intergenic 15.0%
!!! AATGAATATTTTTATCTAGT+CGG - chr3_2:7600527-7600546 Msa0393520:intron 15.0%
!!! AAATTTTAAGATGATATCAT+AGG + chr3_2:7600828-7600847 None:intergenic 15.0%
!! TATGATATCATCTTAAAATT+TGG - chr3_2:7600827-7600846 Msa0393520:intron 15.0%
!!! TTTTTTTGGAAAAAAATTGT+TGG - chr3_2:7602108-7602127 Msa0393520:CDS 15.0%
!! ATATAAGGGATCAAAAATAT+TGG + chr3_2:7599415-7599434 None:intergenic 20.0%
!! ACTATACAAAATAGATGATA+TGG - chr3_2:7599660-7599679 Msa0393520:CDS 20.0%
!! AAAATTCGTTGAAATTACAT+GGG - chr3_2:7599697-7599716 Msa0393520:CDS 20.0%
!! CTCGTAATTTAAAGATTATT+TGG + chr3_2:7599770-7599789 None:intergenic 20.0%
!! CAAATAATCTTTAAATTACG+AGG - chr3_2:7599768-7599787 Msa0393520:CDS 20.0%
!!! AAATCCAAAGTTTTTTTACA+TGG - chr3_2:7599794-7599813 Msa0393520:CDS 20.0%
!!! AATCCAAAGTTTTTTTACAT+GGG - chr3_2:7599795-7599814 Msa0393520:CDS 20.0%
!! TAAATTAAAATTTGCCCAAA+TGG - chr3_2:7599819-7599838 Msa0393520:CDS 20.0%
!! CAAAAAGAGAAAAAAATTGA+AGG + chr3_2:7599963-7599982 None:intergenic 20.0%
!! AATATATACATGCTAATACT+TGG - chr3_2:7600246-7600265 Msa0393520:intron 20.0%
!! ATAATGAAAATGAGAGATAA+TGG - chr3_2:7600367-7600386 Msa0393520:intron 20.0%
!! CACTAAAATTTCTAAATATG+TGG + chr3_2:7600404-7600423 None:intergenic 20.0%
!! CTAAAAAAATAAAGTGAGTT+CGG + chr3_2:7600562-7600581 None:intergenic 20.0%
!! TGTACAAAAGAAAATTAAGT+GGG + chr3_2:7600697-7600716 None:intergenic 20.0%
!! TTGTACAAAAGAAAATTAAG+TGG + chr3_2:7600698-7600717 None:intergenic 20.0%
!! TATTAAGCTCTTTAATTCAT+TGG - chr3_2:7601001-7601020 Msa0393520:CDS 20.0%
!! ACATTAACATAAACTTTAGA+TGG - chr3_2:7601046-7601065 Msa0393520:CDS 20.0%
!! CTTTGTAAGATATTCTTAAA+TGG + chr3_2:7601454-7601473 None:intergenic 20.0%
!!! AATTCTAATAGGAAGTATAA+TGG - chr3_2:7601726-7601745 Msa0393520:intron 20.0%
! ATTATCTTCGGTTATGATAT+AGG - chr3_2:7599083-7599102 Msa0393520:CDS 25.0%
! GAAAAGATAATGAAGTTGAA+TGG + chr3_2:7599129-7599148 None:intergenic 25.0%
!! CTTGAATCTTTATTTGATTG+TGG + chr3_2:7599193-7599212 None:intergenic 25.0%
! AAGATTGTTATCGCAAAAAA+TGG + chr3_2:7599481-7599500 None:intergenic 25.0%
! AAAATAGATGATATGGTATG+AGG - chr3_2:7599667-7599686 Msa0393520:CDS 25.0%
! AAATAGATGATATGGTATGA+GGG - chr3_2:7599668-7599687 Msa0393520:CDS 25.0%
!! CATGTAATTTCAACGAATTT+TGG + chr3_2:7599698-7599717 None:intergenic 25.0%
! CAAAATTCGTTGAAATTACA+TGG - chr3_2:7599696-7599715 Msa0393520:CDS 25.0%
! AAATTCGTTGAAATTACATG+GGG - chr3_2:7599698-7599717 Msa0393520:CDS 25.0%
! TATCCCATGTAAAAAAACTT+TGG + chr3_2:7599801-7599820 None:intergenic 25.0%
!!! CAATTTTTTTCTCTTTTTGC+AGG - chr3_2:7599964-7599983 Msa0393520:CDS 25.0%
! CAATCTCTTAAAATTTGTGT+CGG - chr3_2:7600624-7600643 Msa0393520:intron 25.0%
!! TCACTTATAAACTCATTTTC+AGG - chr3_2:7600902-7600921 Msa0393520:CDS 25.0%
! GATGATCAAAAGTTCAAAAT+TGG + chr3_2:7600939-7600958 None:intergenic 25.0%
!!! AAAAGTTTATTTTCTTCTGC+AGG - chr3_2:7601072-7601091 Msa0393520:CDS 25.0%
! CCATTTCTGATAGATATAAT+GGG + chr3_2:7601102-7601121 None:intergenic 25.0%
! TCAGCAAATTTAATCAACTT+TGG - chr3_2:7601187-7601206 Msa0393520:intron 25.0%
! CTAATCCAATGGTTAAAAAT+AGG + chr3_2:7601567-7601586 None:intergenic 25.0%
!!! CTATTTTTAACCATTGGATT+AGG - chr3_2:7601565-7601584 Msa0393520:intron 25.0%
! TTCTTCTCACAAATTCTAAT+AGG - chr3_2:7601715-7601734 Msa0393520:intron 25.0%
!! ATGTTATGTCATTTCAAGTA+TGG - chr3_2:7601970-7601989 Msa0393520:intron 25.0%
!!! TATGGAACTTTCTTCTTTTT+TGG - chr3_2:7601988-7602007 Msa0393520:intron 25.0%
!!! TTTGGAGAGAACATTTTTTT+TGG - chr3_2:7602094-7602113 Msa0393520:CDS 25.0%
ATACAAGAGAGAATCACAAT+AGG + chr3_2:7599044-7599063 None:intergenic 30.0%
TATTGTGATTCTCTCTTGTA+TGG - chr3_2:7599043-7599062 Msa0393520:CDS 30.0%
GGTTATGATATAGGAATTTC+AGG - chr3_2:7599092-7599111 Msa0393520:CDS 30.0%
!!! TTTTTTTCTCTTTTTGCAGG+TGG - chr3_2:7599967-7599986 Msa0393520:CDS 30.0%
GGAAAAAACTTCTCCAAAAA+TGG + chr3_2:7600009-7600028 None:intergenic 30.0%
ACTTCATCACTATATATAGC+TGG - chr3_2:7600108-7600127 Msa0393520:intron 30.0%
AAGCAAAGAAAGATGCTAAA+AGG + chr3_2:7600134-7600153 None:intergenic 30.0%
TAGGACAAAACTGATCTATT+AGG - chr3_2:7600476-7600495 Msa0393520:intron 30.0%
AGCTCTTTAATTCATTGGAT+TGG - chr3_2:7601006-7601025 Msa0393520:CDS 30.0%
! TGGATTGGATACTATTATCT+TGG - chr3_2:7601021-7601040 Msa0393520:CDS 30.0%
CCCATTATATCTATCAGAAA+TGG - chr3_2:7601099-7601118 Msa0393520:CDS 30.0%
GCCATTTCTGATAGATATAA+TGG + chr3_2:7601103-7601122 None:intergenic 30.0%
!!! TTTGATGGTTTTTGCTGTTT+TGG + chr3_2:7601330-7601349 None:intergenic 30.0%
!! GCATTAACTTAGCTTTTTGA+TGG + chr3_2:7601345-7601364 None:intergenic 30.0%
TGATGTTCAACAAGAATTTG+AGG - chr3_2:7601387-7601406 Msa0393520:intron 30.0%
ACATGATACTTGCTTCAATA+AGG + chr3_2:7601414-7601433 None:intergenic 30.0%
!! ATATAGACCTCAACTTGTTA+TGG - chr3_2:7601477-7601496 Msa0393520:intron 30.0%
AAATAGGATTGGAGCATAAA+AGG + chr3_2:7601551-7601570 None:intergenic 30.0%
CCAATGGTTAAAAATAGGAT+TGG + chr3_2:7601562-7601581 None:intergenic 30.0%
!!! CCAATCCTATTTTTAACCAT+TGG - chr3_2:7601559-7601578 Msa0393520:intron 30.0%
!! TTCACTTTTATCTGCAGTTA+TGG - chr3_2:7601597-7601616 Msa0393520:intron 30.0%
TTGATATGCATTTATGTTGC+CGG - chr3_2:7601808-7601827 Msa0393520:intron 30.0%
!!! TTTCTTCTTTTTTGGAGGTT+GGG - chr3_2:7601996-7602015 Msa0393520:intron 30.0%
AGATACAAGTAGTGTACAAG+TGG - chr3_2:7599444-7599463 Msa0393520:CDS 35.0%
GTCTTTACATCACTGTCATT+TGG - chr3_2:7599545-7599564 Msa0393520:CDS 35.0%
AAAATTTGCCCAAATGGCAT+AGG - chr3_2:7599825-7599844 Msa0393520:CDS 35.0%
AAATTTGCCCAAATGGCATA+GGG - chr3_2:7599826-7599845 Msa0393520:CDS 35.0%
!!! AACATCAATGGTGCCATTTT+TGG - chr3_2:7599993-7600012 Msa0393520:CDS 35.0%
! TTCATCTTGGTGTATACATC+TGG + chr3_2:7600030-7600049 None:intergenic 35.0%
!! CTTGTTGTCTTGTTTCATCT+TGG + chr3_2:7600043-7600062 None:intergenic 35.0%
AAGTGAATGTTGTTAGGAGT+TGG + chr3_2:7600092-7600111 None:intergenic 35.0%
GTGATGAAGTGAATGTTGTT+AGG + chr3_2:7600098-7600117 None:intergenic 35.0%
AAACCATCAATTCTTGTAGG+TGG - chr3_2:7600180-7600199 Msa0393520:intron 35.0%
TATTAGGTCGAAGAGTTTCA+AGG - chr3_2:7600492-7600511 Msa0393520:intron 35.0%
!! CATGTGAAACTGACTTGTAT+AGG - chr3_2:7600659-7600678 Msa0393520:intron 35.0%
!! AAACTGACTTGTATAGGTGA+GGG - chr3_2:7600665-7600684 Msa0393520:intron 35.0%
GTCAGTGCAAAACATGTTTA+TGG - chr3_2:7600964-7600983 Msa0393520:CDS 35.0%
TTGATTGCTCCTCTATATCT+TGG + chr3_2:7601130-7601149 None:intergenic 35.0%
TATAGAGGAGCAATCAACAA+TGG - chr3_2:7601133-7601152 Msa0393520:CDS 35.0%
TTCCAACTATGTGTTGGAAT+TGG - chr3_2:7601157-7601176 Msa0393520:intron 35.0%
GGTACAGAAAAGATCAAAGA+CGG - chr3_2:7601208-7601227 Msa0393520:intron 35.0%
AGAAAAGATCAAAGACGGTT+GGG - chr3_2:7601213-7601232 Msa0393520:intron 35.0%
!! TTATGCTGTTTGGTGTTTCT+GGG + chr3_2:7601306-7601325 None:intergenic 35.0%
!! ATTATGCTGTTTGGTGTTTC+TGG + chr3_2:7601307-7601326 None:intergenic 35.0%
!! CTGTTTTGGATTATGCTGTT+TGG + chr3_2:7601316-7601335 None:intergenic 35.0%
TTAATGCTGCAATCCATAAG+AGG - chr3_2:7601358-7601377 Msa0393520:intron 35.0%
AACATCATGTGTACCTCTTA+TGG + chr3_2:7601374-7601393 None:intergenic 35.0%
CCTGTGAATTGTTGGAAAAA+AGG + chr3_2:7601514-7601533 None:intergenic 35.0%
!!! CCTTTTTTCCAACAATTCAC+AGG - chr3_2:7601511-7601530 Msa0393520:intron 35.0%
!! CATTGATTCCTGTGAATTGT+TGG + chr3_2:7601522-7601541 None:intergenic 35.0%
! CTTTTATCTGCAGTTATGGT+AGG - chr3_2:7601601-7601620 Msa0393520:intron 35.0%
ATGCTCATAGTCGATAAACT+AGG - chr3_2:7601655-7601674 Msa0393520:intron 35.0%
!!! CGAAGAGTTTTGTTCATATC+AGG - chr3_2:7601679-7601698 Msa0393520:intron 35.0%
!!! AGAGTTTTGTTCATATCAGG+TGG - chr3_2:7601682-7601701 Msa0393520:intron 35.0%
! TCCTAGTGAGATTTTTCCAT+TGG - chr3_2:7601867-7601886 Msa0393520:intron 35.0%
TCCAATGGAAAAATCTCACT+AGG + chr3_2:7601871-7601890 None:intergenic 35.0%
!!! GGAACTTTCTTCTTTTTTGG+AGG - chr3_2:7601991-7602010 Msa0393520:intron 35.0%
!!! CTTTCTTCTTTTTTGGAGGT+TGG - chr3_2:7601995-7602014 Msa0393520:intron 35.0%
ATTGGAACATTCTTGGTTTC+TGG + chr3_2:7602057-7602076 None:intergenic 35.0%
TTGCTCAATTGGAACATTCT+TGG + chr3_2:7602064-7602083 None:intergenic 35.0%
GAATGTTCCAATTGAGCAAA+TGG - chr3_2:7602065-7602084 Msa0393520:CDS 35.0%
TTCCAATTGAGCAAATGGAT+AGG - chr3_2:7602070-7602089 Msa0393520:CDS 35.0%
TCCAATTGAGCAAATGGATA+GGG - chr3_2:7602071-7602090 Msa0393520:CDS 35.0%
ATTGTTGGAGACAAGATTGA+AGG - chr3_2:7602123-7602142 Msa0393520:CDS 35.0%
AGCAATGGAAGAGGATACAA+TGG - chr3_2:7599008-7599027 Msa0393520:CDS 40.0%
TGTGATTCTCTCTTGTATGG+TGG - chr3_2:7599046-7599065 Msa0393520:CDS 40.0%
! GTGTTTACCCTATGCCATTT+GGG + chr3_2:7599836-7599855 None:intergenic 40.0%
TCATCAATCACAAGAGCCTT+TGG - chr3_2:7600153-7600172 Msa0393520:intron 40.0%
! AATTGATGGTTTGCGACCAA+AGG + chr3_2:7600172-7600191 None:intergenic 40.0%
CGCAAACCATCAATTCTTGT+AGG - chr3_2:7600177-7600196 Msa0393520:intron 40.0%
ATACTTGGTCGTGTTCTTCT+TGG - chr3_2:7600261-7600280 Msa0393520:intron 40.0%
GTTCTTCTTGGAGTTGGAAT+TGG - chr3_2:7600273-7600292 Msa0393520:intron 40.0%
!! TGGAATTGGCTTTGCTAATC+AGG - chr3_2:7600287-7600306 Msa0393520:intron 40.0%
! GAGAGATAATGGCACTCTTT+AGG - chr3_2:7600378-7600397 Msa0393520:intron 40.0%
!! GAAACTGACTTGTATAGGTG+AGG - chr3_2:7600664-7600683 Msa0393520:intron 40.0%
GTCACACTAGACATATGTCT+GGG + chr3_2:7600758-7600777 None:intergenic 40.0%
!! TCTCACAAGTCGGTTTTGTA+TGG + chr3_2:7600869-7600888 None:intergenic 40.0%
ACATTCCTCTTCTCACAAGT+CGG + chr3_2:7600879-7600898 None:intergenic 40.0%
ATGGCACTTCCAAGATATAG+AGG - chr3_2:7601118-7601137 Msa0393520:CDS 40.0%
AATGGCTTCCAACTATGTGT+TGG - chr3_2:7601151-7601170 Msa0393520:intron 40.0%
CACCAATTCCAACACATAGT+TGG + chr3_2:7601162-7601181 None:intergenic 40.0%
CAGAAAAGATCAAAGACGGT+TGG - chr3_2:7601212-7601231 Msa0393520:intron 40.0%
GAAAAGATCAAAGACGGTTG+GGG - chr3_2:7601214-7601233 Msa0393520:intron 40.0%
CCTAAAGTGAGGATTAAAGC+TGG + chr3_2:7601271-7601290 None:intergenic 40.0%
! CCAGCTTTAATCCTCACTTT+AGG - chr3_2:7601268-7601287 Msa0393520:intron 40.0%
GACAAAATGCTCCTAAAGTG+AGG + chr3_2:7601282-7601301 None:intergenic 40.0%
GCTATTGCCATAACAAGTTG+AGG + chr3_2:7601487-7601506 None:intergenic 40.0%
GCAGTTATGGTAGGAATTGT+AGG - chr3_2:7601610-7601629 Msa0393520:intron 40.0%
AGTATAATGGCAGCACAACT+TGG - chr3_2:7601739-7601758 Msa0393520:intron 40.0%
! TTTATGTTGCCGGATTTGCT+TGG - chr3_2:7601818-7601837 Msa0393520:intron 40.0%
TGCAACTGTAATACTTTGCG+CGG + chr3_2:7601905-7601924 None:intergenic 40.0%
ACCCTATCCATTTGCTCAAT+TGG + chr3_2:7602075-7602094 None:intergenic 40.0%
TTGAGCAAATGGATAGGGTT+TGG - chr3_2:7602076-7602095 Msa0393520:CDS 40.0%
GAGCTACCAATTGCAAGCAA+TGG - chr3_2:7598993-7599012 Msa0393520:CDS 45.0%
CCTCTTCCATTGCTTGCAAT+TGG + chr3_2:7599002-7599021 None:intergenic 45.0%
CCAATTGCAAGCAATGGAAG+AGG - chr3_2:7598999-7599018 Msa0393520:CDS 45.0%
CGTGTTTACCCTATGCCATT+TGG + chr3_2:7599837-7599856 None:intergenic 45.0%
TGCAGGTGGTGTAACATCAA+TGG - chr3_2:7599981-7600000 Msa0393520:CDS 45.0%
GCACCACCTACAAGAATTGA+TGG + chr3_2:7600186-7600205 None:intergenic 45.0%
TTCCTTATTGGAGCAGCTCT+TGG - chr3_2:7600210-7600229 Msa0393520:intron 45.0%
CGTCACACTAGACATATGTC+TGG + chr3_2:7600759-7600778 None:intergenic 45.0%
TATGTCTAGTGTGACGTGAG+TGG - chr3_2:7600763-7600782 Msa0393520:intron 45.0%
!! CAAAACCGACTTGTGAGAAG+AGG - chr3_2:7600871-7600890 Msa0393520:CDS 45.0%
ATGGCGAATTTCTCTAGCCA+TGG - chr3_2:7601237-7601256 Msa0393520:intron 45.0%
AGCACTTTCGCCTAATCCAA+TGG + chr3_2:7601578-7601597 None:intergenic 45.0%
CTAGGAACCAACCATCCTAA+TGG + chr3_2:7601853-7601872 None:intergenic 45.0%
!!! CTTCTTTTTTGGAGGTTGGG+TGG - chr3_2:7601999-7602018 Msa0393520:intron 45.0%
GATTGAAGGCAAACACACTG+TGG - chr3_2:7602137-7602156 Msa0393520:CDS 45.0%
!! GCCACTGGAGGCATTATCTT+CGG - chr3_2:7599071-7599090 Msa0393520:CDS 50.0%
ACCGAAGATAATGCCTCCAG+TGG + chr3_2:7599075-7599094 None:intergenic 50.0%
!! GGTGGTGCTGCATTCCTTAT+TGG - chr3_2:7600198-7600217 Msa0393520:intron 50.0%
CACCAAGAGCTGCTCCAATA+AGG + chr3_2:7600215-7600234 None:intergenic 50.0%
CTTATTGGAGCAGCTCTTGG+TGG - chr3_2:7600213-7600232 Msa0393520:intron 50.0%
GGTCGTGTTCTTCTTGGAGT+TGG - chr3_2:7600267-7600286 Msa0393520:intron 50.0%
TGCCTTTATGACACGCTGCT+AGG - chr3_2:7600457-7600476 Msa0393520:intron 50.0%
GTCCTAGCAGCGTGTCATAA+AGG + chr3_2:7600462-7600481 None:intergenic 50.0%
ACATATGTCTGGGCGTGAAG+GGG + chr3_2:7600748-7600767 None:intergenic 50.0%
GACATATGTCTGGGCGTGAA+GGG + chr3_2:7600749-7600768 None:intergenic 50.0%
AGACATATGTCTGGGCGTGA+AGG + chr3_2:7600750-7600769 None:intergenic 50.0%
AGATCAAAGACGGTTGGGGA+TGG - chr3_2:7601218-7601237 Msa0393520:intron 50.0%
TAAAGCTGGAACTGCTGCCA+TGG + chr3_2:7601257-7601276 None:intergenic 50.0%
! GCAGCACAACTTGGTGATCA+TGG - chr3_2:7601748-7601767 Msa0393520:intron 50.0%
! TTGCCGGATTTGCTTGGTCA+TGG - chr3_2:7601824-7601843 Msa0393520:intron 50.0%
! TGCCGGATTTGCTTGGTCAT+GGG - chr3_2:7601825-7601844 Msa0393520:intron 50.0%
GCGGCTGATCTAATCTCCAA+TGG + chr3_2:7601886-7601905 None:intergenic 50.0%
TCTTGTATGGTGGCTGCCAC+TGG - chr3_2:7599056-7599075 Msa0393520:CDS 55.0%
CCGAAATCCGTTGAGCTACC+CGG + chr3_2:7600801-7600820 None:intergenic 55.0%
! CCGGGTAGCTCAACGGATTT+CGG - chr3_2:7600798-7600817 Msa0393520:intron 55.0%
! GCCGGATTTGCTTGGTCATG+GGG - chr3_2:7601826-7601845 Msa0393520:intron 55.0%
CCCCCATGACCAAGCAAATC+CGG + chr3_2:7601830-7601849 None:intergenic 55.0%
! CCGGATTTGCTTGGTCATGG+GGG - chr3_2:7601827-7601846 Msa0393520:intron 55.0%
ATGGGGGCCATTAGGATGGT+TGG - chr3_2:7601843-7601862 Msa0393520:intron 55.0%
TGTATGGTGGCTGCCACTGG+AGG - chr3_2:7599059-7599078 Msa0393520:CDS 60.0%
TGACGTGAGTGGCCCGATAG+CGG - chr3_2:7600774-7600793 Msa0393520:intron 60.0%
GCTTGGTCATGGGGGCCATT+AGG - chr3_2:7601835-7601854 Msa0393520:intron 60.0%
GGTCATGGGGGCCATTAGGA+TGG - chr3_2:7601839-7601858 Msa0393520:intron 60.0%
GACGTGAGTGGCCCGATAGC+GGG - chr3_2:7600775-7600794 Msa0393520:intron 65.0%
TGAGCTACCCGGCCCGCTAT+CGG + chr3_2:7600790-7600809 None:intergenic 65.0%
! TAGCGGGCCGGGTAGCTCAA+CGG - chr3_2:7600791-7600810 Msa0393520:intron 65.0%
!! TGAGTGGCCCGATAGCGGGC+CGG - chr3_2:7600779-7600798 Msa0393520:intron 70.0%
GAGCTACCCGGCCCGCTATC+GGG + chr3_2:7600789-7600808 None:intergenic 70.0%
!! GAGTGGCCCGATAGCGGGCC+GGG - chr3_2:7600780-7600799 Msa0393520:intron 75.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 7598981 7602167 7598981 ID=Msa0393520;Name=Msa0393520
chr3_2 mRNA 7598981 7602167 7598981 ID=Msa0393520-mRNA-1;Parent=Msa0393520;Name=Msa0393520-mRNA-1;_AED=0.57;_eAED=0.57;_QI=0|0|0|0.33|1|1|3|0|509
chr3_2 exon 7602035 7602167 7602035 ID=Msa0393520-mRNA-1:exon:2002;Parent=Msa0393520-mRNA-1
chr3_2 exon 7600840 7601162 7600840 ID=Msa0393520-mRNA-1:exon:2001;Parent=Msa0393520-mRNA-1
chr3_2 exon 7598981 7600054 7598981 ID=Msa0393520-mRNA-1:exon:2000;Parent=Msa0393520-mRNA-1
chr3_2 CDS 7602035 7602167 7602035 ID=Msa0393520-mRNA-1:cds;Parent=Msa0393520-mRNA-1
chr3_2 CDS 7600840 7601162 7600840 ID=Msa0393520-mRNA-1:cds;Parent=Msa0393520-mRNA-1
chr3_2 CDS 7598981 7600054 7598981 ID=Msa0393520-mRNA-1:cds;Parent=Msa0393520-mRNA-1
Gene Sequence

>Msa0393520

ATGGCAGTAGTAGAGCTACCAATTGCAAGCAATGGAAGAGGATACAATGGAAAGATGACTCCTATTGTGATTCTCTCTTGTATGGTGGCTGCCACTGGAGGCATTATCTTCGGTTATGATATAGGAATTTCAGGTGGTGTAACATCAATGGTGCCATTTTTGGAGAAGTTTTTTCCAGATGTATACACCAAGATGAAACAAGACAACAAGATAAGCAATTACTGCAAATTTGATAGCCAACTCCTAACAACATTCACTTCATCACTATATATAGCTGGCCTTTTAGCATCTTTCTTTGCTTCATCAATCACAAGAGCCTTTGGTCGCAAACCATCAATTCTTGTAGGTGGTGCTGCATTCCTTATTGGAGCAGCTCTTGGTGGTGCTGCACTTAATATATACATGCTAATACTTGGTCGTGTTCTTCTTGGAGTTGGAATTGGCTTTGCTAATCAGGCAGTCCCATTATATCTATCAGAAATGGCACTTCCAAGATATAGAGGAGCAATCAACAATGGCTTCCAACTATGTGTTGGAATTGGTGTTTTATCAGCAAATTTAATCAACTTTGGTACAGAAAAGATCAAAGACGGTTGGGGATGGCGAATTTCTCTAGCCATGGCAGCAGTTCCAGCTTTAATCCTCACTTTAGGAGCATTTTGTCTCCCAGAAACACCAAACAGCATAATCCAAAACAGCAAAAACCATCAAAAAGCTAAGTTAATGCTGCAATCCATAAGAGGTACACATGATGTTCAACAAGAATTTGAGGACCTTATTGAAGCAAGTATCATGTCAAATTCTATCAAACATCCATTTAAGAATATCTTACAAAGAAAATATAGACCTCAACTTGTTATGGCAATAGCTATACCTTTTTTCCAACAATTCACAGGAATCAATGTCATTTCCTTTTATGCTCCAATCCTATTTTTAACCATTGGATTAGGCGAAAGTGCTTCACTTTTATCTGCAGTTATGGTAGGAATTGTAGGCACTACTTCAACATTCATATCAATGCTCATAGTCGATAAACTAGGTCGAAGAGTTTTGTTCATATCAGGTGGAATTCAAATGTTCTTCTCACAAATTCTAATAGGAAGTATAATGGCAGCACAACTTGGTGATCATGGTGAAATAAGCAAGAAATATGCATATTTGATTCTAGTTTTGATATGCATTTATGTTGCCGGATTTGCTTGGTCATGGGGGCCATTAGGATGGTTGGTTCCTAGTGAGATTTTTCCATTGGAGATTAGATCAGCCGCGCAAAGTATTACAGTTGCAGTGAACTTTCTGTTTACTTTCATTGTTGCTCAAACTTTTCTTAGTATGTTATGTCATTTCAAGTATGGAACTTTCTTCTTTTTTGGAGGTTGGGTGGTTATGATGACAGTGTTTGTTTATTTTCTGTTACCAGAAACCAAGAATGTTCCAATTGAGCAAATGGATAGGGTTTGGAGAGAACATTTTTTTTGGAAAAAAATTGTTGGAGACAAGATTGAAGGCAAACACACTGTGGTGCCTTAA
Protein sequence

>Msa0393520

MAVVELPIASNGRGYNGKMTPIVILSCMVAATGGIIFGYDIGISGGVTSMVPFLEKFFPDVYTKMKQDNKISNYCKFDSQLLTTFTSSLYIAGLLASFFASSITRAFGRKPSILVGGAAFLIGAALGGAALNIYMLILGRVLLGVGIGFANQAVPLYLSEMALPRYRGAINNGFQLCVGIGVLSANLINFGTEKIKDGWGWRISLAMAAVPALILTLGAFCLPETPNSIIQNSKNHQKAKLMLQSIRGTHDVQQEFEDLIEASIMSNSIKHPFKNILQRKYRPQLVMAIAIPFFQQFTGINVISFYAPILFLTIGLGESASLLSAVMVGIVGTTSTFISMLIVDKLGRRVLFISGGIQMFFSQILIGSIMAAQLGDHGEISKKYAYLILVLICIYVAGFAWSWGPLGWLVPSEIFPLEIRSAAQSITVAVNFLFTFIVAQTFLSMLCHFKYGTFFFFGGWVVMMTVFVYFLLPETKNVPIEQMDRVWREHFFWKKIVGDKIEGKHTVVP*