AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0139500


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0139500 MtrunA17_Chr1g0213031 94.196 224 12 1 1 224 1 223 2.28e-153 424
Msa0139500 MtrunA17_Chr1g0213021 89.189 222 24 0 5 226 4 225 5.24e-146 406
Msa0139500 MtrunA17_Chr1g0213011 61.538 221 85 0 6 226 2 222 3.86e-96 280
Msa0139500 MtrunA17_Chr1g0213051 51.852 216 102 1 5 218 2 217 3.32e-72 219
Msa0139500 MtrunA17_Chr1g0213041 49.528 212 105 1 9 218 6 217 7.90e-69 210
Msa0139500 MtrunA17_Chr7g0224381 45.238 168 92 0 5 172 2 169 1.12e-49 160
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0139500 AT3G55120.1 49.761 209 105 0 9 217 16 224 3.78e-67 207
Msa0139500 AT5G66230.2 45.205 219 111 2 9 226 6 216 1.61e-52 177
Msa0139500 AT5G66220.1 45.783 166 89 1 62 226 2 167 5.53e-43 143

Find 92 sgRNAs with CRISPR-Local

Find 338 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAACTTAGAGAAGCCTTTA+AGG 0.168675 1_3:-73177403 Msa0139500:CDS
TTCAGGTATTGTCTCATCTT+TGG 0.255423 1_3:+73177216 None:intergenic
GGTGGAGTTCATTGAATTTC+CGG 0.261011 1_3:-73181654 Msa0139500:CDS
GTCACATGGGTCACATTAAA+AGG 0.301974 1_3:-73181874 None:intergenic
CAAACACCAAATGGAACATT+AGG 0.304549 1_3:-73177342 Msa0139500:CDS
ATGTTCCTTCAGATTTCATA+TGG 0.333432 1_3:+73177454 None:intergenic
TCCTATTTCCTTGGTGGTGC+AGG 0.335100 1_3:-73181602 Msa0139500:intron
GCCTGCTTTGAAAGAGAGTT+TGG 0.339202 1_3:-73177116 Msa0139500:CDS
TCTTTCAAAGCAGGCGAAAC+AGG 0.349240 1_3:+73177124 None:intergenic
TGATTAATGTGAAGAATCAT+AGG 0.350247 1_3:-73176291 Msa0139500:three_prime_UTR
TTAGTTAAGGTAGTTAGAAT+TGG 0.358462 1_3:+73176076 None:intergenic
ACCTGCACCACCAAGGAAAT+AGG 0.361057 1_3:+73181601 None:intergenic
AAGATAGGTGGAGTTAGTTA+AGG 0.367708 1_3:+73176063 None:intergenic
ATCTATGATCTTTATCCCTC+TGG 0.369542 1_3:+73176267 None:intergenic
TTTGTGAAGTTCACTGTATT+AGG 0.371421 1_3:-73178074 Msa0139500:CDS
CACTGTATTAGGAGTTTACT+TGG 0.384450 1_3:-73178063 Msa0139500:CDS
ATAACAGCATACTCATGTTC+AGG 0.391503 1_3:+73177199 None:intergenic
TATAAACAACAAGCCGCTTT+CGG 0.408427 1_3:-73177179 Msa0139500:CDS
AAGATTGACAGCTTCAACAT+TGG 0.413869 1_3:-73177070 Msa0139500:CDS
AAACACCAAATGGAACATTA+GGG 0.415014 1_3:-73177341 Msa0139500:CDS
ATCATAGATGTAAGCAAGAT+AGG 0.415642 1_3:-73176253 Msa0139500:three_prime_UTR
CTAACCCCTAATGTTCCATT+TGG 0.420625 1_3:+73177336 None:intergenic
TTCTTCAGACAAACACCAAA+TGG 0.421941 1_3:-73177351 Msa0139500:CDS
CACCTTCACTCCAGTGATCA+TGG 0.422784 1_3:+73181673 None:intergenic
GGCTTCTCTAAGTTCTTGAA+TGG 0.424062 1_3:+73177410 None:intergenic
GTGAGAGGGTTAGATATTGA+TGG 0.425916 1_3:-73178101 Msa0139500:CDS
TTTCAATCATGTATATTTAG+TGG 0.427638 1_3:+73181792 None:intergenic
AGGAGTTTACTTGGAAGAAA+AGG 0.434965 1_3:-73178054 Msa0139500:CDS
AGAGCCTCCCTCAAGCTAGT+AGG 0.441020 1_3:-73176029 Msa0139500:three_prime_UTR
ACCAAGTCCTATTTCCTTGG+TGG 0.442954 1_3:-73181608 Msa0139500:CDS
ATGAAATCTGAAGGAACATA+TGG 0.443450 1_3:-73177450 Msa0139500:CDS
GAGGGAGGCTCTTAAATAGT+TGG 0.445690 1_3:+73176040 None:intergenic
TCCACCAAGTCCTATTTCCT+TGG 0.465024 1_3:-73181611 Msa0139500:CDS
GCCGCTTTCGGAGGCAGTGT+TGG 0.468906 1_3:-73177167 Msa0139500:CDS
TTCAATCATGTATATTTAGT+GGG 0.473862 1_3:+73181793 None:intergenic
CTCTTAAATAGTTGGAAGAT+AGG 0.476645 1_3:+73176048 None:intergenic
AAATAGGACTTGGTGGATGA+TGG 0.479938 1_3:+73181617 None:intergenic
GTTCATTGAATTTCCGGCAG+TGG 0.480687 1_3:-73181648 Msa0139500:CDS
GATGGAGGTGTCACCACTGC+CGG 0.484240 1_3:+73181635 None:intergenic
AGGTAGTGAATATGTGAGAA+AGG 0.489997 1_3:-73177496 Msa0139500:CDS
TGATATCTCGGTAGAAATCA+AGG 0.490821 1_3:+73177973 None:intergenic
CTACATCCCTACTAGCTTGA+GGG 0.493459 1_3:+73176022 None:intergenic
TCTTCCCTCACAAAAGGGAC+AGG 0.497812 1_3:-73175918 Msa0139500:three_prime_UTR
CATCGAATAAATTTCTCAAA+GGG 0.503134 1_3:+73177540 None:intergenic
GAGCCTCCCTCAAGCTAGTA+GGG 0.507445 1_3:-73176028 Msa0139500:three_prime_UTR
GCCAAACTCTCTTTCAAAGC+AGG 0.514705 1_3:+73177115 None:intergenic
AACAGGAATTTCTCCGGTCA+TGG 0.514747 1_3:+73177141 None:intergenic
ACAAAGGTGAGAACACTAGA+AGG 0.516764 1_3:-73177516 Msa0139500:CDS
AGGGATTCAAAGAGCTGAGA+TGG 0.521295 1_3:+73177993 None:intergenic
TGTTCCTTCAGATTTCATAT+GGG 0.526558 1_3:+73177455 None:intergenic
TGCTACCTTTGATGATATCT+CGG 0.527385 1_3:+73177961 None:intergenic
TAGCATCACTTACTCCTAAG+TGG 0.528607 1_3:-73178028 Msa0139500:CDS
GCAGCAGCATCCATGATCAC+TGG 0.535344 1_3:-73181683 Msa0139500:CDS
ACCAAGGAAATAGGACTTGG+TGG 0.536120 1_3:+73181610 None:intergenic
ATCACTTACTCCTAAGTGGA+AGG 0.541188 1_3:-73178024 Msa0139500:CDS
ACATCGAATAAATTTCTCAA+AGG 0.541800 1_3:+73177539 None:intergenic
ATCCATGATCACTGGAGTGA+AGG 0.543867 1_3:-73181675 Msa0139500:CDS
ATGTGTATTCATGAGGTAGA+AGG 0.545822 1_3:-73176224 Msa0139500:three_prime_UTR
GGAGTCTTGCCCTTCCACTT+AGG 0.546270 1_3:+73178014 None:intergenic
CTGAAGAAAACACCAGCCCC+TGG 0.557559 1_3:+73177366 None:intergenic
TAATGGTATGTAGGGGTGAG+AGG 0.559143 1_3:-73178116 Msa0139500:intron
TTTCCTATGAATAAAAGCGT+TGG 0.559247 1_3:+73175883 None:intergenic
GTGAAGAATCATAGGGCCAG+AGG 0.559853 1_3:-73176283 Msa0139500:three_prime_UTR
CATGATCACTGGAGTGAAGG+TGG 0.559960 1_3:-73181672 Msa0139500:CDS
GCAGTGTTGGAGACCATGAC+CGG 0.572482 1_3:-73177154 Msa0139500:CDS
AGGCGAAACAGGAATTTCTC+CGG 0.576812 1_3:+73177135 None:intergenic
TAGATCAAATTGACGCAAAG+TGG 0.578900 1_3:-73181729 Msa0139500:five_prime_UTR
GAAATTTATTCGATGTACAA+AGG 0.580122 1_3:-73177532 Msa0139500:CDS
TCCAACACTGCCTCCGAAAG+CGG 0.582725 1_3:+73177166 None:intergenic
AATGGTATGTAGGGGTGAGA+GGG 0.586252 1_3:-73178115 Msa0139500:intron
TCTACATCCCTACTAGCTTG+AGG 0.586674 1_3:+73176021 None:intergenic
TTCTACCGAGATATCATCAA+AGG 0.592051 1_3:-73177966 Msa0139500:intron
TTAAATAGTTGGAAGATAGG+TGG 0.594862 1_3:+73176051 None:intergenic
AGATCAAATTGACGCAAAGT+GGG 0.597532 1_3:-73181728 Msa0139500:five_prime_UTR
AGTGGGATAGCTATAAGCTA+TGG 0.598962 1_3:-73181711 Msa0139500:exon
ACCACCAAGGAAATAGGACT+TGG 0.610116 1_3:+73181607 None:intergenic
GATTAATGTGAAGAATCATA+GGG 0.610919 1_3:-73176290 Msa0139500:three_prime_UTR
ATTGCCCATATGAAATCTGA+AGG 0.611017 1_3:-73177459 Msa0139500:CDS
AAACAACAAGCCGCTTTCGG+AGG 0.621155 1_3:-73177176 Msa0139500:CDS
TGAAGAATCATAGGGCCAGA+GGG 0.621477 1_3:-73176282 Msa0139500:three_prime_UTR
GAAACACATGTGTATTCATG+AGG 0.626205 1_3:-73176231 Msa0139500:three_prime_UTR
TAGGACTTGGTGGATGATGG+AGG 0.628115 1_3:+73181620 None:intergenic
GATATCTCGGTAGAAATCAA+GGG 0.631456 1_3:+73177974 None:intergenic
AAGAAAACACCAGCCCCTGG+TGG 0.637698 1_3:+73177369 None:intergenic
TCACTTACTCCTAAGTGGAA+GGG 0.638389 1_3:-73178023 Msa0139500:CDS
AAGAAATACCTGCACCACCA+AGG 0.648491 1_3:+73181594 None:intergenic
TCATAGGAAAATGCTAACCA+TGG 0.648669 1_3:-73175870 Msa0139500:three_prime_UTR
TAGTTAGTAACTCTAGCATG+AGG 0.660036 1_3:+73176125 None:intergenic
ATAGCTATAAGCTATGGCAA+AGG 0.662193 1_3:-73181705 Msa0139500:exon
TATGACTTATAGATTTCACA+TGG 0.667600 1_3:+73176984 None:intergenic
AACACCAAATGGAACATTAG+GGG 0.677472 1_3:-73177340 Msa0139500:intron
CATCCCTACTAGCTTGAGGG+AGG 0.681478 1_3:+73176025 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTATTATTATTTTTT+GGG + chr1_3:73178794-73178813 None:intergenic 0.0%
!!! TTTTTATTATTATTATTTTT+TGG + chr1_3:73178795-73178814 None:intergenic 0.0%
!! TCTAATAATTAATATATAAC+AGG - chr1_3:73176717-73176736 Msa0139500:intron 10.0%
!!! AAAAATAAATCTTTTTTATG+AGG + chr1_3:73176899-73176918 None:intergenic 10.0%
!!! AAAAAAAAAAAAAGTCTTTT+TGG + chr1_3:73177488-73177507 None:intergenic 10.0%
!! ATCAAAACTTTATAAAAAAA+AGG - chr1_3:73178130-73178149 Msa0139500:intron 10.0%
!! TCAAAACTTTATAAAAAAAA+GGG - chr1_3:73178131-73178150 Msa0139500:intron 10.0%
!! AATTACAGATATAAAAAATA+AGG - chr1_3:73178588-73178607 Msa0139500:intron 10.0%
!! ATTACAGATATAAAAAATAA+GGG - chr1_3:73178589-73178608 Msa0139500:intron 10.0%
!!! TTTTATTGATCATTCTTTTT+AGG + chr1_3:73176646-73176665 None:intergenic 15.0%
!! TTATACATTAACAATCTAAT+AGG - chr1_3:73177008-73177027 Msa0139500:three_prime_UTR 15.0%
!! TATCAAAATATAATGTAATG+TGG + chr1_3:73177038-73177057 None:intergenic 15.0%
!!! AAACATTTTCTTCTTTTTTA+TGG + chr1_3:73177189-73177208 None:intergenic 15.0%
!! TCAAATATAAATATAAGTAG+CGG + chr1_3:73177652-73177671 None:intergenic 15.0%
!!! AGAACCTTTTTTTTTTTTTT+AGG - chr1_3:73177713-73177732 Msa0139500:intron 15.0%
!! CTTACCTAAAAAAAAAAAAA+AGG + chr1_3:73177720-73177739 None:intergenic 15.0%
!! CATCTTACATTATTATATAA+AGG + chr1_3:73177774-73177793 None:intergenic 15.0%
!!! ACAATAGTTTTTATTGATAT+GGG + chr1_3:73178031-73178050 None:intergenic 15.0%
!!! AACAATAGTTTTTATTGATA+TGG + chr1_3:73178032-73178051 None:intergenic 15.0%
!!! AAAAGAATATTTCTATTTCT+GGG + chr1_3:73178653-73178672 None:intergenic 15.0%
!!! TAAAAGAATATTTCTATTTC+TGG + chr1_3:73178654-73178673 None:intergenic 15.0%
!! TATGTCTAATTAAAAAATTG+AGG - chr1_3:73179010-73179029 Msa0139500:intron 15.0%
!! ATGTCTAATTAAAAAATTGA+GGG - chr1_3:73179011-73179030 Msa0139500:intron 15.0%
!!! TGATATTTTAATAAACCTTA+AGG - chr1_3:73179042-73179061 Msa0139500:intron 15.0%
!!! GATATTTTAATAAACCTTAA+GGG - chr1_3:73179043-73179062 Msa0139500:intron 15.0%
!!! AATTTTGATGGTTTTTTTTA+GGG + chr1_3:73179085-73179104 None:intergenic 15.0%
!! AATGTATACTCATTTATATA+TGG - chr1_3:73180099-73180118 Msa0139500:intron 15.0%
!! ATGTATACTCATTTATATAT+GGG - chr1_3:73180100-73180119 Msa0139500:intron 15.0%
!!! TTAAAATGTGTTGATTAAAT+TGG + chr1_3:73180400-73180419 None:intergenic 15.0%
!! TTCAATCATGTATATTTAGT+GGG + chr1_3:73175884-73175903 None:intergenic 20.0%
!! TTTCAATCATGTATATTTAG+TGG + chr1_3:73175885-73175904 None:intergenic 20.0%
!!! TTTTCAAGTGTTTATATAGA+AGG + chr1_3:73175916-73175935 None:intergenic 20.0%
!! AATCTTTAACAAATGTCATA+TGG - chr1_3:73176598-73176617 Msa0139500:intron 20.0%
!! ATCTTTAACAAATGTCATAT+GGG - chr1_3:73176599-73176618 Msa0139500:intron 20.0%
!! AAATCTTACTTTCATAAGTT+TGG + chr1_3:73176748-73176767 None:intergenic 20.0%
!! ATTATAGATAATTACAACGA+GGG - chr1_3:73176826-73176845 Msa0139500:intron 20.0%
!!! ATAAATCTTTTTTATGAGGT+CGG + chr1_3:73176895-73176914 None:intergenic 20.0%
!! AAACATACTTAAAGTAAGTT+TGG - chr1_3:73177458-73177477 Msa0139500:CDS 20.0%
!!! ATGGATATTTTAAAAAGTCA+CGG - chr1_3:73177537-73177556 Msa0139500:CDS 20.0%
!! ACTCTATTGATATTAATATG+AGG + chr1_3:73177828-73177847 None:intergenic 20.0%
!!! ACTGTTTTTTTAAAACTAGA+GGG + chr1_3:73178205-73178224 None:intergenic 20.0%
!! TTTACCTTAAATTCCTTTAA+CGG - chr1_3:73178335-73178354 Msa0139500:intron 20.0%
!! ATAGATATACAATCAAAAAC+TGG + chr1_3:73178561-73178580 None:intergenic 20.0%
!! TGTCTAATTAAAAAATTGAG+GGG - chr1_3:73179012-73179031 Msa0139500:intron 20.0%
!!! CAATTTTGATGGTTTTTTTT+AGG + chr1_3:73179086-73179105 None:intergenic 20.0%
!! ATAACCATGATTTATCTAAA+AGG - chr1_3:73179258-73179277 Msa0139500:intron 20.0%
!!! TTTTCCATGATTTTCATTTT+CGG + chr1_3:73179415-73179434 None:intergenic 20.0%
!! TGAAAATCATGGAAAAATAT+TGG - chr1_3:73179419-73179438 Msa0139500:intron 20.0%
!! GAAAATCATGGAAAAATATT+GGG - chr1_3:73179420-73179439 Msa0139500:intron 20.0%
!!! GATGTTTTTTTTATTGCTAA+TGG - chr1_3:73179541-73179560 Msa0139500:intron 20.0%
!! GATATTTAGATACATGAAAT+AGG + chr1_3:73180378-73180397 None:intergenic 20.0%
!! TAAGAAAAAAGTTATCAAAG+AGG - chr1_3:73180886-73180905 Msa0139500:intron 20.0%
!! TTTAAAAGTTGACATTTGAA+CGG - chr1_3:73180931-73180950 Msa0139500:intron 20.0%
!! TATATGGAAATGAAAAAGTA+AGG + chr1_3:73181204-73181223 None:intergenic 20.0%
!!! TACTTTTTCATTTCCATATA+TGG - chr1_3:73181204-73181223 Msa0139500:intron 20.0%
!!! TACATAGTTGTTGATATTTT+TGG - chr1_3:73181253-73181272 Msa0139500:intron 20.0%
!!! ACATAGTTGTTGATATTTTT+GGG - chr1_3:73181254-73181273 Msa0139500:intron 20.0%
!! AATGTATAGATTGATAAAAG+AGG - chr1_3:73181493-73181512 Msa0139500:intron 20.0%
! TCTTTAACAAATGTCATATG+GGG - chr1_3:73176600-73176619 Msa0139500:intron 25.0%
! AAGTTCATCTATTAGTTAGA+GGG + chr1_3:73176692-73176711 None:intergenic 25.0%
! AAAGTTCATCTATTAGTTAG+AGG + chr1_3:73176693-73176712 None:intergenic 25.0%
! GATTATAGATAATTACAACG+AGG - chr1_3:73176825-73176844 Msa0139500:intron 25.0%
! TTAAGTATGTTTGATCTCAT+CGG + chr1_3:73177450-73177469 None:intergenic 25.0%
! CAATCCAATGCAAAATTTAA+CGG - chr1_3:73177948-73177967 Msa0139500:intron 25.0%
! TATTTACAGTCACATACAAT+AGG + chr1_3:73178072-73178091 None:intergenic 25.0%
! GTTGTTTAATAAAACCTCAA+GGG + chr1_3:73178173-73178192 None:intergenic 25.0%
!! TGTTGTTTAATAAAACCTCA+AGG + chr1_3:73178174-73178193 None:intergenic 25.0%
!!! TGTTTTTTTAAAACTAGAGG+GGG + chr1_3:73178203-73178222 None:intergenic 25.0%
!!! CTGTTTTTTTAAAACTAGAG+GGG + chr1_3:73178204-73178223 None:intergenic 25.0%
!!! GACTGTTTTTTTAAAACTAG+AGG + chr1_3:73178206-73178225 None:intergenic 25.0%
! TTACCTTAAATTCCTTTAAC+GGG - chr1_3:73178336-73178355 Msa0139500:intron 25.0%
! TTGAAATGAAAGTTACGTAA+TGG + chr1_3:73178365-73178384 None:intergenic 25.0%
!! CAAATGTAGAAAGTTTTTGT+TGG + chr1_3:73178732-73178751 None:intergenic 25.0%
! AAAAAAAAGAGGACATAACA+AGG - chr1_3:73178810-73178829 Msa0139500:intron 25.0%
! AATTTCAAGGGAAATATAGT+GGG - chr1_3:73178833-73178852 Msa0139500:intron 25.0%
!!! TTCTTCCTCAATTTTTGAAA+CGG + chr1_3:73178897-73178916 None:intergenic 25.0%
! GTCTAATTAAAAAATTGAGG+GGG - chr1_3:73179013-73179032 Msa0139500:intron 25.0%
!!! ATTTTAATAAACCTTAAGGG+AGG - chr1_3:73179046-73179065 Msa0139500:intron 25.0%
!! TCAACCTTTTAGATAAATCA+TGG + chr1_3:73179265-73179284 None:intergenic 25.0%
!! TTTTATTGCTAATGGTATGT+AGG - chr1_3:73179549-73179568 Msa0139500:intron 25.0%
! TTTATTGCTAATGGTATGTA+GGG - chr1_3:73179550-73179569 Msa0139500:intron 25.0%
! TTCCATAACATTATTGATGT+AGG - chr1_3:73179798-73179817 Msa0139500:intron 25.0%
! TTCCTACATCAATAATGTTA+TGG + chr1_3:73179803-73179822 None:intergenic 25.0%
! TTTATTGTCGACAAAAACTA+CGG - chr1_3:73179958-73179977 Msa0139500:intron 25.0%
! ACATGCTAACTATAATTCAT+TGG + chr1_3:73180000-73180019 None:intergenic 25.0%
! ATTTATATATGGGTGTGTTT+AGG - chr1_3:73180110-73180129 Msa0139500:intron 25.0%
! CATCGAATAAATTTCTCAAA+GGG + chr1_3:73180137-73180156 None:intergenic 25.0%
! ACATCGAATAAATTTCTCAA+AGG + chr1_3:73180138-73180157 None:intergenic 25.0%
! GAAATTTATTCGATGTACAA+AGG - chr1_3:73180142-73180161 Msa0139500:intron 25.0%
! TGGAAAAAATTGAACCTTAA+AGG + chr1_3:73180288-73180307 None:intergenic 25.0%
! TATGACTTATAGATTTCACA+TGG + chr1_3:73180693-73180712 None:intergenic 25.0%
!!! TTCCATATATGGTTATTTTC+AGG - chr1_3:73181215-73181234 Msa0139500:intron 25.0%
!!! TCCATATATGGTTATTTTCA+GGG - chr1_3:73181216-73181235 Msa0139500:intron 25.0%
!! CACATTAATCAGTGTTTTAT+AGG + chr1_3:73181374-73181393 None:intergenic 25.0%
! TGATTAATGTGAAGAATCAT+AGG - chr1_3:73181383-73181402 Msa0139500:intron 25.0%
! GATTAATGTGAAGAATCATA+GGG - chr1_3:73181384-73181403 Msa0139500:intron 25.0%
! TTAGTTAAGGTAGTTAGAAT+TGG + chr1_3:73181601-73181620 None:intergenic 25.0%
!! GATGTAGATATAGTTTTCAA+GGG - chr1_3:73181668-73181687 Msa0139500:CDS 25.0%
!!! TAATGACTTTTTTAAGACCA+TGG + chr1_3:73181824-73181843 None:intergenic 25.0%
!! ATGGTCTTAAAAAAGTCATT+AGG - chr1_3:73181823-73181842 Msa0139500:five_prime_UTR 25.0%
! TAAACACTTGAAAAAAGCAC+TGG - chr1_3:73175922-73175941 Msa0139500:three_prime_UTR 30.0%
! CTTATAATGTTTTCACTGCT+AGG - chr1_3:73176135-73176154 Msa0139500:three_prime_UTR 30.0%
CTGAACAATTCATAGTTCTT+TGG - chr1_3:73176422-73176441 Msa0139500:intron 30.0%
!! TGAATACACAGTTCTAAAGA+TGG + chr1_3:73176515-73176534 None:intergenic 30.0%
AACTCATATGGTGTTTAATC+TGG - chr1_3:73176790-73176809 Msa0139500:intron 30.0%
TTTAATCTGGTAAGTATGGT+GGG - chr1_3:73176803-73176822 Msa0139500:intron 30.0%
GTTTCGTGAGGAAATAATTT+GGG + chr1_3:73177337-73177356 None:intergenic 30.0%
TGTTTCGTGAGGAAATAATT+TGG + chr1_3:73177338-73177357 None:intergenic 30.0%
AAACTTACCTATCACTATCA+TGG - chr1_3:73177369-73177388 Msa0139500:CDS 30.0%
!!! GCATGACTTTTTTAGTTGAA+TGG - chr1_3:73177518-73177537 Msa0139500:CDS 30.0%
TAATATGAGGAAGATTTGTG+CGG + chr1_3:73177815-73177834 None:intergenic 30.0%
TCGTGAATGTTTCATGAATA+TGG - chr1_3:73177982-73178001 Msa0139500:CDS 30.0%
AGGTAAAAATGCAAAAGCTA+CGG + chr1_3:73178322-73178341 None:intergenic 30.0%
AAACCCGTTAAAGGAATTTA+AGG + chr1_3:73178342-73178361 None:intergenic 30.0%
GACATAACAAGGAATTTCAA+GGG - chr1_3:73178821-73178840 Msa0139500:intron 30.0%
GAATTTCAAGGGAAATATAG+TGG - chr1_3:73178832-73178851 Msa0139500:intron 30.0%
! TCTTTCTTTTCTTTCTTCCA+CGG + chr1_3:73178864-73178883 None:intergenic 30.0%
ACAAGTGATTGAGTAGTATT+AGG + chr1_3:73179199-73179218 None:intergenic 30.0%
ATAAATCATGGTTATCTCGA+GGG + chr1_3:73179253-73179272 None:intergenic 30.0%
AACCCCTAAATCAAATATTG+AGG - chr1_3:73179329-73179348 Msa0139500:intron 30.0%
ACCCCTAAATCAAATATTGA+GGG - chr1_3:73179330-73179349 Msa0139500:intron 30.0%
! TCCCTCAATATTTGATTTAG+GGG + chr1_3:73179334-73179353 None:intergenic 30.0%
! GTCCCTCAATATTTGATTTA+GGG + chr1_3:73179335-73179354 None:intergenic 30.0%
! AGTCCCTCAATATTTGATTT+AGG + chr1_3:73179336-73179355 None:intergenic 30.0%
!!! TGATTGAAGCATTGCTTTTA+TGG - chr1_3:73179490-73179509 Msa0139500:intron 30.0%
TTATTGCTAATGGTATGTAG+GGG - chr1_3:73179551-73179570 Msa0139500:intron 30.0%
TTTGTGAAGTTCACTGTATT+AGG - chr1_3:73179600-73179619 Msa0139500:intron 30.0%
ACAACTGCAAATGCAATTTA+AGG - chr1_3:73180040-73180059 Msa0139500:intron 30.0%
TGTTCCTTCAGATTTCATAT+GGG + chr1_3:73180222-73180241 None:intergenic 30.0%
ATGTTCCTTCAGATTTCATA+TGG + chr1_3:73180223-73180242 None:intergenic 30.0%
ATGAAATCTGAAGGAACATA+TGG - chr1_3:73180224-73180243 Msa0139500:intron 30.0%
AAACACCAAATGGAACATTA+GGG - chr1_3:73180333-73180352 Msa0139500:intron 30.0%
AAACACATGAAAAAACAACC+AGG + chr1_3:73180781-73180800 None:intergenic 30.0%
AGAATGTGTATGTCACATAA+GGG + chr1_3:73181174-73181193 None:intergenic 30.0%
TAGAATGTGTATGTCACATA+AGG + chr1_3:73181175-73181194 None:intergenic 30.0%
ACCCTGAAAATAACCATATA+TGG + chr1_3:73181220-73181239 None:intergenic 30.0%
!!! TGGTTATTTTTGGATATGTG+GGG + chr1_3:73181316-73181335 None:intergenic 30.0%
!!! GTGGTTATTTTTGGATATGT+GGG + chr1_3:73181317-73181336 None:intergenic 30.0%
!!! TGTGGTTATTTTTGGATATG+TGG + chr1_3:73181318-73181337 None:intergenic 30.0%
!! ATACTACGTGTGGTTATTTT+TGG + chr1_3:73181326-73181345 None:intergenic 30.0%
CTTATCATATATACTACGTG+TGG + chr1_3:73181336-73181355 None:intergenic 30.0%
ATCATAGATGTAAGCAAGAT+AGG - chr1_3:73181421-73181440 Msa0139500:intron 30.0%
AGGAGTAATGTTTACAAAGA+TGG - chr1_3:73181513-73181532 Msa0139500:intron 30.0%
TTAAATAGTTGGAAGATAGG+TGG + chr1_3:73181626-73181645 None:intergenic 30.0%
CTCTTAAATAGTTGGAAGAT+AGG + chr1_3:73181629-73181648 None:intergenic 30.0%
! GGATGTAGATATAGTTTTCA+AGG - chr1_3:73181667-73181686 Msa0139500:CDS 30.0%
! TTACCAACGCTTTTATTCAT+AGG - chr1_3:73181788-73181807 Msa0139500:five_prime_UTR 30.0%
! TTTCCTATGAATAAAAGCGT+TGG + chr1_3:73181794-73181813 None:intergenic 30.0%
TAGATCAAATTGACGCAAAG+TGG - chr1_3:73175945-73175964 Msa0139500:three_prime_UTR 35.0%
AGATCAAATTGACGCAAAGT+GGG - chr1_3:73175946-73175965 Msa0139500:three_prime_UTR 35.0%
ATAGCTATAAGCTATGGCAA+AGG - chr1_3:73175969-73175988 Msa0139500:three_prime_UTR 35.0%
! CTTCAGTATCGAATTTAGTG+AGG - chr1_3:73176222-73176241 Msa0139500:three_prime_UTR 35.0%
! TGAGGTACCAAAATCCTTAA+CGG - chr1_3:73176240-73176259 Msa0139500:three_prime_UTR 35.0%
! CAAAATCCTTAACGGCTTTT+CGG - chr1_3:73176248-73176267 Msa0139500:three_prime_UTR 35.0%
TTTCGGCCTTACAAAATGTT+AGG - chr1_3:73176265-73176284 Msa0139500:three_prime_UTR 35.0%
TTCGGCCTTACAAAATGTTA+GGG - chr1_3:73176266-73176285 Msa0139500:three_prime_UTR 35.0%
GAAATAGTGTTCCATCACAA+CGG - chr1_3:73176292-73176311 Msa0139500:three_prime_UTR 35.0%
AAATAGTGTTCCATCACAAC+GGG - chr1_3:73176293-73176312 Msa0139500:three_prime_UTR 35.0%
TATTCTATATCCCGTTGTGA+TGG + chr1_3:73176306-73176325 None:intergenic 35.0%
! CTTCCTTTGAAGAACTCATA+TGG - chr1_3:73176778-73176797 Msa0139500:intron 35.0%
ACACCATATGAGTTCTTCAA+AGG + chr1_3:73176784-73176803 None:intergenic 35.0%
GGTGTTTAATCTGGTAAGTA+TGG - chr1_3:73176799-73176818 Msa0139500:intron 35.0%
GTTTAATCTGGTAAGTATGG+TGG - chr1_3:73176802-73176821 Msa0139500:intron 35.0%
TGAAGACGTAAGCATGAAAT+AGG + chr1_3:73176971-73176990 None:intergenic 35.0%
TTATTTCCTCACGAAACATC+AGG - chr1_3:73177340-73177359 Msa0139500:intron 35.0%
AGTAGCGGTGAAAATAAGTT+CGG + chr1_3:73177637-73177656 None:intergenic 35.0%
! ACACACAAGTGTATTTGTTG+CGG - chr1_3:73177892-73177911 Msa0139500:intron 35.0%
TGAGCGGATCATGATAAAAA+GGG + chr1_3:73177922-73177941 None:intergenic 35.0%
ATGAGCGGATCATGATAAAA+AGG + chr1_3:73177923-73177942 None:intergenic 35.0%
CATTGGATTGAATACATGAG+CGG + chr1_3:73177938-73177957 None:intergenic 35.0%
! GAAGCCGTTAAATTTTGCAT+TGG + chr1_3:73177955-73177974 None:intergenic 35.0%
AATTATATTGACCTCCCTTG+AGG - chr1_3:73178156-73178175 Msa0139500:intron 35.0%
GTTTAATAAAACCTCAAGGG+AGG + chr1_3:73178170-73178189 None:intergenic 35.0%
CTAACACCGTTAACTTTGAA+GGG + chr1_3:73178233-73178252 None:intergenic 35.0%
ACTAACACCGTTAACTTTGA+AGG + chr1_3:73178234-73178253 None:intergenic 35.0%
TCATGTGCTAAGAAGTTAAG+AGG + chr1_3:73178299-73178318 None:intergenic 35.0%
TCATGTTATCTTATGCCCTA+AGG - chr1_3:73178612-73178631 Msa0139500:intron 35.0%
CATGTTATCTTATGCCCTAA+GGG - chr1_3:73178613-73178632 Msa0139500:intron 35.0%
!! ACACATTAACTTGTGCCTTA+AGG - chr1_3:73178752-73178771 Msa0139500:intron 35.0%
!! CACATTAACTTGTGCCTTAA+GGG - chr1_3:73178753-73178772 Msa0139500:intron 35.0%
!! AATGTTAACTTGTGCCCTTA+AGG + chr1_3:73178770-73178789 None:intergenic 35.0%
GGACATAACAAGGAATTTCA+AGG - chr1_3:73178820-73178839 Msa0139500:intron 35.0%
TGCAAACAATGTAAACCAAG+AGG - chr1_3:73178948-73178967 Msa0139500:intron 35.0%
GCAAACAATGTAAACCAAGA+GGG - chr1_3:73178949-73178968 Msa0139500:intron 35.0%
CAAACAATGTAAACCAAGAG+GGG - chr1_3:73178950-73178969 Msa0139500:intron 35.0%
TATCACATTGAGGATTGAGT+AGG - chr1_3:73178980-73178999 Msa0139500:intron 35.0%
ATCACATTGAGGATTGAGTA+GGG - chr1_3:73178981-73179000 Msa0139500:intron 35.0%
!! TGTGGCTCTATCAATTTTGA+TGG + chr1_3:73179097-73179116 None:intergenic 35.0%
AGGGATCAATAAGTCATTAG+AGG + chr1_3:73179234-73179253 None:intergenic 35.0%
GATAAATCATGGTTATCTCG+AGG + chr1_3:73179254-73179273 None:intergenic 35.0%
ACTGCCGAAAATGAAAATCA+TGG - chr1_3:73179408-73179427 Msa0139500:intron 35.0%
CACTGTATTAGGAGTTTACT+TGG - chr1_3:73179611-73179630 Msa0139500:intron 35.0%
AGGAGTTTACTTGGAAGAAA+AGG - chr1_3:73179620-73179639 Msa0139500:intron 35.0%
GATATCTCGGTAGAAATCAA+GGG + chr1_3:73179703-73179722 None:intergenic 35.0%
TGATATCTCGGTAGAAATCA+AGG + chr1_3:73179704-73179723 None:intergenic 35.0%
TTCTACCGAGATATCATCAA+AGG - chr1_3:73179708-73179727 Msa0139500:intron 35.0%
! TGCTACCTTTGATGATATCT+CGG + chr1_3:73179716-73179735 None:intergenic 35.0%
CTTGCACATATACTGTTGAA+TGG - chr1_3:73179927-73179946 Msa0139500:intron 35.0%
AGGTAGTGAATATGTGAGAA+AGG - chr1_3:73180178-73180197 Msa0139500:intron 35.0%
ATTGCCCATATGAAATCTGA+AGG - chr1_3:73180215-73180234 Msa0139500:intron 35.0%
AGAACTTAGAGAAGCCTTTA+AGG - chr1_3:73180271-73180290 Msa0139500:intron 35.0%
!!! AAGGTTCAATTTTTTCCACC+AGG - chr1_3:73180290-73180309 Msa0139500:intron 35.0%
!!! AGGTTCAATTTTTTCCACCA+GGG - chr1_3:73180291-73180310 Msa0139500:intron 35.0%
TTCTTCAGACAAACACCAAA+TGG - chr1_3:73180323-73180342 Msa0139500:intron 35.0%
CAAACACCAAATGGAACATT+AGG - chr1_3:73180332-73180351 Msa0139500:intron 35.0%
AACACCAAATGGAACATTAG+GGG - chr1_3:73180334-73180353 Msa0139500:intron 35.0%
! TTCAGGTATTGTCTCATCTT+TGG + chr1_3:73180461-73180480 None:intergenic 35.0%
ATAACAGCATACTCATGTTC+AGG + chr1_3:73180478-73180497 None:intergenic 35.0%
! TATAAACAACAAGCCGCTTT+CGG - chr1_3:73180495-73180514 Msa0139500:intron 35.0%
AAGATTGACAGCTTCAACAT+TGG - chr1_3:73180604-73180623 Msa0139500:intron 35.0%
!! TTATTTTTCCCAGCACTTTG+TGG - chr1_3:73180741-73180760 Msa0139500:intron 35.0%
!!! TTGATATTTTTGGGCCAGAA+AGG - chr1_3:73181263-73181282 Msa0139500:intron 35.0%
ATCTATGATCTTTATCCCTC+TGG + chr1_3:73181410-73181429 None:intergenic 35.0%
GAAACACATGTGTATTCATG+AGG - chr1_3:73181443-73181462 Msa0139500:intron 35.0%
ATGTGTATTCATGAGGTAGA+AGG - chr1_3:73181450-73181469 Msa0139500:intron 35.0%
TAGTTAGTAACTCTAGCATG+AGG + chr1_3:73181552-73181571 None:intergenic 35.0%
AAGATAGGTGGAGTTAGTTA+AGG + chr1_3:73181614-73181633 None:intergenic 35.0%
! TGTTTTTCTTCCCTCACAAA+AGG - chr1_3:73181750-73181769 Msa0139500:five_prime_UTR 35.0%
! GTTTTTCTTCCCTCACAAAA+GGG - chr1_3:73181751-73181770 Msa0139500:five_prime_UTR 35.0%
TCATAGGAAAATGCTAACCA+TGG - chr1_3:73181804-73181823 Msa0139500:five_prime_UTR 35.0%
AGTGGGATAGCTATAAGCTA+TGG - chr1_3:73175963-73175982 Msa0139500:three_prime_UTR 40.0%
GGTGGAGTTCATTGAATTTC+CGG - chr1_3:73176020-73176039 Msa0139500:three_prime_UTR 40.0%
!! AAATAGGACTTGGTGGATGA+TGG + chr1_3:73176060-73176079 None:intergenic 40.0%
TGACAGAATTTATGTGCGTC+GGG + chr1_3:73176193-73176212 None:intergenic 40.0%
GTGACAGAATTTATGTGCGT+CGG + chr1_3:73176194-73176213 None:intergenic 40.0%
! CGAAAAGCCGTTAAGGATTT+TGG + chr1_3:73176250-73176269 None:intergenic 40.0%
GCCTTACAAAATGTTAGGGA+GGG - chr1_3:73176270-73176289 Msa0139500:three_prime_UTR 40.0%
! TCCCTCCCTAACATTTTGTA+AGG + chr1_3:73176274-73176293 None:intergenic 40.0%
! AGAGGGAGTCAGTGAATTTT+AGG + chr1_3:73176675-73176694 None:intergenic 40.0%
! CACACAAGTGTATTTGTTGC+GGG - chr1_3:73177893-73177912 Msa0139500:intron 40.0%
GAGCGGATCATGATAAAAAG+GGG + chr1_3:73177921-73177940 None:intergenic 40.0%
TCACCTCCCTTCAAAGTTAA+CGG - chr1_3:73178224-73178243 Msa0139500:intron 40.0%
! ACGTAATGGAAACCCGTTAA+AGG + chr1_3:73178351-73178370 None:intergenic 40.0%
AGAGGGGAAATGAATTCGTT+TGG + chr1_3:73178480-73178499 None:intergenic 40.0%
GCAAAACTATGGTACTAGAG+GGG + chr1_3:73178496-73178515 None:intergenic 40.0%
GGCAAAACTATGGTACTAGA+GGG + chr1_3:73178497-73178516 None:intergenic 40.0%
TGGCAAAACTATGGTACTAG+AGG + chr1_3:73178498-73178517 None:intergenic 40.0%
!! CAAAGTGTTGTCACTACAGA+AGG + chr1_3:73178528-73178547 None:intergenic 40.0%
CTTCTGTAGTGACAACACTT+TGG - chr1_3:73178526-73178545 Msa0139500:intron 40.0%
TTGCTTAACATGTGCCCTTA+GGG + chr1_3:73178630-73178649 None:intergenic 40.0%
! TTCAAGGGAAATATAGTGGG+TGG - chr1_3:73178836-73178855 Msa0139500:intron 40.0%
! TGCTGCCGTTTCAAAAATTG+AGG - chr1_3:73178889-73178908 Msa0139500:intron 40.0%
TCACATTGAGGATTGAGTAG+GGG - chr1_3:73178982-73179001 Msa0139500:intron 40.0%
! AATTGCATTGACCTCCCTTA+AGG + chr1_3:73179060-73179079 None:intergenic 40.0%
GTGAGAGGGTTAGATATTGA+TGG - chr1_3:73179573-73179592 Msa0139500:intron 40.0%
TAGCATCACTTACTCCTAAG+TGG - chr1_3:73179646-73179665 Msa0139500:intron 40.0%
ATCACTTACTCCTAAGTGGA+AGG - chr1_3:73179650-73179669 Msa0139500:intron 40.0%
TCACTTACTCCTAAGTGGAA+GGG - chr1_3:73179651-73179670 Msa0139500:intron 40.0%
ACAAAGGTGAGAACACTAGA+AGG - chr1_3:73180158-73180177 Msa0139500:intron 40.0%
GGCTTCTCTAAGTTCTTGAA+TGG + chr1_3:73180267-73180286 None:intergenic 40.0%
!!! GGTTCAATTTTTTCCACCAG+GGG - chr1_3:73180292-73180311 Msa0139500:intron 40.0%
CTAACCCCTAATGTTCCATT+TGG + chr1_3:73180341-73180360 None:intergenic 40.0%
! AGCAGCTGCTATGATTTTGA+AGG - chr1_3:73180642-73180661 Msa0139500:intron 40.0%
GGCAAATAGTGCATTGTGAT+TGG + chr1_3:73181031-73181050 None:intergenic 40.0%
GCACTATTTGCCACAATTCA+AGG - chr1_3:73181039-73181058 Msa0139500:intron 40.0%
CTATTTGCCACAATTCAAGG+AGG - chr1_3:73181042-73181061 Msa0139500:intron 40.0%
TTTGGGCCAGAAAGGAATAA+AGG - chr1_3:73181271-73181290 Msa0139500:intron 40.0%
!! ATTTTTGGATATGTGGGGTG+AGG + chr1_3:73181311-73181330 None:intergenic 40.0%
ATCCATGATCACTGGAGTGA+AGG - chr1_3:73175999-73176018 Msa0139500:three_prime_UTR 45.0%
GTTCATTGAATTTCCGGCAG+TGG - chr1_3:73176026-73176045 Msa0139500:three_prime_UTR 45.0%
TCCACCAAGTCCTATTTCCT+TGG - chr1_3:73176063-73176082 Msa0139500:three_prime_UTR 45.0%
ACCAAGGAAATAGGACTTGG+TGG + chr1_3:73176067-73176086 None:intergenic 45.0%
ACCAAGTCCTATTTCCTTGG+TGG - chr1_3:73176066-73176085 Msa0139500:three_prime_UTR 45.0%
ACCACCAAGGAAATAGGACT+TGG + chr1_3:73176070-73176089 None:intergenic 45.0%
AAGAAATACCTGCACCACCA+AGG + chr1_3:73176083-73176102 None:intergenic 45.0%
GACAGAATTTATGTGCGTCG+GGG + chr1_3:73176192-73176211 None:intergenic 45.0%
GGCCTTACAAAATGTTAGGG+AGG - chr1_3:73176269-73176288 Msa0139500:three_prime_UTR 45.0%
! CCACACACCATGATAGTGAT+AGG + chr1_3:73177379-73177398 None:intergenic 45.0%
CCTATCACTATCATGGTGTG+TGG - chr1_3:73177376-73177395 Msa0139500:CDS 45.0%
!!! TTGTGCGGTGCTACAGTTTT+GGG + chr1_3:73177800-73177819 None:intergenic 45.0%
!!! TTTGTGCGGTGCTACAGTTT+TGG + chr1_3:73177801-73177820 None:intergenic 45.0%
! ACACCGTTAACTTTGAAGGG+AGG + chr1_3:73178230-73178249 None:intergenic 45.0%
GGTGCATGATGGCAAAACTA+TGG + chr1_3:73178507-73178526 None:intergenic 45.0%
! TCACTACAGAAGGTGCATGA+TGG + chr1_3:73178518-73178537 None:intergenic 45.0%
GTTGCTTAACATGTGCCCTT+AGG + chr1_3:73178631-73178650 None:intergenic 45.0%
!! AAATATAGTGGGTGGAACCG+TGG - chr1_3:73178844-73178863 Msa0139500:intron 45.0%
ACAATGTAAACCAAGAGGGG+AGG - chr1_3:73178953-73178972 Msa0139500:intron 45.0%
!! GGGAGGTGTTTATCACATTG+AGG - chr1_3:73178970-73178989 Msa0139500:intron 45.0%
CCACTGCATATGCACTTATG+TGG + chr1_3:73179115-73179134 None:intergenic 45.0%
CCACATAAGTGCATATGCAG+TGG - chr1_3:73179112-73179131 Msa0139500:intron 45.0%
TAATGGTATGTAGGGGTGAG+AGG - chr1_3:73179558-73179577 Msa0139500:intron 45.0%
AATGGTATGTAGGGGTGAGA+GGG - chr1_3:73179559-73179578 Msa0139500:intron 45.0%
AGGGATTCAAAGAGCTGAGA+TGG + chr1_3:73179684-73179703 None:intergenic 45.0%
AACAGGAATTTCTCCGGTCA+TGG + chr1_3:73180536-73180555 None:intergenic 45.0%
AGGCGAAACAGGAATTTCTC+CGG + chr1_3:73180542-73180561 None:intergenic 45.0%
TCTTTCAAAGCAGGCGAAAC+AGG + chr1_3:73180553-73180572 None:intergenic 45.0%
!! GCCTGCTTTGAAAGAGAGTT+TGG - chr1_3:73180558-73180577 Msa0139500:intron 45.0%
GCCAAACTCTCTTTCAAAGC+AGG + chr1_3:73180562-73180581 None:intergenic 45.0%
!! CTGCTATGATTTTGAAGGCG+AGG - chr1_3:73180647-73180666 Msa0139500:intron 45.0%
! TACCAAGTCCACAAAGTGCT+GGG + chr1_3:73180752-73180771 None:intergenic 45.0%
! GTGGACTTGGTAGTTATTCC+TGG - chr1_3:73180760-73180779 Msa0139500:intron 45.0%
AGCATTGCTCGTCACATAAG+TGG + chr1_3:73180961-73180980 None:intergenic 45.0%
GAGGTGTGTGGCTGAAAAAT+AGG - chr1_3:73181061-73181080 Msa0139500:intron 45.0%
GGCCAGAAAGGAATAAAGGA+GGG - chr1_3:73181275-73181294 Msa0139500:intron 45.0%
GCCAGAAAGGAATAAAGGAG+GGG - chr1_3:73181276-73181295 Msa0139500:intron 45.0%
TCCCCTCCTTTATTCCTTTC+TGG + chr1_3:73181280-73181299 None:intergenic 45.0%
TGAAGAATCATAGGGCCAGA+GGG - chr1_3:73181392-73181411 Msa0139500:intron 45.0%
GAGGGAGGCTCTTAAATAGT+TGG + chr1_3:73181637-73181656 None:intergenic 45.0%
! CTACATCCCTACTAGCTTGA+GGG + chr1_3:73181655-73181674 None:intergenic 45.0%
! TCTACATCCCTACTAGCTTG+AGG + chr1_3:73181656-73181675 None:intergenic 45.0%
! CTAACCTGTCCCTTTTGTGA+GGG + chr1_3:73181763-73181782 None:intergenic 45.0%
! TCTAACCTGTCCCTTTTGTG+AGG + chr1_3:73181764-73181783 None:intergenic 45.0%
!! TAAAAATATATAATTGAAAT+AGG + chr1_3:73177100-73177119 None:intergenic 5.0%
!!! ATTTTTTTTTAAAAAAAACA+TGG - chr1_3:73177572-73177591 Msa0139500:intron 5.0%
!! ATAATAATAATAAAAAAAAG+AGG - chr1_3:73178799-73178818 Msa0139500:intron 5.0%
!!! ATAGATTTTTTTTTTTTTTT+AGG + chr1_3:73179160-73179179 None:intergenic 5.0%
!! AAAAAATAAAACAAATTATT+AGG + chr1_3:73179766-73179785 None:intergenic 5.0%
CACCTTCACTCCAGTGATCA+TGG + chr1_3:73176004-73176023 None:intergenic 50.0%
CATGATCACTGGAGTGAAGG+TGG - chr1_3:73176002-73176021 Msa0139500:three_prime_UTR 50.0%
!! TAGGACTTGGTGGATGATGG+AGG + chr1_3:73176057-73176076 None:intergenic 50.0%
!! TCCTATTTCCTTGGTGGTGC+AGG - chr1_3:73176072-73176091 Msa0139500:three_prime_UTR 50.0%
ACCTGCACCACCAAGGAAAT+AGG + chr1_3:73176076-73176095 None:intergenic 50.0%
GTAAGGCCGAAAAGCCGTTA+AGG + chr1_3:73176257-73176276 None:intergenic 50.0%
TCGAGTCCTGATGTTTCGTG+AGG + chr1_3:73177349-73177368 None:intergenic 50.0%
TACTCTCCTGAGAGAGGTTG+TGG + chr1_3:73177865-73177884 None:intergenic 50.0%
TCGTGATACTCTCCTGAGAG+AGG + chr1_3:73177871-73177890 None:intergenic 50.0%
GTGATAAACACCTCCCCTCT+TGG + chr1_3:73178966-73178985 None:intergenic 50.0%
!!! CAATTTTTTCCACCAGGGGC+TGG - chr1_3:73180296-73180315 Msa0139500:intron 50.0%
! AAACAACAAGCCGCTTTCGG+AGG - chr1_3:73180498-73180517 Msa0139500:intron 50.0%
TTCCCAGCACTTTGTGGACT+TGG - chr1_3:73180747-73180766 Msa0139500:intron 50.0%
CTACCAAGTCCACAAAGTGC+TGG + chr1_3:73180753-73180772 None:intergenic 50.0%
CCACACACCTCCTTGAATTG+TGG + chr1_3:73181052-73181071 None:intergenic 50.0%
! CCACAATTCAAGGAGGTGTG+TGG - chr1_3:73181049-73181068 Msa0139500:intron 50.0%
GGGCCAGAAAGGAATAAAGG+AGG - chr1_3:73181274-73181293 Msa0139500:intron 50.0%
GTGAAGAATCATAGGGCCAG+AGG - chr1_3:73181391-73181410 Msa0139500:intron 50.0%
TCTTCCCTCACAAAAGGGAC+AGG - chr1_3:73181756-73181775 Msa0139500:five_prime_UTR 50.0%
GCAGCAGCATCCATGATCAC+TGG - chr1_3:73175991-73176010 Msa0139500:three_prime_UTR 55.0%
ATGTCGCCACAACCTCTCTC+AGG - chr1_3:73177856-73177875 Msa0139500:intron 55.0%
GGAGTCTTGCCCTTCCACTT+AGG + chr1_3:73179663-73179682 None:intergenic 55.0%
AAGAAAACACCAGCCCCTGG+TGG + chr1_3:73180308-73180327 None:intergenic 55.0%
CTGAAGAAAACACCAGCCCC+TGG + chr1_3:73180311-73180330 None:intergenic 55.0%
TCCAACACTGCCTCCGAAAG+CGG + chr1_3:73180511-73180530 None:intergenic 55.0%
! GCAGTGTTGGAGACCATGAC+CGG - chr1_3:73180520-73180539 Msa0139500:intron 55.0%
AGAGCCTCCCTCAAGCTAGT+AGG - chr1_3:73181645-73181664 Msa0139500:CDS 55.0%
GAGCCTCCCTCAAGCTAGTA+GGG - chr1_3:73181646-73181665 Msa0139500:CDS 55.0%
! CATCCCTACTAGCTTGAGGG+AGG + chr1_3:73181652-73181671 None:intergenic 55.0%
!! GATGGAGGTGTCACCACTGC+CGG + chr1_3:73176042-73176061 None:intergenic 60.0%
! GCCGCTTTCGGAGGCAGTGT+TGG - chr1_3:73180507-73180526 Msa0139500:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 73175811 73181885 73175811 ID=Msa0139500;Name=Msa0139500
chr1_3 mRNA 73175811 73181885 73175811 ID=Msa0139500-mRNA-1;Parent=Msa0139500;Name=Msa0139500-mRNA-1;_AED=0.39;_eAED=0.39;_QI=171|1|1|1|0.6|0.5|6|608|226
chr1_3 exon 73175811 73176164 73175811 ID=Msa0139500-mRNA-1:exon:25559;Parent=Msa0139500-mRNA-1
chr1_3 exon 73176191 73176353 73176191 ID=Msa0139500-mRNA-1:exon:25558;Parent=Msa0139500-mRNA-1
chr1_3 exon 73176972 73177248 73176972 ID=Msa0139500-mRNA-1:exon:25557;Parent=Msa0139500-mRNA-1
chr1_3 exon 73177341 73177564 73177341 ID=Msa0139500-mRNA-1:exon:25556;Parent=Msa0139500-mRNA-1
chr1_3 exon 73177967 73178125 73177967 ID=Msa0139500-mRNA-1:exon:25555;Parent=Msa0139500-mRNA-1
chr1_3 exon 73181603 73181885 73181603 ID=Msa0139500-mRNA-1:exon:25554;Parent=Msa0139500-mRNA-1
chr1_3 five_prime_UTR 73181715 73181885 73181715 ID=Msa0139500-mRNA-1:five_prime_utr;Parent=Msa0139500-mRNA-1
chr1_3 CDS 73181603 73181714 73181603 ID=Msa0139500-mRNA-1:cds;Parent=Msa0139500-mRNA-1
chr1_3 CDS 73177967 73178125 73177967 ID=Msa0139500-mRNA-1:cds;Parent=Msa0139500-mRNA-1
chr1_3 CDS 73177341 73177564 73177341 ID=Msa0139500-mRNA-1:cds;Parent=Msa0139500-mRNA-1
chr1_3 CDS 73177063 73177248 73177063 ID=Msa0139500-mRNA-1:cds;Parent=Msa0139500-mRNA-1
chr1_3 three_prime_UTR 73176972 73177062 73176972 ID=Msa0139500-mRNA-1:three_prime_utr;Parent=Msa0139500-mRNA-1
chr1_3 three_prime_UTR 73176191 73176353 73176191 ID=Msa0139500-mRNA-1:three_prime_utr;Parent=Msa0139500-mRNA-1
chr1_3 three_prime_UTR 73175811 73176164 73175811 ID=Msa0139500-mRNA-1:three_prime_utr;Parent=Msa0139500-mRNA-1
Gene Sequence

>Msa0139500

ATGGCAAAGGCAGCAGCATCCATGATCACTGGAGTGAAGGTGGAGTTCATTGAATTTCCGGCAGTGGTGACACCTCCATCATCCACCAAGTCCTATTTCCTTGGTGGTGCAGGGGTGAGAGGGTTAGATATTGATGGAGAGTTTGTGAAGTTCACTGTATTAGGAGTTTACTTGGAAGAAAAGGCTATAGCATCACTTACTCCTAAGTGGAAGGGCAAGACTCCATCTCAGCTCTTTGAATCCCTTGATTTCTACCGAGATATCATCAAAGGTCCCTTTGAGAAATTTATTCGATGTACAAAGGTGAGAACACTAGAAGGTAGTGAATATGTGAGAAAGGTATCAGAAAATTGCATTGCCCATATGAAATCTGAAGGAACATATGGCGATGCAGAAGAAAAAGCCATTCAAGAACTTAGAGAAGCCTTTAAGGTTCAATTTTTTCCACCAGGGGCTGGTGTTTTCTTCAGACAAACACCAAATGGAACATTAGGGCTTAGATTCTCCAAAGATGAGACAATACCTGAACATGAGTATGCTGTTATAAACAACAAGCCGCTTTCGGAGGCAGTGTTGGAGACCATGACCGGAGAAATTCCTGTTTCGCCTGCTTTGAAAGAGAGTTTGGCTACAAGATTTTGTGAGTTTATGAAGATTGACAGCTTCAACATTGGAAACTGA

Protein sequence

>Msa0139500

MAKAAASMITGVKVEFIEFPAVVTPPSSTKSYFLGGAGVRGLDIDGEFVKFTVLGVYLEEKAIASLTPKWKGKTPSQLFESLDFYRDIIKGPFEKFIRCTKVRTLEGSEYVRKVSENCIAHMKSEGTYGDAEEKAIQELREAFKVQFFPPGAGVFFRQTPNGTLGLRFSKDETIPEHEYAVINNKPLSEAVLETMTGEIPVSPALKESLATRFCEFMKIDSFNIGN*