AlfalfaGEDB | Msa0108850

M. sativa cultivar zhongmu-4 / Msa0108850

KEGG: -
GO: GO:0003674 GO:0005096 GO:0005488 GO:0005543 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005794 GO:0005886 GO:0006810 GO:0006886 GO:0007275 GO:0008047 GO:0008104 GO:0008150 GO:0008289 GO:0009314 GO:0009416 GO:0009555 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009637 GO:0009638 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0010646 GO:0010647 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0023051 GO:0023056 GO:0030234 GO:0030695 GO:0032501 GO:0032502 GO:0033036 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0048046 GO:0048229 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0098772 GO:1901419 GO:1901421 GO:1905957 GO:1905959
PFAM: PF00168.33

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0108850	XP_003589656.1	97.093	172	5	0	1	172	1	172	5.85e-117	338

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0108850	sp\|Q9S7J9\|CAR9_ARATH	66.864	169	53	2	1	167	1	168	2.46e-79	236

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0108850	G7I9Z6	97.093	172	5	0	1	172	1	172	2.79e-117	338

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0012260	Msa0108850	0.912196	2.569603e-83	-8.615850e-47
Msa0048000	Msa0108850	0.813413	2.592538e-51	-8.615850e-47
Msa0060970	Msa0108850	0.912819	1.257492e-83	-8.615850e-47
Msa0071550	Msa0108850	0.814268	1.679945e-51	-8.615850e-47
Msa0085720	Msa0108850	0.808958	2.398337e-50	-8.615850e-47
Msa0102750	Msa0108850	0.802998	4.298735e-49	-8.615850e-47
Msa0108850	Msa0137660	-0.819488	1.131104e-52	-8.615850e-47
Msa0108850	Msa0140170	0.814071	1.856406e-51	-8.615850e-47
Msa0108850	Msa0151950	0.998403	4.565567e-264	-8.615850e-47
Msa0108850	Msa0162810	0.809477	1.856125e-50	-8.615850e-47
Msa0108850	Msa0182750	-0.824151	9.428740e-54	-8.615850e-47
Msa0108850	Msa0191630	0.828316	9.621238e-55	-8.615850e-47
Msa0108850	Msa0226290	0.813111	3.019350e-51	-8.615850e-47
Msa0108850	Msa0233610	0.800392	1.472329e-48	-8.615850e-47
Msa0108850	Msa0250670	0.802489	5.474802e-49	-8.615850e-47
Msa0108850	Msa0260810	0.808204	3.474792e-50	-8.615850e-47
Msa0108850	Msa0274490	0.802878	4.552060e-49	-8.615850e-47
Msa0108850	Msa0279210	-0.821589	3.725766e-53	-8.615850e-47
Msa0108850	Msa0279250	-0.825846	3.751416e-54	-8.615850e-47
Msa0108850	Msa0288320	0.881892	1.644825e-70	-8.615850e-47
Msa0108850	Msa0289400	0.806882	6.627336e-50	-8.615850e-47
Msa0108850	Msa0304700	0.820519	6.571627e-53	-8.615850e-47
Msa0108850	Msa0312310	0.843103	1.721111e-58	-8.615850e-47
Msa0108850	Msa0318970	-0.820804	5.650526e-53	-8.615850e-47
Msa0108850	Msa0324880	0.803569	3.274978e-49	-8.615850e-47
Msa0108850	Msa0362060	0.821988	3.011902e-53	-8.615850e-47
Msa0108850	Msa0363170	0.815648	8.299597e-52	-8.615850e-47
Msa0108850	Msa0370870	0.890973	6.068984e-74	-8.615850e-47
Msa0108850	Msa0388030	-0.814372	1.592923e-51	-8.615850e-47
Msa0108850	Msa0410290	0.812080	5.074659e-51	-8.615850e-47
Msa0108850	Msa0416320	0.801115	1.048263e-48	-8.615850e-47
Msa0108850	Msa0419050	0.889096	3.287344e-73	-8.615850e-47
Msa0108850	Msa0464900	0.874226	7.971605e-68	-8.615850e-47
Msa0108850	Msa0473240	0.807224	5.611768e-50	-8.615850e-47
Msa0108850	Msa0491520	0.800714	1.266337e-48	-8.615850e-47
Msa0108850	Msa0508540	0.802829	4.658119e-49	-8.615850e-47
Msa0108850	Msa0510560	0.895184	1.219264e-75	-8.615850e-47
Msa0108850	Msa0519390	0.817651	2.952854e-52	-8.615850e-47
Msa0108850	Msa0527980	-0.803775	2.967188e-49	-8.615850e-47
Msa0108850	Msa0622340	0.817257	3.622706e-52	-8.615850e-47
Msa0108850	Msa0708050	-0.811343	7.339894e-51	-8.615850e-47
Msa0108850	Msa0721150	0.848253	6.896838e-60	-8.615850e-47
Msa0108850	Msa0724950	0.829017	6.511041e-55	-8.615850e-47
Msa0108850	Msa0731710	0.804292	2.317166e-49	-8.615850e-47
Msa0108850	Msa0737800	0.824103	9.675897e-54	-8.615850e-47
Msa0108850	Msa0738940	0.802671	5.023224e-49	-8.615850e-47
Msa0108850	Msa0761760	0.842613	2.323462e-58	-8.615850e-47
Msa0108850	Msa0763080	0.827337	1.653903e-54	-8.615850e-47
Msa0108850	Msa0765010	0.826333	2.873135e-54	-8.615850e-47
Msa0108850	Msa0804060	0.837242	5.834528e-57	-8.615850e-47
Msa0108850	Msa0817270	0.820231	7.649435e-53	-8.615850e-47
Msa0108850	Msa0819670	0.807730	4.382703e-50	-8.615850e-47
Msa0108850	Msa0831150	0.806958	6.387909e-50	-8.615850e-47
Msa0108850	Msa0842240	0.847190	1.352280e-59	-8.615850e-47
Msa0108850	Msa0845070	0.826447	2.699657e-54	-8.615850e-47
Msa0108850	Msa0873930	0.852645	4.028754e-61	-8.615850e-47
Msa0108850	Msa0900200	0.813488	2.495989e-51	-8.615850e-47
Msa0108850	Msa0906670	0.826795	2.230267e-54	-8.615850e-47
Msa0108850	Msa0908170	0.849183	3.807745e-60	-8.615850e-47
Msa0108850	Msa0944730	0.839893	1.206687e-57	-8.615850e-47
Msa0108850	Msa0946080	0.814225	1.716683e-51	-8.615850e-47
Msa0108850	Msa0965520	0.834604	2.722270e-56	-8.615850e-47
Msa0108850	Msa1048700	0.802452	5.573136e-49	-8.615850e-47
Msa0108850	Msa1072530	-0.830049	3.655069e-55	-8.615850e-47
Msa0108850	Msa1159130	0.806284	8.864283e-50	-8.615850e-47
Msa0108850	Msa1214880	0.800178	1.627733e-48	-8.615850e-47
Msa0108850	Msa1218650	0.806566	7.728822e-50	-8.615850e-47
Msa0108850	Msa1254470	0.810601	1.063007e-50	-8.615850e-47
Msa0108850	Msa1397260	0.800162	1.640263e-48	-8.615850e-47
Msa0108850	Msa1404540	0.803949	2.730470e-49	-8.615850e-47
Msa0108850	Msa1405470	0.800318	1.524524e-48	-8.615850e-47
Msa0108850	Msa1415820	0.912877	1.176374e-83	-8.615850e-47
Msa0108850	Msa1419110	0.817653	2.948995e-52	-8.615850e-47
Msa0108850	Msa1431060	0.812744	3.634201e-51	-8.615850e-47
Msa0108850	Msa1439230	0.805813	1.113540e-49	-8.615850e-47
Msa0108850	Msa1458390	-0.830287	3.197344e-55	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0108850	MtrunA17_Chr1g0160811	97.093	172	5	0	1	172	1	172	5.38e-121	338
Msa0108850	MtrunA17_Chr4g0043861	65.644	163	55	1	4	166	3	164	3.75e-76	225
Msa0108850	MtrunA17_Chr3g0111361	62.346	162	60	1	4	165	3	163	7.17e-74	219
Msa0108850	MtrunA17_Chr2g0280981	58.537	164	67	1	4	167	2	164	4.46e-70	209
Msa0108850	MtrunA17_Chr8g0393081	58.537	164	67	1	4	167	19	181	1.03e-69	209
Msa0108850	MtrunA17_Chr6g0478401	55.488	164	72	1	4	167	15	177	9.72e-65	196
Msa0108850	MtrunA17_Chr8g0352751	43.226	155	86	2	6	159	5	158	3.36e-40	133
Msa0108850	MtrunA17_Chr8g0380381	44.937	158	85	2	5	161	88	244	7.30e-39	132
Msa0108850	MtrunA17_Chr3g0083541	42.949	156	87	2	5	159	242	396	2.98e-34	124
Msa0108850	MtrunA17_Chr2g0292461	42.405	158	89	2	5	161	171	327	4.02e-34	122
Msa0108850	MtrunA17_Chr2g0290631	42.282	149	83	2	6	152	5	152	1.17e-30	109
Msa0108850	MtrunA17_Chr2g0290721	34.118	85	54	2	9	92	3	86	1.23e-12	65.1

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0108850	AT1G70790.3	66.864	169	53	2	1	167	1	168	2.50e-80	236
Msa0108850	AT1G70790.2	66.864	169	53	2	1	167	1	168	2.50e-80	236
Msa0108850	AT1G70790.1	66.864	169	53	2	1	167	1	168	2.50e-80	236
Msa0108850	AT2G01540.1	60.355	169	64	2	1	167	1	168	6.78e-72	214
Msa0108850	AT1G70810.1	60.736	163	63	1	5	167	4	165	4.15e-70	209
Msa0108850	AT3G17980.1	56.364	165	71	1	3	167	14	177	1.69e-68	206
Msa0108850	AT1G48590.4	56.970	165	69	2	3	167	7	169	5.32e-67	202
Msa0108850	AT1G48590.1	56.970	165	69	2	3	167	7	169	5.32e-67	202
Msa0108850	AT1G48590.2	56.970	165	69	2	3	167	38	200	6.59e-67	202
Msa0108850	AT1G73580.1	54.545	165	74	1	3	167	5	168	4.74e-66	199
Msa0108850	AT1G23140.1	56.707	164	70	1	4	167	3	165	4.45e-64	194
Msa0108850	AT1G70790.4	70.769	130	36	1	40	167	2	131	1.68e-63	192
Msa0108850	AT1G66360.1	53.374	163	73	2	4	164	3	164	2.70e-62	190
Msa0108850	AT5G37740.1	51.497	167	77	2	4	167	3	168	5.22e-62	189
Msa0108850	AT1G70800.1	53.374	163	75	1	5	167	13	174	9.31e-61	186
Msa0108850	AT5G37740.2	48.295	176	79	2	4	167	3	178	2.57e-59	182
Msa0108850	AT1G48590.3	44.848	165	57	2	3	167	38	168	1.73e-46	150
Msa0108850	AT4G05330.2	47.436	156	80	2	5	159	143	297	5.81e-39	134
Msa0108850	AT4G21160.2	48.077	156	79	2	5	159	179	333	1.84e-38	134
Msa0108850	AT4G21160.3	48.077	156	79	2	5	159	179	333	1.84e-38	134
Msa0108850	AT4G21160.1	48.077	156	79	2	5	159	179	333	1.84e-38	134
Msa0108850	AT4G21160.4	48.077	156	79	2	5	159	179	333	1.84e-38	134
Msa0108850	AT4G05330.3	47.436	156	80	2	5	159	178	332	2.59e-38	134
Msa0108850	AT4G05330.1	47.436	156	80	2	5	159	178	332	2.59e-38	134
Msa0108850	AT5G47710.1	40.625	160	92	2	6	163	5	163	3.40e-35	121
Msa0108850	AT5G47710.2	40.625	160	92	2	6	163	5	163	3.40e-35	121
Msa0108850	AT5G47710.3	40.625	160	92	2	6	163	5	163	3.40e-35	121
Msa0108850	AT5G47710.4	40.625	160	92	2	6	163	5	163	3.40e-35	121
Msa0108850	AT3G07940.1	42.208	154	87	2	5	157	227	379	3.85e-35	126

Find 59 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CCAGGTTGCAAAGGTCTATT+AGG	0.188697	1_3:-20481489	Msa0108850:CDS
ATCCGTTTGGCAAGTCATTT+TGG	0.197413	1_3:-20483236	Msa0108850:five_prime_UTR
CTGAAGAGAGCAGTTGTATT+TGG	0.198293	1_3:-20481602	Msa0108850:CDS
TTTCTCCGTCGACGACAAAA+TGG	0.198849	1_3:-20481739	Msa0108850:CDS
CTTTATATAATAAATAATTT+AGG	0.213696	1_3:+20481365	None:intergenic
GGATTTGATTATGAAGTTTA+AGG	0.225701	1_3:+20483255	None:intergenic
AAGAATTAACCCTTTCAATA+AGG	0.243737	1_3:-20482028	Msa0108850:CDS
TGAAGTTTAAGGAGCTTCTT+TGG	0.258075	1_3:+20483266	None:intergenic
AACATAATACAACAGAAAAT+TGG	0.291858	1_3:+20483326	None:intergenic
TCAATCTTAGAATCATTTCT+TGG	0.308077	1_3:+20481562	None:intergenic
ATTTGTACACATTGAGCATA+TGG	0.352534	1_3:+20481693	None:intergenic
AGAATTAACCCTTTCAATAA+GGG	0.363219	1_3:-20482027	Msa0108850:CDS
CAAATGGTTGTGCAATCAAA+AGG	0.374974	1_3:-20481653	Msa0108850:CDS
GAAGTTTAAGGAGCTTCTTT+GGG	0.377034	1_3:+20483267	None:intergenic
ATTGAGTGGGTGGATGTTCC+AGG	0.378200	1_3:-20481507	Msa0108850:CDS
TCAAAAGGGTTCAAGCAAAT+AGG	0.382577	1_3:-20481638	Msa0108850:CDS
GGCATGGATAATAATGTTCT+TGG	0.394699	1_3:-20483212	Msa0108850:CDS
ACTTCATAATCAAATCCGTT+TGG	0.419897	1_3:-20483249	Msa0108850:five_prime_UTR
TTCTCCGTCGACGACAAAAT+GGG	0.428457	1_3:-20481738	Msa0108850:CDS
CTAAAACTTCGTATTAAAAG+AGG	0.428755	1_3:-20483185	Msa0108850:CDS
TGTCAACATTGGTCATGAAC+AGG	0.430334	1_3:-20483114	Msa0108850:intron
AAATGTTGAGAGTGGAGAAT+TGG	0.430897	1_3:-20481538	Msa0108850:CDS
CCAATGTTGACAACAACATA+AGG	0.434516	1_3:+20483125	None:intergenic
CAGGTTGCAAAGGTCTATTA+GGG	0.446108	1_3:-20481488	Msa0108850:CDS
AAATGTGATGTAATATATAG+TGG	0.446651	1_3:-20481299	Msa0108850:three_prime_UTR
CTCTTACATCCCTTATTGAA+AGG	0.451223	1_3:+20482018	None:intergenic
TTGCGATCTAGCAACTATGT+AGG	0.462106	1_3:-20483531	Msa0108850:five_prime_UTR
TAGTCGTTTGATTCATGCAT+TGG	0.478458	1_3:+20481401	None:intergenic
ATCTTAGAATCATTTCTTGG+AGG	0.484585	1_3:+20481565	None:intergenic
CCTAATAGACCTTTGCAACC+TGG	0.491322	1_3:+20481489	None:intergenic
TCTTACATCCCTTATTGAAA+GGG	0.497303	1_3:+20482019	None:intergenic
CTCCAAAATGACTTGCCAAA+CGG	0.499213	1_3:+20483234	None:intergenic
TGTAAGAGTTCCAATACGTC+TGG	0.504818	1_3:-20482003	Msa0108850:intron
GTTAATTCTTCATTCCACTC+AGG	0.513309	1_3:+20482041	None:intergenic
AAGTTGGATACTCTTCCAAA+TGG	0.514104	1_3:-20481669	Msa0108850:CDS
TTAATTCTTCATTCCACTCA+GGG	0.514723	1_3:+20482042	None:intergenic
CCTTATGTTGTTGTCAACAT+TGG	0.522538	1_3:-20483125	Msa0108850:CDS
TGCGATCTAGCAACTATGTA+GGG	0.526514	1_3:-20483530	Msa0108850:five_prime_UTR
AAATGGTTGTGCAATCAAAA+GGG	0.538475	1_3:-20481652	Msa0108850:CDS
CAATGTTGACAACAACATAA+GGG	0.538879	1_3:+20483126	None:intergenic
TCTAGCAACTATGTAGGGAT+AGG	0.544531	1_3:-20483525	Msa0108850:five_prime_UTR
AGATTGAGAAATGTTGAGAG+TGG	0.545029	1_3:-20481546	Msa0108850:CDS
TGAGAGTGGAGAATTGGTTG+TGG	0.553380	1_3:-20481532	Msa0108850:CDS
TTGATTCATGCATTGGACCT+CGG	0.559027	1_3:+20481408	None:intergenic
GTGGATGTTCCAGGTTGCAA+AGG	0.560781	1_3:-20481498	Msa0108850:CDS
GACAACAACATAAGGGTCGC+TGG	0.561798	1_3:+20483133	None:intergenic
AAGTTTAAGGAGCTTCTTTG+GGG	0.573694	1_3:+20483268	None:intergenic
TCAATGTGTACAAATGAAGT+TGG	0.578075	1_3:-20481685	Msa0108850:CDS
AAAACAATTGCAACCCTGAG+TGG	0.600340	1_3:-20482055	Msa0108850:CDS
AATTGGTTGTGGAAATTGAG+TGG	0.610176	1_3:-20481521	Msa0108850:CDS
GGTTGTGGAAATTGAGTGGG+TGG	0.614075	1_3:-20481517	Msa0108850:CDS
ATTGGTTGTGGAAATTGAGT+GGG	0.621207	1_3:-20481520	Msa0108850:CDS
TGCCAAAACAAAATTGAGGT+CGG	0.639420	1_3:-20483452	Msa0108850:five_prime_UTR
TACCTGCCAAAACAAAATTG+AGG	0.651981	1_3:-20483456	Msa0108850:five_prime_UTR
TACAACTGCTCTCTTCAGCA+AGG	0.655573	1_3:+20481607	None:intergenic
AAGTCTTATTGTAATATCCG+AGG	0.666252	1_3:-20481425	Msa0108850:three_prime_UTR
CAACTATGTAGGGATAGGAG+AGG	0.684285	1_3:-20483520	Msa0108850:five_prime_UTR
AGGTTGCAAAGGTCTATTAG+GGG	0.692342	1_3:-20481487	Msa0108850:CDS
AGTTTAAGGAGCTTCTTTGG+GGG	0.694941	1_3:+20483269	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TTTTAAGTTAAAATCAATTA+CGG	-	chr1_3:20482551-20482570	Msa0108850:intron	10.0%
!!!	TTTTAAGTTAAAATCAATTA+CGG	-	chr1_3:20482551-20482570	Msa0108850:intron	10.0%
!!!	ATTATGTTATTTTAATGCTT+TGG	+	chr1_3:20481387-20481406	None:intergenic	15.0%
!!!	AACAAAAAATTATTTTTACG+AGG	-	chr1_3:20482286-20482305	Msa0108850:intron	15.0%
!!	CAATTCATATGTATAAAAAA+GGG	+	chr1_3:20482360-20482379	None:intergenic	15.0%
!!	ACAATTCATATGTATAAAAA+AGG	+	chr1_3:20482361-20482380	None:intergenic	15.0%
!!!	ATTATGTTATTTTAATGCTT+TGG	+	chr1_3:20481387-20481406	None:intergenic	15.0%
!!!	AACAAAAAATTATTTTTACG+AGG	-	chr1_3:20482286-20482305	Msa0108850:intron	15.0%
!!	CAATTCATATGTATAAAAAA+GGG	+	chr1_3:20482360-20482379	None:intergenic	15.0%
!!	ACAATTCATATGTATAAAAA+AGG	+	chr1_3:20482361-20482380	None:intergenic	15.0%
!!	AACATAATACAACAGAAAAT+TGG	+	chr1_3:20481445-20481464	None:intergenic	20.0%
!!!	AATTCTTTTGACAAAATTAC+CGG	+	chr1_3:20481828-20481847	None:intergenic	20.0%
!!	GTTATGCAAAATTATGTTAT+TGG	-	chr1_3:20481944-20481963	Msa0108850:intron	20.0%
!!!	ATACTATGAATTGATTTTAC+AGG	-	chr1_3:20482205-20482224	Msa0108850:intron	20.0%
!!!	AATTTTTTGTTTTTAGACTC+AGG	+	chr1_3:20482277-20482296	None:intergenic	20.0%
!!!	TGTGTTTTATAATTGAAGTT+TGG	-	chr1_3:20482380-20482399	Msa0108850:intron	20.0%
!!	TAAACTGAACAATAAATTTG+AGG	-	chr1_3:20482484-20482503	Msa0108850:intron	20.0%
!!!	AATAACTAAATGCATTTTGT+GGG	-	chr1_3:20482886-20482905	Msa0108850:intron	20.0%
!!	TCATCAACAAATAAGTTAAT+TGG	+	chr1_3:20482963-20482982	None:intergenic	20.0%
!!	AAATGTGATGTAATATATAG+TGG	-	chr1_3:20483469-20483488	Msa0108850:five_prime_UTR	20.0%
!!	AACATAATACAACAGAAAAT+TGG	+	chr1_3:20481445-20481464	None:intergenic	20.0%
!!!	AATTCTTTTGACAAAATTAC+CGG	+	chr1_3:20481828-20481847	None:intergenic	20.0%
!!	GTTATGCAAAATTATGTTAT+TGG	-	chr1_3:20481944-20481963	Msa0108850:intron	20.0%
!!!	ATACTATGAATTGATTTTAC+AGG	-	chr1_3:20482205-20482224	Msa0108850:intron	20.0%
!!!	AATTTTTTGTTTTTAGACTC+AGG	+	chr1_3:20482277-20482296	None:intergenic	20.0%
!!!	TGTGTTTTATAATTGAAGTT+TGG	-	chr1_3:20482380-20482399	Msa0108850:intron	20.0%
!!	TAAACTGAACAATAAATTTG+AGG	-	chr1_3:20482484-20482503	Msa0108850:intron	20.0%
!!!	AATAACTAAATGCATTTTGT+GGG	-	chr1_3:20482886-20482905	Msa0108850:intron	20.0%
!!	TCATCAACAAATAAGTTAAT+TGG	+	chr1_3:20482963-20482982	None:intergenic	20.0%
!!	AAATGTGATGTAATATATAG+TGG	-	chr1_3:20483469-20483488	Msa0108850:five_prime_UTR	20.0%
!	GGATTTGATTATGAAGTTTA+AGG	+	chr1_3:20481516-20481535	None:intergenic	25.0%
!	CTAAAACTTCGTATTAAAAG+AGG	-	chr1_3:20481583-20481602	Msa0108850:CDS	25.0%
!!	ATTCTTTTGACAAAATTACC+GGG	+	chr1_3:20481827-20481846	None:intergenic	25.0%
!	ATCTGTATTGAATTTACTCT+TGG	+	chr1_3:20482053-20482072	None:intergenic	25.0%
!!	AATTTACAACCTTTCGTTTT+TGG	+	chr1_3:20482253-20482272	None:intergenic	25.0%
!!	TTTGCAAATATCAAGAGTTT+TGG	+	chr1_3:20482319-20482338	None:intergenic	25.0%
!!	GTTTTATAATTGAAGTTTGG+TGG	-	chr1_3:20482383-20482402	Msa0108850:intron	25.0%
!	TGGTTATGCAATAACAAAAA+TGG	-	chr1_3:20482435-20482454	Msa0108850:intron	25.0%
!	AAGAATTAACCCTTTCAATA+AGG	-	chr1_3:20482740-20482759	Msa0108850:intron	25.0%
!	AGAATTAACCCTTTCAATAA+GGG	-	chr1_3:20482741-20482760	Msa0108850:intron	25.0%
!!	CAATAACTAAATGCATTTTG+TGG	-	chr1_3:20482885-20482904	Msa0108850:intron	25.0%
!	TCAATCTTAGAATCATTTCT+TGG	+	chr1_3:20483209-20483228	None:intergenic	25.0%
!	GGATTTGATTATGAAGTTTA+AGG	+	chr1_3:20481516-20481535	None:intergenic	25.0%
!	CTAAAACTTCGTATTAAAAG+AGG	-	chr1_3:20481583-20481602	Msa0108850:CDS	25.0%
!!	ATTCTTTTGACAAAATTACC+GGG	+	chr1_3:20481827-20481846	None:intergenic	25.0%
!	ATCTGTATTGAATTTACTCT+TGG	+	chr1_3:20482053-20482072	None:intergenic	25.0%
!!	AATTTACAACCTTTCGTTTT+TGG	+	chr1_3:20482253-20482272	None:intergenic	25.0%
!!	TTTGCAAATATCAAGAGTTT+TGG	+	chr1_3:20482319-20482338	None:intergenic	25.0%
!!	GTTTTATAATTGAAGTTTGG+TGG	-	chr1_3:20482383-20482402	Msa0108850:intron	25.0%
!	TGGTTATGCAATAACAAAAA+TGG	-	chr1_3:20482435-20482454	Msa0108850:intron	25.0%
!	AAGAATTAACCCTTTCAATA+AGG	-	chr1_3:20482740-20482759	Msa0108850:intron	25.0%
!	AGAATTAACCCTTTCAATAA+GGG	-	chr1_3:20482741-20482760	Msa0108850:intron	25.0%
!!	CAATAACTAAATGCATTTTG+TGG	-	chr1_3:20482885-20482904	Msa0108850:intron	25.0%
!	TCAATCTTAGAATCATTTCT+TGG	+	chr1_3:20483209-20483228	None:intergenic	25.0%
	TGTACTAAGATTCCATTAGT+AGG	-	chr1_3:20481417-20481436	Msa0108850:three_prime_UTR	30.0%
	GTACTAAGATTCCATTAGTA+GGG	-	chr1_3:20481418-20481437	Msa0108850:three_prime_UTR	30.0%
	ACTTCATAATCAAATCCGTT+TGG	-	chr1_3:20481519-20481538	Msa0108850:CDS	30.0%
	CAATGTTGACAACAACATAA+GGG	+	chr1_3:20481645-20481664	None:intergenic	30.0%
	AGAGAAAAATAGAGAAAGCA+AGG	+	chr1_3:20481686-20481705	None:intergenic	30.0%
!!	GCTTTCTCTATTTTTCTCTA+AGG	-	chr1_3:20481687-20481706	Msa0108850:CDS	30.0%
!	TTGGTGATATTGTTAAGAGT+AGG	-	chr1_3:20481963-20481982	Msa0108850:intron	30.0%
	TAGGAATATCCAAAACCTTA+TGG	-	chr1_3:20481982-20482001	Msa0108850:intron	30.0%
	ATATCCAAAACCTTATGGTA+TGG	-	chr1_3:20481987-20482006	Msa0108850:intron	30.0%
!	CTTTTCCTTTGCTTTGTAAA+TGG	-	chr1_3:20482015-20482034	Msa0108850:CDS	30.0%
	AGTTACCATTTACAAAGCAA+AGG	+	chr1_3:20482023-20482042	None:intergenic	30.0%
!	TTGTCATCACATATTCCTTT+TGG	-	chr1_3:20482086-20482105	Msa0108850:intron	30.0%
!!	TCATTTTAGTCACCATTTTG+AGG	-	chr1_3:20482170-20482189	Msa0108850:intron	30.0%
!!	CATTTTAGTCACCATTTTGA+GGG	-	chr1_3:20482171-20482190	Msa0108850:intron	30.0%
!!	TTGATTTTAGTCCCTCAAAA+TGG	+	chr1_3:20482185-20482204	None:intergenic	30.0%
	TTAATTCTTCATTCCACTCA+GGG	+	chr1_3:20482729-20482748	None:intergenic	30.0%
	TCTTACATCCCTTATTGAAA+GGG	+	chr1_3:20482752-20482771	None:intergenic	30.0%
	ACTTGACTCTGTAACTTTAA+AGG	+	chr1_3:20482927-20482946	None:intergenic	30.0%
	ATTTGTACACATTGAGCATA+TGG	+	chr1_3:20483078-20483097	None:intergenic	30.0%
	TCAATGTGTACAAATGAAGT+TGG	-	chr1_3:20483083-20483102	Msa0108850:intron	30.0%
	AAATGGTTGTGCAATCAAAA+GGG	-	chr1_3:20483116-20483135	Msa0108850:CDS	30.0%
	AGCAGTTGTATTTGGAAAAA+TGG	-	chr1_3:20483174-20483193	Msa0108850:CDS	30.0%
	ATCTTAGAATCATTTCTTGG+AGG	+	chr1_3:20483206-20483225	None:intergenic	30.0%
!!	AAGTCTTATTGTAATATCCG+AGG	-	chr1_3:20483343-20483362	Msa0108850:intron	30.0%
	TGTACTAAGATTCCATTAGT+AGG	-	chr1_3:20481417-20481436	Msa0108850:three_prime_UTR	30.0%
	GTACTAAGATTCCATTAGTA+GGG	-	chr1_3:20481418-20481437	Msa0108850:three_prime_UTR	30.0%
	ACTTCATAATCAAATCCGTT+TGG	-	chr1_3:20481519-20481538	Msa0108850:CDS	30.0%
	CAATGTTGACAACAACATAA+GGG	+	chr1_3:20481645-20481664	None:intergenic	30.0%
	AGAGAAAAATAGAGAAAGCA+AGG	+	chr1_3:20481686-20481705	None:intergenic	30.0%
!!	GCTTTCTCTATTTTTCTCTA+AGG	-	chr1_3:20481687-20481706	Msa0108850:CDS	30.0%
!	TTGGTGATATTGTTAAGAGT+AGG	-	chr1_3:20481963-20481982	Msa0108850:intron	30.0%
	TAGGAATATCCAAAACCTTA+TGG	-	chr1_3:20481982-20482001	Msa0108850:intron	30.0%
	ATATCCAAAACCTTATGGTA+TGG	-	chr1_3:20481987-20482006	Msa0108850:intron	30.0%
!	CTTTTCCTTTGCTTTGTAAA+TGG	-	chr1_3:20482015-20482034	Msa0108850:CDS	30.0%
	AGTTACCATTTACAAAGCAA+AGG	+	chr1_3:20482023-20482042	None:intergenic	30.0%
!	TTGTCATCACATATTCCTTT+TGG	-	chr1_3:20482086-20482105	Msa0108850:intron	30.0%
!!	TCATTTTAGTCACCATTTTG+AGG	-	chr1_3:20482170-20482189	Msa0108850:intron	30.0%
!!	CATTTTAGTCACCATTTTGA+GGG	-	chr1_3:20482171-20482190	Msa0108850:intron	30.0%
!!	TTGATTTTAGTCCCTCAAAA+TGG	+	chr1_3:20482185-20482204	None:intergenic	30.0%
	TTAATTCTTCATTCCACTCA+GGG	+	chr1_3:20482729-20482748	None:intergenic	30.0%
	TCTTACATCCCTTATTGAAA+GGG	+	chr1_3:20482752-20482771	None:intergenic	30.0%
	ACTTGACTCTGTAACTTTAA+AGG	+	chr1_3:20482927-20482946	None:intergenic	30.0%
	ATTTGTACACATTGAGCATA+TGG	+	chr1_3:20483078-20483097	None:intergenic	30.0%
	TCAATGTGTACAAATGAAGT+TGG	-	chr1_3:20483083-20483102	Msa0108850:intron	30.0%
	AAATGGTTGTGCAATCAAAA+GGG	-	chr1_3:20483116-20483135	Msa0108850:CDS	30.0%
	AGCAGTTGTATTTGGAAAAA+TGG	-	chr1_3:20483174-20483193	Msa0108850:CDS	30.0%
	ATCTTAGAATCATTTCTTGG+AGG	+	chr1_3:20483206-20483225	None:intergenic	30.0%
!!	AAGTCTTATTGTAATATCCG+AGG	-	chr1_3:20483343-20483362	Msa0108850:intron	30.0%
	TACCTGCCAAAACAAAATTG+AGG	-	chr1_3:20481312-20481331	Msa0108850:three_prime_UTR	35.0%
	TGCCAAAACAAAATTGAGGT+CGG	-	chr1_3:20481316-20481335	Msa0108850:three_prime_UTR	35.0%
!!	TACCGACCTCAATTTTGTTT+TGG	+	chr1_3:20481321-20481340	None:intergenic	35.0%
	AGAAAATTGGACCCTACTAA+TGG	+	chr1_3:20481432-20481451	None:intergenic	35.0%
	AAGTTTAAGGAGCTTCTTTG+GGG	+	chr1_3:20481503-20481522	None:intergenic	35.0%
	GAAGTTTAAGGAGCTTCTTT+GGG	+	chr1_3:20481504-20481523	None:intergenic	35.0%
	TGAAGTTTAAGGAGCTTCTT+TGG	+	chr1_3:20481505-20481524	None:intergenic	35.0%
	GGCATGGATAATAATGTTCT+TGG	-	chr1_3:20481556-20481575	Msa0108850:CDS	35.0%
	CCAATGTTGACAACAACATA+AGG	+	chr1_3:20481646-20481665	None:intergenic	35.0%
	CCTTATGTTGTTGTCAACAT+TGG	-	chr1_3:20481643-20481662	Msa0108850:CDS	35.0%
	TCATGATTCCGTCAAAATCA+CGG	-	chr1_3:20481881-20481900	Msa0108850:intron	35.0%
!	TGAACCATACCATAAGGTTT+TGG	+	chr1_3:20481994-20482013	None:intergenic	35.0%
	AAAAGCTGAACCATACCATA+AGG	+	chr1_3:20482000-20482019	None:intergenic	35.0%
!!	CACATATTCCTTTTGGTCTT+TGG	-	chr1_3:20482093-20482112	Msa0108850:intron	35.0%
	GAACAAAGACCAAAAACGAA+AGG	-	chr1_3:20482241-20482260	Msa0108850:intron	35.0%
	TAATGGTTCGTATGTGTGTT+TGG	-	chr1_3:20482415-20482434	Msa0108850:intron	35.0%
	GTTAATTCTTCATTCCACTC+AGG	+	chr1_3:20482730-20482749	None:intergenic	35.0%
	CTCTTACATCCCTTATTGAA+AGG	+	chr1_3:20482753-20482772	None:intergenic	35.0%
	AAAACTAGCTCCATCTAACT+TGG	-	chr1_3:20482793-20482812	Msa0108850:intron	35.0%
!!	TTTTTGTTTCTCTTCGCAGA+CGG	-	chr1_3:20482990-20483009	Msa0108850:intron	35.0%
	AAGTTGGATACTCTTCCAAA+TGG	-	chr1_3:20483099-20483118	Msa0108850:intron	35.0%
!!	CTTTTGATTGCACAACCATT+TGG	+	chr1_3:20483117-20483136	None:intergenic	35.0%
	CAAATGGTTGTGCAATCAAA+AGG	-	chr1_3:20483115-20483134	Msa0108850:CDS	35.0%
	TCAAAAGGGTTCAAGCAAAT+AGG	-	chr1_3:20483130-20483149	Msa0108850:CDS	35.0%
	AGATTGAGAAATGTTGAGAG+TGG	-	chr1_3:20483222-20483241	Msa0108850:exon	35.0%
	AAATGTTGAGAGTGGAGAAT+TGG	-	chr1_3:20483230-20483249	Msa0108850:exon	35.0%
	AATTGGTTGTGGAAATTGAG+TGG	-	chr1_3:20483247-20483266	Msa0108850:five_prime_UTR	35.0%
	ATTGGTTGTGGAAATTGAGT+GGG	-	chr1_3:20483248-20483267	Msa0108850:five_prime_UTR	35.0%
	TAGTCGTTTGATTCATGCAT+TGG	+	chr1_3:20483370-20483389	None:intergenic	35.0%
	TACCTGCCAAAACAAAATTG+AGG	-	chr1_3:20481312-20481331	Msa0108850:three_prime_UTR	35.0%
	TGCCAAAACAAAATTGAGGT+CGG	-	chr1_3:20481316-20481335	Msa0108850:three_prime_UTR	35.0%
!!	TACCGACCTCAATTTTGTTT+TGG	+	chr1_3:20481321-20481340	None:intergenic	35.0%
	AGAAAATTGGACCCTACTAA+TGG	+	chr1_3:20481432-20481451	None:intergenic	35.0%
	AAGTTTAAGGAGCTTCTTTG+GGG	+	chr1_3:20481503-20481522	None:intergenic	35.0%
	GAAGTTTAAGGAGCTTCTTT+GGG	+	chr1_3:20481504-20481523	None:intergenic	35.0%
	TGAAGTTTAAGGAGCTTCTT+TGG	+	chr1_3:20481505-20481524	None:intergenic	35.0%
	GGCATGGATAATAATGTTCT+TGG	-	chr1_3:20481556-20481575	Msa0108850:CDS	35.0%
	CCAATGTTGACAACAACATA+AGG	+	chr1_3:20481646-20481665	None:intergenic	35.0%
	CCTTATGTTGTTGTCAACAT+TGG	-	chr1_3:20481643-20481662	Msa0108850:CDS	35.0%
	TCATGATTCCGTCAAAATCA+CGG	-	chr1_3:20481881-20481900	Msa0108850:intron	35.0%
!	TGAACCATACCATAAGGTTT+TGG	+	chr1_3:20481994-20482013	None:intergenic	35.0%
	AAAAGCTGAACCATACCATA+AGG	+	chr1_3:20482000-20482019	None:intergenic	35.0%
!!	CACATATTCCTTTTGGTCTT+TGG	-	chr1_3:20482093-20482112	Msa0108850:intron	35.0%
	GAACAAAGACCAAAAACGAA+AGG	-	chr1_3:20482241-20482260	Msa0108850:intron	35.0%
	TAATGGTTCGTATGTGTGTT+TGG	-	chr1_3:20482415-20482434	Msa0108850:intron	35.0%
	GTTAATTCTTCATTCCACTC+AGG	+	chr1_3:20482730-20482749	None:intergenic	35.0%
	CTCTTACATCCCTTATTGAA+AGG	+	chr1_3:20482753-20482772	None:intergenic	35.0%
	AAAACTAGCTCCATCTAACT+TGG	-	chr1_3:20482793-20482812	Msa0108850:intron	35.0%
!!	TTTTTGTTTCTCTTCGCAGA+CGG	-	chr1_3:20482990-20483009	Msa0108850:intron	35.0%
	AAGTTGGATACTCTTCCAAA+TGG	-	chr1_3:20483099-20483118	Msa0108850:intron	35.0%
!!	CTTTTGATTGCACAACCATT+TGG	+	chr1_3:20483117-20483136	None:intergenic	35.0%
	CAAATGGTTGTGCAATCAAA+AGG	-	chr1_3:20483115-20483134	Msa0108850:CDS	35.0%
	TCAAAAGGGTTCAAGCAAAT+AGG	-	chr1_3:20483130-20483149	Msa0108850:CDS	35.0%
	AGATTGAGAAATGTTGAGAG+TGG	-	chr1_3:20483222-20483241	Msa0108850:exon	35.0%
	AAATGTTGAGAGTGGAGAAT+TGG	-	chr1_3:20483230-20483249	Msa0108850:exon	35.0%
	AATTGGTTGTGGAAATTGAG+TGG	-	chr1_3:20483247-20483266	Msa0108850:five_prime_UTR	35.0%
	ATTGGTTGTGGAAATTGAGT+GGG	-	chr1_3:20483248-20483267	Msa0108850:five_prime_UTR	35.0%
	TAGTCGTTTGATTCATGCAT+TGG	+	chr1_3:20483370-20483389	None:intergenic	35.0%
	TTGCGATCTAGCAACTATGT+AGG	-	chr1_3:20481237-20481256	Msa0108850:three_prime_UTR	40.0%
	TGCGATCTAGCAACTATGTA+GGG	-	chr1_3:20481238-20481257	Msa0108850:three_prime_UTR	40.0%
	TCTAGCAACTATGTAGGGAT+AGG	-	chr1_3:20481243-20481262	Msa0108850:three_prime_UTR	40.0%
!!!	GACCTCAATTTTGTTTTGGC+AGG	+	chr1_3:20481317-20481336	None:intergenic	40.0%
	AGTTTAAGGAGCTTCTTTGG+GGG	+	chr1_3:20481502-20481521	None:intergenic	40.0%
!	ATCCGTTTGGCAAGTCATTT+TGG	-	chr1_3:20481532-20481551	Msa0108850:CDS	40.0%
!	CTCCAAAATGACTTGCCAAA+CGG	+	chr1_3:20481537-20481556	None:intergenic	40.0%
	TGTCAACATTGGTCATGAAC+AGG	-	chr1_3:20481654-20481673	Msa0108850:CDS	40.0%
	CATGATTCCGTCAAAATCAC+GGG	-	chr1_3:20481882-20481901	Msa0108850:intron	40.0%
	ATGATTCCGTCAAAATCACG+GGG	-	chr1_3:20481883-20481902	Msa0108850:intron	40.0%
!	CAAAAACCCCGTGATTTTGA+CGG	+	chr1_3:20481892-20481911	None:intergenic	40.0%
!	TTTGGTGGCAACACACATAA+TGG	-	chr1_3:20482398-20482417	Msa0108850:intron	40.0%
	AAAACAATTGCAACCCTGAG+TGG	-	chr1_3:20482713-20482732	Msa0108850:intron	40.0%
	TGTAAGAGTTCCAATACGTC+TGG	-	chr1_3:20482765-20482784	Msa0108850:intron	40.0%
!	GTTTTGCTTACCAGACGTAT+TGG	+	chr1_3:20482778-20482797	None:intergenic	40.0%
	GTAATGCATGCCAAGTTAGA+TGG	+	chr1_3:20482806-20482825	None:intergenic	40.0%
	CTGAAGAGAGCAGTTGTATT+TGG	-	chr1_3:20483166-20483185	Msa0108850:CDS	40.0%
	CAGGTTGCAAAGGTCTATTA+GGG	-	chr1_3:20483280-20483299	Msa0108850:five_prime_UTR	40.0%
	AGGTTGCAAAGGTCTATTAG+GGG	-	chr1_3:20483281-20483300	Msa0108850:five_prime_UTR	40.0%
	TTGATTCATGCATTGGACCT+CGG	+	chr1_3:20483363-20483382	None:intergenic	40.0%
	TTGCGATCTAGCAACTATGT+AGG	-	chr1_3:20481237-20481256	Msa0108850:three_prime_UTR	40.0%
	TGCGATCTAGCAACTATGTA+GGG	-	chr1_3:20481238-20481257	Msa0108850:three_prime_UTR	40.0%
	TCTAGCAACTATGTAGGGAT+AGG	-	chr1_3:20481243-20481262	Msa0108850:three_prime_UTR	40.0%
!!!	GACCTCAATTTTGTTTTGGC+AGG	+	chr1_3:20481317-20481336	None:intergenic	40.0%
	AGTTTAAGGAGCTTCTTTGG+GGG	+	chr1_3:20481502-20481521	None:intergenic	40.0%
!	ATCCGTTTGGCAAGTCATTT+TGG	-	chr1_3:20481532-20481551	Msa0108850:CDS	40.0%
!	CTCCAAAATGACTTGCCAAA+CGG	+	chr1_3:20481537-20481556	None:intergenic	40.0%
	TGTCAACATTGGTCATGAAC+AGG	-	chr1_3:20481654-20481673	Msa0108850:CDS	40.0%
	CATGATTCCGTCAAAATCAC+GGG	-	chr1_3:20481882-20481901	Msa0108850:intron	40.0%
	ATGATTCCGTCAAAATCACG+GGG	-	chr1_3:20481883-20481902	Msa0108850:intron	40.0%
!	CAAAAACCCCGTGATTTTGA+CGG	+	chr1_3:20481892-20481911	None:intergenic	40.0%
!	TTTGGTGGCAACACACATAA+TGG	-	chr1_3:20482398-20482417	Msa0108850:intron	40.0%
	AAAACAATTGCAACCCTGAG+TGG	-	chr1_3:20482713-20482732	Msa0108850:intron	40.0%
	TGTAAGAGTTCCAATACGTC+TGG	-	chr1_3:20482765-20482784	Msa0108850:intron	40.0%
!	GTTTTGCTTACCAGACGTAT+TGG	+	chr1_3:20482778-20482797	None:intergenic	40.0%
	GTAATGCATGCCAAGTTAGA+TGG	+	chr1_3:20482806-20482825	None:intergenic	40.0%
	CTGAAGAGAGCAGTTGTATT+TGG	-	chr1_3:20483166-20483185	Msa0108850:CDS	40.0%
	CAGGTTGCAAAGGTCTATTA+GGG	-	chr1_3:20483280-20483299	Msa0108850:five_prime_UTR	40.0%
	AGGTTGCAAAGGTCTATTAG+GGG	-	chr1_3:20483281-20483300	Msa0108850:five_prime_UTR	40.0%
	TTGATTCATGCATTGGACCT+CGG	+	chr1_3:20483363-20483382	None:intergenic	40.0%
	CAACTATGTAGGGATAGGAG+AGG	-	chr1_3:20481248-20481267	Msa0108850:three_prime_UTR	45.0%
!!	CGTTTGGCAAGTCATTTTGG+AGG	-	chr1_3:20481535-20481554	Msa0108850:CDS	45.0%
	ACAGAACGCCAAAGACCAAA+AGG	+	chr1_3:20482104-20482123	None:intergenic	45.0%
	TTTCTCCGTCGACGACAAAA+TGG	-	chr1_3:20483029-20483048	Msa0108850:intron	45.0%
	TTCTCCGTCGACGACAAAAT+GGG	-	chr1_3:20483030-20483049	Msa0108850:intron	45.0%
!	ATCACCCATTTTGTCGTCGA+CGG	+	chr1_3:20483037-20483056	None:intergenic	45.0%
	TACAACTGCTCTCTTCAGCA+AGG	+	chr1_3:20483164-20483183	None:intergenic	45.0%
	TGAGAGTGGAGAATTGGTTG+TGG	-	chr1_3:20483236-20483255	Msa0108850:five_prime_UTR	45.0%
	CCTAATAGACCTTTGCAACC+TGG	+	chr1_3:20483282-20483301	None:intergenic	45.0%
	CCAGGTTGCAAAGGTCTATT+AGG	-	chr1_3:20483279-20483298	Msa0108850:five_prime_UTR	45.0%
	CAACTATGTAGGGATAGGAG+AGG	-	chr1_3:20481248-20481267	Msa0108850:three_prime_UTR	45.0%
!!	CGTTTGGCAAGTCATTTTGG+AGG	-	chr1_3:20481535-20481554	Msa0108850:CDS	45.0%
	ACAGAACGCCAAAGACCAAA+AGG	+	chr1_3:20482104-20482123	None:intergenic	45.0%
	TTTCTCCGTCGACGACAAAA+TGG	-	chr1_3:20483029-20483048	Msa0108850:intron	45.0%
	TTCTCCGTCGACGACAAAAT+GGG	-	chr1_3:20483030-20483049	Msa0108850:intron	45.0%
!	ATCACCCATTTTGTCGTCGA+CGG	+	chr1_3:20483037-20483056	None:intergenic	45.0%
	TACAACTGCTCTCTTCAGCA+AGG	+	chr1_3:20483164-20483183	None:intergenic	45.0%
	TGAGAGTGGAGAATTGGTTG+TGG	-	chr1_3:20483236-20483255	Msa0108850:five_prime_UTR	45.0%
	CCTAATAGACCTTTGCAACC+TGG	+	chr1_3:20483282-20483301	None:intergenic	45.0%
	CCAGGTTGCAAAGGTCTATT+AGG	-	chr1_3:20483279-20483298	Msa0108850:five_prime_UTR	45.0%
!!	CTTTATATAATAAATAATTT+AGG	+	chr1_3:20483406-20483425	None:intergenic	5.0%
!!	CTTTATATAATAAATAATTT+AGG	+	chr1_3:20483406-20483425	None:intergenic	5.0%
!!	GGCAAGTCATTTTGGAGGCA+TGG	-	chr1_3:20481540-20481559	Msa0108850:CDS	50.0%
	GACAACAACATAAGGGTCGC+TGG	+	chr1_3:20481638-20481657	None:intergenic	50.0%
	TTGCAGAATCATCGTGTGCC+CGG	-	chr1_3:20481806-20481825	Msa0108850:intron	50.0%
	GGTTGTGGAAATTGAGTGGG+TGG	-	chr1_3:20483251-20483270	Msa0108850:five_prime_UTR	50.0%
	ATTGAGTGGGTGGATGTTCC+AGG	-	chr1_3:20483261-20483280	Msa0108850:five_prime_UTR	50.0%
	GTGGATGTTCCAGGTTGCAA+AGG	-	chr1_3:20483270-20483289	Msa0108850:five_prime_UTR	50.0%
!!	GGCAAGTCATTTTGGAGGCA+TGG	-	chr1_3:20481540-20481559	Msa0108850:CDS	50.0%
	GACAACAACATAAGGGTCGC+TGG	+	chr1_3:20481638-20481657	None:intergenic	50.0%
	TTGCAGAATCATCGTGTGCC+CGG	-	chr1_3:20481806-20481825	Msa0108850:intron	50.0%
	GGTTGTGGAAATTGAGTGGG+TGG	-	chr1_3:20483251-20483270	Msa0108850:five_prime_UTR	50.0%
	ATTGAGTGGGTGGATGTTCC+AGG	-	chr1_3:20483261-20483280	Msa0108850:five_prime_UTR	50.0%
	GTGGATGTTCCAGGTTGCAA+AGG	-	chr1_3:20483270-20483289	Msa0108850:five_prime_UTR	50.0%

Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	20481218	20483572	20481218	ID=Msa0108850;Name=Msa0108850
chr1_3	mRNA	20481218	20483572	20481218	ID=Msa0108850-mRNA-1;Parent=Msa0108850;Name=Msa0108850-mRNA-1;_AED=0.00;_eAED=0.00;_QI=320\|1\|1\|1\|0.66\|0.5\|4\|258\|172
chr1_3	exon	20481218	20481781	20481218	ID=Msa0108850-mRNA-1:exon:7395;Parent=Msa0108850-mRNA-1
chr1_3	exon	20482004	20482099	20482004	ID=Msa0108850-mRNA-1:exon:7394;Parent=Msa0108850-mRNA-1
chr1_3	exon	20483115	20483351	20483115	ID=Msa0108850-mRNA-1:exon:7393;Parent=Msa0108850-mRNA-1
chr1_3	exon	20483373	20483572	20483373	ID=Msa0108850-mRNA-1:exon:7392;Parent=Msa0108850-mRNA-1
chr1_3	five_prime_UTR	20483373	20483572	20483373	ID=Msa0108850-mRNA-1:five_prime_utr;Parent=Msa0108850-mRNA-1
chr1_3	five_prime_UTR	20483232	20483351	20483232	ID=Msa0108850-mRNA-1:five_prime_utr;Parent=Msa0108850-mRNA-1
chr1_3	CDS	20483115	20483231	20483115	ID=Msa0108850-mRNA-1:cds;Parent=Msa0108850-mRNA-1
chr1_3	CDS	20482004	20482099	20482004	ID=Msa0108850-mRNA-1:cds;Parent=Msa0108850-mRNA-1
chr1_3	CDS	20481476	20481781	20481476	ID=Msa0108850-mRNA-1:cds;Parent=Msa0108850-mRNA-1
chr1_3	three_prime_UTR	20481218	20481475	20481218	ID=Msa0108850-mRNA-1:three_prime_utr;Parent=Msa0108850-mRNA-1

Gene Sequence

>Msa0108850

ATGGATAATAATGTTCTTGGTCTTCTAAAACTTCGTATTAAAAGAGGTATTAATCTTGCAATTCGTGATTCTAATTCCAGCGACCCTTATGTTGTTGTCAACATTGGTCATGAACAGAAGTTGAAGACTCGTGTAGTGAAAAACAATTGCAACCCTGAGTGGAATGAAGAATTAACCCTTTCAATAAGGGATGTAAGAGTTCCAATACGTCTGACGGTTTTTGACAAAGACACTTTCTCCGTCGACGACAAAATGGGTGATGCAGAAATAGACTTGAAACCATATGCTCAATGTGTACAAATGAAGTTGGATACTCTTCCAAATGGTTGTGCAATCAAAAGGGTTCAAGCAAATAGGACTAACTGCCTTGCTGAAGAGAGCAGTTGTATTTGGAAAAATGGAAAAGTCCTCCAAGAAATGATTCTAAGATTGAGAAATGTTGAGAGTGGAGAATTGGTTGTGGAAATTGAGTGGGTGGATGTTCCAGGTTGCAAAGGTCTATTAGGGGCACAAATATAA

Protein sequence

>Msa0108850

MDNNVLGLLKLRIKRGINLAIRDSNSSDPYVVVNIGHEQKLKTRVVKNNCNPEWNEELTLSIRDVRVPIRLTVFDKDTFSVDDKMGDAEIDLKPYAQCVQMKLDTLPNGCAIKRVQANRTNCLAEESSCIWKNGKVLQEMILRLRNVESGELVVEIEWVDVPGCKGLLGAQI*