AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0462140

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0462140 MtrunA17_Chr3g0078971 98.821 509 6 0 1 509 1 509 0.0 1018
Msa0462140 MtrunA17_Chr3g0078991 76.289 485 114 1 16 499 16 500 0.0 765
Msa0462140 MtrunA17_Chr4g0065311 59.213 483 194 3 15 497 13 492 0.0 603
Msa0462140 MtrunA17_Chr5g0394341 57.230 491 206 4 15 502 14 503 0.0 600
Msa0462140 MtrunA17_Chr5g0437021 60.282 496 191 4 9 501 9 501 0.0 599
Msa0462140 MtrunA17_Chr5g0445601 58.436 486 199 3 15 500 19 501 0.0 594
Msa0462140 MtrunA17_Chr7g0257631 60.041 483 190 3 15 497 53 532 0.0 594
Msa0462140 MtrunA17_Chr1g0164871 58.502 494 199 4 13 503 13 503 0.0 587
Msa0462140 MtrunA17_Chr1g0164851 58.859 491 196 4 13 500 13 500 0.0 585
Msa0462140 MtrunA17_Chr4g0048411 59.438 498 196 3 13 505 13 509 0.0 577
Msa0462140 MtrunA17_Chr4g0065324 55.967 486 211 3 15 500 21 503 0.0 576
Msa0462140 MtrunA17_Chr5g0417611 57.715 499 204 4 8 500 6 503 0.0 562
Msa0462140 MtrunA17_Chr5g0420841 55.645 496 215 3 15 506 13 507 0.0 561
Msa0462140 MtrunA17_Chr1g0205691 56.400 500 211 6 11 505 10 507 0.0 556
Msa0462140 MtrunA17_Chr3g0128081 57.026 491 206 3 11 497 10 499 0.0 553
Msa0462140 MtrunA17_Chr1g0205681 53.306 484 222 4 15 495 15 497 0.0 549
Msa0462140 MtrunA17_Chr1g0205671 53.209 483 223 3 15 495 15 496 0.0 545
Msa0462140 MtrunA17_Chr3g0115741 52.515 497 226 7 17 509 20 510 0.0 540
Msa0462140 MtrunA17_Chr3g0115751 52.096 501 232 6 1 497 6 502 0.0 539
Msa0462140 MtrunA17_Chr4g0048051 56.471 510 213 3 1 502 1 509 0.0 538
Msa0462140 MtrunA17_Chr3g0115721 51.904 499 232 6 8 502 8 502 0.0 537
Msa0462140 MtrunA17_Chr8g0390261 52.941 493 229 3 15 506 18 508 0.0 536
Msa0462140 MtrunA17_Chr6g0486681 52.941 493 229 3 15 506 18 508 0.0 533
Msa0462140 MtrunA17_Chr6g0486671 52.941 493 229 3 15 506 18 508 0.0 533
Msa0462140 MtrunA17_Chr3g0115781 52.333 493 226 7 18 505 20 508 0.0 530
Msa0462140 MtrunA17_Chr3g0115711 51.509 497 228 6 16 509 16 502 0.0 524
Msa0462140 MtrunA17_Chr3g0085971 53.924 497 223 4 15 507 13 507 0.0 523
Msa0462140 MtrunA17_Chr8g0390141 52.033 492 233 3 15 505 18 507 8.45e-179 512
Msa0462140 MtrunA17_Chr3g0128171 55.654 451 194 3 50 495 1 450 4.48e-174 498
Msa0462140 MtrunA17_Chr3g0078791 53.196 438 178 4 68 502 16 429 8.84e-160 461
Msa0462140 MtrunA17_Chr3g0115731 47.036 506 223 10 8 502 8 479 4.03e-159 461
Msa0462140 MtrunA17_Chr4g0065351 54.678 342 153 2 161 502 1 340 3.14e-138 403
Msa0462140 MtrunA17_Chr3g0115771 37.261 314 149 8 151 461 5 273 3.37e-62 204
Msa0462140 MtrunA17_Chr6g0485661 29.194 459 293 10 28 476 63 499 6.66e-56 195
Msa0462140 MtrunA17_Chr4g0034681 27.092 502 321 10 27 505 34 513 3.78e-54 190
Msa0462140 MtrunA17_Chr3g0144361 28.184 479 301 10 27 484 32 488 3.94e-53 187
Msa0462140 MtrunA17_Chr8g0390521 27.016 496 321 10 10 489 3 473 4.00e-53 187
Msa0462140 MtrunA17_Chr8g0373531 29.328 491 302 12 28 496 24 491 1.24e-51 183
Msa0462140 MtrunA17_Chr4g0021771 25.996 477 318 10 24 490 55 506 1.08e-50 181
Msa0462140 MtrunA17_Chr5g0432581 27.733 494 314 10 18 490 14 485 1.41e-49 177
Msa0462140 MtrunA17_Chr4g0036021 26.283 487 317 10 27 495 31 493 3.36e-49 177
Msa0462140 MtrunA17_Chr4g0065341 55.405 148 63 2 7 152 9 155 3.04e-48 164
Msa0462140 MtrunA17_Chr2g0282031 27.883 477 306 12 24 489 53 502 8.58e-48 173
Msa0462140 MtrunA17_Chr1g0213611 27.607 489 314 12 20 495 75 536 1.29e-47 173
Msa0462140 MtrunA17_Chr7g0214451 27.010 485 318 12 20 495 30 487 1.10e-45 167
Msa0462140 MtrunA17_Chr1g0213631 28.608 395 268 9 103 490 48 435 1.08e-44 163
Msa0462140 MtrunA17_Chr4g0039651 28.452 478 299 10 24 484 46 497 1.70e-44 163
Msa0462140 MtrunA17_Chr5g0446681 57.812 128 54 0 375 502 157 284 1.52e-41 150
Msa0462140 MtrunA17_Chr5g0446681 43.646 181 66 2 13 193 12 156 3.60e-35 133
Msa0462140 MtrunA17_Chr7g0250881 25.780 481 323 11 6 485 53 500 2.15e-40 152
Msa0462140 MtrunA17_Chr4g0066581 27.083 480 313 11 8 484 38 483 8.01e-40 150
Msa0462140 MtrunA17_Chr6g0457781 26.763 482 317 10 6 485 93 540 9.29e-40 151
Msa0462140 MtrunA17_Chr5g0403831 27.333 450 293 11 65 490 59 498 1.27e-39 150
Msa0462140 MtrunA17_Chr4g0032021 27.869 488 294 11 23 484 96 551 5.87e-38 146
Msa0462140 MtrunA17_Chr8g0373181 26.427 473 300 11 23 484 47 482 2.85e-37 143
Msa0462140 MtrunA17_Chr7g0273281 26.518 494 308 11 8 484 37 492 5.52e-37 142
Msa0462140 MtrunA17_Chr2g0286721 26.240 484 312 12 8 484 35 480 2.08e-35 138
Msa0462140 MtrunA17_Chr1g0155221 25.678 479 316 10 18 488 43 489 3.90e-35 137
Msa0462140 MtrunA17_Chr7g0228781 40.984 183 72 3 6 152 21 203 4.72e-34 127
Msa0462140 MtrunA17_Chr2g0303701 31.268 339 203 9 20 351 23 338 4.98e-33 132
Msa0462140 MtrunA17_Chr2g0303731 30.814 344 205 9 20 353 23 343 1.57e-32 131
Msa0462140 MtrunA17_Chr8g0373191 25.910 467 290 11 23 484 39 454 1.97e-32 129
Msa0462140 MtrunA17_Chr8g0376631 29.825 342 211 8 20 353 23 343 3.82e-32 130
Msa0462140 MtrunA17_Chr4g0004821 26.316 399 266 8 95 484 90 469 1.61e-31 127
Msa0462140 MtrunA17_Chr7g0259471 25.935 428 295 9 62 484 60 470 4.18e-31 125
Msa0462140 MtrunA17_Chr2g0290181 28.232 379 234 10 20 381 24 381 5.63e-31 126
Msa0462140 MtrunA17_Chr2g0290181 32.075 106 71 1 387 491 455 560 4.37e-11 65.5
Msa0462140 MtrunA17_Chr6g0486021 24.490 392 284 6 94 484 103 483 5.68e-29 119
Msa0462140 MtrunA17_Chr8g0376611 32.296 257 162 6 103 351 22 274 1.10e-28 119
Msa0462140 MtrunA17_Chr3g0119401 23.881 402 292 9 88 485 139 530 1.81e-28 118
Msa0462140 MtrunA17_Chr8g0376601 27.616 344 216 10 18 351 21 341 6.68e-28 117
Msa0462140 MtrunA17_Chr3g0115761 51.456 103 49 1 50 152 1 102 9.40e-28 107
Msa0462140 MtrunA17_Chr7g0259221 26.812 414 264 13 85 484 84 472 9.56e-27 113
Msa0462140 MtrunA17_Chr3g0121674 26.599 297 198 8 205 490 2 289 8.15e-24 101
Msa0462140 MtrunA17_Chr2g0290161 28.866 291 165 8 99 378 19 278 3.69e-23 102
Msa0462140 MtrunA17_Chr5g0434231 30.337 178 97 2 82 259 4 154 4.83e-19 84.0
Msa0462140 MtrunA17_Chr7g0273261 30.000 210 138 4 276 484 33 234 6.14e-19 86.7
Msa0462140 MtrunA17_Chr5g0407441 27.386 241 152 6 23 261 4 223 2.81e-17 85.1
Msa0462140 MtrunA17_Chr3g0146061 31.214 173 116 3 91 262 54 224 8.02e-17 83.6
Msa0462140 MtrunA17_Chr3g0144261 30.928 194 127 4 74 262 31 222 2.76e-16 82.0
Msa0462140 MtrunA17_Chr8g0370141 26.291 213 147 4 76 280 39 249 8.80e-15 76.3
Msa0462140 MtrunA17_Chr5g0419321 26.590 173 124 3 90 261 81 251 1.83e-14 76.3
Msa0462140 MtrunA17_Chr5g0404191 24.904 261 166 6 23 281 50 282 9.73e-14 72.0
Msa0462140 MtrunA17_Chr1g0211861 46.575 73 37 1 338 408 21 93 8.74e-13 65.1
Msa0462140 MtrunA17_Chr8g0370151 28.125 224 143 4 270 481 125 342 4.36e-12 67.8
Msa0462140 MtrunA17_Chr5g0434251 27.564 156 101 3 357 500 1 156 9.90e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0462140 AT5G26340.1 58.990 495 199 4 9 500 9 502 0.0 613
Msa0462140 AT5G61520.1 61.837 490 178 4 17 500 18 504 0.0 612
Msa0462140 AT4G02050.2 58.144 485 200 3 15 499 19 500 0.0 605
Msa0462140 AT4G02050.1 58.144 485 200 3 15 499 19 500 0.0 605
Msa0462140 AT3G19930.1 60.612 490 189 3 13 500 13 500 0.0 599
Msa0462140 AT3G19930.2 60.612 490 189 3 13 500 13 500 0.0 599
Msa0462140 AT1G11260.1 58.586 495 201 2 8 499 8 501 0.0 598
Msa0462140 AT3G19940.1 58.264 484 198 3 19 500 21 502 0.0 594
Msa0462140 AT5G23270.1 58.776 490 198 3 9 495 10 498 0.0 587
Msa0462140 AT1G50310.1 57.526 485 201 4 19 500 21 503 0.0 583
Msa0462140 AT5G61520.2 60.730 466 174 4 49 508 2 464 0.0 568
Msa0462140 AT4G21480.1 57.455 503 208 3 1 500 1 500 0.0 566
Msa0462140 AT1G34580.1 51.703 499 229 7 4 495 6 499 0.0 531
Msa0462140 AT1G77210.2 50.920 489 237 3 15 502 18 504 0.0 523
Msa0462140 AT1G77210.1 50.920 489 237 3 15 502 18 504 0.0 523
Msa0462140 AT5G26250.1 49.307 505 247 6 1 502 1 499 4.03e-173 498
Msa0462140 AT1G34580.2 51.435 453 209 6 50 495 1 449 9.23e-168 482
Msa0462140 AT1G07340.1 51.195 502 238 6 1 499 1 498 1.74e-166 480
Msa0462140 AT3G05960.1 47.228 487 253 4 10 495 8 491 1.93e-164 476
Msa0462140 AT1G50310.2 56.534 352 148 4 152 500 11 360 1.00e-144 420
Msa0462140 AT1G77210.3 50.284 352 172 3 152 502 6 355 7.80e-126 371
Msa0462140 AT4G36670.1 30.435 506 294 15 25 505 18 490 3.57e-58 201
Msa0462140 AT2G18480.1 29.263 475 285 12 37 487 36 483 8.85e-56 194
Msa0462140 AT3G18830.1 28.515 505 314 12 27 509 40 519 2.75e-55 194
Msa0462140 AT2G16120.1 28.893 488 308 8 27 495 30 497 3.61e-54 190
Msa0462140 AT2G16130.1 28.657 499 317 8 16 495 19 497 6.50e-54 190
Msa0462140 AT3G05165.3 26.793 474 306 11 16 484 23 460 2.56e-44 162
Msa0462140 AT3G05165.2 26.793 474 306 11 16 484 23 460 2.56e-44 162
Msa0462140 AT3G05165.1 26.793 474 306 11 16 484 23 460 2.56e-44 162
Msa0462140 AT5G27360.1 25.620 484 319 8 6 484 18 465 1.79e-43 160
Msa0462140 AT5G27360.3 25.620 484 319 8 6 484 66 513 5.96e-43 160
Msa0462140 AT5G27350.1 26.971 482 315 11 6 484 14 461 7.88e-43 159
Msa0462140 AT5G17010.1 28.866 485 288 13 24 484 48 499 2.98e-42 158
Msa0462140 AT5G17010.3 28.866 485 288 13 24 484 48 499 2.98e-42 158
Msa0462140 AT5G17010.4 28.866 485 288 13 24 484 48 499 2.98e-42 158
Msa0462140 AT3G05150.1 26.598 485 314 10 6 484 18 466 5.54e-41 154
Msa0462140 AT3G05150.3 26.598 485 314 10 6 484 18 466 5.54e-41 154
Msa0462140 AT3G05150.2 26.200 500 318 11 6 490 18 481 6.26e-41 154
Msa0462140 AT2G20780.1 25.208 480 328 11 11 484 43 497 1.51e-40 153
Msa0462140 AT2G43330.1 25.367 477 318 9 27 492 35 484 2.03e-40 153
Msa0462140 AT5G27360.2 27.778 360 239 5 130 484 18 361 1.39e-39 147
Msa0462140 AT5G27360.5 27.778 360 239 5 130 484 18 361 1.39e-39 147
Msa0462140 AT5G16150.2 25.104 482 323 11 6 484 93 539 2.76e-39 150
Msa0462140 AT5G16150.1 25.104 482 323 11 6 484 93 539 2.76e-39 150
Msa0462140 AT5G16150.3 25.104 482 323 11 6 484 93 539 2.76e-39 150
Msa0462140 AT1G08900.5 26.601 406 275 8 85 484 25 413 3.01e-39 148
Msa0462140 AT1G08900.3 26.601 406 275 8 85 484 59 447 4.24e-39 148
Msa0462140 AT1G08900.1 26.601 406 275 8 85 484 67 455 4.88e-39 148
Msa0462140 AT1G08900.2 26.601 406 275 8 85 484 67 455 4.88e-39 148
Msa0462140 AT5G59250.1 27.743 483 301 10 23 484 98 553 6.34e-39 149
Msa0462140 AT1G08930.1 25.684 475 306 11 18 484 53 488 6.73e-39 148
Msa0462140 AT1G08930.2 25.684 475 306 11 18 484 53 488 6.73e-39 148
Msa0462140 AT3G05160.1 25.424 472 315 10 16 484 14 451 7.99e-39 147
Msa0462140 AT1G08890.1 27.407 405 275 8 85 485 69 458 1.00e-38 147
Msa0462140 AT2G20780.2 26.588 425 295 10 66 484 26 439 1.84e-38 146
Msa0462140 AT3G03090.1 27.848 474 293 11 31 484 55 499 2.66e-38 147
Msa0462140 AT3G05160.3 26.485 404 282 7 83 484 12 402 3.02e-38 145
Msa0462140 AT3G05160.2 26.485 404 282 7 83 484 12 402 3.02e-38 145
Msa0462140 AT1G75220.1 26.625 477 313 11 18 488 42 487 6.30e-38 145
Msa0462140 AT5G18840.1 27.686 484 302 14 16 490 37 481 1.29e-37 144
Msa0462140 AT3G05155.1 25.424 472 315 11 16 485 20 456 1.57e-37 144
Msa0462140 AT3G05165.6 26.174 447 289 11 16 457 23 433 3.24e-37 144
Msa0462140 AT1G54730.2 26.767 467 289 9 29 484 38 462 6.23e-37 142
Msa0462140 AT3G05165.4 26.747 415 265 10 16 426 23 402 1.52e-36 141
Msa0462140 AT3G05165.5 26.747 415 265 10 16 426 23 402 1.52e-36 141
Msa0462140 AT3G05400.1 25.581 473 313 12 16 484 19 456 2.06e-36 140
Msa0462140 AT2G48020.2 26.423 492 317 10 2 486 7 460 9.73e-36 139
Msa0462140 AT2G48020.1 26.423 492 317 10 2 486 7 460 9.73e-36 139
Msa0462140 AT1G19450.1 27.766 479 305 13 18 488 43 488 1.19e-34 136
Msa0462140 AT3G05400.2 24.947 473 296 13 16 484 19 436 5.10e-34 134
Msa0462140 AT4G04750.1 26.667 480 312 13 16 490 30 474 5.17e-33 131
Msa0462140 AT4G04750.2 26.667 480 312 13 16 490 30 474 5.17e-33 131
Msa0462140 AT4G04750.3 27.073 410 282 9 85 490 122 518 1.09e-32 131
Msa0462140 AT4G04760.1 25.367 477 308 11 24 490 32 470 7.46e-32 128
Msa0462140 AT1G30220.1 28.070 342 217 8 20 353 25 345 1.18e-31 129
Msa0462140 AT1G54730.3 26.588 425 259 9 29 442 38 420 1.89e-31 126
Msa0462140 AT1G05030.1 25.108 462 308 12 29 484 85 514 2.43e-31 127
Msa0462140 AT4G04760.3 25.783 415 282 8 85 490 14 411 3.26e-31 125
Msa0462140 AT1G05030.2 25.304 411 290 9 79 484 64 462 3.58e-31 126
Msa0462140 AT1G08900.4 25.824 364 247 8 85 442 67 413 4.37e-31 125
Msa0462140 AT1G54730.5 25.482 467 274 10 29 484 38 441 1.34e-30 124
Msa0462140 AT4G04760.2 25.572 481 297 13 24 489 32 466 5.55e-30 122
Msa0462140 AT1G08920.1 22.410 473 324 9 18 484 27 462 1.12e-29 122
Msa0462140 AT1G67300.2 24.755 408 264 8 95 484 105 487 1.56e-29 122
Msa0462140 AT5G27360.4 24.048 420 278 8 6 420 18 401 2.78e-29 120
Msa0462140 AT1G67300.1 24.510 408 264 8 95 484 105 486 3.34e-29 120
Msa0462140 AT1G67300.3 24.510 408 264 8 95 484 105 486 3.34e-29 120
Msa0462140 AT1G08920.2 22.917 480 320 11 18 484 27 469 3.44e-29 120
Msa0462140 AT2G35740.1 28.205 351 217 10 21 360 24 350 6.87e-29 120
Msa0462140 AT2G35740.1 31.532 111 75 1 382 491 453 563 2.36e-11 66.6
Msa0462140 AT4G16480.2 28.732 355 212 10 20 360 24 351 1.20e-28 120
Msa0462140 AT4G16480.2 27.083 144 96 3 352 486 416 559 4.29e-11 65.9
Msa0462140 AT4G16480.3 28.732 355 212 10 20 360 24 351 1.20e-28 120
Msa0462140 AT4G16480.3 27.083 144 96 3 352 486 416 559 4.29e-11 65.9
Msa0462140 AT4G16480.1 28.732 355 212 10 20 360 24 351 1.20e-28 120
Msa0462140 AT4G16480.1 27.083 144 96 3 352 486 416 559 4.29e-11 65.9
Msa0462140 AT1G67300.6 24.719 356 225 7 95 433 105 434 5.22e-28 116
Msa0462140 AT1G67300.7 24.719 356 225 7 95 433 105 434 5.22e-28 116
Msa0462140 AT1G67300.4 25.000 348 218 7 95 425 105 426 3.22e-27 114
Msa0462140 AT1G67300.5 25.000 348 218 7 95 425 105 426 3.22e-27 114
Msa0462140 AT1G54730.4 25.176 425 244 10 29 442 38 399 2.55e-25 108
Msa0462140 AT1G79820.2 25.616 406 260 15 95 484 108 487 3.67e-25 108
Msa0462140 AT1G79820.1 25.616 406 260 15 95 484 108 487 3.67e-25 108
Msa0462140 AT1G08920.3 21.609 435 298 9 18 446 27 424 1.94e-24 106
Msa0462140 AT1G54730.9 26.065 399 238 10 29 414 38 392 3.23e-24 105
Msa0462140 AT1G54730.7 26.065 399 238 10 29 414 38 392 3.23e-24 105
Msa0462140 AT3G05155.2 24.706 340 220 10 16 353 20 325 3.41e-24 103
Msa0462140 AT5G17010.2 24.283 523 255 17 7 484 10 436 7.50e-22 98.6
Msa0462140 AT3G20460.1 22.469 405 293 8 85 484 95 483 9.29e-21 95.5
Msa0462140 AT1G54730.11 26.786 336 195 8 29 353 38 333 1.11e-20 93.6
Msa0462140 AT1G79820.4 24.566 346 236 11 95 433 108 435 1.21e-20 95.1
Msa0462140 AT2G48020.3 25.606 371 237 9 2 368 7 342 8.18e-19 88.6
Msa0462140 AT1G54730.8 24.561 399 223 11 29 414 38 371 2.32e-18 87.4
Msa0462140 AT2G48020.4 25.600 375 237 10 2 372 7 343 3.87e-18 86.7
Msa0462140 AT3G51490.2 26.556 241 156 7 23 262 4 224 5.34e-18 87.8
Msa0462140 AT3G51490.2 26.271 236 152 7 261 481 486 714 5.50e-12 68.9
Msa0462140 AT3G51490.1 26.556 241 156 7 23 262 4 224 5.63e-18 87.8
Msa0462140 AT1G54730.10 25.559 313 185 7 29 330 38 313 1.85e-17 84.0
Msa0462140 AT1G54730.6 25.559 313 185 7 29 330 38 313 1.85e-17 84.0
Msa0462140 AT3G51490.3 29.480 173 119 3 91 262 4 174 2.92e-17 85.5
Msa0462140 AT3G51490.3 26.271 236 152 7 261 481 436 664 5.46e-12 68.9
Msa0462140 AT1G79820.3 22.333 403 229 12 95 484 108 439 1.63e-15 79.3
Msa0462140 AT1G20840.2 31.056 161 108 3 103 262 64 222 3.40e-15 79.0
Msa0462140 AT1G20840.1 31.056 161 108 3 103 262 64 222 3.40e-15 79.0
Msa0462140 AT4G35300.9 30.058 173 118 3 91 262 54 224 6.29e-13 72.0
Msa0462140 AT4G35300.2 30.058 173 118 3 91 262 54 224 6.29e-13 72.0
Msa0462140 AT4G35300.3 30.058 173 118 3 91 262 54 224 6.29e-13 72.0
Msa0462140 AT4G35300.4 30.058 173 118 3 91 262 54 224 6.98e-13 71.6
Msa0462140 AT4G35300.8 30.058 173 118 3 91 262 54 224 6.98e-13 71.6
Msa0462140 AT4G35300.6 30.058 173 118 3 91 262 54 224 6.98e-13 71.6
Msa0462140 AT4G35300.11 30.058 173 118 3 91 262 54 224 6.98e-13 71.6
Msa0462140 AT4G35300.1 30.058 173 118 3 91 262 54 224 6.98e-13 71.6
Msa0462140 AT4G35300.10 30.058 173 118 3 91 262 54 224 6.98e-13 71.6
Msa0462140 AT4G35300.7 30.058 173 118 3 91 262 54 224 6.98e-13 71.6

Find 91 sgRNAs with CRISPR-Local

Find 227 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTATGCTGTTTGGTGTTTC+TGG 0.080373 3_3:-60898218 None:intergenic
ATTGGAACATTCTTGGTTTC+TGG 0.128771 3_3:-60898968 None:intergenic
AACATCTTGTGTGCCTCTTA+TGG 0.217950 3_3:-60898285 None:intergenic
GCCATTTCTGATAGATATAA+TGG 0.247787 3_3:-60898014 None:intergenic
CTTTGTAAGATATTCTTAAA+TGG 0.251429 3_3:-60898365 None:intergenic
GGTTATGATATAGGAATTTC+AGG 0.255337 3_3:+60895496 Msa0462140:CDS
ATACTTGGTCGTGTTCTTCT+TGG 0.258509 3_3:+60896660 Msa0462140:CDS
AAATAGGATTGGAGCATAAA+AGG 0.275402 3_3:-60898462 None:intergenic
ATTATCTTTGGTTATGATAT+AGG 0.280249 3_3:+60895487 Msa0462140:CDS
TGGAATTGGCTTTGCTAATC+AGG 0.280534 3_3:+60896686 Msa0462140:CDS
GCCACTGGAGGCATTATCTT+TGG 0.284215 3_3:+60895475 Msa0462140:CDS
GGTGGTGCTGCATTCCTTAT+TGG 0.287192 3_3:+60896597 Msa0462140:CDS
TTGCTCAATTGGAACATTCT+TGG 0.300336 3_3:-60898975 None:intergenic
ACCCTATCCATTTGCTCAAT+TGG 0.305882 3_3:-60898986 None:intergenic
CTTGTTGTCTTGTTTCATCT+TGG 0.317999 3_3:-60896439 None:intergenic
ACATGATACTTGCTTCAATA+AGG 0.321693 3_3:-60898325 None:intergenic
GTTCTTCTTGGAGTTGGAAT+TGG 0.324453 3_3:+60896672 Msa0462140:CDS
ATGCTATGTCATTTCAAGTA+TGG 0.336698 3_3:+60898884 Msa0462140:CDS
CGCCGGATTTGCTTGGTCAT+GGG 0.341847 3_3:+60898739 Msa0462140:CDS
CCAGCTTTAATCCTCACTTT+AGG 0.346251 3_3:+60898182 Msa0462140:CDS
TATTGTGATTCTCTCTTGTA+TGG 0.347026 3_3:+60895447 Msa0462140:CDS
TCTTGTATGGTGGCTGCCAC+TGG 0.347170 3_3:+60895460 Msa0462140:CDS
AAGCAAAGAAAGATGCTAAA+AGG 0.350210 3_3:-60896530 None:intergenic
TTGATTGCTCCTCTATATCT+TGG 0.355418 3_3:-60898041 None:intergenic
CCTCTTCCATTGCTTGCAAT+TGG 0.356504 3_3:-60895403 None:intergenic
CATTGATTCCTGTGAATTGT+TGG 0.356994 3_3:-60898433 None:intergenic
TTCATCTTGGTGTATACATC+TGG 0.359272 3_3:-60896426 None:intergenic
TTCTTCTCACAAATTCTAAT+AGG 0.359757 3_3:+60898629 Msa0462140:CDS
CACCAAGAGCTGCTCCAATA+AGG 0.370888 3_3:-60896611 None:intergenic
TTATGCTGTTTGGTGTTTCT+GGG 0.371737 3_3:-60898217 None:intergenic
TTCCAGCTTTGTGTTGGAAT+TGG 0.376617 3_3:+60898071 Msa0462140:CDS
TTCCTTATTGGAGCAGCTCT+TGG 0.384601 3_3:+60896609 Msa0462140:CDS
TTGAGCAAATGGATAGGGTT+TGG 0.386241 3_3:+60898990 Msa0462140:CDS
ATATAGACCTCAACTTGTTA+TGG 0.392956 3_3:+60898391 Msa0462140:CDS
TCGCCGGATTTGCTTGGTCA+TGG 0.403869 3_3:+60898738 Msa0462140:CDS
GCACCACCTACAAGAATTGA+TGG 0.406112 3_3:-60896582 None:intergenic
GCAGTTATGGTAGGGATTGT+AGG 0.415489 3_3:+60898524 Msa0462140:CDS
TCAGCAAATTTAATCAACTT+TGG 0.419401 3_3:+60898101 Msa0462140:CDS
GAATGTTCCAATTGAGCAAA+TGG 0.420157 3_3:+60898979 Msa0462140:CDS
AGAAAAGATCAAAGACGGTT+GGG 0.422002 3_3:+60898127 Msa0462140:CDS
CCCATTATATCTATCAGAAA+TGG 0.423439 3_3:+60898013 Msa0462140:CDS
TCATCAATCACAAGAGCCTT+TGG 0.425277 3_3:+60896552 Msa0462140:CDS
GGTCGTGTTCTTCTTGGAGT+TGG 0.425536 3_3:+60896666 Msa0462140:CDS
AATTCTAATAGGAAGTATAA+TGG 0.436111 3_3:+60898640 Msa0462140:CDS
TATGGATTGCAGCATTAACT+TGG 0.460637 3_3:-60898267 None:intergenic
CTTATTGGAGCAGCTCTTGG+TGG 0.464561 3_3:+60896612 Msa0462140:CDS
CTAGGAACCAACCATCCTAA+TGG 0.475289 3_3:-60898764 None:intergenic
CCATTTCTGATAGATATAAT+GGG 0.482018 3_3:-60898013 None:intergenic
CACCAATTCCAACACAAAGC+TGG 0.486028 3_3:-60898073 None:intergenic
TTTACGTCGCCGGATTTGCT+TGG 0.496487 3_3:+60898732 Msa0462140:CDS
TCCAATTGAGCAAATGGATA+GGG 0.497217 3_3:+60898985 Msa0462140:CDS
ATTGTTGGAGACAAGATTGA+AGG 0.501127 3_3:+60899037 Msa0462140:CDS
TGCAGGTGGTGTAACATCAA+TGG 0.504221 3_3:+60896380 Msa0462140:intron
ATACAAGAGAGAATCACAAT+AGG 0.504849 3_3:-60895445 None:intergenic
GTGATGAAGTGAATGTTGTT+AGG 0.505701 3_3:-60896494 None:intergenic
TTAATGCTGCAATCCATAAG+AGG 0.508288 3_3:+60898272 Msa0462140:CDS
ATTGGCTTCCAGCTTTGTGT+TGG 0.514675 3_3:+60898065 Msa0462140:CDS
GCCGGATTTGCTTGGTCATG+GGG 0.519836 3_3:+60898740 Msa0462140:CDS
AGTATAATGGCAGCACAACT+TGG 0.520104 3_3:+60898653 Msa0462140:CDS
ACTTCATCACTATATATAGC+TGG 0.520261 3_3:+60896507 Msa0462140:CDS
ATGGCACTTCCAAGATATAG+AGG 0.524996 3_3:+60898032 Msa0462140:CDS
AATATATACATGCTAATACT+TGG 0.530434 3_3:+60896645 Msa0462140:CDS
GCAGCACAACTTGGTGATCA+TGG 0.536187 3_3:+60898662 Msa0462140:CDS
AGATGTTCAACAAGAATTCG+AGG 0.542311 3_3:+60898301 Msa0462140:CDS
CAGAAAAGATCAAAGACGGT+TGG 0.543560 3_3:+60898126 Msa0462140:CDS
GAGCTACCAATTGCAAGCAA+TGG 0.546840 3_3:+60895397 Msa0462140:CDS
CGCAAACCATCAATTCTTGT+AGG 0.548548 3_3:+60896576 Msa0462140:CDS
CCTAAAGTGAGGATTAAAGC+TGG 0.553920 3_3:-60898182 None:intergenic
TAAAGCTGGAACTGCTGCCA+TGG 0.554550 3_3:-60898168 None:intergenic
AATTGATGGTTTGCGACCAA+AGG 0.563264 3_3:-60896568 None:intergenic
GAAAAGATCAAAGACGGTTG+GGG 0.563993 3_3:+60898128 Msa0462140:CDS
TTGATATGCATTTACGTCGC+CGG 0.567899 3_3:+60898722 Msa0462140:CDS
AAGTGAATGTTGTTAGGAGT+TGG 0.571646 3_3:-60896488 None:intergenic
TGTGATTCTCTCTTGTATGG+TGG 0.579802 3_3:+60895450 Msa0462140:CDS
TTCCAATTGAGCAAATGGAT+AGG 0.581303 3_3:+60898984 Msa0462140:CDS
CCAATTGCAAGCAATGGAAG+AGG 0.588796 3_3:+60895403 Msa0462140:CDS
ATGCTCATAGTTGATAAACT+AGG 0.590703 3_3:+60898569 Msa0462140:CDS
AGATCAAAGACGGTTGGGGA+TGG 0.591219 3_3:+60898132 Msa0462140:CDS
TGTATGGTGGCTGCCACTGG+AGG 0.591273 3_3:+60895463 Msa0462140:CDS
GGTACAGAAAAGATCAAAGA+CGG 0.591721 3_3:+60898122 Msa0462140:CDS
AGCACTTTCACCTAATCCAA+TGG 0.595224 3_3:-60898489 None:intergenic
GCTGCTGATCTAATCTCCAA+TGG 0.597437 3_3:-60898797 None:intergenic
AGCAATGGAAGAGGATACAA+TGG 0.603683 3_3:+60895412 Msa0462140:CDS
GCTATTGCCATAACAAGTTG+AGG 0.605625 3_3:-60898398 None:intergenic
TATAGAGGAGCAATCAACAT+TGG 0.606491 3_3:+60898047 Msa0462140:CDS
ATGGCGAATTTCTCTAGCCA+TGG 0.615608 3_3:+60898151 Msa0462140:CDS
AAACCATCAATTCTTGTAGG+TGG 0.619483 3_3:+60896579 Msa0462140:CDS
CCGGATTTGCTTGGTCATGG+GGG 0.655288 3_3:+60898741 Msa0462140:CDS
ACCAAAGATAATGCCTCCAG+TGG 0.655294 3_3:-60895476 None:intergenic
TGCTGTTTGGTGTTTCTGGG+AGG 0.658455 3_3:-60898214 None:intergenic
GATTGAAGGCAAACAAACTG+TGG 0.667334 3_3:+60899051 Msa0462140:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATCTATAATAACTATATAA+GGG - chr3_3:60895827-60895846 None:intergenic 10.0%
!!! TTATTAATTTATGATTTTCT+TGG + chr3_3:60897067-60897086 Msa0462140:intron 10.0%
!!! TATTAATTTATGATTTTCTT+GGG + chr3_3:60897068-60897087 Msa0462140:intron 10.0%
!!! TAATAAGATAATAATTTTTC+GGG - chr3_3:60897116-60897135 None:intergenic 10.0%
!! AAACTCTTTAAATTAATATT+CGG - chr3_3:60897220-60897239 None:intergenic 10.0%
!! TAAATATATAAGTTAATACA+TGG + chr3_3:60897318-60897337 Msa0462140:intron 10.0%
!!! AATATTTTTTTTTTTTTGGT+TGG + chr3_3:60897448-60897467 Msa0462140:intron 10.0%
!!! AAATTTTAAGATAGTATTAA+AGG - chr3_3:60897755-60897774 None:intergenic 10.0%
!! TTTAATACTATCTTAAAATT+TGG + chr3_3:60897754-60897773 Msa0462140:intron 10.0%
!! GTATCTATAATAACTATATA+AGG - chr3_3:60895828-60895847 None:intergenic 15.0%
!!! ATCTACAGTTTTTTTTTTAT+AGG - chr3_3:60895988-60896007 None:intergenic 15.0%
!!! GACTTCAAATTTAAAATTTA+AGG - chr3_3:60896130-60896149 None:intergenic 15.0%
!!! ATTTAAAGATTATTTGGTTT+TGG - chr3_3:60896161-60896180 None:intergenic 15.0%
!! AAAAAGAGAAAAAAAATTGA+AGG - chr3_3:60896361-60896380 None:intergenic 15.0%
!! AATTAGAAAAACATTGTAAT+TGG - chr3_3:60896724-60896743 None:intergenic 15.0%
!! CTCTATAAATTAATAATGTT+AGG + chr3_3:60896755-60896774 Msa0462140:intron 15.0%
!! TCTAAATTAATAAATTTCTC+CGG - chr3_3:60896782-60896801 None:intergenic 15.0%
!!! AGTTTTTCAATTTTTTACAT+TGG + chr3_3:60897144-60897163 Msa0462140:intron 15.0%
!!! TCTAAAATAATAAATTTGTC+CGG - chr3_3:60897182-60897201 None:intergenic 15.0%
!!! TTTGATACTTTTTTTTTTGA+GGG - chr3_3:60897425-60897444 None:intergenic 15.0%
!!! TTTTGATACTTTTTTTTTTG+AGG - chr3_3:60897426-60897445 None:intergenic 15.0%
!!! TTTTTTTGGAAAAAAATTGT+TGG + chr3_3:60899022-60899041 Msa0462140:CDS 15.0%
!! ATTATCTTTGGTTATGATAT+AGG + chr3_3:60895487-60895506 Msa0462140:CDS 20.0%
!!! CTTAAATCTTTATTTGATTG+TGG - chr3_3:60895597-60895616 None:intergenic 20.0%
!! ATATAAGGGATCAAAAATAT+TGG - chr3_3:60895813-60895832 None:intergenic 20.0%
!! ACTATACAAAATAGATGATA+TGG + chr3_3:60896058-60896077 Msa0462140:intron 20.0%
!! AAAATTCGTTGAAATTACAT+GGG + chr3_3:60896095-60896114 Msa0462140:intron 20.0%
!! CTCGTAATTTAAAGATTATT+TGG - chr3_3:60896167-60896186 None:intergenic 20.0%
!!! AAATCCAAAGTTTTTTTACA+TGG + chr3_3:60896191-60896210 Msa0462140:intron 20.0%
!!! AATCCAAAGTTTTTTTACAT+GGG + chr3_3:60896192-60896211 Msa0462140:intron 20.0%
!!! AATTTTTTTTCTCTTTTTGC+AGG + chr3_3:60896363-60896382 Msa0462140:intron 20.0%
!! AATATATACATGCTAATACT+TGG + chr3_3:60896645-60896664 Msa0462140:CDS 20.0%
!! TAAATTAATAATGTTAGGAC+CGG + chr3_3:60896760-60896779 Msa0462140:intron 20.0%
!! AGTTTCTACTGTAATTTATT+TGG + chr3_3:60897235-60897254 Msa0462140:intron 20.0%
!! CACTAAAATTTCTAAATATG+TGG - chr3_3:60897289-60897308 None:intergenic 20.0%
!! CTTTGTAAGATATTCTTAAA+TGG - chr3_3:60898368-60898387 None:intergenic 20.0%
!!! AATTCTAATAGGAAGTATAA+TGG + chr3_3:60898640-60898659 Msa0462140:CDS 20.0%
! GAAAAGATAATGAAGTTGAA+TGG - chr3_3:60895533-60895552 None:intergenic 25.0%
! AAGATTGTTATCGCAAAAAA+TGG - chr3_3:60895879-60895898 None:intergenic 25.0%
! TGTATAGTCAAAATTTACGA+AGG - chr3_3:60896046-60896065 None:intergenic 25.0%
! AAAATAGATGATATGGTATG+AGG + chr3_3:60896065-60896084 Msa0462140:intron 25.0%
! AAATAGATGATATGGTATGA+GGG + chr3_3:60896066-60896085 Msa0462140:intron 25.0%
!! CATGTAATTTCAACGAATTT+TGG - chr3_3:60896096-60896115 None:intergenic 25.0%
! CAAAATTCGTTGAAATTACA+TGG + chr3_3:60896094-60896113 Msa0462140:intron 25.0%
! AAATTCGTTGAAATTACATG+GGG + chr3_3:60896096-60896115 Msa0462140:intron 25.0%
! TATCCCATGTAAAAAAACTT+TGG - chr3_3:60896198-60896217 None:intergenic 25.0%
! TATTTGGAAAAGAGAGATAA+TGG + chr3_3:60897251-60897270 Msa0462140:intron 25.0%
! ATTAAAAAGTGAAGTGTGTT+TGG - chr3_3:60897504-60897523 None:intergenic 25.0%
! TTAGACTATGATAAGTAAGA+CGG + chr3_3:60897525-60897544 Msa0462140:intron 25.0%
! ATATTGCACGAAAATTAAGT+GGG - chr3_3:60897633-60897652 None:intergenic 25.0%
! AATATTGCACGAAAATTAAG+TGG - chr3_3:60897634-60897653 None:intergenic 25.0%
!!! TCACTTGTAAACTCATTTTT+AGG + chr3_3:60897829-60897848 Msa0462140:intron 25.0%
! TTAGAAGTTCAAAATTGGAT+GGG - chr3_3:60897861-60897880 None:intergenic 25.0%
! ATTAGAAGTTCAAAATTGGA+TGG - chr3_3:60897862-60897881 None:intergenic 25.0%
!! GTGAAAGTATAGTTGTTAAT+TGG + chr3_3:60897915-60897934 Msa0462140:intron 25.0%
! AGTATAGTTGTTAATTGGAT+TGG + chr3_3:60897920-60897939 Msa0462140:intron 25.0%
! ACATTAACATAAACTTCAGA+TGG + chr3_3:60897960-60897979 Msa0462140:intron 25.0%
! CCATTTCTGATAGATATAAT+GGG - chr3_3:60898016-60898035 None:intergenic 25.0%
! TCAGCAAATTTAATCAACTT+TGG + chr3_3:60898101-60898120 Msa0462140:CDS 25.0%
! CTAATCCAATGGTTAAAAAT+AGG - chr3_3:60898481-60898500 None:intergenic 25.0%
!!! CTATTTTTAACCATTGGATT+AGG + chr3_3:60898479-60898498 Msa0462140:CDS 25.0%
! TTCTTCTCACAAATTCTAAT+AGG + chr3_3:60898629-60898648 Msa0462140:CDS 25.0%
!!! TATGGAACTTTCTTCTTTTT+TGG + chr3_3:60898902-60898921 Msa0462140:CDS 25.0%
!!! TTTGGAGAGAACATTTTTTT+TGG + chr3_3:60899008-60899027 Msa0462140:CDS 25.0%
ATACAAGAGAGAATCACAAT+AGG - chr3_3:60895448-60895467 None:intergenic 30.0%
TATTGTGATTCTCTCTTGTA+TGG + chr3_3:60895447-60895466 Msa0462140:CDS 30.0%
GGTTATGATATAGGAATTTC+AGG + chr3_3:60895496-60895515 Msa0462140:CDS 30.0%
TAAATCAAAACTTGCCCAAA+TGG + chr3_3:60896216-60896235 Msa0462140:intron 30.0%
!!! TTTTTTTCTCTTTTTGCAGG+TGG + chr3_3:60896366-60896385 Msa0462140:intron 30.0%
GGAAAAAACTTCTCCAAAAA+TGG - chr3_3:60896408-60896427 None:intergenic 30.0%
ACTTCATCACTATATATAGC+TGG + chr3_3:60896507-60896526 Msa0462140:CDS 30.0%
AAGCAAAGAAAGATGCTAAA+AGG - chr3_3:60896533-60896552 None:intergenic 30.0%
ACTGTACATACCAAACAAAA+AGG + chr3_3:60896862-60896881 Msa0462140:intron 30.0%
!! GACTAATTTGCCTTTTTGTT+TGG - chr3_3:60896875-60896894 None:intergenic 30.0%
ACTACTGTGTTCATATACAT+TGG + chr3_3:60896949-60896968 Msa0462140:intron 30.0%
GTACAGTAAATGTAAACAAG+AGG + chr3_3:60896993-60897012 Msa0462140:intron 30.0%
TTGGGACCGAAAATTATAAA+GGG + chr3_3:60897086-60897105 Msa0462140:intron 30.0%
! GGAGATCCCTTTATAATTTT+CGG - chr3_3:60897095-60897114 None:intergenic 30.0%
!! GTGTGTTTGGAGTTTTATAA+TGG - chr3_3:60897491-60897510 None:intergenic 30.0%
! GGATCTCTAAAAATTTGTGT+TGG + chr3_3:60897560-60897579 Msa0462140:intron 30.0%
GACGATTAGAAGTTCAAAAT+TGG - chr3_3:60897866-60897885 None:intergenic 30.0%
GTCAGTGTTAAACATGTTTA+TGG + chr3_3:60897891-60897910 Msa0462140:intron 30.0%
! AAAAGTTTCTTTTCTTCTGC+AGG + chr3_3:60897986-60898005 Msa0462140:intron 30.0%
CCCATTATATCTATCAGAAA+TGG + chr3_3:60898013-60898032 Msa0462140:CDS 30.0%
GCCATTTCTGATAGATATAA+TGG - chr3_3:60898017-60898036 None:intergenic 30.0%
!!! TTTGATGGTTTTTGCTGTTT+TGG - chr3_3:60898244-60898263 None:intergenic 30.0%
ACATGATACTTGCTTCAATA+AGG - chr3_3:60898328-60898347 None:intergenic 30.0%
!! ATATAGACCTCAACTTGTTA+TGG + chr3_3:60898391-60898410 Msa0462140:CDS 30.0%
AAATAGGATTGGAGCATAAA+AGG - chr3_3:60898465-60898484 None:intergenic 30.0%
CCAATGGTTAAAAATAGGAT+TGG - chr3_3:60898476-60898495 None:intergenic 30.0%
!!! CCAATCCTATTTTTAACCAT+TGG + chr3_3:60898473-60898492 Msa0462140:CDS 30.0%
!! ATGCTCATAGTTGATAAACT+AGG + chr3_3:60898569-60898588 Msa0462140:CDS 30.0%
!!! AGAAGAGTTTTGTTCATATC+AGG + chr3_3:60898593-60898612 Msa0462140:CDS 30.0%
! ATGCTATGTCATTTCAAGTA+TGG + chr3_3:60898884-60898903 Msa0462140:CDS 30.0%
!!! TTTCTTCTTTTTTGGAGGTT+GGG + chr3_3:60898910-60898929 Msa0462140:CDS 30.0%
TTGTGGTGTGTATTCACAAA+AGG - chr3_3:60895580-60895599 None:intergenic 35.0%
GTCTTTACATCACTGTCATT+TGG + chr3_3:60895943-60895962 Msa0462140:intron 35.0%
!!! AACATCAATGGTGCCATTTT+TGG + chr3_3:60896392-60896411 Msa0462140:CDS 35.0%
! TTCATCTTGGTGTATACATC+TGG - chr3_3:60896429-60896448 None:intergenic 35.0%
!! CTTGTTGTCTTGTTTCATCT+TGG - chr3_3:60896442-60896461 None:intergenic 35.0%
AAGTGAATGTTGTTAGGAGT+TGG - chr3_3:60896491-60896510 None:intergenic 35.0%
GTGATGAAGTGAATGTTGTT+AGG - chr3_3:60896497-60896516 None:intergenic 35.0%
AAACCATCAATTCTTGTAGG+TGG + chr3_3:60896579-60896598 Msa0462140:CDS 35.0%
CTAATTTACGTTGAGTCTCA+AGG - chr3_3:60896927-60896946 None:intergenic 35.0%
CTTGGGACCGAAAATTATAA+AGG + chr3_3:60897085-60897104 Msa0462140:intron 35.0%
!!! TTTTTTACATTGGCCCAAGT+CGG + chr3_3:60897154-60897173 Msa0462140:intron 35.0%
! AGAGATAATGGCACTCTTTA+AGG + chr3_3:60897263-60897282 Msa0462140:intron 35.0%
AACTCTTCGACCTAATAGAT+CGG - chr3_3:60897374-60897393 None:intergenic 35.0%
TATTAGGTCGAAGAGTTTCA+AGG + chr3_3:60897377-60897396 Msa0462140:intron 35.0%
!!! TTTTTGGTTGGTAGACGAAA+TGG + chr3_3:60897460-60897479 Msa0462140:intron 35.0%
GTAAGACGGTGAAATATGAA+TGG + chr3_3:60897539-60897558 Msa0462140:intron 35.0%
!! TCTCACAAGTCAGTTTTGTA+TGG - chr3_3:60897796-60897815 None:intergenic 35.0%
TTGATTGCTCCTCTATATCT+TGG - chr3_3:60898044-60898063 None:intergenic 35.0%
TATAGAGGAGCAATCAACAT+TGG + chr3_3:60898047-60898066 Msa0462140:CDS 35.0%
GGTACAGAAAAGATCAAAGA+CGG + chr3_3:60898122-60898141 Msa0462140:CDS 35.0%
AGAAAAGATCAAAGACGGTT+GGG + chr3_3:60898127-60898146 Msa0462140:CDS 35.0%
!! TTATGCTGTTTGGTGTTTCT+GGG - chr3_3:60898220-60898239 None:intergenic 35.0%
!! ATTATGCTGTTTGGTGTTTC+TGG - chr3_3:60898221-60898240 None:intergenic 35.0%
!! CTGTTTTGGATTATGCTGTT+TGG - chr3_3:60898230-60898249 None:intergenic 35.0%
!! GCATTAACTTGGCTTTTTGA+TGG - chr3_3:60898259-60898278 None:intergenic 35.0%
! TATGGATTGCAGCATTAACT+TGG - chr3_3:60898270-60898289 None:intergenic 35.0%
TTAATGCTGCAATCCATAAG+AGG + chr3_3:60898272-60898291 Msa0462140:CDS 35.0%
AGATGTTCAACAAGAATTCG+AGG + chr3_3:60898301-60898320 Msa0462140:CDS 35.0%
CCTGTGAATTGTTGGAAAAA+AGG - chr3_3:60898428-60898447 None:intergenic 35.0%
!!! CCTTTTTTCCAACAATTCAC+AGG + chr3_3:60898425-60898444 Msa0462140:CDS 35.0%
!! CATTGATTCCTGTGAATTGT+TGG - chr3_3:60898436-60898455 None:intergenic 35.0%
!! TTCACTTTTGTCTGCAGTTA+TGG + chr3_3:60898511-60898530 Msa0462140:CDS 35.0%
! TTTTGTCTGCAGTTATGGTA+GGG + chr3_3:60898516-60898535 Msa0462140:CDS 35.0%
!!! AGAGTTTTGTTCATATCAGG+TGG + chr3_3:60898596-60898615 Msa0462140:CDS 35.0%
! TCCTAGTGAGATTTTTCCAT+TGG + chr3_3:60898781-60898800 Msa0462140:CDS 35.0%
TCCAATGGAAAAATCTCACT+AGG - chr3_3:60898785-60898804 None:intergenic 35.0%
!!! GGAACTTTCTTCTTTTTTGG+AGG + chr3_3:60898905-60898924 Msa0462140:CDS 35.0%
!!! CTTTCTTCTTTTTTGGAGGT+TGG + chr3_3:60898909-60898928 Msa0462140:CDS 35.0%
ATTGGAACATTCTTGGTTTC+TGG - chr3_3:60898971-60898990 None:intergenic 35.0%
TTGCTCAATTGGAACATTCT+TGG - chr3_3:60898978-60898997 None:intergenic 35.0%
GAATGTTCCAATTGAGCAAA+TGG + chr3_3:60898979-60898998 Msa0462140:CDS 35.0%
TTCCAATTGAGCAAATGGAT+AGG + chr3_3:60898984-60899003 Msa0462140:CDS 35.0%
TCCAATTGAGCAAATGGATA+GGG + chr3_3:60898985-60899004 Msa0462140:CDS 35.0%
ATTGTTGGAGACAAGATTGA+AGG + chr3_3:60899037-60899056 Msa0462140:CDS 35.0%
AGCAATGGAAGAGGATACAA+TGG + chr3_3:60895412-60895431 Msa0462140:CDS 40.0%
TGTGATTCTCTCTTGTATGG+TGG + chr3_3:60895450-60895469 Msa0462140:CDS 40.0%
AAAACTTGCCCAAATGGCAT+AGG + chr3_3:60896222-60896241 Msa0462140:intron 40.0%
AAACTTGCCCAAATGGCATA+GGG + chr3_3:60896223-60896242 Msa0462140:intron 40.0%
! GTGTTTACCCTATGCCATTT+GGG - chr3_3:60896233-60896252 None:intergenic 40.0%
TCATCAATCACAAGAGCCTT+TGG + chr3_3:60896552-60896571 Msa0462140:CDS 40.0%
! AATTGATGGTTTGCGACCAA+AGG - chr3_3:60896571-60896590 None:intergenic 40.0%
CGCAAACCATCAATTCTTGT+AGG + chr3_3:60896576-60896595 Msa0462140:CDS 40.0%
ATACTTGGTCGTGTTCTTCT+TGG + chr3_3:60896660-60896679 Msa0462140:CDS 40.0%
GTTCTTCTTGGAGTTGGAAT+TGG + chr3_3:60896672-60896691 Msa0462140:CDS 40.0%
!! TGGAATTGGCTTTGCTAATC+AGG + chr3_3:60896686-60896705 Msa0462140:CDS 40.0%
! TTTTTACATTGGCCCAAGTC+GGG + chr3_3:60897155-60897174 Msa0462140:intron 40.0%
TAGGACAAGACCGATCTATT+AGG + chr3_3:60897361-60897380 Msa0462140:intron 40.0%
TCTAAATGTCTGTGCATGAG+GGG - chr3_3:60897684-60897703 None:intergenic 40.0%
CTCTAAATGTCTGTGCATGA+GGG - chr3_3:60897685-60897704 None:intergenic 40.0%
ACTCTAAATGTCTGTGCATG+AGG - chr3_3:60897686-60897705 None:intergenic 40.0%
!! CAAAACTGACTTGTGAGATG+AGG + chr3_3:60897798-60897817 Msa0462140:intron 40.0%
ATGGCACTTCCAAGATATAG+AGG + chr3_3:60898032-60898051 Msa0462140:CDS 40.0%
! TTCCAGCTTTGTGTTGGAAT+TGG + chr3_3:60898071-60898090 Msa0462140:CDS 40.0%
CAGAAAAGATCAAAGACGGT+TGG + chr3_3:60898126-60898145 Msa0462140:CDS 40.0%
GAAAAGATCAAAGACGGTTG+GGG + chr3_3:60898128-60898147 Msa0462140:CDS 40.0%
CCTAAAGTGAGGATTAAAGC+TGG - chr3_3:60898185-60898204 None:intergenic 40.0%
! CCAGCTTTAATCCTCACTTT+AGG + chr3_3:60898182-60898201 Msa0462140:CDS 40.0%
GGAAAAATGCTCCTAAAGTG+AGG - chr3_3:60898196-60898215 None:intergenic 40.0%
AACATCTTGTGTGCCTCTTA+TGG - chr3_3:60898288-60898307 None:intergenic 40.0%
GCTATTGCCATAACAAGTTG+AGG - chr3_3:60898401-60898420 None:intergenic 40.0%
AGCACTTTCACCTAATCCAA+TGG - chr3_3:60898492-60898511 None:intergenic 40.0%
! CTTTTGTCTGCAGTTATGGT+AGG + chr3_3:60898515-60898534 Msa0462140:CDS 40.0%
AGTATAATGGCAGCACAACT+TGG + chr3_3:60898653-60898672 Msa0462140:CDS 40.0%
TTGATATGCATTTACGTCGC+CGG + chr3_3:60898722-60898741 Msa0462140:CDS 40.0%
ACCCTATCCATTTGCTCAAT+TGG - chr3_3:60898989-60899008 None:intergenic 40.0%
TTGAGCAAATGGATAGGGTT+TGG + chr3_3:60898990-60899009 Msa0462140:CDS 40.0%
GATTGAAGGCAAACAAACTG+TGG + chr3_3:60899051-60899070 Msa0462140:CDS 40.0%
GAGCTACCAATTGCAAGCAA+TGG + chr3_3:60895397-60895416 Msa0462140:CDS 45.0%
CCTCTTCCATTGCTTGCAAT+TGG - chr3_3:60895406-60895425 None:intergenic 45.0%
CCAATTGCAAGCAATGGAAG+AGG + chr3_3:60895403-60895422 Msa0462140:CDS 45.0%
ACCAAAGATAATGCCTCCAG+TGG - chr3_3:60895479-60895498 None:intergenic 45.0%
AGATACGAGTAGCGTACAAG+TGG + chr3_3:60895842-60895861 Msa0462140:intron 45.0%
CGTGTTTACCCTATGCCATT+TGG - chr3_3:60896234-60896253 None:intergenic 45.0%
TGCAGGTGGTGTAACATCAA+TGG + chr3_3:60896380-60896399 Msa0462140:intron 45.0%
GCACCACCTACAAGAATTGA+TGG - chr3_3:60896585-60896604 None:intergenic 45.0%
TTCCTTATTGGAGCAGCTCT+TGG + chr3_3:60896609-60896628 Msa0462140:CDS 45.0%
CGCTGCAACGTAATTCTAAG+AGG - chr3_3:60896902-60896921 None:intergenic 45.0%
!! AAACCGACTTGTAGAGGTGA+GGG + chr3_3:60897601-60897620 Msa0462140:intron 45.0%
CTAAATGTCTGTGCATGAGG+GGG - chr3_3:60897683-60897702 None:intergenic 45.0%
! CATTTAGAGTGTGACGTGAG+TGG + chr3_3:60897696-60897715 Msa0462140:intron 45.0%
! ATTGGCTTCCAGCTTTGTGT+TGG + chr3_3:60898065-60898084 Msa0462140:CDS 45.0%
CACCAATTCCAACACAAAGC+TGG - chr3_3:60898076-60898095 None:intergenic 45.0%
ATGGCGAATTTCTCTAGCCA+TGG + chr3_3:60898151-60898170 Msa0462140:CDS 45.0%
GCAGTTATGGTAGGGATTGT+AGG + chr3_3:60898524-60898543 Msa0462140:CDS 45.0%
CTAGGAACCAACCATCCTAA+TGG - chr3_3:60898767-60898786 None:intergenic 45.0%
GCTGCTGATCTAATCTCCAA+TGG - chr3_3:60898800-60898819 None:intergenic 45.0%
!!! CTTCTTTTTTGGAGGTTGGG+TGG + chr3_3:60898913-60898932 Msa0462140:CDS 45.0%
!!! ATAATAAGATAATAATTTTT+CGG - chr3_3:60897117-60897136 None:intergenic 5.0%
!!! AATGAATATTTTTTTTTTTT+TGG + chr3_3:60897444-60897463 Msa0462140:intron 5.0%
!! GCCACTGGAGGCATTATCTT+TGG + chr3_3:60895475-60895494 Msa0462140:CDS 50.0%
!! GGTGGTGCTGCATTCCTTAT+TGG + chr3_3:60896597-60896616 Msa0462140:CDS 50.0%
CACCAAGAGCTGCTCCAATA+AGG - chr3_3:60896614-60896633 None:intergenic 50.0%
CTTATTGGAGCAGCTCTTGG+TGG + chr3_3:60896612-60896631 Msa0462140:CDS 50.0%
GGTCGTGTTCTTCTTGGAGT+TGG + chr3_3:60896666-60896685 Msa0462140:CDS 50.0%
AATTTGTCCGGTCCCGACTT+GGG - chr3_3:60897170-60897189 None:intergenic 50.0%
AAATTTGTCCGGTCCCGACT+TGG - chr3_3:60897171-60897190 None:intergenic 50.0%
TGCCTTTATGACACGCTGCT+AGG + chr3_3:60897342-60897361 Msa0462140:intron 50.0%
GTCCTAGCAGCGTGTCATAA+AGG - chr3_3:60897347-60897366 None:intergenic 50.0%
! CCTCTACAAGTCGGTTTCAC+AGG - chr3_3:60897598-60897617 None:intergenic 50.0%
!! CCTGTGAAACCGACTTGTAG+AGG + chr3_3:60897595-60897614 Msa0462140:intron 50.0%
!! GAAACCGACTTGTAGAGGTG+AGG + chr3_3:60897600-60897619 Msa0462140:intron 50.0%
CATCCCTCACCTCTACAAGT+CGG - chr3_3:60897607-60897626 None:intergenic 50.0%
AGATCAAAGACGGTTGGGGA+TGG + chr3_3:60898132-60898151 Msa0462140:CDS 50.0%
TAAAGCTGGAACTGCTGCCA+TGG - chr3_3:60898171-60898190 None:intergenic 50.0%
!! TGCTGTTTGGTGTTTCTGGG+AGG - chr3_3:60898217-60898236 None:intergenic 50.0%
! GCAGCACAACTTGGTGATCA+TGG + chr3_3:60898662-60898681 Msa0462140:CDS 50.0%
! TTTACGTCGCCGGATTTGCT+TGG + chr3_3:60898732-60898751 Msa0462140:CDS 50.0%
TCTTGTATGGTGGCTGCCAC+TGG + chr3_3:60895460-60895479 Msa0462140:CDS 55.0%
TGACGTGAGTGGCCTGATAG+CGG + chr3_3:60897707-60897726 Msa0462140:intron 55.0%
AGCGGGCGCTCAACAGATTT+CGG + chr3_3:60897725-60897744 Msa0462140:intron 55.0%
! TCGCCGGATTTGCTTGGTCA+TGG + chr3_3:60898738-60898757 Msa0462140:CDS 55.0%
! CGCCGGATTTGCTTGGTCAT+GGG + chr3_3:60898739-60898758 Msa0462140:CDS 55.0%
! GCCGGATTTGCTTGGTCATG+GGG + chr3_3:60898740-60898759 Msa0462140:CDS 55.0%
CCCCCATGACCAAGCAAATC+CGG - chr3_3:60898744-60898763 None:intergenic 55.0%
! CCGGATTTGCTTGGTCATGG+GGG + chr3_3:60898741-60898760 Msa0462140:CDS 55.0%
ATGGGGGCCATTAGGATGGT+TGG + chr3_3:60898757-60898776 Msa0462140:CDS 55.0%
TGTATGGTGGCTGCCACTGG+AGG + chr3_3:60895463-60895482 Msa0462140:CDS 60.0%
ACATTGGCCCAAGTCGGGAC+CGG + chr3_3:60897160-60897179 Msa0462140:intron 60.0%
GACGTGAGTGGCCTGATAGC+GGG + chr3_3:60897708-60897727 Msa0462140:intron 60.0%
TCTGTTGAGCGCCCGCTATC+AGG - chr3_3:60897722-60897741 None:intergenic 60.0%
GCTTGGTCATGGGGGCCATT+AGG + chr3_3:60898749-60898768 Msa0462140:CDS 60.0%
GGTCATGGGGGCCATTAGGA+TGG + chr3_3:60898753-60898772 Msa0462140:CDS 60.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 60895385 60899081 60895385 ID=Msa0462140;Name=Msa0462140
chr3_3 mRNA 60895385 60899081 60895385 ID=Msa0462140-mRNA-1;Parent=Msa0462140;Name=Msa0462140-mRNA-1;_AED=0.57;_eAED=0.57;_QI=0|0|0|0.33|1|1|3|0|509
chr3_3 exon 60895385 60895517 60895385 ID=Msa0462140-mRNA-1:exon:12807;Parent=Msa0462140-mRNA-1
chr3_3 exon 60896385 60896707 60896385 ID=Msa0462140-mRNA-1:exon:12808;Parent=Msa0462140-mRNA-1
chr3_3 exon 60898008 60899081 60898008 ID=Msa0462140-mRNA-1:exon:12809;Parent=Msa0462140-mRNA-1
chr3_3 CDS 60895385 60895517 60895385 ID=Msa0462140-mRNA-1:cds;Parent=Msa0462140-mRNA-1
chr3_3 CDS 60896385 60896707 60896385 ID=Msa0462140-mRNA-1:cds;Parent=Msa0462140-mRNA-1
chr3_3 CDS 60898008 60899081 60898008 ID=Msa0462140-mRNA-1:cds;Parent=Msa0462140-mRNA-1
Gene Sequence

>Msa0462140

ATGGCAGTAGTAGAGCTACCAATTGCAAGCAATGGAAGAGGATACAATGGAAAGATGACTCCTATTGTGATTCTCTCTTGTATGGTGGCTGCCACTGGAGGCATTATCTTTGGTTATGATATAGGAATTTCAGGTGGTGTAACATCAATGGTGCCATTTTTGGAGAAGTTTTTTCCAGATGTATACACCAAGATGAAACAAGACAACAAGATAAGCAATTACTGCAAATTTGATAGCCAACTCCTAACAACATTCACTTCATCACTATATATAGCTGGCCTTTTAGCATCTTTCTTTGCTTCATCAATCACAAGAGCCTTTGGTCGCAAACCATCAATTCTTGTAGGTGGTGCTGCATTCCTTATTGGAGCAGCTCTTGGTGGTGCTGCACTTAATATATACATGCTAATACTTGGTCGTGTTCTTCTTGGAGTTGGAATTGGCTTTGCTAATCAGGCAGTCCCATTATATCTATCAGAAATGGCACTTCCAAGATATAGAGGAGCAATCAACATTGGCTTCCAGCTTTGTGTTGGAATTGGTGTTTTATCAGCAAATTTAATCAACTTTGGTACAGAAAAGATCAAAGACGGTTGGGGATGGCGAATTTCTCTAGCCATGGCAGCAGTTCCAGCTTTAATCCTCACTTTAGGAGCATTTTTCCTCCCAGAAACACCAAACAGCATAATCCAAAACAGCAAAAACCATCAAAAAGCCAAGTTAATGCTGCAATCCATAAGAGGCACACAAGATGTTCAACAAGAATTCGAGGACCTTATTGAAGCAAGTATCATGTCAAATTCTATCAAACATCCATTTAAGAATATCTTACAAAGAAAATATAGACCTCAACTTGTTATGGCAATAGCTATACCTTTTTTCCAACAATTCACAGGAATCAATGTCATTTCCTTTTATGCTCCAATCCTATTTTTAACCATTGGATTAGGTGAAAGTGCTTCACTTTTGTCTGCAGTTATGGTAGGGATTGTAGGTACTACTTCAACATTCATATCAATGCTCATAGTTGATAAACTAGGTAGAAGAGTTTTGTTCATATCAGGTGGAATTCAAATGTTCTTCTCACAAATTCTAATAGGAAGTATAATGGCAGCACAACTTGGTGATCATGGTGAAATAAGCAAGAAATATGCATATTTGATTCTAGTTTTGATATGCATTTACGTCGCCGGATTTGCTTGGTCATGGGGGCCATTAGGATGGTTGGTTCCTAGTGAGATTTTTCCATTGGAGATTAGATCAGCAGCACAAAGTATTACAGTTGCAGTGAACTTTCTGTTTACTTTCATTGTTGCTCAAACTTTTCTTAGTATGCTATGTCATTTCAAGTATGGAACTTTCTTCTTTTTTGGAGGTTGGGTGGTTATGATGACAGTGTTTGTTTATTTTCTTTTACCAGAAACCAAGAATGTTCCAATTGAGCAAATGGATAGGGTTTGGAGAGAACATTTTTTTTGGAAAAAAATTGTTGGAGACAAGATTGAAGGCAAACAAACTGTGGTGCCTTAA
Protein sequence

>Msa0462140

MAVVELPIASNGRGYNGKMTPIVILSCMVAATGGIIFGYDIGISGGVTSMVPFLEKFFPDVYTKMKQDNKISNYCKFDSQLLTTFTSSLYIAGLLASFFASSITRAFGRKPSILVGGAAFLIGAALGGAALNIYMLILGRVLLGVGIGFANQAVPLYLSEMALPRYRGAINIGFQLCVGIGVLSANLINFGTEKIKDGWGWRISLAMAAVPALILTLGAFFLPETPNSIIQNSKNHQKAKLMLQSIRGTQDVQQEFEDLIEASIMSNSIKHPFKNILQRKYRPQLVMAIAIPFFQQFTGINVISFYAPILFLTIGLGESASLLSAVMVGIVGTTSTFISMLIVDKLGRRVLFISGGIQMFFSQILIGSIMAAQLGDHGEISKKYAYLILVLICIYVAGFAWSWGPLGWLVPSEIFPLEIRSAAQSITVAVNFLFTFIVAQTFLSMLCHFKYGTFFFFGGWVVMMTVFVYFLLPETKNVPIEQMDRVWREHFFWKKIVGDKIEGKQTVVP*