Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0399130 | RHN66131.1 | 79.310 | 58 | 11 | 1 | 76 | 132 | 1 | 58 | 1.44e-18 | 84.3 |
| Msa0399130 | RHN66131.1 | 81.538 | 65 | 12 | 0 | 1 | 65 | 1 | 65 | 1.34e-26 | 104 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0399130 | A0A396IMW8 | 79.310 | 58 | 11 | 1 | 76 | 132 | 1 | 58 | 6.88e-19 | 84.3 |
| Msa0399130 | A0A396IMW8 | 81.538 | 65 | 12 | 0 | 1 | 65 | 1 | 65 | 6.42e-27 | 104 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0399130 | Msa0479340 | 0.804315 | 2.291517e-49 | -8.615850e-47 |
| Msa0399130 | Msa0512750 | 0.806899 | 6.574234e-50 | -8.615850e-47 |
| Msa0399130 | Msa0731180 | 0.812196 | 4.789181e-51 | -8.615850e-47 |
| Msa0399130 | Msa0771580 | 0.804058 | 2.592235e-49 | -8.615850e-47 |
| Msa0399130 | Msa0801780 | 0.806867 | 6.677026e-50 | -8.615850e-47 |
| Msa0399130 | Msa0842650 | 0.802159 | 6.402487e-49 | -8.615850e-47 |
| Msa0399130 | Msa0953120 | 0.802175 | 6.354128e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0399130 | MtrunA17_Chr3g0087451 | 81.538 | 65 | 12 | 0 | 1 | 65 | 1 | 65 | 1.24e-30 | 104 |
| Msa0399130 | MtrunA17_Chr3g0087451 | 79.310 | 58 | 11 | 1 | 76 | 132 | 1 | 58 | 1.33e-22 | 84.3 |
| Msa0399130 | MtrunA17_Chr3g0087441 | 86.154 | 65 | 9 | 0 | 1 | 65 | 1 | 65 | 3.25e-26 | 93.6 |
| Msa0399130 | MtrunA17_Chr3g0087441 | 82.759 | 58 | 9 | 1 | 76 | 132 | 1 | 58 | 8.60e-17 | 69.7 |
| Msa0399130 | MtrunA17_Chr3g0087431 | 82.540 | 63 | 6 | 1 | 76 | 138 | 1 | 58 | 6.71e-17 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 17 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACCATTCTTCAATTGTTT+TGG | 0.272943 | 3_2:-21473402 | Msa0399130:CDS |
| TTATTGTTGACAGGGAAATA+AGG | 0.319814 | 3_2:+21475174 | None:intergenic |
| TTTGGTTTCTCTGAAGTTGA+AGG | 0.378479 | 3_2:+21475234 | None:intergenic |
| GGGAAATAAGAAACTACAAT+TGG | 0.414927 | 3_2:+21473273 | None:intergenic |
| GAGGAATAATTATTGTTGAC+AGG | 0.420855 | 3_2:+21475165 | None:intergenic |
| CGTGAGGGATAATAGTTAAC+GGG | 0.436694 | 3_2:+21473252 | None:intergenic |
| TCAGCGTTCTTCAATTGCCT+TGG | 0.447175 | 3_2:-21475318 | Msa0399130:CDS |
| TGTGAAGATGAGTTTGAAGA+AGG | 0.488100 | 3_2:+21473378 | None:intergenic |
| GCGTGAGGGATAATAGTTAA+CGG | 0.502830 | 3_2:+21473251 | None:intergenic |
| GGACCAAAACAATTGAAGAA+TGG | 0.531350 | 3_2:+21473399 | None:intergenic |
| AGGAATAATTATTGTTGACA+GGG | 0.580535 | 3_2:+21475166 | None:intergenic |
| TTCAGAGAAACCAAAGAGCA+AGG | 0.587633 | 3_2:-21475226 | Msa0399130:CDS |
| ATCGCCTGACTACAAGCGTG+AGG | 0.644812 | 3_2:+21473236 | None:intergenic |
| ATGAGTTTGAAGAGAGACCA+AGG | 0.645432 | 3_2:+21475301 | None:intergenic |
| TGCTCGTGACTACAAGAGTG+AGG | 0.660681 | 3_2:+21475146 | None:intergenic |
| TCGCCTGACTACAAGCGTGA+GGG | 0.661838 | 3_2:+21473237 | None:intergenic |
| GTGAGGGATAATAGTTAACG+GGG | 0.734875 | 3_2:+21473253 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTGATAAAATATGATAATT+TGG | - | chr3_2:21473850-21473869 | Msa0399130:intron | 10.0% |
| !! | TTGATAAAATATGATAATTT+GGG | - | chr3_2:21473851-21473870 | Msa0399130:intron | 10.0% |
| !!! | TTCAATAATTTCTAATTTTA+AGG | + | chr3_2:21474124-21474143 | None:intergenic | 10.0% |
| !! | ATAGAATTATAACAAAATTT+AGG | + | chr3_2:21474964-21474983 | None:intergenic | 10.0% |
| !! | TTTGATAAAATATGATAATT+TGG | - | chr3_2:21473850-21473869 | Msa0399130:intron | 10.0% |
| !! | TTGATAAAATATGATAATTT+GGG | - | chr3_2:21473851-21473870 | Msa0399130:intron | 10.0% |
| !!! | TTCAATAATTTCTAATTTTA+AGG | + | chr3_2:21474124-21474143 | None:intergenic | 10.0% |
| !! | ATAGAATTATAACAAAATTT+AGG | + | chr3_2:21474964-21474983 | None:intergenic | 10.0% |
| !! | TGAGAAAATTTATATGAATA+AGG | + | chr3_2:21473599-21473618 | None:intergenic | 15.0% |
| !!! | TGAATATTTGATTTCATAAT+AGG | - | chr3_2:21473823-21473842 | Msa0399130:intron | 15.0% |
| !!! | GAATATTTGATTTCATAATA+GGG | - | chr3_2:21473824-21473843 | Msa0399130:intron | 15.0% |
| !!! | AATATTTGATTTCATAATAG+GGG | - | chr3_2:21473825-21473844 | Msa0399130:intron | 15.0% |
| !! | TGATAAAATATGATAATTTG+GGG | - | chr3_2:21473852-21473871 | Msa0399130:intron | 15.0% |
| !! | TTCTTTCATATTTATTATTG+TGG | + | chr3_2:21473904-21473923 | None:intergenic | 15.0% |
| !!! | ATAATTTCTAATTTTAAGGT+GGG | + | chr3_2:21474120-21474139 | None:intergenic | 15.0% |
| !!! | AATAATTTCTAATTTTAAGG+TGG | + | chr3_2:21474121-21474140 | None:intergenic | 15.0% |
| !! | TAGTATGATAGTAAAAATTA+TGG | - | chr3_2:21474445-21474464 | Msa0399130:intron | 15.0% |
| !!! | AATTAACCACAATTTTAAAT+AGG | - | chr3_2:21474546-21474565 | Msa0399130:intron | 15.0% |
| !! | AATTATAACAAAATTTAGGA+AGG | + | chr3_2:21474960-21474979 | None:intergenic | 15.0% |
| !! | TGAGAAAATTTATATGAATA+AGG | + | chr3_2:21473599-21473618 | None:intergenic | 15.0% |
| !!! | TGAATATTTGATTTCATAAT+AGG | - | chr3_2:21473823-21473842 | Msa0399130:intron | 15.0% |
| !!! | GAATATTTGATTTCATAATA+GGG | - | chr3_2:21473824-21473843 | Msa0399130:intron | 15.0% |
| !!! | AATATTTGATTTCATAATAG+GGG | - | chr3_2:21473825-21473844 | Msa0399130:intron | 15.0% |
| !! | TGATAAAATATGATAATTTG+GGG | - | chr3_2:21473852-21473871 | Msa0399130:intron | 15.0% |
| !! | TTCTTTCATATTTATTATTG+TGG | + | chr3_2:21473904-21473923 | None:intergenic | 15.0% |
| !!! | ATAATTTCTAATTTTAAGGT+GGG | + | chr3_2:21474120-21474139 | None:intergenic | 15.0% |
| !!! | AATAATTTCTAATTTTAAGG+TGG | + | chr3_2:21474121-21474140 | None:intergenic | 15.0% |
| !! | TAGTATGATAGTAAAAATTA+TGG | - | chr3_2:21474445-21474464 | Msa0399130:intron | 15.0% |
| !!! | AATTAACCACAATTTTAAAT+AGG | - | chr3_2:21474546-21474565 | Msa0399130:intron | 15.0% |
| !! | AATTATAACAAAATTTAGGA+AGG | + | chr3_2:21474960-21474979 | None:intergenic | 15.0% |
| !! | TAATTAGATTTAAGTGTAAC+TGG | + | chr3_2:21473575-21473594 | None:intergenic | 20.0% |
| !!! | ATTTTGAGTGAGATTAAAAA+AGG | + | chr3_2:21473656-21473675 | None:intergenic | 20.0% |
| !!! | TTAGAGTGAGATTTTTTTTA+AGG | + | chr3_2:21473682-21473701 | None:intergenic | 20.0% |
| !! | ATTTAATGAAATCTAGTGAT+GGG | + | chr3_2:21474097-21474116 | None:intergenic | 20.0% |
| !! | AGAAAATCAATCAAATTCAA+AGG | - | chr3_2:21474162-21474181 | Msa0399130:intron | 20.0% |
| !! | GAAAATCAATCAAATTCAAA+GGG | - | chr3_2:21474163-21474182 | Msa0399130:intron | 20.0% |
| !! | CATTGAAAATTGTAAAATTG+TGG | + | chr3_2:21474492-21474511 | None:intergenic | 20.0% |
| !!! | GCAAACTAAATCATTTTTTA+TGG | - | chr3_2:21475142-21475161 | Msa0399130:intron | 20.0% |
| !!! | TTCTGAAAAATCAAAGTTAA+AGG | - | chr3_2:21475262-21475281 | Msa0399130:CDS | 20.0% |
| !! | AAGTTAAAGGAAAAATCAAA+AGG | - | chr3_2:21475275-21475294 | Msa0399130:CDS | 20.0% |
| !! | TAATTAGATTTAAGTGTAAC+TGG | + | chr3_2:21473575-21473594 | None:intergenic | 20.0% |
| !!! | ATTTTGAGTGAGATTAAAAA+AGG | + | chr3_2:21473656-21473675 | None:intergenic | 20.0% |
| !!! | TTAGAGTGAGATTTTTTTTA+AGG | + | chr3_2:21473682-21473701 | None:intergenic | 20.0% |
| !! | ATTTAATGAAATCTAGTGAT+GGG | + | chr3_2:21474097-21474116 | None:intergenic | 20.0% |
| !! | AGAAAATCAATCAAATTCAA+AGG | - | chr3_2:21474162-21474181 | Msa0399130:intron | 20.0% |
| !! | GAAAATCAATCAAATTCAAA+GGG | - | chr3_2:21474163-21474182 | Msa0399130:intron | 20.0% |
| !! | CATTGAAAATTGTAAAATTG+TGG | + | chr3_2:21474492-21474511 | None:intergenic | 20.0% |
| !!! | GCAAACTAAATCATTTTTTA+TGG | - | chr3_2:21475142-21475161 | Msa0399130:intron | 20.0% |
| !!! | TTCTGAAAAATCAAAGTTAA+AGG | - | chr3_2:21475262-21475281 | Msa0399130:CDS | 20.0% |
| !! | AAGTTAAAGGAAAAATCAAA+AGG | - | chr3_2:21475275-21475294 | Msa0399130:CDS | 20.0% |
| ! | AGGAATAATTATTGTTGACA+GGG | + | chr3_2:21473412-21473431 | None:intergenic | 25.0% |
| ! | AATGTCTGAAAATTGTATCT+TGG | - | chr3_2:21473471-21473490 | Msa0399130:intron | 25.0% |
| !! | TTTATCAATGAGAGTACAAA+TGG | + | chr3_2:21473519-21473538 | None:intergenic | 25.0% |
| ! | AATATTCAAAAACAACCCTT+TGG | + | chr3_2:21473811-21473830 | None:intergenic | 25.0% |
| ! | GATTTAATGAAATCTAGTGA+TGG | + | chr3_2:21474098-21474117 | None:intergenic | 25.0% |
| ! | AAACTTTACTAATCCTTCAT+AGG | - | chr3_2:21474231-21474250 | Msa0399130:intron | 25.0% |
| ! | AACTTTACTAATCCTTCATA+GGG | - | chr3_2:21474232-21474251 | Msa0399130:intron | 25.0% |
| ! | TCATTCTAATGATTTAGCAT+TGG | + | chr3_2:21474421-21474440 | None:intergenic | 25.0% |
| !! | TTAACTTAACTCAGTTGATA+TGG | + | chr3_2:21474528-21474547 | None:intergenic | 25.0% |
| !! | TAACCACAATTTTAAATAGG+TGG | - | chr3_2:21474549-21474568 | Msa0399130:intron | 25.0% |
| ! | CTTACATGAAGAAATAACTT+AGG | - | chr3_2:21474713-21474732 | Msa0399130:intron | 25.0% |
| !! | TGAATTTTCAAAGTTCTATG+TGG | - | chr3_2:21474886-21474905 | Msa0399130:intron | 25.0% |
| !! | AATTCAGGTTATTGATATCT+TGG | + | chr3_2:21475019-21475038 | None:intergenic | 25.0% |
| !!! | TAAATGATTGGTTTGAATTC+AGG | + | chr3_2:21475034-21475053 | None:intergenic | 25.0% |
| ! | AGGAATAATTATTGTTGACA+GGG | + | chr3_2:21473412-21473431 | None:intergenic | 25.0% |
| ! | AATGTCTGAAAATTGTATCT+TGG | - | chr3_2:21473471-21473490 | Msa0399130:intron | 25.0% |
| !! | TTTATCAATGAGAGTACAAA+TGG | + | chr3_2:21473519-21473538 | None:intergenic | 25.0% |
| ! | AATATTCAAAAACAACCCTT+TGG | + | chr3_2:21473811-21473830 | None:intergenic | 25.0% |
| ! | GATTTAATGAAATCTAGTGA+TGG | + | chr3_2:21474098-21474117 | None:intergenic | 25.0% |
| ! | AAACTTTACTAATCCTTCAT+AGG | - | chr3_2:21474231-21474250 | Msa0399130:intron | 25.0% |
| ! | AACTTTACTAATCCTTCATA+GGG | - | chr3_2:21474232-21474251 | Msa0399130:intron | 25.0% |
| ! | TCATTCTAATGATTTAGCAT+TGG | + | chr3_2:21474421-21474440 | None:intergenic | 25.0% |
| !! | TTAACTTAACTCAGTTGATA+TGG | + | chr3_2:21474528-21474547 | None:intergenic | 25.0% |
| !! | TAACCACAATTTTAAATAGG+TGG | - | chr3_2:21474549-21474568 | Msa0399130:intron | 25.0% |
| ! | CTTACATGAAGAAATAACTT+AGG | - | chr3_2:21474713-21474732 | Msa0399130:intron | 25.0% |
| !! | TGAATTTTCAAAGTTCTATG+TGG | - | chr3_2:21474886-21474905 | Msa0399130:intron | 25.0% |
| !! | AATTCAGGTTATTGATATCT+TGG | + | chr3_2:21475019-21475038 | None:intergenic | 25.0% |
| !!! | TAAATGATTGGTTTGAATTC+AGG | + | chr3_2:21475034-21475053 | None:intergenic | 25.0% |
| AAAGAGCAAGGAAAAATCAA+CGG | - | chr3_2:21473361-21473380 | Msa0399130:CDS | 30.0% | |
| TTATTGTTGACAGGGAAATA+AGG | + | chr3_2:21473404-21473423 | None:intergenic | 30.0% | |
| GAGGAATAATTATTGTTGAC+AGG | + | chr3_2:21473413-21473432 | None:intergenic | 30.0% | |
| TAAGTGTAACTGGATCTTTA+TGG | + | chr3_2:21473565-21473584 | None:intergenic | 30.0% | |
| AGTTGTTCCATTACAAGAAT+AGG | - | chr3_2:21473766-21473785 | Msa0399130:intron | 30.0% | |
| ! | TGTGGTTTATGATGATGAAT+CGG | + | chr3_2:21473886-21473905 | None:intergenic | 30.0% |
| !!! | TGTGTTGTTTTCTTTTAGAG+AGG | + | chr3_2:21474012-21474031 | None:intergenic | 30.0% |
| TTTATCTGTCTTTGTAGCAA+AGG | + | chr3_2:21474068-21474087 | None:intergenic | 30.0% | |
| ATAGAAAGCAAGAACAACAA+AGG | - | chr3_2:21474272-21474291 | Msa0399130:intron | 30.0% | |
| TAGAAAGCAAGAACAACAAA+GGG | - | chr3_2:21474273-21474292 | Msa0399130:intron | 30.0% | |
| ! | TTCTAATGATTTAGCATTGG+TGG | + | chr3_2:21474418-21474437 | None:intergenic | 30.0% |
| ATGAACAAGCACGAATTAAA+TGG | + | chr3_2:21474693-21474712 | None:intergenic | 30.0% | |
| TGACTTGACTATTCTAGTAT+GGG | + | chr3_2:21474751-21474770 | None:intergenic | 30.0% | |
| ATGACTTGACTATTCTAGTA+TGG | + | chr3_2:21474752-21474771 | None:intergenic | 30.0% | |
| ! | CCATGTATGCATATATTTTG+TGG | + | chr3_2:21474865-21474884 | None:intergenic | 30.0% |
| CCACAAAATATATGCATACA+TGG | - | chr3_2:21474862-21474881 | Msa0399130:intron | 30.0% | |
| ATGTGCAAAGCTTAAATGAT+TGG | + | chr3_2:21475046-21475065 | None:intergenic | 30.0% | |
| GTGCAATGAAATGAAGATTT+AGG | + | chr3_2:21475107-21475126 | None:intergenic | 30.0% | |
| ! | TCACCATTCTTCAATTGTTT+TGG | - | chr3_2:21475173-21475192 | Msa0399130:CDS | 30.0% |
| GGGAAATAAGAAACTACAAT+TGG | + | chr3_2:21475305-21475324 | None:intergenic | 30.0% | |
| AAAGAGCAAGGAAAAATCAA+CGG | - | chr3_2:21473361-21473380 | Msa0399130:CDS | 30.0% | |
| TTATTGTTGACAGGGAAATA+AGG | + | chr3_2:21473404-21473423 | None:intergenic | 30.0% | |
| GAGGAATAATTATTGTTGAC+AGG | + | chr3_2:21473413-21473432 | None:intergenic | 30.0% | |
| TAAGTGTAACTGGATCTTTA+TGG | + | chr3_2:21473565-21473584 | None:intergenic | 30.0% | |
| AGTTGTTCCATTACAAGAAT+AGG | - | chr3_2:21473766-21473785 | Msa0399130:intron | 30.0% | |
| ! | TGTGGTTTATGATGATGAAT+CGG | + | chr3_2:21473886-21473905 | None:intergenic | 30.0% |
| !!! | TGTGTTGTTTTCTTTTAGAG+AGG | + | chr3_2:21474012-21474031 | None:intergenic | 30.0% |
| TTTATCTGTCTTTGTAGCAA+AGG | + | chr3_2:21474068-21474087 | None:intergenic | 30.0% | |
| ATAGAAAGCAAGAACAACAA+AGG | - | chr3_2:21474272-21474291 | Msa0399130:intron | 30.0% | |
| TAGAAAGCAAGAACAACAAA+GGG | - | chr3_2:21474273-21474292 | Msa0399130:intron | 30.0% | |
| ! | TTCTAATGATTTAGCATTGG+TGG | + | chr3_2:21474418-21474437 | None:intergenic | 30.0% |
| ATGAACAAGCACGAATTAAA+TGG | + | chr3_2:21474693-21474712 | None:intergenic | 30.0% | |
| TGACTTGACTATTCTAGTAT+GGG | + | chr3_2:21474751-21474770 | None:intergenic | 30.0% | |
| ATGACTTGACTATTCTAGTA+TGG | + | chr3_2:21474752-21474771 | None:intergenic | 30.0% | |
| ! | CCATGTATGCATATATTTTG+TGG | + | chr3_2:21474865-21474884 | None:intergenic | 30.0% |
| CCACAAAATATATGCATACA+TGG | - | chr3_2:21474862-21474881 | Msa0399130:intron | 30.0% | |
| ATGTGCAAAGCTTAAATGAT+TGG | + | chr3_2:21475046-21475065 | None:intergenic | 30.0% | |
| GTGCAATGAAATGAAGATTT+AGG | + | chr3_2:21475107-21475126 | None:intergenic | 30.0% | |
| ! | TCACCATTCTTCAATTGTTT+TGG | - | chr3_2:21475173-21475192 | Msa0399130:CDS | 30.0% |
| GGGAAATAAGAAACTACAAT+TGG | + | chr3_2:21475305-21475324 | None:intergenic | 30.0% | |
| !! | TTTGGTTTCTCTGAAGTTGA+AGG | + | chr3_2:21473344-21473363 | None:intergenic | 35.0% |
| !! | GTTGATTTTTCCTTGCTCTT+TGG | + | chr3_2:21473362-21473381 | None:intergenic | 35.0% |
| AAGAGCAAGGAAAAATCAAC+GGG | - | chr3_2:21473362-21473381 | Msa0399130:CDS | 35.0% | |
| CCATTGATCTTTATGAAGAG+AGG | + | chr3_2:21473711-21473730 | None:intergenic | 35.0% | |
| CCTCTCTTCATAAAGATCAA+TGG | - | chr3_2:21473708-21473727 | Msa0399130:intron | 35.0% | |
| ACACTCTCCTATTCTTGTAA+TGG | + | chr3_2:21473776-21473795 | None:intergenic | 35.0% | |
| ATTACAAGAATAGGAGAGTG+TGG | - | chr3_2:21473775-21473794 | Msa0399130:intron | 35.0% | |
| TGTGGTGATTATAGACCAAA+GGG | - | chr3_2:21473793-21473812 | Msa0399130:intron | 35.0% | |
| GGTTATGTTTCAGCTTACAA+GGG | + | chr3_2:21473991-21474010 | None:intergenic | 35.0% | |
| AGGTTATGTTTCAGCTTACA+AGG | + | chr3_2:21473992-21474011 | None:intergenic | 35.0% | |
| ATCAAATTCAAAGGGTTCGT+TGG | - | chr3_2:21474171-21474190 | Msa0399130:intron | 35.0% | |
| TACTAATCCTTCATAGGGAA+TGG | - | chr3_2:21474237-21474256 | Msa0399130:intron | 35.0% | |
| TTTGCCATTGCCATTAAGAT+CGG | - | chr3_2:21474310-21474329 | Msa0399130:intron | 35.0% | |
| AAAACCGATCTTAATGGCAA+TGG | + | chr3_2:21474317-21474336 | None:intergenic | 35.0% | |
| GCAGAAAATGAAGACGATAA+GGG | + | chr3_2:21474384-21474403 | None:intergenic | 35.0% | |
| ! | CCTCCACCTATTTAAAATTG+TGG | + | chr3_2:21474555-21474574 | None:intergenic | 35.0% |
| ! | CCACAATTTTAAATAGGTGG+AGG | - | chr3_2:21474552-21474571 | Msa0399130:intron | 35.0% |
| ! | CATATATTTTGTGGCTGCTT+TGG | + | chr3_2:21474856-21474875 | None:intergenic | 35.0% |
| TGTGACTTGAAATTGCAGTT+AGG | + | chr3_2:21475084-21475103 | None:intergenic | 35.0% | |
| AGTTTGCACTATGTAGCTAA+AGG | + | chr3_2:21475129-21475148 | None:intergenic | 35.0% | |
| GGACCAAAACAATTGAAGAA+TGG | + | chr3_2:21475179-21475198 | None:intergenic | 35.0% | |
| TGTGAAGATGAGTTTGAAGA+AGG | + | chr3_2:21475200-21475219 | None:intergenic | 35.0% | |
| !! | TTTGGTTTCTCTGAAGTTGA+AGG | + | chr3_2:21473344-21473363 | None:intergenic | 35.0% |
| !! | GTTGATTTTTCCTTGCTCTT+TGG | + | chr3_2:21473362-21473381 | None:intergenic | 35.0% |
| AAGAGCAAGGAAAAATCAAC+GGG | - | chr3_2:21473362-21473381 | Msa0399130:CDS | 35.0% | |
| CCATTGATCTTTATGAAGAG+AGG | + | chr3_2:21473711-21473730 | None:intergenic | 35.0% | |
| CCTCTCTTCATAAAGATCAA+TGG | - | chr3_2:21473708-21473727 | Msa0399130:intron | 35.0% | |
| ACACTCTCCTATTCTTGTAA+TGG | + | chr3_2:21473776-21473795 | None:intergenic | 35.0% | |
| ATTACAAGAATAGGAGAGTG+TGG | - | chr3_2:21473775-21473794 | Msa0399130:intron | 35.0% | |
| TGTGGTGATTATAGACCAAA+GGG | - | chr3_2:21473793-21473812 | Msa0399130:intron | 35.0% | |
| GGTTATGTTTCAGCTTACAA+GGG | + | chr3_2:21473991-21474010 | None:intergenic | 35.0% | |
| AGGTTATGTTTCAGCTTACA+AGG | + | chr3_2:21473992-21474011 | None:intergenic | 35.0% | |
| ATCAAATTCAAAGGGTTCGT+TGG | - | chr3_2:21474171-21474190 | Msa0399130:intron | 35.0% | |
| TACTAATCCTTCATAGGGAA+TGG | - | chr3_2:21474237-21474256 | Msa0399130:intron | 35.0% | |
| TTTGCCATTGCCATTAAGAT+CGG | - | chr3_2:21474310-21474329 | Msa0399130:intron | 35.0% | |
| AAAACCGATCTTAATGGCAA+TGG | + | chr3_2:21474317-21474336 | None:intergenic | 35.0% | |
| GCAGAAAATGAAGACGATAA+GGG | + | chr3_2:21474384-21474403 | None:intergenic | 35.0% | |
| ! | CCTCCACCTATTTAAAATTG+TGG | + | chr3_2:21474555-21474574 | None:intergenic | 35.0% |
| ! | CCACAATTTTAAATAGGTGG+AGG | - | chr3_2:21474552-21474571 | Msa0399130:intron | 35.0% |
| ! | CATATATTTTGTGGCTGCTT+TGG | + | chr3_2:21474856-21474875 | None:intergenic | 35.0% |
| TGTGACTTGAAATTGCAGTT+AGG | + | chr3_2:21475084-21475103 | None:intergenic | 35.0% | |
| AGTTTGCACTATGTAGCTAA+AGG | + | chr3_2:21475129-21475148 | None:intergenic | 35.0% | |
| GGACCAAAACAATTGAAGAA+TGG | + | chr3_2:21475179-21475198 | None:intergenic | 35.0% | |
| TGTGAAGATGAGTTTGAAGA+AGG | + | chr3_2:21475200-21475219 | None:intergenic | 35.0% | |
| ATGAGTTTGAAGAGAGACCA+AGG | + | chr3_2:21473277-21473296 | None:intergenic | 40.0% | |
| TTCAGAGAAACCAAAGAGCA+AGG | - | chr3_2:21473349-21473368 | Msa0399130:CDS | 40.0% | |
| GTGTGGTGATTATAGACCAA+AGG | - | chr3_2:21473792-21473811 | Msa0399130:intron | 40.0% | |
| ! | CTTTTCTCCATTCCCTATGA+AGG | + | chr3_2:21474247-21474266 | None:intergenic | 40.0% |
| ! | AGGGGATCTTTTACAAGCAT+TGG | + | chr3_2:21474356-21474375 | None:intergenic | 40.0% |
| AAGACGATAAGGGATTGAAG+GGG | + | chr3_2:21474374-21474393 | None:intergenic | 40.0% | |
| GAAGACGATAAGGGATTGAA+GGG | + | chr3_2:21474375-21474394 | None:intergenic | 40.0% | |
| TGAAGACGATAAGGGATTGA+AGG | + | chr3_2:21474376-21474395 | None:intergenic | 40.0% | |
| GGCAGAAAATGAAGACGATA+AGG | + | chr3_2:21474385-21474404 | None:intergenic | 40.0% | |
| CAAGCACGAATTAAATGGAG+AGG | + | chr3_2:21474688-21474707 | None:intergenic | 40.0% | |
| TTGACTATTCTAGTATGGGC+AGG | + | chr3_2:21474747-21474766 | None:intergenic | 40.0% | |
| ! | CGAGCAAGGTGAACATTTTT+GGG | + | chr3_2:21474913-21474932 | None:intergenic | 40.0% |
| GTGAGGGATAATAGTTAACG+GGG | + | chr3_2:21475325-21475344 | None:intergenic | 40.0% | |
| CGTGAGGGATAATAGTTAAC+GGG | + | chr3_2:21475326-21475345 | None:intergenic | 40.0% | |
| GCGTGAGGGATAATAGTTAA+CGG | + | chr3_2:21475327-21475346 | None:intergenic | 40.0% | |
| ATGAGTTTGAAGAGAGACCA+AGG | + | chr3_2:21473277-21473296 | None:intergenic | 40.0% | |
| TTCAGAGAAACCAAAGAGCA+AGG | - | chr3_2:21473349-21473368 | Msa0399130:CDS | 40.0% | |
| GTGTGGTGATTATAGACCAA+AGG | - | chr3_2:21473792-21473811 | Msa0399130:intron | 40.0% | |
| ! | CTTTTCTCCATTCCCTATGA+AGG | + | chr3_2:21474247-21474266 | None:intergenic | 40.0% |
| ! | AGGGGATCTTTTACAAGCAT+TGG | + | chr3_2:21474356-21474375 | None:intergenic | 40.0% |
| AAGACGATAAGGGATTGAAG+GGG | + | chr3_2:21474374-21474393 | None:intergenic | 40.0% | |
| GAAGACGATAAGGGATTGAA+GGG | + | chr3_2:21474375-21474394 | None:intergenic | 40.0% | |
| TGAAGACGATAAGGGATTGA+AGG | + | chr3_2:21474376-21474395 | None:intergenic | 40.0% | |
| GGCAGAAAATGAAGACGATA+AGG | + | chr3_2:21474385-21474404 | None:intergenic | 40.0% | |
| CAAGCACGAATTAAATGGAG+AGG | + | chr3_2:21474688-21474707 | None:intergenic | 40.0% | |
| TTGACTATTCTAGTATGGGC+AGG | + | chr3_2:21474747-21474766 | None:intergenic | 40.0% | |
| ! | CGAGCAAGGTGAACATTTTT+GGG | + | chr3_2:21474913-21474932 | None:intergenic | 40.0% |
| GTGAGGGATAATAGTTAACG+GGG | + | chr3_2:21475325-21475344 | None:intergenic | 40.0% | |
| CGTGAGGGATAATAGTTAAC+GGG | + | chr3_2:21475326-21475345 | None:intergenic | 40.0% | |
| GCGTGAGGGATAATAGTTAA+CGG | + | chr3_2:21475327-21475346 | None:intergenic | 40.0% | |
| TCAGCGTTCTTCAATTGCCT+TGG | - | chr3_2:21473257-21473276 | Msa0399130:CDS | 45.0% | |
| CGACGGAAAACCGATCTTAA+TGG | + | chr3_2:21474323-21474342 | None:intergenic | 45.0% | |
| !! | AGCATTGGTGGTAGAGATTG+CGG | + | chr3_2:21474406-21474425 | None:intergenic | 45.0% |
| ! | GCGAGCAAGGTGAACATTTT+TGG | + | chr3_2:21474914-21474933 | None:intergenic | 45.0% |
| TCAGCGTTCTTCAATTGCCT+TGG | - | chr3_2:21473257-21473276 | Msa0399130:CDS | 45.0% | |
| CGACGGAAAACCGATCTTAA+TGG | + | chr3_2:21474323-21474342 | None:intergenic | 45.0% | |
| !! | AGCATTGGTGGTAGAGATTG+CGG | + | chr3_2:21474406-21474425 | None:intergenic | 45.0% |
| ! | GCGAGCAAGGTGAACATTTT+TGG | + | chr3_2:21474914-21474933 | None:intergenic | 45.0% |
| TGCTCGTGACTACAAGAGTG+AGG | + | chr3_2:21473432-21473451 | None:intergenic | 50.0% | |
| !! | GGATCTTTATGGAGTGTCGC+TGG | + | chr3_2:21473554-21473573 | None:intergenic | 50.0% |
| !! | ATCGGTTTTCCGTCGTTGTG+AGG | - | chr3_2:21474328-21474347 | Msa0399130:intron | 50.0% |
| CACCTTGCTCGCTAAGCAAA+TGG | - | chr3_2:21474922-21474941 | Msa0399130:intron | 50.0% | |
| CTCCATTTGCTTAGCGAGCA+AGG | + | chr3_2:21474927-21474946 | None:intergenic | 50.0% | |
| TGCTCGTGACTACAAGAGTG+AGG | + | chr3_2:21473432-21473451 | None:intergenic | 50.0% | |
| !! | GGATCTTTATGGAGTGTCGC+TGG | + | chr3_2:21473554-21473573 | None:intergenic | 50.0% |
| !! | ATCGGTTTTCCGTCGTTGTG+AGG | - | chr3_2:21474328-21474347 | Msa0399130:intron | 50.0% |
| CACCTTGCTCGCTAAGCAAA+TGG | - | chr3_2:21474922-21474941 | Msa0399130:intron | 50.0% | |
| CTCCATTTGCTTAGCGAGCA+AGG | + | chr3_2:21474927-21474946 | None:intergenic | 50.0% | |
| !! | GCATTGGCTCCTCACAACGA+CGG | + | chr3_2:21474340-21474359 | None:intergenic | 55.0% |
| !! | GCATTGGCTCCTCACAACGA+CGG | + | chr3_2:21474340-21474359 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 21473245 | 21475352 | 21473245 | ID=Msa0399130;Name=Msa0399130 |
| chr3_2 | mRNA | 21473245 | 21475352 | 21473245 | ID=Msa0399130-mRNA-1;Parent=Msa0399130;Name=Msa0399130-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|0|0|1|0|0|2|0|138 |
| chr3_2 | exon | 21475156 | 21475352 | 21475156 | ID=Msa0399130-mRNA-1:exon:4693;Parent=Msa0399130-mRNA-1 |
| chr3_2 | exon | 21473245 | 21473464 | 21473245 | ID=Msa0399130-mRNA-1:exon:4692;Parent=Msa0399130-mRNA-1 |
| chr3_2 | CDS | 21475156 | 21475352 | 21475156 | ID=Msa0399130-mRNA-1:cds;Parent=Msa0399130-mRNA-1 |
| chr3_2 | CDS | 21473245 | 21473464 | 21473245 | ID=Msa0399130-mRNA-1:cds;Parent=Msa0399130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
