Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0394760 | XP_003598370.1 | 84.407 | 481 | 8 | 2 | 1 | 414 | 1 | 481 | 0.0 | 801 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0394760 | sp|Q94BZ1|ZIFL1_ARATH | 47.689 | 476 | 178 | 5 | 2 | 407 | 3 | 477 | 1.11e-156 | 453 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0394760 | G7IVI3 | 84.407 | 481 | 8 | 2 | 1 | 414 | 1 | 481 | 0.0 | 801 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0037180 | Msa0394760 | 0.800972 | 1.121265e-48 | -8.615850e-47 |
| Msa0139500 | Msa0394760 | 0.815427 | 9.297727e-52 | -8.615850e-47 |
| Msa0394760 | Msa0567330 | 0.800532 | 1.379189e-48 | -8.615850e-47 |
| Msa0394760 | Msa1165460 | 0.817028 | 4.077037e-52 | -8.615850e-47 |
| Msa0394760 | Msa1368390 | 0.806409 | 8.342660e-50 | -8.615850e-47 |
| Msa0334320 | Msa0394760 | 0.806455 | 8.159155e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0394760 | MtrunA17_Chr3g0080431 | 84.407 | 481 | 8 | 2 | 1 | 414 | 1 | 481 | 0.0 | 801 |
| Msa0394760 | MtrunA17_Chr3g0080421 | 60.246 | 488 | 119 | 7 | 1 | 414 | 1 | 487 | 0.0 | 569 |
| Msa0394760 | MtrunA17_Chr8g0354841 | 56.875 | 480 | 133 | 5 | 6 | 414 | 4 | 480 | 0.0 | 553 |
| Msa0394760 | MtrunA17_Chr8g0354831 | 54.545 | 484 | 149 | 4 | 2 | 414 | 4 | 487 | 0.0 | 549 |
| Msa0394760 | MtrunA17_Chr8g0354851 | 54.379 | 491 | 132 | 5 | 6 | 407 | 4 | 491 | 0.0 | 531 |
| Msa0394760 | MtrunA17_Chr8g0354891 | 55.579 | 484 | 141 | 6 | 2 | 414 | 4 | 484 | 0.0 | 529 |
| Msa0394760 | MtrunA17_Chr8g0364441 | 57.531 | 405 | 91 | 5 | 18 | 379 | 86 | 452 | 4.06e-155 | 446 |
| Msa0394760 | MtrunA17_Chr8g0354861 | 62.271 | 273 | 97 | 2 | 123 | 392 | 47 | 316 | 6.47e-124 | 361 |
| Msa0394760 | MtrunA17_Chr3g0123441 | 70.435 | 115 | 34 | 0 | 269 | 383 | 1 | 115 | 1.54e-50 | 166 |
| Msa0394760 | MtrunA17_Chr3g0123421 | 45.631 | 206 | 44 | 5 | 2 | 140 | 4 | 208 | 7.55e-49 | 165 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0394760 | AT5G13750.1 | 47.689 | 476 | 178 | 5 | 2 | 407 | 3 | 477 | 1.13e-157 | 453 |
| Msa0394760 | AT5G13740.1 | 46.074 | 484 | 182 | 5 | 2 | 407 | 3 | 485 | 8.77e-148 | 429 |
| Msa0394760 | AT3G43790.1 | 48.598 | 428 | 174 | 4 | 21 | 403 | 48 | 474 | 4.39e-142 | 414 |
| Msa0394760 | AT3G43790.4 | 48.598 | 428 | 174 | 4 | 21 | 403 | 48 | 474 | 4.39e-142 | 414 |
| Msa0394760 | AT3G43790.2 | 47.926 | 434 | 174 | 5 | 21 | 403 | 48 | 480 | 2.97e-139 | 407 |
| Msa0394760 | AT3G43790.3 | 47.926 | 434 | 174 | 5 | 21 | 403 | 48 | 480 | 2.97e-139 | 407 |
| Msa0394760 | AT5G13750.2 | 49.105 | 391 | 157 | 3 | 59 | 407 | 1 | 391 | 2.55e-135 | 393 |
| Msa0394760 | AT5G13740.2 | 45.786 | 439 | 159 | 5 | 2 | 362 | 3 | 440 | 6.37e-132 | 387 |
| Msa0394760 | AT5G13750.3 | 45.833 | 408 | 150 | 5 | 2 | 339 | 3 | 409 | 8.47e-126 | 370 |
| Msa0394760 | AT5G13750.4 | 45.833 | 408 | 150 | 5 | 2 | 339 | 3 | 409 | 8.47e-126 | 370 |
| Msa0394760 | AT3G43790.5 | 47.354 | 359 | 143 | 4 | 21 | 334 | 48 | 405 | 1.61e-110 | 331 |
| Msa0394760 | AT5G13940.2 | 44.186 | 86 | 32 | 1 | 200 | 285 | 8 | 77 | 8.81e-16 | 79.7 |
| Msa0394760 | AT5G13940.1 | 44.186 | 86 | 32 | 1 | 200 | 285 | 159 | 228 | 8.86e-16 | 80.1 |
Find 98 sgRNAs with CRISPR-Local
Find 335 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATCCTTTGGAAATATATT+TGG | 0.129831 | 3_2:-9943539 | None:intergenic |
| GAATTTGCATCATGCAAATT+TGG | 0.149530 | 3_2:+9946634 | Msa0394760:three_prime_UTR |
| TACATAATCATGGAAGATTT+TGG | 0.184692 | 3_2:+9940404 | None:intergenic |
| GAGCTTCGACATCTATATTA+TGG | 0.224672 | 3_2:+9942144 | Msa0394760:CDS |
| AAAATTGAAGCTTTAGAAAA+TGG | 0.231093 | 3_2:+9943977 | Msa0394760:CDS |
| AACAATGATAGATGACATTA+AGG | 0.236048 | 3_2:-9944062 | None:intergenic |
| CGAAAACCTGTTGTGATAAT+AGG | 0.246718 | 3_2:+9942191 | Msa0394760:CDS |
| AATTAAAAGATTCTTTAAAA+TGG | 0.254196 | 3_2:-9944798 | None:intergenic |
| TGTCCTTTGCTGACATTCTA+TGG | 0.257778 | 3_2:-9946550 | None:intergenic |
| TATCCAATGGTATTGTTGTT+AGG | 0.308355 | 3_2:-9946577 | None:intergenic |
| TGGTGAAATATTATAGCAAC+TGG | 0.311166 | 3_2:+9946515 | Msa0394760:three_prime_UTR |
| GGTAATATTCTTGCAGTATC+AGG | 0.312627 | 3_2:+9944302 | Msa0394760:CDS |
| TGCAGTAGATTAGTTGAGTT+TGG | 0.313359 | 3_2:+9946711 | Msa0394760:three_prime_UTR |
| ATTTCCATACCTCTATTTCA+TGG | 0.316231 | 3_2:+9940838 | Msa0394760:CDS |
| CATAAAATTTGAAAACATAT+TGG | 0.327819 | 3_2:-9946768 | None:intergenic |
| TTCGTTCTTGGAGGTTTAAA+TGG | 0.333038 | 3_2:+9942649 | Msa0394760:CDS |
| TATTTCCAAAGGATTCCTTT+TGG | 0.334733 | 3_2:+9943546 | Msa0394760:CDS |
| ATGAAGCACGGCAAGAAGTA+TGG | 0.338985 | 3_2:-9943683 | None:intergenic |
| CCCTTCATGACAATGTTGTC+AGG | 0.339530 | 3_2:+9944743 | Msa0394760:CDS |
| TTAGTTGAGTTTGGATTGAT+TGG | 0.350406 | 3_2:+9946720 | Msa0394760:three_prime_UTR |
| AATTTGCATCATGCAAATTT+GGG | 0.353874 | 3_2:+9946635 | Msa0394760:three_prime_UTR |
| ATGTCAGCATGCAAGGTAAT+TGG | 0.364337 | 3_2:+9945153 | Msa0394760:CDS |
| TTATCCCAAAAGGAATCCTT+TGG | 0.364927 | 3_2:-9943551 | None:intergenic |
| TAGTAGCAATTTCCTGCATT+TGG | 0.367001 | 3_2:+9943726 | Msa0394760:CDS |
| ATCGTTCTTGCTCGCATCGC+AGG | 0.378324 | 3_2:+9944601 | Msa0394760:CDS |
| CACATTGCGCCGCCTCCAGC+TGG | 0.389601 | 3_2:-9945177 | None:intergenic |
| AAGGGGAAGCTTTGCAAGAT+AGG | 0.395175 | 3_2:-9944725 | None:intergenic |
| AGCTTCGACATCTATATTAT+GGG | 0.397954 | 3_2:+9942145 | Msa0394760:CDS |
| ATATTTGGATATTTCTGTAC+TGG | 0.401992 | 3_2:-9943524 | None:intergenic |
| GGAGGTTTAAATGGTTTGCT+TGG | 0.407712 | 3_2:+9942658 | Msa0394760:CDS |
| ATAATTCCTATTATCACAAC+AGG | 0.416010 | 3_2:-9942197 | None:intergenic |
| GTTACGATGAGATTCGTTCT+TGG | 0.428895 | 3_2:+9942637 | Msa0394760:CDS |
| AGGTTAGGCGGTTTGAACTT+TGG | 0.449468 | 3_2:+9944266 | Msa0394760:CDS |
| TATTGCATCAAATATTCAAA+TGG | 0.455477 | 3_2:-9946745 | None:intergenic |
| TCGTTCTTGCTCGCATCGCA+GGG | 0.456280 | 3_2:+9944602 | Msa0394760:CDS |
| TTGTTAACTGCAGCTTAACT+TGG | 0.472009 | 3_2:+9945703 | Msa0394760:intron |
| GCTGAAAGTCCTCGAAGGTT+AGG | 0.476875 | 3_2:+9944251 | Msa0394760:CDS |
| CTGATTGATATAAGCCAAGC+TGG | 0.477613 | 3_2:-9944558 | None:intergenic |
| TCAAACCATTCCTGATTGAA+AGG | 0.479488 | 3_2:+9946443 | Msa0394760:CDS |
| TGGTTTGCTTGGACCAATGA+AGG | 0.480844 | 3_2:+9942669 | Msa0394760:CDS |
| TTCAAACCGCCTAACCTTCG+AGG | 0.482253 | 3_2:-9944260 | None:intergenic |
| TGCAAGGTAATTGGTCCAGC+TGG | 0.484350 | 3_2:+9945162 | Msa0394760:CDS |
| GGTATTATAATGTTCCAGCT+TGG | 0.489803 | 3_2:+9944544 | Msa0394760:CDS |
| AGTTCCTATGCTGGTTATGT+AGG | 0.490127 | 3_2:+9942011 | Msa0394760:CDS |
| CATCAAAGAGGGGTAGCAAA+TGG | 0.491220 | 3_2:+9945114 | Msa0394760:CDS |
| GGAATGATAGCCGATCGATA+TGG | 0.497082 | 3_2:+9942167 | Msa0394760:CDS |
| GCCTGACAACATTGTCATGA+AGG | 0.501401 | 3_2:-9944744 | None:intergenic |
| TATCCTAACAACAATACCAT+TGG | 0.506017 | 3_2:+9946574 | Msa0394760:three_prime_UTR |
| TATTATCATGAGAATTGTCC+TGG | 0.510827 | 3_2:+9940449 | Msa0394760:CDS |
| ACGATGAGATTCGTTCTTGG+AGG | 0.516830 | 3_2:+9942640 | Msa0394760:CDS |
| AACAGGATCAACATCAAAGA+GGG | 0.518590 | 3_2:+9945103 | Msa0394760:intron |
| ATCCACTTACTTATCCCAAA+AGG | 0.518714 | 3_2:-9943561 | None:intergenic |
| ACAATGATAGATGACATTAA+GGG | 0.519109 | 3_2:-9944061 | None:intergenic |
| ATAGGATCTGCCTACATGCT+TGG | 0.519702 | 3_2:+9942119 | Msa0394760:intron |
| GAAGATATCAGTTCCTATGC+TGG | 0.522329 | 3_2:+9942002 | Msa0394760:CDS |
| TATGGAAATAGAGATGCTAT+AGG | 0.523760 | 3_2:-9940824 | None:intergenic |
| AACTGCTATGTCAGCATGCA+AGG | 0.527847 | 3_2:+9945146 | Msa0394760:CDS |
| GGTTTCCTTTCAATCAGGAA+TGG | 0.529756 | 3_2:-9946448 | None:intergenic |
| GTGCTTCATTGTCTCAGCTA+TGG | 0.532311 | 3_2:+9943697 | Msa0394760:CDS |
| TATCACTCACCATGAAATAG+AGG | 0.534625 | 3_2:-9940847 | None:intergenic |
| ATTTAGGAGATAATTTCTAC+TGG | 0.534952 | 3_2:+9944970 | Msa0394760:intron |
| AACTTTGGAACTAATGATGT+CGG | 0.538262 | 3_2:+9944281 | Msa0394760:CDS |
| TATCAGTGAAACTGCTCTGA+GGG | 0.538842 | 3_2:-9946472 | None:intergenic |
| ACATACTGGTAGCCAAATGC+AGG | 0.547142 | 3_2:-9943738 | None:intergenic |
| CTCACCATGAAATAGAGGTA+TGG | 0.553655 | 3_2:-9940842 | None:intergenic |
| GCTTAACTTGGTCACAAAAG+AGG | 0.553665 | 3_2:+9945715 | Msa0394760:intron |
| ATGGATGCTTCTTACCTCCC+AGG | 0.560148 | 3_2:+9945738 | Msa0394760:CDS |
| CCTGACAACATTGTCATGAA+GGG | 0.568076 | 3_2:-9944743 | None:intergenic |
| GTAATTGGTCCAGCTGGAGG+CGG | 0.574346 | 3_2:+9945168 | Msa0394760:CDS |
| AAGTTTGGATGACTACTCGT+TGG | 0.578331 | 3_2:+9946612 | Msa0394760:intron |
| GAGCACAAAGAAAACCAGAT+GGG | 0.587663 | 3_2:-9946386 | None:intergenic |
| CGAAGCTCTACCAAGCATGT+AGG | 0.590397 | 3_2:-9942129 | None:intergenic |
| ATATCCAAATATATTTCCAA+AGG | 0.595947 | 3_2:+9943535 | Msa0394760:CDS |
| CTTACCTACATAACCAGCAT+AGG | 0.599814 | 3_2:-9942015 | None:intergenic |
| TAAGTCAATCTGCTATCCAA+TGG | 0.606103 | 3_2:-9946590 | None:intergenic |
| TCAGTGAAACTGCTCTGAGG+GGG | 0.608467 | 3_2:-9946470 | None:intergenic |
| AGCACAAAGAAAACCAGATG+GGG | 0.612418 | 3_2:-9946385 | None:intergenic |
| AACTTGGTCACAAAAGAGGA+TGG | 0.617641 | 3_2:+9945719 | Msa0394760:CDS |
| GCGATGCGAGCAAGAACGAT+AGG | 0.621644 | 3_2:-9944598 | None:intergenic |
| TTGCCATAGAATGTCAGCAA+AGG | 0.621840 | 3_2:+9946547 | Msa0394760:three_prime_UTR |
| CGTTCTTGCTCGCATCGCAG+GGG | 0.626575 | 3_2:+9944603 | Msa0394760:CDS |
| GCTTCGACATCTATATTATG+GGG | 0.629817 | 3_2:+9942146 | Msa0394760:CDS |
| TGAGCACAAAGAAAACCAGA+TGG | 0.634471 | 3_2:-9946387 | None:intergenic |
| AAACAGGATCAACATCAAAG+AGG | 0.635198 | 3_2:+9945102 | Msa0394760:intron |
| GAAAGTCCTCGAAGGTTAGG+CGG | 0.636675 | 3_2:+9944254 | Msa0394760:CDS |
| CTGACAACATTGTCATGAAG+GGG | 0.644243 | 3_2:-9944742 | None:intergenic |
| AAGGTAATTGGTCCAGCTGG+AGG | 0.645237 | 3_2:+9945165 | Msa0394760:CDS |
| TTTAGAAAATGGAACCAATG+AGG | 0.646034 | 3_2:+9943988 | Msa0394760:CDS |
| CAGTGAAACTGCTCTGAGGG+GGG | 0.648625 | 3_2:-9946469 | None:intergenic |
| GTATCAGTGAAACTGCTCTG+AGG | 0.650430 | 3_2:-9946473 | None:intergenic |
| CATTCTGCAAAATAAAGCAG+TGG | 0.656635 | 3_2:+9944999 | Msa0394760:CDS |
| ATCAGTGAAACTGCTCTGAG+GGG | 0.664864 | 3_2:-9946471 | None:intergenic |
| GGTGAAATATTATAGCAACT+GGG | 0.677249 | 3_2:+9946516 | Msa0394760:three_prime_UTR |
| TATGGGCTGAAAGTCCTCGA+AGG | 0.690573 | 3_2:+9944246 | Msa0394760:CDS |
| AGTTGAGAGTTATACCTGGG+AGG | 0.691821 | 3_2:-9945752 | None:intergenic |
| ACAGGATCAACATCAAAGAG+GGG | 0.699202 | 3_2:+9945104 | Msa0394760:intron |
| ATAGCTGAGACAATGAAGCA+CGG | 0.701964 | 3_2:-9943695 | None:intergenic |
| GCACAAAGAAAACCAGATGG+GGG | 0.709624 | 3_2:-9946384 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATAAATATTCACAAATTT+TGG | + | chr3_2:9940991-9941010 | Msa0394760:intron | 10.0% |
| !!! | AATTAAAAGATTCTTTAAAA+TGG | - | chr3_2:9944801-9944820 | None:intergenic | 10.0% |
| !! | TTATTTATAATTCAAATAGA+AGG | - | chr3_2:9945224-9945243 | None:intergenic | 10.0% |
| !! | AAAATATGAAATATTTGAAT+GGG | - | chr3_2:9945510-9945529 | None:intergenic | 10.0% |
| !!! | TTAGAAATGTTTTCAATATA+TGG | + | chr3_2:9940516-9940535 | Msa0394760:intron | 15.0% |
| !!! | TATGTTAATTTTTCAGATTT+TGG | + | chr3_2:9941110-9941129 | Msa0394760:intron | 15.0% |
| !!! | TTGAAATTTGTAATTTTCAT+TGG | - | chr3_2:9941650-9941669 | None:intergenic | 15.0% |
| !! | AATAGATAATTACATACTTA+AGG | + | chr3_2:9941821-9941840 | Msa0394760:intron | 15.0% |
| !! | ATAGATAATTACATACTTAA+GGG | + | chr3_2:9941822-9941841 | Msa0394760:intron | 15.0% |
| !! | TTTGATTGTAAAAATGTTAT+AGG | + | chr3_2:9942101-9942120 | Msa0394760:intron | 15.0% |
| !!! | AAGTACTTTTAATGTTTTTT+TGG | + | chr3_2:9942305-9942324 | Msa0394760:intron | 15.0% |
| !!! | AGTACTTTTAATGTTTTTTT+GGG | + | chr3_2:9942306-9942325 | Msa0394760:intron | 15.0% |
| !! | AAAACACTATATTAAATGTT+TGG | + | chr3_2:9942700-9942719 | Msa0394760:intron | 15.0% |
| !! | TTCAAAAAAATGATAAACAA+AGG | - | chr3_2:9942860-9942879 | None:intergenic | 15.0% |
| !! | TCTAGATATTTATTAAGATT+AGG | + | chr3_2:9944348-9944367 | Msa0394760:intron | 15.0% |
| !! | CATATGACTTATTATATATT+TGG | + | chr3_2:9945078-9945097 | Msa0394760:intron | 15.0% |
| !! | TTATTATATATTTGGAAAAC+AGG | + | chr3_2:9945086-9945105 | Msa0394760:intron | 15.0% |
| !! | CAAAATATGAAATATTTGAA+TGG | - | chr3_2:9945511-9945530 | None:intergenic | 15.0% |
| !! | CATAAAATTTGAAAACATAT+TGG | - | chr3_2:9946771-9946790 | None:intergenic | 15.0% |
| !!! | AACATCTTTTTTTAATTCCT+TGG | - | chr3_2:9940492-9940511 | None:intergenic | 20.0% |
| !! | GTGAATATTTATTACAAAGA+TGG | - | chr3_2:9940985-9941004 | None:intergenic | 20.0% |
| !!! | CTCATTTTTGTTTTTTAGAT+AGG | + | chr3_2:9941072-9941091 | Msa0394760:intron | 20.0% |
| !! | TTGTGAATTATATTGTATTC+AGG | - | chr3_2:9941798-9941817 | None:intergenic | 20.0% |
| !! | TATATCCTCAATATATAATC+AGG | + | chr3_2:9941950-9941969 | Msa0394760:intron | 20.0% |
| !!! | ATTAAGTTGTTTATCCAAAA+AGG | + | chr3_2:9942516-9942535 | Msa0394760:intron | 20.0% |
| !!! | TTAAGTTGTTTATCCAAAAA+GGG | + | chr3_2:9942517-9942536 | Msa0394760:intron | 20.0% |
| !!! | ATGTCTTGTTATAATATCAA+TGG | + | chr3_2:9942545-9942564 | Msa0394760:intron | 20.0% |
| !!! | TGATTTTCTCAAATTATTAG+TGG | - | chr3_2:9940696-9940715 | None:intergenic | 20.0% |
| !! | AATTTGAATCATTACAACAA+TGG | - | chr3_2:9943066-9943085 | None:intergenic | 20.0% |
| !! | TCAAATTATAATCTGATTTC+AGG | + | chr3_2:9943079-9943098 | Msa0394760:intron | 20.0% |
| !! | TATTTAGACCTATCTAAATT+TGG | - | chr3_2:9943294-9943313 | None:intergenic | 20.0% |
| !! | GAAAATAGAGCTTATATTTA+GGG | - | chr3_2:9943346-9943365 | None:intergenic | 20.0% |
| !! | TGAAAATAGAGCTTATATTT+AGG | - | chr3_2:9943347-9943366 | None:intergenic | 20.0% |
| !! | ACGAATTAGTAGTATTAATA+AGG | - | chr3_2:9943379-9943398 | None:intergenic | 20.0% |
| !!! | TTTGGAATAGAGTATTAATA+AGG | - | chr3_2:9943432-9943451 | None:intergenic | 20.0% |
| !! | ATTAATACTCTATTCCAAAT+TGG | + | chr3_2:9943433-9943452 | Msa0394760:intron | 20.0% |
| !! | TTAATACTCTATTCCAAATT+GGG | + | chr3_2:9943434-9943453 | Msa0394760:intron | 20.0% |
| !! | ATATCCAAATATATTTCCAA+AGG | + | chr3_2:9943535-9943554 | Msa0394760:CDS | 20.0% |
| !! | ATAAAAAGGATACTGAAATA+TGG | - | chr3_2:9943866-9943885 | None:intergenic | 20.0% |
| !!! | AAAATTGAAGCTTTAGAAAA+TGG | + | chr3_2:9943977-9943996 | Msa0394760:CDS | 20.0% |
| !!! | TTTTGAAGATTTTCTCATTA+TGG | + | chr3_2:9944228-9944247 | Msa0394760:intron | 20.0% |
| !!! | TTTGAAGATTTTCTCATTAT+GGG | + | chr3_2:9944229-9944248 | Msa0394760:intron | 20.0% |
| !!! | ATCTGATTATTTGTTACAAA+AGG | - | chr3_2:9944639-9944658 | None:intergenic | 20.0% |
| !! | TGTCTTTATCATATATTTGT+AGG | + | chr3_2:9944691-9944710 | Msa0394760:intron | 20.0% |
| !!! | TTTAGTAAGAAAGTATTCAA+TGG | + | chr3_2:9945374-9945393 | Msa0394760:intron | 20.0% |
| !! | TATAACATTGTAGTGTAAAA+AGG | - | chr3_2:9945650-9945669 | None:intergenic | 20.0% |
| !! | ATAATTGCTTAATTAGACTA+AGG | - | chr3_2:9945823-9945842 | None:intergenic | 20.0% |
| !! | TAGTCTAATTAAGCAATTAT+TGG | + | chr3_2:9945823-9945842 | Msa0394760:intron | 20.0% |
| !! | TATTGCATCAAATATTCAAA+TGG | - | chr3_2:9946748-9946767 | None:intergenic | 20.0% |
| ! | TTCATGTCTATGATATAACA+TGG | + | chr3_2:9941029-9941048 | Msa0394760:intron | 25.0% |
| !! | GCTTCTAAATAAAGTTTTTG+AGG | + | chr3_2:9941416-9941435 | Msa0394760:intron | 25.0% |
| !!! | AAGACAATTTTGACTAAATG+CGG | - | chr3_2:9941482-9941501 | None:intergenic | 25.0% |
| ! | CAAAATTGTCTTCAATATCA+AGG | + | chr3_2:9941490-9941509 | Msa0394760:intron | 25.0% |
| !! | GATTTTGTGTATTTCATAAC+AGG | - | chr3_2:9941890-9941909 | None:intergenic | 25.0% |
| ! | CTTTACCTGATTATATATTG+AGG | - | chr3_2:9941958-9941977 | None:intergenic | 25.0% |
| ! | CTCAATATATAATCAGGTAA+AGG | + | chr3_2:9941956-9941975 | Msa0394760:intron | 25.0% |
| ! | ATAATTCCTATTATCACAAC+AGG | - | chr3_2:9942200-9942219 | None:intergenic | 25.0% |
| !! | GTTAATTTGAGCTTATTTAC+TGG | + | chr3_2:9942279-9942298 | Msa0394760:intron | 25.0% |
| !! | AAAATAAGTTGAAAACAGCT+TGG | - | chr3_2:9942363-9942382 | None:intergenic | 25.0% |
| !! | GTAATTTTCAACACACTATT+TGG | + | chr3_2:9942589-9942608 | Msa0394760:CDS | 25.0% |
| ! | AAGAATAAGCCTATTAATGA+AGG | - | chr3_2:9942779-9942798 | None:intergenic | 25.0% |
| ! | AAACAATTCAGAAAAAGACA+TGG | + | chr3_2:9943205-9943224 | Msa0394760:intron | 25.0% |
| !! | TTCATTTTCTTTTCCCAATT+TGG | - | chr3_2:9943450-9943469 | None:intergenic | 25.0% |
| !! | ATATTTGGATATTTCTGTAC+TGG | - | chr3_2:9943527-9943546 | None:intergenic | 25.0% |
| !! | GAATCCTTTGGAAATATATT+TGG | - | chr3_2:9943542-9943561 | None:intergenic | 25.0% |
| !!! | GATTAGAGTTTGTTTTAAGA+TGG | - | chr3_2:9943593-9943612 | None:intergenic | 25.0% |
| ! | ACTAATGAACAGATAAATGT+TGG | - | chr3_2:9943774-9943793 | None:intergenic | 25.0% |
| !! | ATTTCAGTATCCTTTTTATG+TGG | + | chr3_2:9943867-9943886 | Msa0394760:intron | 25.0% |
| !! | TATCCTTTTTATGTGGTTTT+CGG | + | chr3_2:9943874-9943893 | Msa0394760:intron | 25.0% |
| !!! | TTTAGATCATTAGTACTGAT+AGG | - | chr3_2:9943906-9943925 | None:intergenic | 25.0% |
| !!! | TTCTAAAGCTTCAATTTTGT+TGG | - | chr3_2:9943975-9943994 | None:intergenic | 25.0% |
| !! | ATGAAAGCCTTCTAAAAAAT+TGG | + | chr3_2:9944038-9944057 | Msa0394760:CDS | 25.0% |
| ! | ACAATGATAGATGACATTAA+GGG | - | chr3_2:9944064-9944083 | None:intergenic | 25.0% |
| ! | AACAATGATAGATGACATTA+AGG | - | chr3_2:9944065-9944084 | None:intergenic | 25.0% |
| ! | AAACAGAAACATCTTTAAGT+AGG | - | chr3_2:9944138-9944157 | None:intergenic | 25.0% |
| ! | TATCATTCATTGGAGATAAA+GGG | - | chr3_2:9944393-9944412 | None:intergenic | 25.0% |
| ! | CTTGATCAATGAATCAAAAA+TGG | + | chr3_2:9944464-9944483 | Msa0394760:intron | 25.0% |
| ! | CAATCAGTTCAAAAAATTTG+TGG | + | chr3_2:9944574-9944593 | Msa0394760:CDS | 25.0% |
| !! | ACTAACTGTTTTCTTTTTGA+TGG | + | chr3_2:9944947-9944966 | Msa0394760:intron | 25.0% |
| !!! | GTTTTCTTTTTGATGGATTT+AGG | + | chr3_2:9944954-9944973 | Msa0394760:intron | 25.0% |
| ! | ATTTAGGAGATAATTTCTAC+TGG | + | chr3_2:9944970-9944989 | Msa0394760:intron | 25.0% |
| !! | TCCAAACAGAACTTTTTAAA+GGG | - | chr3_2:9945046-9945065 | None:intergenic | 25.0% |
| !! | TTCCAAACAGAACTTTTTAA+AGG | - | chr3_2:9945047-9945066 | None:intergenic | 25.0% |
| ! | AAATATGCAATGACAAGAAA+TGG | - | chr3_2:9945356-9945375 | None:intergenic | 25.0% |
| ! | TTGCATTTCTGAACTAAAAA+TGG | - | chr3_2:9945925-9945944 | None:intergenic | 25.0% |
| ! | CTTAGTATTGTTGAAAAATG+TGG | - | chr3_2:9945977-9945996 | None:intergenic | 25.0% |
| !!! | TTTGGTTTTGTTTTGTTGAT+AGG | + | chr3_2:9946128-9946147 | Msa0394760:intron | 25.0% |
| !! | TTTGTGCTCAATTTTATTGA+AGG | + | chr3_2:9946400-9946419 | Msa0394760:CDS | 25.0% |
| !!! | CTAACGTTATTTTGCAAAAT+TGG | + | chr3_2:9946495-9946514 | Msa0394760:three_prime_UTR | 25.0% |
| ! | AATTTGCATCATGCAAATTT+GGG | + | chr3_2:9946635-9946654 | Msa0394760:three_prime_UTR | 25.0% |
| TATTATCATGAGAATTGTCC+TGG | + | chr3_2:9940449-9940468 | Msa0394760:CDS | 30.0% | |
| TTCAGTGTAATTGTATGTGT+CGG | - | chr3_2:9940671-9940690 | None:intergenic | 30.0% | |
| CAAAGTGAGTAATTAGTGAT+AGG | - | chr3_2:9940767-9940786 | None:intergenic | 30.0% | |
| TATGGAAATAGAGATGCTAT+AGG | - | chr3_2:9940827-9940846 | None:intergenic | 30.0% | |
| ATTTCCATACCTCTATTTCA+TGG | + | chr3_2:9940838-9940857 | Msa0394760:CDS | 30.0% | |
| ATGTGAGATAAAGACATAAC+AGG | - | chr3_2:9940883-9940902 | None:intergenic | 30.0% | |
| !! | ATTTTTCAGATTTTGGACTG+TGG | + | chr3_2:9941117-9941136 | Msa0394760:intron | 30.0% |
| CAGGTTAATATAGAGGTAAA+GGG | - | chr3_2:9941597-9941616 | None:intergenic | 30.0% | |
| !!! | TTTTTTGATGAATGCTTCTG+AGG | - | chr3_2:9941740-9941759 | None:intergenic | 30.0% |
| GTATTCAGGAATAACATTGA+AGG | - | chr3_2:9941784-9941803 | None:intergenic | 30.0% | |
| AGCTTCGACATCTATATTAT+GGG | + | chr3_2:9942145-9942164 | Msa0394760:CDS | 30.0% | |
| TGTAAGTATATATGCAACTG+AGG | + | chr3_2:9942225-9942244 | Msa0394760:intron | 30.0% | |
| !! | GTTTTGAATGATACCTTCAT+TGG | - | chr3_2:9942685-9942704 | None:intergenic | 30.0% |
| TGTGTATACTTGAATATCTC+AGG | + | chr3_2:9942724-9942743 | Msa0394760:intron | 30.0% | |
| TCATAACCTCCTTCATTAAT+AGG | + | chr3_2:9942767-9942786 | Msa0394760:intron | 30.0% | |
| AATAAGCCTATTAATGAAGG+AGG | - | chr3_2:9942776-9942795 | None:intergenic | 30.0% | |
| TCTCAAATTATTAGTGGTGT+CGG | - | chr3_2:9942946-9942965 | None:intergenic | 30.0% | |
| !!! | TGGCTCAGGTAATATTTTTT+TGG | + | chr3_2:9943157-9943176 | Msa0394760:intron | 30.0% |
| !! | CTGAATTGTTTTATACCAGA+AGG | - | chr3_2:9943196-9943215 | None:intergenic | 30.0% |
| !! | AAAAGACATGGATTTTAACC+TGG | + | chr3_2:9943217-9943236 | Msa0394760:intron | 30.0% |
| ! | ATTCGTTTTCGAAGATGAAA+AGG | + | chr3_2:9943393-9943412 | Msa0394760:intron | 30.0% |
| ! | TATTTCCAAAGGATTCCTTT+TGG | + | chr3_2:9943546-9943565 | Msa0394760:CDS | 30.0% |
| ! | ATTTCCAAAGGATTCCTTTT+GGG | + | chr3_2:9943547-9943566 | Msa0394760:CDS | 30.0% |
| !! | TTGGACTTTAAGATACATAC+TGG | - | chr3_2:9943755-9943774 | None:intergenic | 30.0% |
| GAACTCACACAATATAAAGA+GGG | - | chr3_2:9943811-9943830 | None:intergenic | 30.0% | |
| AGAACTCACACAATATAAAG+AGG | - | chr3_2:9943812-9943831 | None:intergenic | 30.0% | |
| AAACCGAAAACCACATAAAA+AGG | - | chr3_2:9943880-9943899 | None:intergenic | 30.0% | |
| TTTAGAAAATGGAACCAATG+AGG | + | chr3_2:9943988-9944007 | Msa0394760:CDS | 30.0% | |
| !! | CTTATTTTTCTCATCCTCAT+TGG | - | chr3_2:9944005-9944024 | None:intergenic | 30.0% |
| ! | TTAGAAGGCTTTCATCTTTT+TGG | - | chr3_2:9944033-9944052 | None:intergenic | 30.0% |
| !!! | TTAAGGGCCAATTTTTTAGA+AGG | - | chr3_2:9944048-9944067 | None:intergenic | 30.0% |
| !! | AACTTTGGAACTAATGATGT+CGG | + | chr3_2:9944281-9944300 | Msa0394760:CDS | 30.0% |
| ! | ACTTGCACGTAAACTTTTAT+GGG | + | chr3_2:9944415-9944434 | Msa0394760:intron | 30.0% |
| ! | GAACCATATTAAACTTGTTC+AGG | + | chr3_2:9944517-9944536 | Msa0394760:intron | 30.0% |
| ACACCTGAACAAGTTTAATA+TGG | - | chr3_2:9944523-9944542 | None:intergenic | 30.0% | |
| ! | TATTAAACTTGTTCAGGTGT+TGG | + | chr3_2:9944523-9944542 | Msa0394760:intron | 30.0% |
| !! | CCAAACAGAACTTTTTAAAG+GGG | - | chr3_2:9945045-9945064 | None:intergenic | 30.0% |
| TAGAAGGTAACGAAATCAAA+GGG | - | chr3_2:9945208-9945227 | None:intergenic | 30.0% | |
| ATAGAAGGTAACGAAATCAA+AGG | - | chr3_2:9945209-9945228 | None:intergenic | 30.0% | |
| TAGTTACTTCTGTTTGAACT+CGG | - | chr3_2:9945331-9945350 | None:intergenic | 30.0% | |
| ATAGAGATTAGGTCATAAAG+GGG | - | chr3_2:9945412-9945431 | None:intergenic | 30.0% | |
| CATAGAGATTAGGTCATAAA+GGG | - | chr3_2:9945413-9945432 | None:intergenic | 30.0% | |
| ACATAGAGATTAGGTCATAA+AGG | - | chr3_2:9945414-9945433 | None:intergenic | 30.0% | |
| GTTAGTGTTACATAGAGATT+AGG | - | chr3_2:9945423-9945442 | None:intergenic | 30.0% | |
| ATTAGTTGAGAGTTATACCT+GGG | - | chr3_2:9945758-9945777 | None:intergenic | 30.0% | |
| AATTAGTTGAGAGTTATACC+TGG | - | chr3_2:9945759-9945778 | None:intergenic | 30.0% | |
| !! | ACTCTCAACTAATTTGTTTG+AGG | + | chr3_2:9945765-9945784 | Msa0394760:intron | 30.0% |
| ! | CTTTATCTTTTCTCTACTCA+CGG | + | chr3_2:9945896-9945915 | Msa0394760:intron | 30.0% |
| TGCAATTGTAGCTTAATCAA+TGG | + | chr3_2:9945940-9945959 | Msa0394760:intron | 30.0% | |
| ! | AACATTTTAAACTGTGGTAG+CGG | - | chr3_2:9946025-9946044 | None:intergenic | 30.0% |
| ! | TAGCTCAACATTTTAAACTG+TGG | - | chr3_2:9946031-9946050 | None:intergenic | 30.0% |
| GTTGAGCTAAAGAAAAAGAA+AGG | + | chr3_2:9946042-9946061 | Msa0394760:intron | 30.0% | |
| TGGTGAAATATTATAGCAAC+TGG | + | chr3_2:9946515-9946534 | Msa0394760:three_prime_UTR | 30.0% | |
| GGTGAAATATTATAGCAACT+GGG | + | chr3_2:9946516-9946535 | Msa0394760:three_prime_UTR | 30.0% | |
| TATCCTAACAACAATACCAT+TGG | + | chr3_2:9946574-9946593 | Msa0394760:three_prime_UTR | 30.0% | |
| ! | TATCCAATGGTATTGTTGTT+AGG | - | chr3_2:9946580-9946599 | None:intergenic | 30.0% |
| ! | ATAGCAGATTGACTTAAGTT+TGG | + | chr3_2:9946597-9946616 | Msa0394760:intron | 30.0% |
| GAATTTGCATCATGCAAATT+TGG | + | chr3_2:9946634-9946653 | Msa0394760:three_prime_UTR | 30.0% | |
| TTAGTTGAGTTTGGATTGAT+TGG | + | chr3_2:9946720-9946739 | Msa0394760:three_prime_UTR | 30.0% | |
| GTGATAGGAACTATGAAACA+CGG | - | chr3_2:9940752-9940771 | None:intergenic | 35.0% | |
| TATCACTCACCATGAAATAG+AGG | - | chr3_2:9940850-9940869 | None:intergenic | 35.0% | |
| TGTCATGAAAAATTGACGAG+AGG | + | chr3_2:9941210-9941229 | Msa0394760:intron | 35.0% | |
| GAAGAAGAAGAAAGAACTCT+CGG | - | chr3_2:9941302-9941321 | None:intergenic | 35.0% | |
| TGCAATTACGGTCACAAAAT+AGG | - | chr3_2:9941449-9941468 | None:intergenic | 35.0% | |
| GCAGGTTAATATAGAGGTAA+AGG | - | chr3_2:9941598-9941617 | None:intergenic | 35.0% | |
| TTCATCCATAACTTCATCAC+AGG | - | chr3_2:9941620-9941639 | None:intergenic | 35.0% | |
| ACATACTTAAGGGCTTACAA+TGG | + | chr3_2:9941832-9941851 | Msa0394760:intron | 35.0% | |
| GAGCTTCGACATCTATATTA+TGG | + | chr3_2:9942144-9942163 | Msa0394760:CDS | 35.0% | |
| GCTTCGACATCTATATTATG+GGG | + | chr3_2:9942146-9942165 | Msa0394760:CDS | 35.0% | |
| CGAAAACCTGTTGTGATAAT+AGG | + | chr3_2:9942191-9942210 | Msa0394760:CDS | 35.0% | |
| AAGTATATATGCAACTGAGG+TGG | + | chr3_2:9942228-9942247 | Msa0394760:intron | 35.0% | |
| ATACGTTGTACAGAATAGCT+TGG | + | chr3_2:9942384-9942403 | Msa0394760:intron | 35.0% | |
| TACGTTGTACAGAATAGCTT+GGG | + | chr3_2:9942385-9942404 | Msa0394760:intron | 35.0% | |
| TTCGTTCTTGGAGGTTTAAA+TGG | + | chr3_2:9942649-9942668 | Msa0394760:CDS | 35.0% | |
| AGAGAAGAATACCATGCTTT+AGG | + | chr3_2:9942810-9942829 | Msa0394760:intron | 35.0% | |
| ACCAAATCAACTATGAAGCA+CGG | + | chr3_2:9942879-9942898 | Msa0394760:intron | 35.0% | |
| TATGAAGTATGAACACTCCT+CGG | - | chr3_2:9943035-9943054 | None:intergenic | 35.0% | |
| ATACAAGTTATCTCAAGTCC+AGG | - | chr3_2:9943238-9943257 | None:intergenic | 35.0% | |
| TCTAAATTTGGAGACACAGA+TGG | - | chr3_2:9943282-9943301 | None:intergenic | 35.0% | |
| CTGTGTCTCCAAATTTAGAT+AGG | + | chr3_2:9943283-9943302 | Msa0394760:intron | 35.0% | |
| TTATCCCAAAAGGAATCCTT+TGG | - | chr3_2:9943554-9943573 | None:intergenic | 35.0% | |
| !!! | TTCCTTTTGGGATAAGTAAG+TGG | + | chr3_2:9943559-9943578 | Msa0394760:intron | 35.0% |
| ATCCACTTACTTATCCCAAA+AGG | - | chr3_2:9943564-9943583 | None:intergenic | 35.0% | |
| ! | AAGAAGTATGGAAACCTGTA+GGG | - | chr3_2:9943674-9943693 | None:intergenic | 35.0% |
| TAGTAGCAATTTCCTGCATT+TGG | + | chr3_2:9943726-9943745 | Msa0394760:CDS | 35.0% | |
| ! | TAAAACATCTGCATCGATGT+AGG | + | chr3_2:9943922-9943941 | Msa0394760:intron | 35.0% |
| !! | TCATGATATTGCTTTTGCAG+AGG | + | chr3_2:9944102-9944121 | Msa0394760:CDS | 35.0% |
| GGTAATATTCTTGCAGTATC+AGG | + | chr3_2:9944302-9944321 | Msa0394760:CDS | 35.0% | |
| TTCATTGGAGATAAAGGGTT+AGG | - | chr3_2:9944388-9944407 | None:intergenic | 35.0% | |
| ! | CACTTGCACGTAAACTTTTA+TGG | + | chr3_2:9944414-9944433 | Msa0394760:intron | 35.0% |
| GGTATTATAATGTTCCAGCT+TGG | + | chr3_2:9944544-9944563 | Msa0394760:CDS | 35.0% | |
| ! | AATTGACTTCGCTAAAACTC+AGG | + | chr3_2:9944880-9944899 | Msa0394760:intron | 35.0% |
| CATTCTGCAAAATAAAGCAG+TGG | + | chr3_2:9944999-9945018 | Msa0394760:CDS | 35.0% | |
| ! | CCCCTTTAAAAAGTTCTGTT+TGG | + | chr3_2:9945042-9945061 | Msa0394760:intron | 35.0% |
| AAACAGGATCAACATCAAAG+AGG | + | chr3_2:9945102-9945121 | Msa0394760:intron | 35.0% | |
| AACAGGATCAACATCAAAGA+GGG | + | chr3_2:9945103-9945122 | Msa0394760:intron | 35.0% | |
| CATGTAGAACACACATGTTA+AGG | - | chr3_2:9945252-9945271 | None:intergenic | 35.0% | |
| ACACTAACACTTCAGATTGA+AGG | + | chr3_2:9945435-9945454 | Msa0394760:intron | 35.0% | |
| GCAATTAGACTATGAAACAC+TGG | - | chr3_2:9945550-9945569 | None:intergenic | 35.0% | |
| TTGTTAACTGCAGCTTAACT+TGG | + | chr3_2:9945703-9945722 | Msa0394760:intron | 35.0% | |
| CTATGTGACAATGTAGAGTT+TGG | - | chr3_2:9946161-9946180 | None:intergenic | 35.0% | |
| CTACAGAGTCATTAGAGTTA+AGG | + | chr3_2:9946301-9946320 | Msa0394760:intron | 35.0% | |
| ! | ACTTTTGAACATTCAACTGC+AGG | + | chr3_2:9946361-9946380 | Msa0394760:intron | 35.0% |
| TCAAACCATTCCTGATTGAA+AGG | + | chr3_2:9946443-9946462 | Msa0394760:CDS | 35.0% | |
| TAAGTCAATCTGCTATCCAA+TGG | - | chr3_2:9946593-9946612 | None:intergenic | 35.0% | |
| ! | TGCAGTAGATTAGTTGAGTT+TGG | + | chr3_2:9946711-9946730 | Msa0394760:three_prime_UTR | 35.0% |
| TGAGAATTGTCCTGGTTGTA+AGG | + | chr3_2:9940457-9940476 | Msa0394760:intron | 40.0% | |
| GTGTCTGTGCTTCATAGTAT+AGG | - | chr3_2:9940617-9940636 | None:intergenic | 40.0% | |
| ! | GTAATTGTATGTGTCGGTGT+CGG | - | chr3_2:9940665-9940684 | None:intergenic | 40.0% |
| ATTAGCATCTGAGTCGTGTT+CGG | + | chr3_2:9940711-9940730 | Msa0394760:intron | 40.0% | |
| ATGAAACACGGATATGCACA+CGG | - | chr3_2:9940740-9940759 | None:intergenic | 40.0% | |
| CTCACCATGAAATAGAGGTA+TGG | - | chr3_2:9940845-9940864 | None:intergenic | 40.0% | |
| GGACACAAACAATTCTCACA+TGG | - | chr3_2:9940964-9940983 | None:intergenic | 40.0% | |
| ACATGAAACGTATCGCAAGT+AGG | - | chr3_2:9941193-9941212 | None:intergenic | 40.0% | |
| ! | GGTTGATGCAACTGCAATTA+CGG | - | chr3_2:9941461-9941480 | None:intergenic | 40.0% |
| TCACAGGCAGGTTAATATAG+AGG | - | chr3_2:9941604-9941623 | None:intergenic | 40.0% | |
| GAAGATATCAGTTCCTATGC+TGG | + | chr3_2:9942002-9942021 | Msa0394760:CDS | 40.0% | |
| ! | AGTTCCTATGCTGGTTATGT+AGG | + | chr3_2:9942011-9942030 | Msa0394760:CDS | 40.0% |
| CTTACCTACATAACCAGCAT+AGG | - | chr3_2:9942018-9942037 | None:intergenic | 40.0% | |
| ! | AGGTTTTCGACCATATCGAT+CGG | - | chr3_2:9942180-9942199 | None:intergenic | 40.0% |
| ! | CAAGACATTGAAGCCCTTTT+TGG | - | chr3_2:9942533-9942552 | None:intergenic | 40.0% |
| GTTACGATGAGATTCGTTCT+TGG | + | chr3_2:9942637-9942656 | Msa0394760:CDS | 40.0% | |
| !! | GGAGGTTTAAATGGTTTGCT+TGG | + | chr3_2:9942658-9942677 | Msa0394760:CDS | 40.0% |
| CAGTTGATTGTCCTAAAGCA+TGG | - | chr3_2:9942824-9942843 | None:intergenic | 40.0% | |
| TCCGTGCTTCATAGTTGATT+TGG | - | chr3_2:9942883-9942902 | None:intergenic | 40.0% | |
| TCAACTATGAAGCACGGATA+CGG | + | chr3_2:9942885-9942904 | Msa0394760:intron | 40.0% | |
| ! | GGCTTTTCATTTGTTCCTTC+TGG | + | chr3_2:9943178-9943197 | Msa0394760:intron | 40.0% |
| ! | CAAGAAGTATGGAAACCTGT+AGG | - | chr3_2:9943675-9943694 | None:intergenic | 40.0% |
| ATAGCTGAGACAATGAAGCA+CGG | - | chr3_2:9943698-9943717 | None:intergenic | 40.0% | |
| AGATAAAGGGTTAGGAAGGA+AGG | - | chr3_2:9944380-9944399 | None:intergenic | 40.0% | |
| TTGGAGATAAAGGGTTAGGA+AGG | - | chr3_2:9944384-9944403 | None:intergenic | 40.0% | |
| CTGATTGATATAAGCCAAGC+TGG | - | chr3_2:9944561-9944580 | None:intergenic | 40.0% | |
| CTGACAACATTGTCATGAAG+GGG | - | chr3_2:9944745-9944764 | None:intergenic | 40.0% | |
| CCTGACAACATTGTCATGAA+GGG | - | chr3_2:9944746-9944765 | None:intergenic | 40.0% | |
| TTCGCTAAAACTCAGGAGAT+CGG | + | chr3_2:9944887-9944906 | Msa0394760:intron | 40.0% | |
| ACAGGATCAACATCAAAGAG+GGG | + | chr3_2:9945104-9945123 | Msa0394760:intron | 40.0% | |
| ATGTCAGCATGCAAGGTAAT+TGG | + | chr3_2:9945153-9945172 | Msa0394760:CDS | 40.0% | |
| ! | TCAGATTGAAGGTGTGTTTG+TGG | + | chr3_2:9945446-9945465 | Msa0394760:intron | 40.0% |
| ! | GCTTAACTTGGTCACAAAAG+AGG | + | chr3_2:9945715-9945734 | Msa0394760:intron | 40.0% |
| AACTTGGTCACAAAAGAGGA+TGG | + | chr3_2:9945719-9945738 | Msa0394760:CDS | 40.0% | |
| ! | ATTGGTGTCTAATCCACTCA+TGG | + | chr3_2:9945841-9945860 | Msa0394760:intron | 40.0% |
| CCTAATAAACACACCATGAG+TGG | - | chr3_2:9945857-9945876 | None:intergenic | 40.0% | |
| CCACTCATGGTGTGTTTATT+AGG | + | chr3_2:9945854-9945873 | Msa0394760:intron | 40.0% | |
| TGTAACAGCATGTGCCAATA+TGG | + | chr3_2:9946217-9946236 | Msa0394760:intron | 40.0% | |
| ! | ATTGAAGGCATGCTAAGTGT+CGG | - | chr3_2:9946252-9946271 | None:intergenic | 40.0% |
| GCATTGAAACCTTCGATTGA+AGG | - | chr3_2:9946267-9946286 | None:intergenic | 40.0% | |
| AGCACAAAGAAAACCAGATG+GGG | - | chr3_2:9946388-9946407 | None:intergenic | 40.0% | |
| GAGCACAAAGAAAACCAGAT+GGG | - | chr3_2:9946389-9946408 | None:intergenic | 40.0% | |
| TGAGCACAAAGAAAACCAGA+TGG | - | chr3_2:9946390-9946409 | None:intergenic | 40.0% | |
| GGTTTCCTTTCAATCAGGAA+TGG | - | chr3_2:9946451-9946470 | None:intergenic | 40.0% | |
| TATCAGTGAAACTGCTCTGA+GGG | - | chr3_2:9946475-9946494 | None:intergenic | 40.0% | |
| TTGCCATAGAATGTCAGCAA+AGG | + | chr3_2:9946547-9946566 | Msa0394760:three_prime_UTR | 40.0% | |
| TGTCCTTTGCTGACATTCTA+TGG | - | chr3_2:9946553-9946572 | None:intergenic | 40.0% | |
| AAGTTTGGATGACTACTCGT+TGG | + | chr3_2:9946612-9946631 | Msa0394760:intron | 40.0% | |
| GAATTGTCCTGGTTGTAAGG+TGG | + | chr3_2:9940460-9940479 | Msa0394760:intron | 45.0% | |
| TTGTAAGGTGGATCAAGCCA+AGG | + | chr3_2:9940472-9940491 | Msa0394760:intron | 45.0% | |
| TATGAAGCACAGACACTCCT+CGG | + | chr3_2:9940621-9940640 | Msa0394760:intron | 45.0% | |
| !! | ACGTGGAAGGAGTACTAACT+AGG | - | chr3_2:9941147-9941166 | None:intergenic | 45.0% |
| CAGCTAAATTGACGAGCTGA+GGG | - | chr3_2:9941170-9941189 | None:intergenic | 45.0% | |
| TCTCTCTCTCTCTTTCGAAG+AGG | - | chr3_2:9941249-9941268 | None:intergenic | 45.0% | |
| AACTCTCGGAGAAGAAGATG+AGG | - | chr3_2:9941288-9941307 | None:intergenic | 45.0% | |
| ACCTGCCTGTGATGAAGTTA+TGG | + | chr3_2:9941612-9941631 | Msa0394760:intron | 45.0% | |
| TCCATAACTTCATCACAGGC+AGG | - | chr3_2:9941616-9941635 | None:intergenic | 45.0% | |
| ATAGGATCTGCCTACATGCT+TGG | + | chr3_2:9942119-9942138 | Msa0394760:intron | 45.0% | |
| GGAATGATAGCCGATCGATA+TGG | + | chr3_2:9942167-9942186 | Msa0394760:CDS | 45.0% | |
| !! | TTGGCCTTTGCACGAGTTTT+TGG | + | chr3_2:9942608-9942627 | Msa0394760:CDS | 45.0% |
| CCATCCAAAAACTCGTGCAA+AGG | - | chr3_2:9942615-9942634 | None:intergenic | 45.0% | |
| !! | CCTTTGCACGAGTTTTTGGA+TGG | + | chr3_2:9942612-9942631 | Msa0394760:CDS | 45.0% |
| ACGATGAGATTCGTTCTTGG+AGG | + | chr3_2:9942640-9942659 | Msa0394760:CDS | 45.0% | |
| !! | TGGTTTGCTTGGACCAATGA+AGG | + | chr3_2:9942669-9942688 | Msa0394760:CDS | 45.0% |
| !! | ATTTCAGGTTTGCAGCTGCT+TGG | + | chr3_2:9943094-9943113 | Msa0394760:intron | 45.0% |
| !! | TTTCAGGTTTGCAGCTGCTT+GGG | + | chr3_2:9943095-9943114 | Msa0394760:intron | 45.0% |
| ! | TTTGGTCTTTGGACCAGCAT+TGG | + | chr3_2:9943125-9943144 | Msa0394760:intron | 45.0% |
| ! | TTGGTCTTTGGACCAGCATT+GGG | + | chr3_2:9943126-9943145 | Msa0394760:intron | 45.0% |
| ! | ACCAGCATTGGGAGGTTATT+TGG | + | chr3_2:9943137-9943156 | Msa0394760:intron | 45.0% |
| ! | ATTGGGAGGTTATTTGGCTC+AGG | + | chr3_2:9943143-9943162 | Msa0394760:intron | 45.0% |
| CAAAACCTAAACCTCCCTAC+AGG | + | chr3_2:9943657-9943676 | Msa0394760:intron | 45.0% | |
| AAGTATGGAAACCTGTAGGG+AGG | - | chr3_2:9943671-9943690 | None:intergenic | 45.0% | |
| ATGAAGCACGGCAAGAAGTA+TGG | - | chr3_2:9943686-9943705 | None:intergenic | 45.0% | |
| GTGCTTCATTGTCTCAGCTA+TGG | + | chr3_2:9943697-9943716 | Msa0394760:CDS | 45.0% | |
| ACATACTGGTAGCCAAATGC+AGG | - | chr3_2:9943741-9943760 | None:intergenic | 45.0% | |
| AGGTTAGGCGGTTTGAACTT+TGG | + | chr3_2:9944266-9944285 | Msa0394760:CDS | 45.0% | |
| ! | TGGGTTGACATGACGCTATT+TGG | + | chr3_2:9944434-9944453 | Msa0394760:intron | 45.0% |
| AAGGGGAAGCTTTGCAAGAT+AGG | - | chr3_2:9944728-9944747 | None:intergenic | 45.0% | |
| CCCTTCATGACAATGTTGTC+AGG | + | chr3_2:9944743-9944762 | Msa0394760:CDS | 45.0% | |
| GCCTGACAACATTGTCATGA+AGG | - | chr3_2:9944747-9944766 | None:intergenic | 45.0% | |
| GAGCGATATCGAGGTTGAAA+AGG | + | chr3_2:9944852-9944871 | Msa0394760:intron | 45.0% | |
| CATCAAAGAGGGGTAGCAAA+TGG | + | chr3_2:9945114-9945133 | Msa0394760:CDS | 45.0% | |
| AACTGCTATGTCAGCATGCA+AGG | + | chr3_2:9945146-9945165 | Msa0394760:CDS | 45.0% | |
| AGACTATGAAACACTGGCAC+TGG | - | chr3_2:9945544-9945563 | None:intergenic | 45.0% | |
| AGTTGAGAGTTATACCTGGG+AGG | - | chr3_2:9945755-9945774 | None:intergenic | 45.0% | |
| ACTGCTGAAGACTGTAGAAC+AGG | - | chr3_2:9946104-9946123 | None:intergenic | 45.0% | |
| TGTTCTACAGTCTTCAGCAG+TGG | + | chr3_2:9946103-9946122 | Msa0394760:intron | 45.0% | |
| ! | CAGTCTTCAGCAGTGGTTTT+TGG | + | chr3_2:9946110-9946129 | Msa0394760:intron | 45.0% |
| AGCATGTGCCAATATGGTGT+CGG | + | chr3_2:9946223-9946242 | Msa0394760:intron | 45.0% | |
| CTTAGCATGCCTTCAATCGA+AGG | + | chr3_2:9946255-9946274 | Msa0394760:intron | 45.0% | |
| GCACAAAGAAAACCAGATGG+GGG | - | chr3_2:9946387-9946406 | None:intergenic | 45.0% | |
| ! | ATCAGTGAAACTGCTCTGAG+GGG | - | chr3_2:9946474-9946493 | None:intergenic | 45.0% |
| GTATCAGTGAAACTGCTCTG+AGG | - | chr3_2:9946476-9946495 | None:intergenic | 45.0% | |
| GCTTGATCCACCTTACAACC+AGG | - | chr3_2:9940470-9940489 | None:intergenic | 50.0% | |
| GCAGCTAAATTGACGAGCTG+AGG | - | chr3_2:9941171-9941190 | None:intergenic | 50.0% | |
| AGCGATAGTGTGTGTCTGCA+TGG | + | chr3_2:9941374-9941393 | Msa0394760:intron | 50.0% | |
| TGTGTCTGCATGGCTCAGTT+TGG | + | chr3_2:9941384-9941403 | Msa0394760:intron | 50.0% | |
| CGAAGCTCTACCAAGCATGT+AGG | - | chr3_2:9942132-9942151 | None:intergenic | 50.0% | |
| ATGAAGCACGGATACGGACT+CGG | + | chr3_2:9942891-9942910 | Msa0394760:intron | 50.0% | |
| GTCAGTGTCCATGTCGTGTT+TGG | - | chr3_2:9942920-9942939 | None:intergenic | 50.0% | |
| GATTAGACGTGTCACGGTGT+CGG | - | chr3_2:9943013-9943032 | None:intergenic | 50.0% | |
| ! | TCCTCGGATTAGACGTGTCA+CGG | - | chr3_2:9943019-9943038 | None:intergenic | 50.0% |
| ! | TTCAGGTTTGCAGCTGCTTG+GGG | + | chr3_2:9943096-9943115 | Msa0394760:intron | 50.0% |
| ! | TGGGGAGTAGGTTTGGTCTT+TGG | + | chr3_2:9943114-9943133 | Msa0394760:intron | 50.0% |
| GCCAAATAACCTCCCAATGC+TGG | - | chr3_2:9943141-9943160 | None:intergenic | 50.0% | |
| GGAAACCTGTAGGGAGGTTT+AGG | - | chr3_2:9943665-9943684 | None:intergenic | 50.0% | |
| ! | TATGGGCTGAAAGTCCTCGA+AGG | + | chr3_2:9944246-9944265 | Msa0394760:CDS | 50.0% |
| GCTGAAAGTCCTCGAAGGTT+AGG | + | chr3_2:9944251-9944270 | Msa0394760:CDS | 50.0% | |
| GAAAGTCCTCGAAGGTTAGG+CGG | + | chr3_2:9944254-9944273 | Msa0394760:CDS | 50.0% | |
| TTCAAACCGCCTAACCTTCG+AGG | - | chr3_2:9944263-9944282 | None:intergenic | 50.0% | |
| ACAACCAACGAGCGATATCG+AGG | + | chr3_2:9944843-9944862 | Msa0394760:intron | 50.0% | |
| TCAACCTCGATATCGCTCGT+TGG | - | chr3_2:9944850-9944869 | None:intergenic | 50.0% | |
| TGCAAGGTAATTGGTCCAGC+TGG | + | chr3_2:9945162-9945181 | Msa0394760:CDS | 50.0% | |
| AAGGTAATTGGTCCAGCTGG+AGG | + | chr3_2:9945165-9945184 | Msa0394760:CDS | 50.0% | |
| ATGGATGCTTCTTACCTCCC+AGG | + | chr3_2:9945738-9945757 | Msa0394760:CDS | 50.0% | |
| ! | ATGTGCCAATATGGTGTCGG+TGG | + | chr3_2:9946226-9946245 | Msa0394760:intron | 50.0% |
| AGGGGGGTTTCCTTTCAATC+AGG | - | chr3_2:9946456-9946475 | None:intergenic | 50.0% | |
| !! | TCAGTGAAACTGCTCTGAGG+GGG | - | chr3_2:9946473-9946492 | None:intergenic | 50.0% |
| GCACAGACACTCCTCGGATT+AGG | + | chr3_2:9940627-9940646 | Msa0394760:intron | 55.0% | |
| ! | TCCTCGGATTAGGCATGTCC+CGG | + | chr3_2:9940637-9940656 | Msa0394760:intron | 55.0% |
| AATTGACGAGCTGAGGGACG+TGG | - | chr3_2:9941164-9941183 | None:intergenic | 55.0% | |
| CTCGGACACCAAACACGACA+TGG | + | chr3_2:9942909-9942928 | Msa0394760:intron | 55.0% | |
| ACCGTGACACGTCTAATCCG+AGG | + | chr3_2:9943015-9943034 | Msa0394760:intron | 55.0% | |
| TTTGCAGCTGCTTGGGGAGT+AGG | + | chr3_2:9943102-9943121 | Msa0394760:intron | 55.0% | |
| AGCTGCTTGGGGAGTAGGTT+TGG | + | chr3_2:9943107-9943126 | Msa0394760:intron | 55.0% | |
| ! | GTCTTTGGACCAGCATTGGG+AGG | + | chr3_2:9943129-9943148 | Msa0394760:intron | 55.0% |
| GCGATGCGAGCAAGAACGAT+AGG | - | chr3_2:9944601-9944620 | None:intergenic | 55.0% | |
| ATCGTTCTTGCTCGCATCGC+AGG | + | chr3_2:9944601-9944620 | Msa0394760:CDS | 55.0% | |
| TCGTTCTTGCTCGCATCGCA+GGG | + | chr3_2:9944602-9944621 | Msa0394760:CDS | 55.0% | |
| GTAATTGGTCCAGCTGGAGG+CGG | + | chr3_2:9945168-9945187 | Msa0394760:CDS | 55.0% | |
| !! | CAGTGAAACTGCTCTGAGGG+GGG | - | chr3_2:9946472-9946491 | None:intergenic | 55.0% |
| ACCGGGACATGCCTAATCCG+AGG | - | chr3_2:9940641-9940660 | None:intergenic | 60.0% | |
| !! | TATGTGTCGGTGTCGGCACC+GGG | - | chr3_2:9940658-9940677 | None:intergenic | 60.0% |
| !! | GTATGTGTCGGTGTCGGCAC+CGG | - | chr3_2:9940659-9940678 | None:intergenic | 60.0% |
| CGTTCTTGCTCGCATCGCAG+GGG | + | chr3_2:9944603-9944622 | Msa0394760:CDS | 60.0% | |
| GTCGGCCACCGACACCATAT+TGG | - | chr3_2:9946234-9946253 | None:intergenic | 60.0% | |
| TTCAACTGCAGGCCCCCATC+TGG | + | chr3_2:9946372-9946391 | Msa0394760:intron | 60.0% | |
| GACGAGCTGAGGGACGTGGA+AGG | - | chr3_2:9941160-9941179 | None:intergenic | 65.0% | |
| CACATTGCGCCGCCTCCAGC+TGG | - | chr3_2:9945180-9945199 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 9940413 | 9946800 | 9940413 | ID=Msa0394760;Name=Msa0394760 |
| chr3_2 | mRNA | 9940413 | 9946800 | 9940413 | ID=Msa0394760-mRNA-1;Parent=Msa0394760;Name=Msa0394760-mRNA-1;_AED=0.37;_eAED=0.37;_QI=0|0.86|0.93|1|0.66|0.68|16|285|414 |
| chr3_2 | exon | 9940413 | 9940473 | 9940413 | ID=Msa0394760-mRNA-1:exon:2583;Parent=Msa0394760-mRNA-1 |
| chr3_2 | exon | 9940819 | 9940859 | 9940819 | ID=Msa0394760-mRNA-1:exon:2584;Parent=Msa0394760-mRNA-1 |
| chr3_2 | exon | 9941972 | 9942032 | 9941972 | ID=Msa0394760-mRNA-1:exon:2585;Parent=Msa0394760-mRNA-1 |
| chr3_2 | exon | 9942123 | 9942225 | 9942123 | ID=Msa0394760-mRNA-1:exon:2586;Parent=Msa0394760-mRNA-1 |
| chr3_2 | exon | 9942588 | 9942690 | 9942588 | ID=Msa0394760-mRNA-1:exon:2587;Parent=Msa0394760-mRNA-1 |
| chr3_2 | exon | 9943524 | 9943573 | 9943524 | ID=Msa0394760-mRNA-1:exon:2588;Parent=Msa0394760-mRNA-1 |
| chr3_2 | exon | 9943679 | 9943754 | 9943679 | ID=Msa0394760-mRNA-1:exon:2589;Parent=Msa0394760-mRNA-1 |
| chr3_2 | exon | 9943944 | 9944123 | 9943944 | ID=Msa0394760-mRNA-1:exon:2590;Parent=Msa0394760-mRNA-1 |
| chr3_2 | exon | 9944236 | 9944323 | 9944236 | ID=Msa0394760-mRNA-1:exon:2591;Parent=Msa0394760-mRNA-1 |
| chr3_2 | exon | 9944539 | 9944624 | 9944539 | ID=Msa0394760-mRNA-1:exon:2592;Parent=Msa0394760-mRNA-1 |
| chr3_2 | exon | 9944713 | 9944820 | 9944713 | ID=Msa0394760-mRNA-1:exon:2593;Parent=Msa0394760-mRNA-1 |
| chr3_2 | exon | 9944976 | 9945020 | 9944976 | ID=Msa0394760-mRNA-1:exon:2594;Parent=Msa0394760-mRNA-1 |
| chr3_2 | exon | 9945108 | 9945196 | 9945108 | ID=Msa0394760-mRNA-1:exon:2595;Parent=Msa0394760-mRNA-1 |
| chr3_2 | exon | 9945716 | 9945759 | 9945716 | ID=Msa0394760-mRNA-1:exon:2596;Parent=Msa0394760-mRNA-1 |
| chr3_2 | exon | 9946383 | 9946599 | 9946383 | ID=Msa0394760-mRNA-1:exon:2597;Parent=Msa0394760-mRNA-1 |
| chr3_2 | exon | 9946623 | 9946800 | 9946623 | ID=Msa0394760-mRNA-1:exon:2598;Parent=Msa0394760-mRNA-1 |
| chr3_2 | CDS | 9940413 | 9940473 | 9940413 | ID=Msa0394760-mRNA-1:cds;Parent=Msa0394760-mRNA-1 |
| chr3_2 | CDS | 9940819 | 9940859 | 9940819 | ID=Msa0394760-mRNA-1:cds;Parent=Msa0394760-mRNA-1 |
| chr3_2 | CDS | 9941972 | 9942032 | 9941972 | ID=Msa0394760-mRNA-1:cds;Parent=Msa0394760-mRNA-1 |
| chr3_2 | CDS | 9942123 | 9942225 | 9942123 | ID=Msa0394760-mRNA-1:cds;Parent=Msa0394760-mRNA-1 |
| chr3_2 | CDS | 9942588 | 9942690 | 9942588 | ID=Msa0394760-mRNA-1:cds;Parent=Msa0394760-mRNA-1 |
| chr3_2 | CDS | 9943524 | 9943573 | 9943524 | ID=Msa0394760-mRNA-1:cds;Parent=Msa0394760-mRNA-1 |
| chr3_2 | CDS | 9943679 | 9943754 | 9943679 | ID=Msa0394760-mRNA-1:cds;Parent=Msa0394760-mRNA-1 |
| chr3_2 | CDS | 9943944 | 9944123 | 9943944 | ID=Msa0394760-mRNA-1:cds;Parent=Msa0394760-mRNA-1 |
| chr3_2 | CDS | 9944236 | 9944323 | 9944236 | ID=Msa0394760-mRNA-1:cds;Parent=Msa0394760-mRNA-1 |
| chr3_2 | CDS | 9944539 | 9944624 | 9944539 | ID=Msa0394760-mRNA-1:cds;Parent=Msa0394760-mRNA-1 |
| chr3_2 | CDS | 9944713 | 9944820 | 9944713 | ID=Msa0394760-mRNA-1:cds;Parent=Msa0394760-mRNA-1 |
| chr3_2 | CDS | 9944976 | 9945020 | 9944976 | ID=Msa0394760-mRNA-1:cds;Parent=Msa0394760-mRNA-1 |
| chr3_2 | CDS | 9945108 | 9945196 | 9945108 | ID=Msa0394760-mRNA-1:cds;Parent=Msa0394760-mRNA-1 |
| chr3_2 | CDS | 9945716 | 9945759 | 9945716 | ID=Msa0394760-mRNA-1:cds;Parent=Msa0394760-mRNA-1 |
| chr3_2 | CDS | 9946383 | 9946492 | 9946383 | ID=Msa0394760-mRNA-1:cds;Parent=Msa0394760-mRNA-1 |
| chr3_2 | three_prime_UTR | 9946493 | 9946599 | 9946493 | ID=Msa0394760-mRNA-1:three_prime_utr;Parent=Msa0394760-mRNA-1 |
| chr3_2 | three_prime_UTR | 9946623 | 9946800 | 9946623 | ID=Msa0394760-mRNA-1:three_prime_utr;Parent=Msa0394760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
