AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0567330


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0567330 MtrunA17_Chr8g0382281 97.460 315 8 0 1 315 1 315 0.0 625
Msa0567330 MtrunA17_Chr5g0425971 66.349 315 106 0 1 315 1 315 2.87e-155 437
Msa0567330 MtrunA17_Chr8g0352611 51.429 315 151 2 1 315 1 313 5.11e-105 309
Msa0567330 MtrunA17_Chr3g0083921 50.476 315 155 1 1 315 1 314 1.15e-103 306
Msa0567330 MtrunA17_Chr3g0083901 49.524 315 157 2 1 314 1 314 9.98e-103 303
Msa0567330 MtrunA17_Chr8g0352621 51.118 313 149 2 1 312 1 310 1.43e-102 303
Msa0567330 MtrunA17_Chr8g0352591 48.397 312 149 2 1 312 1 300 7.79e-93 278
Msa0567330 MtrunA17_Chr2g0293441 43.234 303 172 0 12 314 11 313 1.69e-89 270
Msa0567330 MtrunA17_Chr8g0352571 42.857 315 177 1 1 312 1 315 4.25e-82 251
Msa0567330 MtrunA17_Chr8g0393281 37.855 317 193 3 1 315 1 315 1.46e-72 226
Msa0567330 MtrunA17_Chr1g0162071 36.076 316 198 3 1 314 1 314 1.27e-66 211
Msa0567330 MtrunA17_Chr6g0479411 35.783 313 199 2 1 312 28 339 5.00e-65 208
Msa0567330 MtrunA17_Chr6g0479421 37.580 314 192 3 1 312 1 312 1.11e-64 206
Msa0567330 MtrunA17_Chr1g0210981 36.624 314 195 3 1 312 1 312 1.81e-62 201
Msa0567330 MtrunA17_Chr6g0479391 36.943 314 194 3 1 312 1 312 3.24e-56 184
Msa0567330 MtrunA17_Chr8g0352581 36.792 318 172 8 14 312 4 311 3.59e-50 169
Msa0567330 MtrunA17_Chr6g0461141 26.277 274 194 5 45 310 34 307 4.93e-23 97.1
Msa0567330 MtrunA17_Chr3g0084011 51.351 74 35 1 1 74 1 73 1.47e-17 77.0
Msa0567330 MtrunA17_Chr3g0084021 56.061 66 29 0 145 210 5 70 1.72e-17 75.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0567330 AT5G65020.1 71.656 314 88 1 1 313 1 314 4.40e-170 474
Msa0567330 AT5G10230.1 71.019 314 91 0 1 314 1 314 1.87e-167 468
Msa0567330 AT5G10220.1 69.304 316 95 1 1 314 1 316 3.07e-162 455
Msa0567330 AT5G65020.2 72.664 289 78 1 26 313 11 299 2.59e-157 442
Msa0567330 AT1G35720.1 66.772 316 104 1 1 315 1 316 8.54e-155 436
Msa0567330 AT5G12380.1 51.118 313 152 1 1 313 1 312 1.44e-110 323
Msa0567330 AT2G38760.1 42.138 318 178 2 1 312 1 318 1.63e-82 252
Msa0567330 AT1G68090.1 37.380 313 195 1 1 312 1 313 8.44e-64 204
Msa0567330 AT1G68090.2 37.349 249 151 3 1 244 1 249 2.08e-43 149
Msa0567330 AT2G38750.2 35.526 304 171 6 26 311 2 298 2.87e-43 150
Msa0567330 AT2G38750.1 35.505 307 173 6 23 311 16 315 4.08e-43 151

Find 88 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTATTGAGGGCAGCAATTA+AGG 0.189714 4_1:-68704836 Msa0567330:CDS
AATCACTATAACAATGAGTT+TGG 0.243154 4_1:-68705195 Msa0567330:CDS
ACCCCATAATTCATGGAAAA+AGG 0.279086 4_1:-68704206 Msa0567330:three_prime_UTR
AATATAATCGATCCGTAATA+AGG 0.286006 4_1:+68704336 None:intergenic
TCATATTTCTCTCCTTATTA+CGG 0.324655 4_1:-68704348 Msa0567330:three_prime_UTR
TCGCCATTGTGTTTGTGTTC+AGG 0.345562 4_1:+68706887 None:intergenic
ATCTCCACTTGAACTTCTTA+AGG 0.350377 4_1:-68705822 Msa0567330:CDS
TCATGAGAAGATTGCGGATA+AGG 0.357945 4_1:-68705286 Msa0567330:CDS
GATGTTGCCTATCATACTTC+TGG 0.369007 4_1:-68705755 Msa0567330:CDS
GTAGTCATGGAGTGGCTGTT+TGG 0.374106 4_1:-68704560 Msa0567330:three_prime_UTR
GCAATTGACAAAGACACTTC+TGG 0.392622 4_1:-68704646 Msa0567330:CDS
TACGCATACCCCATAATTCA+TGG 0.395314 4_1:-68704213 Msa0567330:three_prime_UTR
AGTTCCTCAAAATATTTCTC+AGG 0.401647 4_1:+68704802 None:intergenic
TTATTGAGGGCAGCAATTAA+GGG 0.414248 4_1:-68704835 Msa0567330:CDS
ATCACTATAACAATGAGTTT+GGG 0.415323 4_1:-68705194 Msa0567330:CDS
TCTTGATAGTATACAGAATT+CGG 0.419227 4_1:-68704492 Msa0567330:three_prime_UTR
AGCTGTTTCATTATTTAAGA+AGG 0.431198 4_1:+68704372 None:intergenic
GAGGAACACTGTTTCTTCTC+TGG 0.435446 4_1:+68704677 None:intergenic
GCAGGATTTGGAAACTGATT+CGG 0.447953 4_1:-68704875 Msa0567330:intron
AGTTTATTAAACTTATCTCC+TGG 0.453050 4_1:-68704163 Msa0567330:three_prime_UTR
TGTGGGCATACACCGTTATG+AGG 0.458266 4_1:-68705355 Msa0567330:CDS
TTGTTGTTACAATCCTGATC+AGG 0.458748 4_1:+68705247 None:intergenic
ACAGGATGGGGAACGAATGA+AGG 0.469249 4_1:-68706294 Msa0567330:intron
GATAGGCAACATCTTCTTCA+AGG 0.470858 4_1:+68705765 None:intergenic
ACAATCATGATGACCTGATC+AGG 0.471756 4_1:-68705260 Msa0567330:CDS
CAAAATCACGCTGATGATGA+AGG 0.476971 4_1:+68704524 None:intergenic
AACAGCCACTCCATGACTAC+TGG 0.479223 4_1:+68704563 None:intergenic
ATGAATATCTGAAATTATTG+AGG 0.486467 4_1:-68704849 Msa0567330:CDS
AGCTGTGCTGCTGTGGACAT+TGG 0.493673 4_1:-68705936 Msa0567330:CDS
GAAAATTCTCCTTGCACTGA+TGG 0.493991 4_1:-68704614 Msa0567330:CDS
GAGAAGAAACAGTGTTCCTC+TGG 0.495918 4_1:-68704674 Msa0567330:CDS
TGAATACTGAAAGCCAATGT+TGG 0.496726 4_1:+68706936 None:intergenic
GAGCTGCATTTCTATGAGCC+AGG 0.520838 4_1:+68706256 None:intergenic
CTTTAAGAAGATCTTCTCCA+TGG 0.522934 4_1:+68706199 None:intergenic
GAATACTGAAAGCCAATGTT+GGG 0.523577 4_1:+68706937 None:intergenic
TGAATATCTGAAATTATTGA+GGG 0.538168 4_1:-68704848 Msa0567330:CDS
TAGGCTGGCTATAAACAAGA+TGG 0.541067 4_1:-68704776 Msa0567330:CDS
AGCCAATGTTGGGAGGGAGC+AGG 0.542457 4_1:+68706947 None:intergenic
AAAATTCTCCTTGCACTGAT+GGG 0.542533 4_1:-68704613 Msa0567330:CDS
AACAGAAAGCTGTGCTGCTG+TGG 0.544066 4_1:-68705943 Msa0567330:intron
AATTGTTCACTGTCTTCTGA+TGG 0.548405 4_1:+68706835 None:intergenic
AAGTTCAAGTGGAGATCTTG+TGG 0.549416 4_1:+68705829 None:intergenic
GATGGAGAAGGAACGTGAGA+GGG 0.549677 4_1:+68706853 None:intergenic
ACTTGAAACAAACACTCCCT+TGG 0.550478 4_1:+68704183 None:intergenic
CTTAATCTGTCCAGTAGTCA+TGG 0.553997 4_1:-68704573 Msa0567330:three_prime_UTR
TCTTGTTTATAGCCAGCCTA+AGG 0.557307 4_1:+68704779 None:intergenic
AGGCTTGATAATATCGATCC+TGG 0.557589 4_1:-68706274 Msa0567330:CDS
ATGAATTATGGGGTATGCGT+AGG 0.559037 4_1:+68704215 None:intergenic
AACCTGCTCCCTCCCAACAT+TGG 0.565034 4_1:-68706949 Msa0567330:five_prime_UTR
GTTCCTCAAAATATTTCTCA+GGG 0.565806 4_1:+68704803 None:intergenic
GCTGCTGTGGACATTGGATC+CGG 0.567043 4_1:-68705930 Msa0567330:CDS
GGGTCTGCGTGTAAGTTTCG+CGG 0.567457 4_1:+68706220 None:intergenic
GATGTCACCAGAAGTATGAT+AGG 0.569427 4_1:+68705748 None:intergenic
CAGAATTCGGTGACTTGCTG+TGG 0.582038 4_1:-68704479 Msa0567330:three_prime_UTR
GGTTGATTTGCAGCGAATTG+CGG 0.585356 4_1:-68704707 Msa0567330:CDS
AAAATCACGCTGATGATGAA+GGG 0.586986 4_1:+68704525 None:intergenic
AAGTGTCTTTGTCAATTGCA+CGG 0.589714 4_1:+68704650 None:intergenic
TACTGAAAGCCAATGTTGGG+AGG 0.589846 4_1:+68706940 None:intergenic
GTGATATGTATGAACTATTG+TGG 0.591619 4_1:-68704445 Msa0567330:three_prime_UTR
TTTAAGAAGATCTTCTCCAT+GGG 0.594102 4_1:+68706200 None:intergenic
TTGTCAATTGCACGGTCCAG+AGG 0.595483 4_1:+68704658 None:intergenic
TCACCTCATCTCCCTCATAA+CGG 0.595788 4_1:+68705343 None:intergenic
TGATGGAGAAGGAACGTGAG+AGG 0.596195 4_1:+68706852 None:intergenic
ATAGGCAACATCTTCTTCAA+GGG 0.598603 4_1:+68705766 None:intergenic
TGATTTGCAGCGAATTGCGG+AGG 0.598869 4_1:-68704704 Msa0567330:CDS
TGAAAATGCTCTTACTAGAG+TGG 0.606160 4_1:-68704746 Msa0567330:CDS
CATCATGTCCCATCAGTGCA+AGG 0.606991 4_1:+68704605 None:intergenic
ATTGCTTCATGAGAAGATTG+CGG 0.611914 4_1:-68705292 Msa0567330:CDS
GTGGGCATACACCGTTATGA+GGG 0.616438 4_1:-68705354 Msa0567330:CDS
GAAACTTACACGCAGACCCA+TGG 0.623172 4_1:-68706216 Msa0567330:CDS
AGGCTGGCTATAAACAAGAT+GGG 0.624496 4_1:-68704775 Msa0567330:CDS
ACTGAAAGCCAATGTTGGGA+GGG 0.625318 4_1:+68706941 None:intergenic
AGATGAGGTGAACATGACAT+TGG 0.629033 4_1:-68705331 Msa0567330:CDS
TAACGGTGTATGCCCACAAG+AGG 0.631350 4_1:+68705360 None:intergenic
CTCAAAATATTTCTCAGGGT+AGG 0.640542 4_1:+68704807 None:intergenic
TCACTGTCTTCTGATGGAGA+AGG 0.641986 4_1:+68706841 None:intergenic
ATGGAGAAGGAACGTGAGAG+GGG 0.642321 4_1:+68706854 None:intergenic
TTTGCCTTAAGAAGTTCAAG+TGG 0.642700 4_1:+68705818 None:intergenic
ACACCGTTATGAGGGAGATG+AGG 0.647772 4_1:-68705346 Msa0567330:CDS
TCTGTCCAGTAGTCATGGAG+TGG 0.655004 4_1:-68704568 Msa0567330:three_prime_UTR
TTCAAACAATTCGATCATCG+TGG 0.667000 4_1:-68705861 Msa0567330:CDS
TACTTCTGGTGACATCCGCA+AGG 0.668178 4_1:-68705741 Msa0567330:intron
AGTGGTGACAACTAGAGCTG+AGG 0.671413 4_1:-68704728 Msa0567330:CDS
GTTTGGGAATGTAATAGACA+AGG 0.682197 4_1:-68705178 Msa0567330:intron
ATCGATCTGTGTGTATAATG+TGG 0.684795 4_1:+68706910 None:intergenic
TGATCAGGATTGTAACAACA+AGG 0.686508 4_1:-68705245 Msa0567330:CDS
GAAGACAGTGAACAATTGCG+CGG 0.707759 4_1:-68706829 Msa0567330:CDS
GATCCTGAACACAAACACAA+TGG 0.715353 4_1:-68706890 Msa0567330:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAGTTTAAAATTTTGATATA+TGG - chr4_1:68704953-68704972 Msa0567330:intron 10.0%
!!! TAAATAATATGTTTTGAATA+TGG - chr4_1:68706676-68706695 Msa0567330:intron 10.0%
!!! ATTAACTTCCTTTTAATTAA+AGG - chr4_1:68706099-68706118 Msa0567330:intron 15.0%
!!! TTAACTTCCTTTTAATTAAA+GGG - chr4_1:68706100-68706119 Msa0567330:intron 15.0%
!! TGAAATAAAAGTCAAAGAAA+TGG + chr4_1:68704319-68704338 None:intergenic 20.0%
!! CTAATATCTTAATTAGATCA+TGG - chr4_1:68704417-68704436 Msa0567330:three_prime_UTR 20.0%
!!! ATATTTCTAGTTAATGAATG+TGG - chr4_1:68704529-68704548 Msa0567330:three_prime_UTR 20.0%
!! CAAGAAATTAGTAAGTTTAA+GGG + chr4_1:68705384-68705403 None:intergenic 20.0%
!! TCAAGAAATTAGTAAGTTTA+AGG + chr4_1:68705385-68705404 None:intergenic 20.0%
!!! TGTAAATCTTTTCAACTTTA+AGG - chr4_1:68705504-68705523 Msa0567330:intron 20.0%
!! AAAGGTTAAATACATATAAC+TGG + chr4_1:68705623-68705642 None:intergenic 20.0%
!! ACAGAAATAAGAATCATAAA+TGG + chr4_1:68705957-68705976 None:intergenic 20.0%
!! ATATTTCTTGAAGAGAAAAA+TGG + chr4_1:68706045-68706064 None:intergenic 20.0%
!! CTTCATCAATAATATGATTA+TGG + chr4_1:68706077-68706096 None:intergenic 20.0%
!! CTATAATCCCTTTAATTAAA+AGG + chr4_1:68706110-68706129 None:intergenic 20.0%
!!! ATGAATATCTGAAATTATTG+AGG - chr4_1:68706246-68706265 Msa0567330:CDS 20.0%
!!! TGAATATCTGAAATTATTGA+GGG - chr4_1:68706247-68706266 Msa0567330:CDS 20.0%
!! TATTTCCAAAAAATTATTCC+AGG + chr4_1:68706953-68706972 None:intergenic 20.0%
! TAAAAGTCAAAGAAATGGAT+CGG + chr4_1:68704314-68704333 None:intergenic 25.0%
!! TTTTTCCTTTGTGTTTTTCA+TGG - chr4_1:68704720-68704739 Msa0567330:CDS 25.0%
! TCAACAATTGTTAGTGAAAA+TGG + chr4_1:68705027-68705046 None:intergenic 25.0%
! TATATGAATAACCTTGACTA+AGG - chr4_1:68705081-68705100 Msa0567330:intron 25.0%
!!! CAAGGTATTTTCATGTAATA+AGG - chr4_1:68705112-68705131 Msa0567330:intron 25.0%
! AAAATCTTCCAAAATTTACG+TGG - chr4_1:68705481-68705500 Msa0567330:intron 25.0%
!! ATTCTTTTGACATAAATCTG+AGG + chr4_1:68705555-68705574 None:intergenic 25.0%
! GTTAAATACATATAACTGGT+TGG + chr4_1:68705619-68705638 None:intergenic 25.0%
! AACAAAATTTCATCAGACAA+GGG + chr4_1:68705688-68705707 None:intergenic 25.0%
! AAACAAAATTTCATCAGACA+AGG + chr4_1:68705689-68705708 None:intergenic 25.0%
! AATCACTATAACAATGAGTT+TGG - chr4_1:68705900-68705919 Msa0567330:CDS 25.0%
! ATCACTATAACAATGAGTTT+GGG - chr4_1:68705901-68705920 Msa0567330:CDS 25.0%
! TCAATAATATGATTATGGCT+GGG + chr4_1:68706072-68706091 None:intergenic 25.0%
! ATCAATAATATGATTATGGC+TGG + chr4_1:68706073-68706092 None:intergenic 25.0%
! TCAATTTCTTCTGTAGAAAA+AGG - chr4_1:68706144-68706163 Msa0567330:intron 25.0%
!!! AGGATAACCTTTTTTTTACT+AGG - chr4_1:68706164-68706183 Msa0567330:intron 25.0%
!!! GGATAACCTTTTTTTTACTA+GGG - chr4_1:68706165-68706184 Msa0567330:intron 25.0%
! TACAAACCCTAGTAAAAAAA+AGG + chr4_1:68706174-68706193 None:intergenic 25.0%
!! TCTTGATAGTATACAGAATT+CGG - chr4_1:68706603-68706622 Msa0567330:intron 25.0%
!! AGCTGTTTCATTATTTAAGA+AGG + chr4_1:68706726-68706745 None:intergenic 25.0%
! TCATATTTCTCTCCTTATTA+CGG - chr4_1:68706747-68706766 Msa0567330:intron 25.0%
! AATATAATCGATCCGTAATA+AGG + chr4_1:68706762-68706781 None:intergenic 25.0%
! TTTCATTATTTAAACTCCCT+TGG + chr4_1:68706818-68706837 None:intergenic 25.0%
! TCATATTTCTCTCCTTATTA+CGG - chr4_1:68706747-68706766 Msa0567330:intron 25.0%
! AATATAATCGATCCGTAATA+AGG + chr4_1:68706762-68706781 None:intergenic 25.0%
! AGTTTATTAAACTTATCTCC+TGG - chr4_1:68706932-68706951 Msa0567330:five_prime_UTR 25.0%
!!! TATCTCCTGGAATAATTTTT+TGG - chr4_1:68706945-68706964 Msa0567330:five_prime_UTR 25.0%
AATAAGCAGTGCTCAAATAA+GGG - chr4_1:68704690-68704709 Msa0567330:CDS 30.0%
AAACAACAATATGAATGGAC+AGG + chr4_1:68704766-68704785 None:intergenic 30.0%
!! GTCCATTCATATTGTTGTTT+CGG - chr4_1:68704766-68704785 Msa0567330:CDS 30.0%
!! TTTCGGTGACATATTTTTAC+AGG - chr4_1:68704783-68704802 Msa0567330:CDS 30.0%
!! GTGACATATTTTTACAGGAT+GGG - chr4_1:68704788-68704807 Msa0567330:CDS 30.0%
!! TGACATATTTTTACAGGATG+GGG - chr4_1:68704789-68704808 Msa0567330:CDS 30.0%
TTTAAGAAGATCTTCTCCAT+GGG + chr4_1:68704898-68704917 None:intergenic 30.0%
!! AGAACTTTCAAGTGATTTTG+AGG - chr4_1:68704929-68704948 Msa0567330:intron 30.0%
!!! CAACATTTTAGTTGCTTGAT+TGG + chr4_1:68705212-68705231 None:intergenic 30.0%
! GATTTACACCACGTAAATTT+TGG + chr4_1:68705492-68705511 None:intergenic 30.0%
GGCATTCTTCTACTAAATAA+AGG + chr4_1:68705534-68705553 None:intergenic 30.0%
GCATAAGCATAAACATGAAA+AGG + chr4_1:68705641-68705660 None:intergenic 30.0%
ACAAAATTTCATCAGACAAG+GGG + chr4_1:68705687-68705706 None:intergenic 30.0%
! TGATTCTTCTCAAAAGCTTT+TGG - chr4_1:68705710-68705729 Msa0567330:intron 30.0%
! TAGACAAGGTATGAATGTTT+TGG - chr4_1:68705931-68705950 Msa0567330:CDS 30.0%
GTTCCTCAAAATATTTCTCA+GGG + chr4_1:68706295-68706314 None:intergenic 30.0%
AGTTCCTCAAAATATTTCTC+AGG + chr4_1:68706296-68706315 None:intergenic 30.0%
!! AATATTTTGAGGAACTCCTT+AGG - chr4_1:68706300-68706319 Msa0567330:intron 30.0%
!!! TCTAGTAAGAGCATTTTCAT+CGG + chr4_1:68706348-68706367 None:intergenic 30.0%
GTGATATGTATGAACTATTG+TGG - chr4_1:68706650-68706669 Msa0567330:intron 30.0%
GAATACTGAAAGCCAATGTT+GGG + chr4_1:68704161-68704180 None:intergenic 35.0%
TGAATACTGAAAGCCAATGT+TGG + chr4_1:68704162-68704181 None:intergenic 35.0%
ATCGATCTGTGTGTATAATG+TGG + chr4_1:68704188-68704207 None:intergenic 35.0%
AATTGTTCACTGTCTTCTGA+TGG + chr4_1:68704263-68704282 None:intergenic 35.0%
TTTGGACTACATGAAGAGAT+CGG + chr4_1:68704608-68704627 None:intergenic 35.0%
GATTCATCGTGATCATGATT+TGG + chr4_1:68704626-68704645 None:intergenic 35.0%
GAATAAGCAGTGCTCAAATA+AGG - chr4_1:68704689-68704708 Msa0567330:CDS 35.0%
TCATGCCATGAAAAACACAA+AGG + chr4_1:68704728-68704747 None:intergenic 35.0%
CACCGAAACAACAATATGAA+TGG + chr4_1:68704771-68704790 None:intergenic 35.0%
!! GGTGACATATTTTTACAGGA+TGG - chr4_1:68704787-68704806 Msa0567330:CDS 35.0%
! CTTTAAGAAGATCTTCTCCA+TGG + chr4_1:68704899-68704918 None:intergenic 35.0%
TTGACATGAAACCTTAGTCA+AGG + chr4_1:68705095-68705114 None:intergenic 35.0%
TTGACTAAGGTTTCATGTCA+AGG - chr4_1:68705094-68705113 Msa0567330:intron 35.0%
TTCAAACAATTCGATCATCG+TGG - chr4_1:68705234-68705253 Msa0567330:CDS 35.0%
ATCTCCACTTGAACTTCTTA+AGG - chr4_1:68705273-68705292 Msa0567330:CDS 35.0%
TTTGCCTTAAGAAGTTCAAG+TGG + chr4_1:68705280-68705299 None:intergenic 35.0%
!! CTTCAAGGGACTTTTTGAAA+CGG + chr4_1:68705318-68705337 None:intergenic 35.0%
ATAGGCAACATCTTCTTCAA+GGG + chr4_1:68705332-68705351 None:intergenic 35.0%
AAGTTTAAGGGTTTACCTTG+CGG + chr4_1:68705372-68705391 None:intergenic 35.0%
TTCCAAAAATACACCCATCT+TGG - chr4_1:68705582-68705601 Msa0567330:intron 35.0%
AAAAATACACCCATCTTGGT+GGG - chr4_1:68705586-68705605 Msa0567330:intron 35.0%
AAAAACGTCAGATCAAGACA+TGG + chr4_1:68705663-68705682 None:intergenic 35.0%
CAAAATTTCATCAGACAAGG+GGG + chr4_1:68705686-68705705 None:intergenic 35.0%
ATTGCTTCATGAGAAGATTG+CGG - chr4_1:68705803-68705822 Msa0567330:CDS 35.0%
! TTGTTGTTACAATCCTGATC+AGG + chr4_1:68705851-68705870 None:intergenic 35.0%
TGATCAGGATTGTAACAACA+AGG - chr4_1:68705850-68705869 Msa0567330:CDS 35.0%
GTTTGGGAATGTAATAGACA+AGG - chr4_1:68705917-68705936 Msa0567330:CDS 35.0%
ATTATTGAGGGCAGCAATTA+AGG - chr4_1:68706259-68706278 Msa0567330:CDS 35.0%
TTATTGAGGGCAGCAATTAA+GGG - chr4_1:68706260-68706279 Msa0567330:CDS 35.0%
CTCAAAATATTTCTCAGGGT+AGG + chr4_1:68706291-68706310 None:intergenic 35.0%
! CTACCCTGAGAAATATTTTG+AGG - chr4_1:68706289-68706308 Msa0567330:CDS 35.0%
TGAAAATGCTCTTACTAGAG+TGG - chr4_1:68706349-68706368 Msa0567330:intron 35.0%
AAGTGTCTTTGTCAATTGCA+CGG + chr4_1:68706448-68706467 None:intergenic 35.0%
! AAAATTCTCCTTGCACTGAT+GGG - chr4_1:68706482-68706501 Msa0567330:intron 35.0%
! AAAATCACGCTGATGATGAA+GGG + chr4_1:68706573-68706592 None:intergenic 35.0%
ACCCCATAATTCATGGAAAA+AGG - chr4_1:68706792-68706811 Msa0567330:intron 35.0%
! GCCTTTTTCCATGAATTATG+GGG + chr4_1:68706796-68706815 None:intergenic 35.0%
! GGCCTTTTTCCATGAATTAT+GGG + chr4_1:68706797-68706816 None:intergenic 35.0%
! TGGCCTTTTTCCATGAATTA+TGG + chr4_1:68706798-68706817 None:intergenic 35.0%
TAATTCATGGAAAAAGGCCA+AGG - chr4_1:68706798-68706817 Msa0567330:intron 35.0%
AATTCATGGAAAAAGGCCAA+GGG - chr4_1:68706799-68706818 Msa0567330:intron 35.0%
ACCCCATAATTCATGGAAAA+AGG - chr4_1:68706792-68706811 Msa0567330:intron 35.0%
! GCCTTTTTCCATGAATTATG+GGG + chr4_1:68706796-68706815 None:intergenic 35.0%
! GGCCTTTTTCCATGAATTAT+GGG + chr4_1:68706797-68706816 None:intergenic 35.0%
! TGGCCTTTTTCCATGAATTA+TGG + chr4_1:68706798-68706817 None:intergenic 35.0%
TAATTCATGGAAAAAGGCCA+AGG - chr4_1:68706798-68706817 Msa0567330:intron 35.0%
AATTCATGGAAAAAGGCCAA+GGG - chr4_1:68706799-68706818 Msa0567330:intron 35.0%
GATCCTGAACACAAACACAA+TGG - chr4_1:68704205-68704224 Msa0567330:three_prime_UTR 40.0%
AGTCAAAGAAATGGATCGGT+AGG + chr4_1:68704310-68704329 None:intergenic 40.0%
ACACTCCTATGTTACGTGTT+TGG - chr4_1:68704463-68704482 Msa0567330:three_prime_UTR 40.0%
TCCTATGTTACGTGTTTGGT+TGG - chr4_1:68704467-68704486 Msa0567330:three_prime_UTR 40.0%
ACCAACCAAACACGTAACAT+AGG + chr4_1:68704471-68704490 None:intergenic 40.0%
! AGGCTTGATAATATCGATCC+TGG - chr4_1:68704821-68704840 Msa0567330:CDS 40.0%
AAGTTCAAGTGGAGATCTTG+TGG + chr4_1:68705269-68705288 None:intergenic 40.0%
GATAGGCAACATCTTCTTCA+AGG + chr4_1:68705333-68705352 None:intergenic 40.0%
GATGTTGCCTATCATACTTC+TGG - chr4_1:68705340-68705359 Msa0567330:CDS 40.0%
! GATGTCACCAGAAGTATGAT+AGG + chr4_1:68705350-68705369 None:intergenic 40.0%
! CACCAAGATGGGTGTATTTT+TGG + chr4_1:68705587-68705606 None:intergenic 40.0%
CAAAAATACACCCATCTTGG+TGG - chr4_1:68705585-68705604 Msa0567330:intron 40.0%
!!! AAAGCTTTTGGTTCCTCTTG+TGG - chr4_1:68705722-68705741 Msa0567330:intron 40.0%
!!! AAGCTTTTGGTTCCTCTTGT+GGG - chr4_1:68705723-68705742 Msa0567330:intron 40.0%
AGATGAGGTGAACATGACAT+TGG - chr4_1:68705764-68705783 Msa0567330:CDS 40.0%
TCATGAGAAGATTGCGGATA+AGG - chr4_1:68705809-68705828 Msa0567330:CDS 40.0%
ACAATCATGATGACCTGATC+AGG - chr4_1:68705835-68705854 Msa0567330:CDS 40.0%
! ATTAGATCTGCCCTTTTGCT+GGG + chr4_1:68705991-68706010 None:intergenic 40.0%
! TATTAGATCTGCCCTTTTGC+TGG + chr4_1:68705992-68706011 None:intergenic 40.0%
GCAGGATTTGGAAACTGATT+CGG - chr4_1:68706220-68706239 Msa0567330:CDS 40.0%
! TCTTGTTTATAGCCAGCCTA+AGG + chr4_1:68706319-68706338 None:intergenic 40.0%
! TAGGCTGGCTATAAACAAGA+TGG - chr4_1:68706319-68706338 Msa0567330:intron 40.0%
! AGGCTGGCTATAAACAAGAT+GGG - chr4_1:68706320-68706339 Msa0567330:intron 40.0%
GCAATTGACAAAGACACTTC+TGG - chr4_1:68706449-68706468 Msa0567330:intron 40.0%
GAAAATTCTCCTTGCACTGA+TGG - chr4_1:68706481-68706500 Msa0567330:intron 40.0%
CTTAATCTGTCCAGTAGTCA+TGG - chr4_1:68706522-68706541 Msa0567330:intron 40.0%
! CAAAATCACGCTGATGATGA+AGG + chr4_1:68706574-68706593 None:intergenic 40.0%
ATGAATTATGGGGTATGCGT+AGG + chr4_1:68706786-68706805 None:intergenic 40.0%
TACGCATACCCCATAATTCA+TGG - chr4_1:68706785-68706804 Msa0567330:intron 40.0%
ATGAATTATGGGGTATGCGT+AGG + chr4_1:68706786-68706805 None:intergenic 40.0%
TACGCATACCCCATAATTCA+TGG - chr4_1:68706785-68706804 Msa0567330:intron 40.0%
ACTTGAAACAAACACTCCCT+TGG + chr4_1:68706915-68706934 None:intergenic 40.0%
ACTGAAAGCCAATGTTGGGA+GGG + chr4_1:68704157-68704176 None:intergenic 45.0%
TACTGAAAGCCAATGTTGGG+AGG + chr4_1:68704158-68704177 None:intergenic 45.0%
TCGCCATTGTGTTTGTGTTC+AGG + chr4_1:68704211-68704230 None:intergenic 45.0%
TCACTGTCTTCTGATGGAGA+AGG + chr4_1:68704257-68704276 None:intergenic 45.0%
GAAGACAGTGAACAATTGCG+CGG - chr4_1:68704266-68704285 Msa0567330:intron 45.0%
GGCTAAAAATGCATCACGCT+CGG + chr4_1:68705191-68705210 None:intergenic 45.0%
TCACCTCATCTCCCTCATAA+CGG + chr4_1:68705755-68705774 None:intergenic 45.0%
TTGCAACACTCCCAGCAAAA+GGG - chr4_1:68705978-68705997 Msa0567330:intron 45.0%
TCGAACTAACGTTGAGCTTC+TGG - chr4_1:68706195-68706214 Msa0567330:CDS 45.0%
!! TTTTGAGGAACTCCTTAGGC+TGG - chr4_1:68706304-68706323 Msa0567330:intron 45.0%
!! GGTTGATTTGCAGCGAATTG+CGG - chr4_1:68706388-68706407 Msa0567330:intron 45.0%
! GAGGAACACTGTTTCTTCTC+TGG + chr4_1:68706421-68706440 None:intergenic 45.0%
GAGAAGAAACAGTGTTCCTC+TGG - chr4_1:68706421-68706440 Msa0567330:intron 45.0%
! TCATCAGCGTGATTTTGCTG+CGG - chr4_1:68706577-68706596 Msa0567330:intron 45.0%
!!! ATTTTTATTATTATTACTTT+TGG - chr4_1:68704381-68704400 Msa0567330:three_prime_UTR 5.0%
ATGGAGAAGGAACGTGAGAG+GGG + chr4_1:68704244-68704263 None:intergenic 50.0%
GATGGAGAAGGAACGTGAGA+GGG + chr4_1:68704245-68704264 None:intergenic 50.0%
TGATGGAGAAGGAACGTGAG+AGG + chr4_1:68704246-68704265 None:intergenic 50.0%
! CAATTGCGCGGTGCTTTTCA+AGG - chr4_1:68704278-68704297 Msa0567330:intron 50.0%
ACAGGATGGGGAACGAATGA+AGG - chr4_1:68704801-68704820 Msa0567330:CDS 50.0%
GAGCTGCATTTCTATGAGCC+AGG + chr4_1:68704842-68704861 None:intergenic 50.0%
GAAACTTACACGCAGACCCA+TGG - chr4_1:68704879-68704898 Msa0567330:intron 50.0%
! AACAGAAAGCTGTGCTGCTG+TGG - chr4_1:68705152-68705171 Msa0567330:intron 50.0%
AAAAATGCATCACGCTCGGC+CGG + chr4_1:68705187-68705206 None:intergenic 50.0%
TACTTCTGGTGACATCCGCA+AGG - chr4_1:68705354-68705373 Msa0567330:CDS 50.0%
AATACACCCATCTTGGTGGG+TGG - chr4_1:68705589-68705608 Msa0567330:intron 50.0%
TAACGGTGTATGCCCACAAG+AGG + chr4_1:68705738-68705757 None:intergenic 50.0%
TGTGGGCATACACCGTTATG+AGG - chr4_1:68705740-68705759 Msa0567330:intron 50.0%
GTGGGCATACACCGTTATGA+GGG - chr4_1:68705741-68705760 Msa0567330:intron 50.0%
ACACCGTTATGAGGGAGATG+AGG - chr4_1:68705749-68705768 Msa0567330:CDS 50.0%
GTTGCAACACTCCCAGCAAA+AGG - chr4_1:68705977-68705996 Msa0567330:intron 50.0%
AGTGGTGACAACTAGAGCTG+AGG - chr4_1:68706367-68706386 Msa0567330:intron 50.0%
! TGATTTGCAGCGAATTGCGG+AGG - chr4_1:68706391-68706410 Msa0567330:intron 50.0%
TTGTCAATTGCACGGTCCAG+AGG + chr4_1:68706440-68706459 None:intergenic 50.0%
CATCATGTCCCATCAGTGCA+AGG + chr4_1:68706493-68706512 None:intergenic 50.0%
TCTGTCCAGTAGTCATGGAG+TGG - chr4_1:68706527-68706546 Msa0567330:intron 50.0%
AACAGCCACTCCATGACTAC+TGG + chr4_1:68706535-68706554 None:intergenic 50.0%
GTAGTCATGGAGTGGCTGTT+TGG - chr4_1:68706535-68706554 Msa0567330:intron 50.0%
!! CAGAATTCGGTGACTTGCTG+TGG - chr4_1:68706616-68706635 Msa0567330:intron 50.0%
AACCTGCTCCCTCCCAACAT+TGG - chr4_1:68704146-68704165 Msa0567330:three_prime_UTR 55.0%
GGGTCTGCGTGTAAGTTTCG+CGG + chr4_1:68704878-68704897 None:intergenic 55.0%
! AGCTGTGCTGCTGTGGACAT+TGG - chr4_1:68705159-68705178 Msa0567330:intron 55.0%
GCTGCTGTGGACATTGGATC+CGG - chr4_1:68705165-68705184 Msa0567330:intron 55.0%
GGCTATCCACCCACCAAGAT+GGG + chr4_1:68705598-68705617 None:intergenic 55.0%
TGGCTATCCACCCACCAAGA+TGG + chr4_1:68705599-68705618 None:intergenic 55.0%
! AACGTTGAGCTTCTGGCTGC+AGG - chr4_1:68706202-68706221 Msa0567330:CDS 55.0%
! GAGCTTCTGGCTGCAGGATT+TGG - chr4_1:68706208-68706227 Msa0567330:CDS 55.0%
AGCCAATGTTGGGAGGGAGC+AGG + chr4_1:68704151-68704170 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 68704137 68706980 68704137 ID=Msa0567330;Name=Msa0567330
chr4_1 mRNA 68704137 68706980 68704137 ID=Msa0567330-mRNA-1;Parent=Msa0567330;Name=Msa0567330-mRNA-1;_AED=0.05;_eAED=0.05;_QI=87|1|1|1|0.8|0.66|6|366|315
chr4_1 exon 68704137 68704250 68704137 ID=Msa0567330-mRNA-1:exon:22760;Parent=Msa0567330-mRNA-1
chr4_1 exon 68704348 68704893 68704348 ID=Msa0567330-mRNA-1:exon:22759;Parent=Msa0567330-mRNA-1
chr4_1 exon 68705179 68705391 68705179 ID=Msa0567330-mRNA-1:exon:22758;Parent=Msa0567330-mRNA-1
chr4_1 exon 68705742 68705960 68705742 ID=Msa0567330-mRNA-1:exon:22757;Parent=Msa0567330-mRNA-1
chr4_1 exon 68706167 68706312 68706167 ID=Msa0567330-mRNA-1:exon:22756;Parent=Msa0567330-mRNA-1
chr4_1 exon 68706818 68706980 68706818 ID=Msa0567330-mRNA-1:exon:22755;Parent=Msa0567330-mRNA-1
chr4_1 five_prime_UTR 68706894 68706980 68706894 ID=Msa0567330-mRNA-1:five_prime_utr;Parent=Msa0567330-mRNA-1
chr4_1 CDS 68706818 68706893 68706818 ID=Msa0567330-mRNA-1:cds;Parent=Msa0567330-mRNA-1
chr4_1 CDS 68706167 68706312 68706167 ID=Msa0567330-mRNA-1:cds;Parent=Msa0567330-mRNA-1
chr4_1 CDS 68705742 68705960 68705742 ID=Msa0567330-mRNA-1:cds;Parent=Msa0567330-mRNA-1
chr4_1 CDS 68705179 68705391 68705179 ID=Msa0567330-mRNA-1:cds;Parent=Msa0567330-mRNA-1
chr4_1 CDS 68704600 68704893 68704600 ID=Msa0567330-mRNA-1:cds;Parent=Msa0567330-mRNA-1
chr4_1 three_prime_UTR 68704348 68704599 68704348 ID=Msa0567330-mRNA-1:three_prime_utr;Parent=Msa0567330-mRNA-1
chr4_1 three_prime_UTR 68704137 68704250 68704137 ID=Msa0567330-mRNA-1:three_prime_utr;Parent=Msa0567330-mRNA-1
Gene Sequence

>Msa0567330

ATGGCGACATTGAAGATCCCCTCTCACGTTCCTTCTCCATCAGAAGACAGTGAACAATTGCGCGGTGCTTTTCAAGGATGGGGAACGAATGAAGGCTTGATAATATCGATCCTGGCTCATAGAAATGCAGCTCAGCGTAAGTCGATCCGCGAAACTTACACGCAGACCCATGGAGAAGATCTTCTTAAAGATCTTGACAAAGAACTTTCAAGTGATTTTGAGAAAGCTGTGCTGCTGTGGACATTGGATCCGGCCGAGCGTGATGCATTTTTAGCCAATCAAGCAACTAAAATGTTGACTTCAAACAATTCGATCATCGTGGAAATTGCTTCCACAAGATCTCCACTTGAACTTCTTAAGGCAAAGCAAGCATATCAAGTCCGTTTCAAAAAGTCCCTTGAAGAAGATGTTGCCTATCATACTTCTGGTGACATCCGCAAGCTTTTGGTTCCTCTTGTGGGCATACACCGTTATGAGGGAGATGAGGTGAACATGACATTGGCAAAATCTGAAGCTAAATTGCTTCATGAGAAGATTGCGGATAAGGCTTACAATCATGATGACCTGATCAGGATTGTAACAACAAGGAGTAAAGCGCAATTAAATGCAACTTTGAATCACTATAACAATGAGTTTGGGAATGTAATAGACAAGGATTTGGAAACTGATTCGGATGATGAATATCTGAAATTATTGAGGGCAGCAATTAAGGGCTTGACCTACCCTGAGAAATATTTTGAGGAACTCCTTAGGCTGGCTATAAACAAGATGGGAACCGATGAAAATGCTCTTACTAGAGTGGTGACAACTAGAGCTGAGGTTGATTTGCAGCGAATTGCGGAGGAATACCAGAGAAGAAACAGTGTTCCTCTGGACCGTGCAATTGACAAAGACACTTCTGGAGATTATCAGAAAATTCTCCTTGCACTGATGGGACATGATGAGTAG

Protein sequence

>Msa0567330

MATLKIPSHVPSPSEDSEQLRGAFQGWGTNEGLIISILAHRNAAQRKSIRETYTQTHGEDLLKDLDKELSSDFEKAVLLWTLDPAERDAFLANQATKMLTSNNSIIVEIASTRSPLELLKAKQAYQVRFKKSLEEDVAYHTSGDIRKLLVPLVGIHRYEGDEVNMTLAKSEAKLLHEKIADKAYNHDDLIRIVTTRSKAQLNATLNHYNNEFGNVIDKDLETDSDDEYLKLLRAAIKGLTYPEKYFEELLRLAINKMGTDENALTRVVTTRAEVDLQRIAEEYQRRNSVPLDRAIDKDTSGDYQKILLALMGHDE*