AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0512750


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0512750 MtrunA17_Chr3g0120151 97.479 238 6 0 1 238 1 238 3.29e-175 481
Msa0512750 MtrunA17_Chr3g0136801 43.299 97 55 0 35 131 3 99 4.63e-23 89.7
Msa0512750 MtrunA17_Chr6g0460501 40.206 97 58 0 35 131 78 174 6.64e-20 84.3
Msa0512750 MtrunA17_Chr1g0203511 38.542 96 59 0 35 130 108 203 6.18e-17 77.4
Msa0512750 MtrunA17_Chr6g0470661 32.857 140 86 3 36 171 74 209 1.70e-16 75.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0512750 AT4G14965.1 72.458 236 59 1 9 238 10 245 1.96e-126 358
Msa0512750 AT4G14965.2 68.696 115 30 1 9 117 10 124 1.53e-48 159
Msa0512750 AT2G24940.1 45.361 97 53 0 35 131 3 99 1.21e-22 89.0
Msa0512750 AT3G48890.1 39.583 96 58 0 35 130 71 166 8.37e-19 82.4
Msa0512750 AT5G52240.2 40.000 95 57 0 36 130 76 170 4.07e-18 79.3
Msa0512750 AT5G52240.1 39.583 96 58 0 35 130 75 170 6.57e-18 79.7

Find 80 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATATTGAGTCGGTATTTC+TGG 0.134405 3_4:+62673590 Msa0512750:three_prime_UTR
CCAATCCTTATAGGAATTCT+TGG 0.265933 3_4:+62670757 Msa0512750:CDS
GCTTCTCGCGCTTTCTTCTC+TGG 0.283915 3_4:+62671210 Msa0512750:CDS
CCAGGGTTGCCAATCCTTAT+AGG 0.305920 3_4:+62670748 Msa0512750:CDS
ACTAAGGGAAAATCACATTA+TGG 0.334979 3_4:+62671032 Msa0512750:CDS
ATCAGGATTCTAATACAAAT+AGG 0.338141 3_4:+62673447 Msa0512750:exon
AACCTCAATGCAGTTCAAAA+TGG 0.344961 3_4:+62672951 Msa0512750:CDS
AACAGATGCAAAGTTTAATC+AGG 0.347307 3_4:+62673430 Msa0512750:exon
AAAAGAGCAAAACCGGTAAT+AGG 0.364781 3_4:-62670451 None:intergenic
GGAGGTTATCATCACTTTGC+TGG 0.376414 3_4:+62671062 Msa0512750:CDS
TTGTTCAATGGAACTGATCC+AGG 0.379913 3_4:+62670730 Msa0512750:CDS
TGCTTTGAAGAGTCTCAGTT+AGG 0.386400 3_4:+62673364 Msa0512750:CDS
GTTAGGGCAACCTGGGTTAG+AGG 0.389138 3_4:+62673381 Msa0512750:CDS
CCCACCCAAGAATTCCTATA+AGG 0.391806 3_4:-62670762 None:intergenic
CTAGCAACGTCTCCTATTAC+CGG 0.410807 3_4:+62670439 Msa0512750:CDS
ACAACGCTTACTCATCTTCC+CGG 0.429683 3_4:-62673338 None:intergenic
TTTAATGAAGCTGGTAATTG+AGG 0.431334 3_4:+62673526 Msa0512750:three_prime_UTR
CAATCCTTATAGGAATTCTT+GGG 0.434357 3_4:+62670758 Msa0512750:CDS
GTCTGTGTTTGATGTAACTA+AGG 0.435997 3_4:+62671016 Msa0512750:CDS
ATCCTACAAAATATTTGAAA+GGG 0.443636 3_4:+62672864 Msa0512750:CDS
GAAGAGCTTGCATTGTTCAA+TGG 0.446040 3_4:+62670718 Msa0512750:CDS
ATACCTCACCGCCCTCATCT+TGG 0.447566 3_4:-62672976 None:intergenic
TTCTTCTCTGGAAATTTCAC+AGG 0.449479 3_4:+62671222 Msa0512750:CDS
GAGTCTCAGTTAGGGCAACC+TGG 0.454818 3_4:+62673373 Msa0512750:CDS
AAGGACGAAAAGAGCAAAAC+CGG 0.461374 3_4:-62670458 None:intergenic
GCTACCCTAGGTTGGTTAAG+AGG 0.467216 3_4:+62673296 Msa0512750:CDS
CCACTAGAAATTGCTTTGAC+CGG 0.478742 3_4:+62673319 Msa0512750:CDS
AGAAGAGTGCCTCCGGTGCT+TGG 0.494069 3_4:+62673647 Msa0512750:three_prime_UTR
CCTATAAGGATTGGCAACCC+TGG 0.496548 3_4:-62670748 None:intergenic
AATCCTACAAAATATTTGAA+AGG 0.498002 3_4:+62672863 Msa0512750:CDS
AGGCCTGTTGGCAAGTTAGT+TGG 0.503207 3_4:+62672818 Msa0512750:intron
CCTGTGAAGTGATGGAAAAT+CGG 0.503383 3_4:-62670498 None:intergenic
CCAAGAATTCCTATAAGGAT+TGG 0.505658 3_4:-62670757 None:intergenic
CACTAGAAATTGCTTTGACC+GGG 0.507680 3_4:+62673320 Msa0512750:CDS
CGACCAACTAACTTGCCAAC+AGG 0.510685 3_4:-62672821 None:intergenic
GGAGAAGAAGAGCAAGGAAA+AGG 0.512294 3_4:-62670477 None:intergenic
GGAAAATCACATTATGGTCC+AGG 0.518452 3_4:+62671038 Msa0512750:CDS
AAGTGATGATAACCTCCTCC+TGG 0.519496 3_4:-62671056 None:intergenic
GCTTTGAAGAGTCTCAGTTA+GGG 0.527825 3_4:+62673365 Msa0512750:CDS
CTTTACTTATGTAGGCCTGT+TGG 0.531888 3_4:+62672806 Msa0512750:intron
TTCAAAATGGAGCCAAGATG+AGG 0.538293 3_4:+62672964 Msa0512750:CDS
GATCAGGTATGGTGTGATGT+TGG 0.545254 3_4:+62673274 Msa0512750:intron
TCACATTATGGTCCAGGAGG+AGG 0.548964 3_4:+62671044 Msa0512750:CDS
TTTGAAAGGGGTCGAAGCTA+AGG 0.554491 3_4:+62672877 Msa0512750:CDS
GTTATCATCACTTTGCTGGA+AGG 0.556971 3_4:+62671066 Msa0512750:CDS
TGATGTTGGCTACCCTAGGT+TGG 0.557940 3_4:+62673288 Msa0512750:CDS
AAAAGTGACCTGTGAAGTGA+TGG 0.571043 3_4:-62670506 None:intergenic
TCTGTGTTTGATGTAACTAA+GGG 0.574594 3_4:+62671017 Msa0512750:CDS
GATTTGTAGAAGAGTGCCTC+CGG 0.577250 3_4:+62673640 Msa0512750:three_prime_UTR
TACGATCCTCACACAGAACA+AGG 0.577912 3_4:+62670399 Msa0512750:five_prime_UTR
CAAGAGTGTAGTTGACTGGA+GGG 0.581429 3_4:+62672294 Msa0512750:CDS
GGTGTGATGTTGGCTACCCT+AGG 0.583244 3_4:+62673284 Msa0512750:CDS
AGTCTCAGTTAGGGCAACCT+GGG 0.583949 3_4:+62673374 Msa0512750:CDS
AGTGGCCTCTTAACCAACCT+AGG 0.589308 3_4:-62673301 None:intergenic
AGGTCAAGAGTGTAGTTGAC+TGG 0.590092 3_4:+62672290 Msa0512750:intron
CCGGTCAAAGCAATTTCTAG+TGG 0.593019 3_4:-62673319 None:intergenic
CCTGGGTTAGAGGTATATGA+AGG 0.601402 3_4:+62673391 Msa0512750:CDS
TCAAAATGGAGCCAAGATGA+GGG 0.601857 3_4:+62672965 Msa0512750:CDS
GTCGAAGCTAAGGCGGCAAG+AGG 0.606309 3_4:+62672887 Msa0512750:CDS
ATCATTCTTTACATCACGTG+TGG 0.608177 3_4:-62673620 None:intergenic
TCCTACAAAATATTTGAAAG+GGG 0.614400 3_4:+62672865 Msa0512750:CDS
TGTGAACGAATTCCAAGCAC+CGG 0.614479 3_4:-62673659 None:intergenic
AGAAAAGCAGAAGATTGAAG+AGG 0.616982 3_4:+62672922 Msa0512750:CDS
GTGGCCTCTTAACCAACCTA+GGG 0.621270 3_4:-62673300 None:intergenic
CCTTCATATACCTCTAACCC+AGG 0.622425 3_4:-62673391 None:intergenic
TCAAGAGTGTAGTTGACTGG+AGG 0.626751 3_4:+62672293 Msa0512750:CDS
AATATCACTTCATATTGAGT+CGG 0.626949 3_4:+62673581 Msa0512750:three_prime_UTR
GTCGATACTACGATAGCCGA+GGG 0.630099 3_4:+62672840 Msa0512750:CDS
TCATCGCCTTGTTCTGTGTG+AGG 0.642781 3_4:-62670405 None:intergenic
TGTTCAATGGAACTGATCCA+GGG 0.648587 3_4:+62670731 Msa0512750:CDS
GGTCGATACTACGATAGCCG+AGG 0.654868 3_4:+62672839 Msa0512750:CDS
GAAAGGGGTCGAAGCTAAGG+CGG 0.668082 3_4:+62672880 Msa0512750:CDS
AAGAGTGTAGTTGACTGGAG+GGG 0.668565 3_4:+62672295 Msa0512750:CDS
GAGCCAAGATGAGGGCGGTG+AGG 0.675361 3_4:+62672973 Msa0512750:CDS
AAAATCGGAGAAGAAGAGCA+AGG 0.676332 3_4:-62670483 None:intergenic
GGACTTACTGACTCATTGCG+CGG 0.688665 3_4:+62672121 Msa0512750:CDS
AAATCACATTATGGTCCAGG+AGG 0.693984 3_4:+62671041 Msa0512750:CDS
GAACGAATTCCAAGCACCGG+AGG 0.699973 3_4:-62673656 None:intergenic
AAATGGAGCCAAGATGAGGG+CGG 0.711633 3_4:+62672968 Msa0512750:CDS
GCGCGGACTGTCTAGCACTG+AGG 0.717644 3_4:+62672138 Msa0512750:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAGCATAAAATTTAAATTA+TGG + chr3_4:62670557-62670576 Msa0512750:intron 10.0%
!! TAGCATAAAATTTAAATTAT+GGG + chr3_4:62670558-62670577 Msa0512750:intron 10.0%
!!! TTTGATTGTTTTTTTTTTAT+AGG + chr3_4:62670994-62671013 Msa0512750:intron 10.0%
!! AAATTAAAGTTATAAATTCA+AGG - chr3_4:62672202-62672221 None:intergenic 10.0%
!!! TATTTTGAATATGTATATTA+AGG + chr3_4:62673498-62673517 Msa0512750:three_prime_UTR 10.0%
!! AGCATAAAATTTAAATTATG+GGG + chr3_4:62670559-62670578 Msa0512750:intron 15.0%
!!! ATTTAAAACATTAAGATGAT+GGG - chr3_4:62671507-62671526 None:intergenic 15.0%
!!! AATTTAAAACATTAAGATGA+TGG - chr3_4:62671508-62671527 None:intergenic 15.0%
!!! ATGCTTTAAAATATAAAAAC+AGG + chr3_4:62671853-62671872 Msa0512750:intron 15.0%
!! AAATGTTATAATATACCATA+TGG + chr3_4:62671984-62672003 Msa0512750:intron 15.0%
!!! AGGATTTTTTATTTTTTTTG+AGG + chr3_4:62673467-62673486 Msa0512750:three_prime_UTR 15.0%
!! ACTAAATGAAAGCAATATAT+GGG + chr3_4:62671579-62671598 Msa0512750:intron 20.0%
!! TGATATACAAAAACAACTAA+AGG - chr3_4:62671721-62671740 None:intergenic 20.0%
!!! TTACATTTTAACAACCTTAA+AGG + chr3_4:62671756-62671775 Msa0512750:intron 20.0%
!!! GGTTAATCTAATCTTATTTT+TGG - chr3_4:62671903-62671922 None:intergenic 20.0%
!! AGTACATATTATATTGTTCA+AGG - chr3_4:62672061-62672080 None:intergenic 20.0%
!! TTAATTAACCTGAATTAATC+TGG + chr3_4:62672228-62672247 Msa0512750:intron 20.0%
!! AATCCTACAAAATATTTGAA+AGG + chr3_4:62672863-62672882 Msa0512750:CDS 20.0%
!! ATCCTACAAAATATTTGAAA+GGG + chr3_4:62672864-62672883 Msa0512750:CDS 20.0%
!!! ACTCATAAGTAATTGTTATT+GGG - chr3_4:62673061-62673080 None:intergenic 20.0%
!! TAGAATTAAATTAGAGTGAT+GGG - chr3_4:62673124-62673143 None:intergenic 20.0%
!! TTAGAATTAAATTAGAGTGA+TGG - chr3_4:62673125-62673144 None:intergenic 20.0%
!! TTTAGCTAATCAAAATAATG+TGG + chr3_4:62673158-62673177 Msa0512750:intron 20.0%
! TACAAATCATCAATCTTTCA+TGG + chr3_4:62670818-62670837 Msa0512750:intron 25.0%
! TCAATTGACGTTGAAAATTA+TGG + chr3_4:62670904-62670923 Msa0512750:intron 25.0%
! TACAAACTGAACAAAAACAT+GGG - chr3_4:62671119-62671138 None:intergenic 25.0%
! ATACAAACTGAACAAAAACA+TGG - chr3_4:62671120-62671139 None:intergenic 25.0%
! TTCAAATGGGTAAATTTCAT+TGG - chr3_4:62671150-62671169 None:intergenic 25.0%
! AGAAAAACATGAGTTCAAAT+GGG - chr3_4:62671163-62671182 None:intergenic 25.0%
! AAGAAAAACATGAGTTCAAA+TGG - chr3_4:62671164-62671183 None:intergenic 25.0%
!! ATTTGAACTCATGTTTTTCT+TGG + chr3_4:62671163-62671182 Msa0512750:intron 25.0%
! AGGTGAAATAGTTATTTATG+TGG + chr3_4:62671242-62671261 Msa0512750:intron 25.0%
! GGTGAAATAGTTATTTATGT+GGG + chr3_4:62671243-62671262 Msa0512750:intron 25.0%
!! ATTTTATCATCAAACCATTG+TGG - chr3_4:62671538-62671557 None:intergenic 25.0%
! GACTAAATGAAAGCAATATA+TGG + chr3_4:62671578-62671597 Msa0512750:intron 25.0%
! GATTCCAGAAAAATTAACAA+AGG - chr3_4:62671622-62671641 None:intergenic 25.0%
! AGAAATTGAGAACTCTAATT+AGG - chr3_4:62671644-62671663 None:intergenic 25.0%
! TTTCAAAACTAGATCTATAC+AGG - chr3_4:62671967-62671986 None:intergenic 25.0%
!! TCAAGGAATAAATTGTTTCT+AGG - chr3_4:62672044-62672063 None:intergenic 25.0%
! ATAACTAATGTAACGTAAGA+AGG - chr3_4:62672436-62672455 None:intergenic 25.0%
! TTACGTTACATTAGTTATGA+TGG + chr3_4:62672438-62672457 Msa0512750:intron 25.0%
! TCTCCTTAATACATAATCTA+CGG - chr3_4:62672660-62672679 None:intergenic 25.0%
!! GTTTCTCTTATAGTTTTTCT+AGG - chr3_4:62672728-62672747 None:intergenic 25.0%
!!! AAGTAAGGATAAGTATTGAA+GGG - chr3_4:62672789-62672808 None:intergenic 25.0%
!!! AAAGTAAGGATAAGTATTGA+AGG - chr3_4:62672790-62672809 None:intergenic 25.0%
! TATCCTTACTTTACTTATGT+AGG + chr3_4:62672798-62672817 Msa0512750:intron 25.0%
! TCCTACAAAATATTTGAAAG+GGG + chr3_4:62672865-62672884 Msa0512750:CDS 25.0%
! GACTCATAAGTAATTGTTAT+TGG - chr3_4:62673062-62673081 None:intergenic 25.0%
! TGTAAAATATGACGACAATT+TGG - chr3_4:62673197-62673216 None:intergenic 25.0%
! ATCAGGATTCTAATACAAAT+AGG + chr3_4:62673447-62673466 Msa0512750:exon 25.0%
! AATATCACTTCATATTGAGT+CGG + chr3_4:62673581-62673600 Msa0512750:three_prime_UTR 25.0%
CAATCCTTATAGGAATTCTT+GGG + chr3_4:62670758-62670777 Msa0512750:CDS 30.0%
TTCACAAAAAACTGTGACTA+TGG - chr3_4:62670950-62670969 None:intergenic 30.0%
TCTGTGTTTGATGTAACTAA+GGG + chr3_4:62671017-62671036 Msa0512750:CDS 30.0%
ACTAAGGGAAAATCACATTA+TGG + chr3_4:62671032-62671051 Msa0512750:CDS 30.0%
GGGTTGAATTTCACTTTAAA+TGG + chr3_4:62671263-62671282 Msa0512750:intron 30.0%
TCTTCATTTGTATCCTACAT+TGG + chr3_4:62671313-62671332 Msa0512750:intron 30.0%
CAACAAAGTATAACCAATGT+AGG - chr3_4:62671329-62671348 None:intergenic 30.0%
! GTGACCTTTGTTAATTTTTC+TGG + chr3_4:62671615-62671634 Msa0512750:intron 30.0%
!! CAAAAGCAAAAGTACCTTTA+AGG - chr3_4:62671773-62671792 None:intergenic 30.0%
CGATGTTCTGATTTATCTAA+AGG - chr3_4:62671832-62671851 None:intergenic 30.0%
!! TCTTTAGAGTGAAAATCGAA+AGG + chr3_4:62671935-62671954 Msa0512750:intron 30.0%
!! GTTTTGGTAATAGTACCATA+TGG - chr3_4:62672002-62672021 None:intergenic 30.0%
! TTCCTTTTTGTTGATCATGT+AGG + chr3_4:62672094-62672113 Msa0512750:intron 30.0%
TCTATCTTCCAGATTAATTC+AGG - chr3_4:62672239-62672258 None:intergenic 30.0%
! ACGCAGTTTAATTTAAGGTA+AGG - chr3_4:62672268-62672287 None:intergenic 30.0%
AAAACAAAGTAGCAGATTGA+AGG - chr3_4:62672355-62672374 None:intergenic 30.0%
GATTAAAGATATGCTTGCTT+TGG + chr3_4:62672390-62672409 Msa0512750:intron 30.0%
AGATCGTAGAAACTATGATT+AGG + chr3_4:62672609-62672628 Msa0512750:intron 30.0%
CTCCTTAATACATAATCTAC+GGG - chr3_4:62672659-62672678 None:intergenic 30.0%
! AATATTTTGTAGGATTCCCT+CGG - chr3_4:62672859-62672878 None:intergenic 30.0%
! ACCCCTTTCAAATATTTTGT+AGG - chr3_4:62672869-62672888 None:intergenic 30.0%
ATAAATGCAGATTATGACAC+AGG + chr3_4:62673239-62673258 Msa0512750:intron 30.0%
!!! TTACTTGTTTTGATCAGGTA+TGG + chr3_4:62673263-62673282 Msa0512750:intron 30.0%
AACAGATGCAAAGTTTAATC+AGG + chr3_4:62673430-62673449 Msa0512750:exon 30.0%
!!! AAGGCTTATTTTAATGAAGC+TGG + chr3_4:62673517-62673536 Msa0512750:three_prime_UTR 30.0%
TTTAATGAAGCTGGTAATTG+AGG + chr3_4:62673526-62673545 Msa0512750:three_prime_UTR 30.0%
AAAAGAGCAAAACCGGTAAT+AGG - chr3_4:62670454-62670473 None:intergenic 35.0%
CCAAGAATTCCTATAAGGAT+TGG - chr3_4:62670760-62670779 None:intergenic 35.0%
CCAATCCTTATAGGAATTCT+TGG + chr3_4:62670757-62670776 Msa0512750:CDS 35.0%
GTAGCTGGTGTATGAAAAAT+TGG - chr3_4:62670847-62670866 None:intergenic 35.0%
! TTAACCATACTTTTGCTTGC+AGG - chr3_4:62670883-62670902 None:intergenic 35.0%
GTCTGTGTTTGATGTAACTA+AGG + chr3_4:62671016-62671035 Msa0512750:CDS 35.0%
! TGAACTCATGTTTTTCTTGG+TGG + chr3_4:62671166-62671185 Msa0512750:intron 35.0%
! GAACTCATGTTTTTCTTGGT+GGG + chr3_4:62671167-62671186 Msa0512750:intron 35.0%
! AACTCATGTTTTTCTTGGTG+GGG + chr3_4:62671168-62671187 Msa0512750:intron 35.0%
! TTCTTCTCTGGAAATTTCAC+AGG + chr3_4:62671222-62671241 Msa0512750:CDS 35.0%
!!! ACATGTCTACCTTGTTTTCA+CGG + chr3_4:62671414-62671433 Msa0512750:intron 35.0%
TTAAATTGCTACTGCCACAA+TGG + chr3_4:62671521-62671540 Msa0512750:intron 35.0%
!! AGAAGTTTTCAAGCATGAAG+TGG - chr3_4:62671687-62671706 None:intergenic 35.0%
AACTAGATCTATACAGGACA+GGG - chr3_4:62671961-62671980 None:intergenic 35.0%
AAACTAGATCTATACAGGAC+AGG - chr3_4:62671962-62671981 None:intergenic 35.0%
! AGCAATAGCAGGAAAAGTTT+TGG - chr3_4:62672018-62672037 None:intergenic 35.0%
CTCCTACATGATCAACAAAA+AGG - chr3_4:62672099-62672118 None:intergenic 35.0%
TTTGTTGATCATGTAGGAGA+TGG + chr3_4:62672100-62672119 Msa0512750:intron 35.0%
AAATTCAAGGAGAGAAGAAC+AGG - chr3_4:62672189-62672208 None:intergenic 35.0%
! AAAGATATGCTTGCTTTGGA+AGG + chr3_4:62672394-62672413 Msa0512750:intron 35.0%
TTATGAGCATAGCAGAGATA+AGG + chr3_4:62672497-62672516 Msa0512750:intron 35.0%
TCGTAGAAACTATGATTAGG+TGG + chr3_4:62672612-62672631 Msa0512750:intron 35.0%
GACCCGTAGATTATGTATTA+AGG + chr3_4:62672654-62672673 Msa0512750:intron 35.0%
AAGGAGAGTAGATCAAATAG+AGG + chr3_4:62672673-62672692 Msa0512750:intron 35.0%
AGGAGAGTAGATCAAATAGA+GGG + chr3_4:62672674-62672693 Msa0512750:intron 35.0%
AGGCCTACATAAGTAAAGTA+AGG - chr3_4:62672804-62672823 None:intergenic 35.0%
AGAAAAGCAGAAGATTGAAG+AGG + chr3_4:62672922-62672941 Msa0512750:CDS 35.0%
AACCTCAATGCAGTTCAAAA+TGG + chr3_4:62672951-62672970 Msa0512750:CDS 35.0%
TAATCTGCATTTATGCAGGT+AGG - chr3_4:62673233-62673252 None:intergenic 35.0%
GTCATAATCTGCATTTATGC+AGG - chr3_4:62673237-62673256 None:intergenic 35.0%
!!! CAGGTTTACTTGTTTTGATC+AGG + chr3_4:62673258-62673277 Msa0512750:intron 35.0%
TCATATTGAGTCGGTATTTC+TGG + chr3_4:62673590-62673609 Msa0512750:three_prime_UTR 35.0%
ATCATTCTTTACATCACGTG+TGG - chr3_4:62673623-62673642 None:intergenic 35.0%
AAGGACGAAAAGAGCAAAAC+CGG - chr3_4:62670461-62670480 None:intergenic 40.0%
AAAATCGGAGAAGAAGAGCA+AGG - chr3_4:62670486-62670505 None:intergenic 40.0%
! CCTGTGAAGTGATGGAAAAT+CGG - chr3_4:62670501-62670520 None:intergenic 40.0%
AAAAGTGACCTGTGAAGTGA+TGG - chr3_4:62670509-62670528 None:intergenic 40.0%
GAAGAGCTTGCATTGTTCAA+TGG + chr3_4:62670718-62670737 Msa0512750:CDS 40.0%
TTGTTCAATGGAACTGATCC+AGG + chr3_4:62670730-62670749 Msa0512750:CDS 40.0%
TGTTCAATGGAACTGATCCA+GGG + chr3_4:62670731-62670750 Msa0512750:CDS 40.0%
TCCTTATAGGAATTCTTGGG+TGG + chr3_4:62670761-62670780 Msa0512750:intron 40.0%
CCTTATAGGAATTCTTGGGT+GGG + chr3_4:62670762-62670781 Msa0512750:intron 40.0%
GGTGATTAATCAAGTGTAGC+TGG - chr3_4:62670862-62670881 None:intergenic 40.0%
ATCACCTGCAAGCAAAAGTA+TGG + chr3_4:62670876-62670895 Msa0512750:intron 40.0%
GGAAAATCACATTATGGTCC+AGG + chr3_4:62671038-62671057 Msa0512750:CDS 40.0%
AAATCACATTATGGTCCAGG+AGG + chr3_4:62671041-62671060 Msa0512750:CDS 40.0%
GTTATCATCACTTTGCTGGA+AGG + chr3_4:62671066-62671085 Msa0512750:CDS 40.0%
AACAAAAACATGGGTGAAGC+AGG - chr3_4:62671110-62671129 None:intergenic 40.0%
GTGGGGATTTCATGATTTCA+GGG + chr3_4:62671185-62671204 Msa0512750:intron 40.0%
ATTGCAACACCGTGAAAACA+AGG - chr3_4:62671426-62671445 None:intergenic 40.0%
! CTCTAAAGAAACTGCAGCTA+GGG - chr3_4:62671924-62671943 None:intergenic 40.0%
! ACTCTAAAGAAACTGCAGCT+AGG - chr3_4:62671925-62671944 None:intergenic 40.0%
! CCTGCACGCAGTTTAATTTA+AGG - chr3_4:62672273-62672292 None:intergenic 40.0%
CCTTAAATTAAACTGCGTGC+AGG + chr3_4:62672270-62672289 Msa0512750:intron 40.0%
!! TATGCTTGCTTTGGAAGGAT+AGG + chr3_4:62672399-62672418 Msa0512750:intron 40.0%
! GGAAGTGTGGTAAGACTAAA+CGG + chr3_4:62672530-62672549 Msa0512750:intron 40.0%
GAAGTGTGGTAAGACTAAAC+GGG + chr3_4:62672531-62672550 Msa0512750:intron 40.0%
ATGACGACATTAGAGAGAGT+TGG + chr3_4:62672566-62672585 Msa0512750:intron 40.0%
TGACGACATTAGAGAGAGTT+GGG + chr3_4:62672567-62672586 Msa0512750:intron 40.0%
TCTACGATCTTTGCTACTGA+AGG - chr3_4:62672599-62672618 None:intergenic 40.0%
AGGGTAGTCAAATCACTAGA+GGG + chr3_4:62672693-62672712 Msa0512750:intron 40.0%
CTTTACTTATGTAGGCCTGT+TGG + chr3_4:62672806-62672825 Msa0512750:intron 40.0%
! CTCCATTTTGAACTGCATTG+AGG - chr3_4:62672956-62672975 None:intergenic 40.0%
TTCAAAATGGAGCCAAGATG+AGG + chr3_4:62672964-62672983 Msa0512750:CDS 40.0%
TCAAAATGGAGCCAAGATGA+GGG + chr3_4:62672965-62672984 Msa0512750:CDS 40.0%
CCACTAGAAATTGCTTTGAC+CGG + chr3_4:62673319-62673338 Msa0512750:CDS 40.0%
CACTAGAAATTGCTTTGACC+GGG + chr3_4:62673320-62673339 Msa0512750:CDS 40.0%
!! TGCTTTGAAGAGTCTCAGTT+AGG + chr3_4:62673364-62673383 Msa0512750:CDS 40.0%
!! GCTTTGAAGAGTCTCAGTTA+GGG + chr3_4:62673365-62673384 Msa0512750:CDS 40.0%
TACGATCCTCACACAGAACA+AGG + chr3_4:62670399-62670418 Msa0512750:five_prime_UTR 45.0%
CTAGCAACGTCTCCTATTAC+CGG + chr3_4:62670439-62670458 Msa0512750:CDS 45.0%
GGAGAAGAAGAGCAAGGAAA+AGG - chr3_4:62670480-62670499 None:intergenic 45.0%
! CCGATTTTCCATCACTTCAC+AGG + chr3_4:62670498-62670517 Msa0512750:CDS 45.0%
CCCACCCAAGAATTCCTATA+AGG - chr3_4:62670765-62670784 None:intergenic 45.0%
AAGTGATGATAACCTCCTCC+TGG - chr3_4:62671059-62671078 None:intergenic 45.0%
GGAGGTTATCATCACTTTGC+TGG + chr3_4:62671062-62671081 Msa0512750:CDS 45.0%
AACATGGGTGAAGCAGGAAA+GGG - chr3_4:62671104-62671123 None:intergenic 45.0%
AAACATGGGTGAAGCAGGAA+AGG - chr3_4:62671105-62671124 None:intergenic 45.0%
GGTGGGGATTTCATGATTTC+AGG + chr3_4:62671184-62671203 Msa0512750:intron 45.0%
! TTTCTAGGAGCAGCAATAGC+AGG - chr3_4:62672029-62672048 None:intergenic 45.0%
! AGGTCAAGAGTGTAGTTGAC+TGG + chr3_4:62672290-62672309 Msa0512750:intron 45.0%
! TCAAGAGTGTAGTTGACTGG+AGG + chr3_4:62672293-62672312 Msa0512750:CDS 45.0%
! CAAGAGTGTAGTTGACTGGA+GGG + chr3_4:62672294-62672313 Msa0512750:CDS 45.0%
! AAGAGTGTAGTTGACTGGAG+GGG + chr3_4:62672295-62672314 Msa0512750:CDS 45.0%
! CATAACAGTGCAAGAGCATG+TGG - chr3_4:62672482-62672501 None:intergenic 45.0%
CAGAGATAAGGTAGTTGCGT+TGG + chr3_4:62672509-62672528 Msa0512750:intron 45.0%
GTGGTAAGACTAAACGGGAT+AGG + chr3_4:62672536-62672555 Msa0512750:intron 45.0%
GACGACATTAGAGAGAGTTG+GGG + chr3_4:62672568-62672587 Msa0512750:intron 45.0%
GAGGGTAGTCAAATCACTAG+AGG + chr3_4:62672692-62672711 Msa0512750:intron 45.0%
AGTCAAATCACTAGAGGGAG+AGG + chr3_4:62672698-62672717 Msa0512750:intron 45.0%
TTTGAAAGGGGTCGAAGCTA+AGG + chr3_4:62672877-62672896 Msa0512750:CDS 45.0%
GATCAGGTATGGTGTGATGT+TGG + chr3_4:62673274-62673293 Msa0512750:intron 45.0%
! CCGGTCAAAGCAATTTCTAG+TGG - chr3_4:62673322-62673341 None:intergenic 45.0%
ACAACGCTTACTCATCTTCC+CGG - chr3_4:62673341-62673360 None:intergenic 45.0%
CCTTCATATACCTCTAACCC+AGG - chr3_4:62673394-62673413 None:intergenic 45.0%
! CCTGGGTTAGAGGTATATGA+AGG + chr3_4:62673391-62673410 Msa0512750:CDS 45.0%
!! GATTTGTAGAAGAGTGCCTC+CGG + chr3_4:62673640-62673659 Msa0512750:three_prime_UTR 45.0%
TGTGAACGAATTCCAAGCAC+CGG - chr3_4:62673662-62673681 None:intergenic 45.0%
!! AAAAATAAAATAAAAATTGT+TGG - chr3_4:62670537-62670556 None:intergenic 5.0%
! TCATCGCCTTGTTCTGTGTG+AGG - chr3_4:62670408-62670427 None:intergenic 50.0%
! CCTATAAGGATTGGCAACCC+TGG - chr3_4:62670751-62670770 None:intergenic 50.0%
CCAGGGTTGCCAATCCTTAT+AGG + chr3_4:62670748-62670767 Msa0512750:CDS 50.0%
TCACATTATGGTCCAGGAGG+AGG + chr3_4:62671044-62671063 Msa0512750:CDS 50.0%
!! GGACTTACTGACTCATTGCG+CGG + chr3_4:62672121-62672140 Msa0512750:CDS 50.0%
AGGTAGTTGCGTTGGAAGTG+TGG + chr3_4:62672517-62672536 Msa0512750:intron 50.0%
AGGCCTGTTGGCAAGTTAGT+TGG + chr3_4:62672818-62672837 Msa0512750:intron 50.0%
! CGACCAACTAACTTGCCAAC+AGG - chr3_4:62672824-62672843 None:intergenic 50.0%
GTCGATACTACGATAGCCGA+GGG + chr3_4:62672840-62672859 Msa0512750:CDS 50.0%
AAATGGAGCCAAGATGAGGG+CGG + chr3_4:62672968-62672987 Msa0512750:CDS 50.0%
! TGATGTTGGCTACCCTAGGT+TGG + chr3_4:62673288-62673307 Msa0512750:CDS 50.0%
!! GCTACCCTAGGTTGGTTAAG+AGG + chr3_4:62673296-62673315 Msa0512750:CDS 50.0%
GTGGCCTCTTAACCAACCTA+GGG - chr3_4:62673303-62673322 None:intergenic 50.0%
AGTGGCCTCTTAACCAACCT+AGG - chr3_4:62673304-62673323 None:intergenic 50.0%
AGTCTCAGTTAGGGCAACCT+GGG + chr3_4:62673374-62673393 Msa0512750:CDS 50.0%
GCTTCTCGCGCTTTCTTCTC+TGG + chr3_4:62671210-62671229 Msa0512750:CDS 55.0%
GGTCGATACTACGATAGCCG+AGG + chr3_4:62672839-62672858 Msa0512750:CDS 55.0%
GAAAGGGGTCGAAGCTAAGG+CGG + chr3_4:62672880-62672899 Msa0512750:CDS 55.0%
ATACCTCACCGCCCTCATCT+TGG - chr3_4:62672979-62672998 None:intergenic 55.0%
! GGTGTGATGTTGGCTACCCT+AGG + chr3_4:62673284-62673303 Msa0512750:CDS 55.0%
GAGTCTCAGTTAGGGCAACC+TGG + chr3_4:62673373-62673392 Msa0512750:CDS 55.0%
! GTTAGGGCAACCTGGGTTAG+AGG + chr3_4:62673381-62673400 Msa0512750:CDS 55.0%
!! GAACGAATTCCAAGCACCGG+AGG - chr3_4:62673659-62673678 None:intergenic 55.0%
GTCGAAGCTAAGGCGGCAAG+AGG + chr3_4:62672887-62672906 Msa0512750:CDS 60.0%
!! AGAAGAGTGCCTCCGGTGCT+TGG + chr3_4:62673647-62673666 Msa0512750:three_prime_UTR 60.0%
! GCGCGGACTGTCTAGCACTG+AGG + chr3_4:62672138-62672157 Msa0512750:CDS 65.0%
GAGCCAAGATGAGGGCGGTG+AGG + chr3_4:62672973-62672992 Msa0512750:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 62670388 62673694 62670388 ID=Msa0512750;Name=Msa0512750
chr3_4 mRNA 62670388 62673694 62670388 ID=Msa0512750-mRNA-1;Parent=Msa0512750;Name=Msa0512750-mRNA-1;_AED=0.08;_eAED=0.08;_QI=36|1|1|1|1|1|8|247|238
chr3_4 exon 62670388 62670519 62670388 ID=Msa0512750-mRNA-1:exon:15513;Parent=Msa0512750-mRNA-1
chr3_4 exon 62670703 62670779 62670703 ID=Msa0512750-mRNA-1:exon:15514;Parent=Msa0512750-mRNA-1
chr3_4 exon 62671016 62671087 62671016 ID=Msa0512750-mRNA-1:exon:15515;Parent=Msa0512750-mRNA-1
chr3_4 exon 62671206 62671243 62671206 ID=Msa0512750-mRNA-1:exon:15516;Parent=Msa0512750-mRNA-1
chr3_4 exon 62672116 62672159 62672116 ID=Msa0512750-mRNA-1:exon:15517;Parent=Msa0512750-mRNA-1
chr3_4 exon 62672292 62672338 62672292 ID=Msa0512750-mRNA-1:exon:15518;Parent=Msa0512750-mRNA-1
chr3_4 exon 62672820 62672994 62672820 ID=Msa0512750-mRNA-1:exon:15519;Parent=Msa0512750-mRNA-1
chr3_4 exon 62673280 62673694 62673280 ID=Msa0512750-mRNA-1:exon:15520;Parent=Msa0512750-mRNA-1
chr3_4 five_prime_UTR 62670388 62670423 62670388 ID=Msa0512750-mRNA-1:five_prime_utr;Parent=Msa0512750-mRNA-1
chr3_4 CDS 62670424 62670519 62670424 ID=Msa0512750-mRNA-1:cds;Parent=Msa0512750-mRNA-1
chr3_4 CDS 62670703 62670779 62670703 ID=Msa0512750-mRNA-1:cds;Parent=Msa0512750-mRNA-1
chr3_4 CDS 62671016 62671087 62671016 ID=Msa0512750-mRNA-1:cds;Parent=Msa0512750-mRNA-1
chr3_4 CDS 62671206 62671243 62671206 ID=Msa0512750-mRNA-1:cds;Parent=Msa0512750-mRNA-1
chr3_4 CDS 62672116 62672159 62672116 ID=Msa0512750-mRNA-1:cds;Parent=Msa0512750-mRNA-1
chr3_4 CDS 62672292 62672338 62672292 ID=Msa0512750-mRNA-1:cds;Parent=Msa0512750-mRNA-1
chr3_4 CDS 62672820 62672994 62672820 ID=Msa0512750-mRNA-1:cds;Parent=Msa0512750-mRNA-1
chr3_4 CDS 62673280 62673447 62673280 ID=Msa0512750-mRNA-1:cds;Parent=Msa0512750-mRNA-1
chr3_4 three_prime_UTR 62673448 62673694 62673448 ID=Msa0512750-mRNA-1:three_prime_utr;Parent=Msa0512750-mRNA-1
Gene Sequence

>Msa0512750

ATGACTTTAAAGACACTAGCAACGTCTCCTATTACCGGTTTTGCTCTTTTCGTCCTTTTCCTTGCTCTTCTTCTCCGATTTTCCATCACTTCACAGAAATTGTTCACTACTGAAGAGCTTGCATTGTTCAATGGAACTGATCCAGGGTTGCCAATCCTTATAGGAATTCTTGGGTCTGTGTTTGATGTAACTAAGGGAAAATCACATTATGGTCCAGGAGGAGGTTATCATCACTTTGCTGGAAGGGATGCTTCTCGCGCTTTCTTCTCTGGAAATTTCACAGGAGATGGACTTACTGACTCATTGCGCGGACTGTCTAGCACTGAGGTCAAGAGTGTAGTTGACTGGAGGGGTTTCTACTTAAGATCTTACAAGCCTGTTGGCAAGTTAGTTGGTCGATACTACGATAGCCGAGGGAATCCTACAAAATATTTGAAAGGGGTCGAAGCTAAGGCGGCAAGAGGTGCTCAGCTTCTAGAAAAGCAGAAGATTGAAGAGGCTAAACAACCTCAATGCAGTTCAAAATGGAGCCAAGATGAGGGCGGTGAGGTATGGTGTGATGTTGGCTACCCTAGGTTGGTTAAGAGGCCACTAGAAATTGCTTTGACCGGGAAGATGAGTAAGCGTTGTGCTTGCTTTGAAGAGTCTCAGTTAGGGCAACCTGGGTTAGAGGTATATGAAGGTTGTGACTACAATGCAAACAGATGCAAAGTTTAA

Protein sequence

>Msa0512750

MTLKTLATSPITGFALFVLFLALLLRFSITSQKLFTTEELALFNGTDPGLPILIGILGSVFDVTKGKSHYGPGGGYHHFAGRDASRAFFSGNFTGDGLTDSLRGLSSTEVKSVVDWRGFYLRSYKPVGKLVGRYYDSRGNPTKYLKGVEAKAARGAQLLEKQKIEEAKQPQCSSKWSQDEGGEVWCDVGYPRLVKRPLEIALTGKMSKRCACFEESQLGQPGLEVYEGCDYNANRCKV*