AlfalfaGEDB | Msa0507940

M. sativa cultivar zhongmu-4 / Msa0507940

KEGG: K16283
GO: GO:0000209 GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010498 GO:0010646 GO:0010647 GO:0012505 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023056 GO:0030163 GO:0031984 GO:0032446 GO:0033993 GO:0036211 GO:0042175 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0097305 GO:0098827 GO:0140096 GO:1901419 GO:1901421 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1905957 GO:1905959
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0507940	XP_024635085.1	100.000	98	0	0	1	98	1	98	1.02e-62	201

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0507940	sp\|Q9M2S6\|SDIR1_ARATH	84.337	83	12	1	1	82	1	83	2.90e-44	147

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0507940	A0A072UZ54	100.000	98	0	0	1	98	1	98	5.04e-63	201

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0005000	Msa0507940	-0.807288	5.438704e-50	-8.615850e-47
Msa0053050	Msa0507940	-0.800115	1.676449e-48	-8.615850e-47
Msa0098390	Msa0507940	-0.806973	6.341060e-50	-8.615850e-47
Msa0410290	Msa0507940	0.838826	2.283042e-57	-8.615850e-47
Msa0301810	Msa0507940	0.800566	1.357033e-48	-8.615850e-47
Msa0507940	Msa0724950	0.805564	1.256213e-49	-8.615850e-47
Msa0507940	Msa0747720	-0.810041	1.403712e-50	-8.615850e-47
Msa0507940	Msa0820890	0.827872	1.230373e-54	-8.615850e-47
Msa0507940	Msa1338250	0.816544	5.234725e-52	-8.615850e-47
Msa0507940	Msa1393800	0.803890	2.808918e-49	-8.615850e-47
Msa0507940	Msa1422840	0.818508	1.889578e-52	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0507940	MtrunA17_Chr3g0112041	100.000	98	0	1	98	1	98	9.70e-67	201
Msa0507940	MtrunA17_Chr4g0031911	57.143	98	42	1	98	1	98	1.16e-27	101
Msa0507940	MtrunA17_Chr4g0031921	57.143	98	42	1	98	1	98	1.63e-27	100

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0507940	AT3G55530.1	84.337	83	12	1	1	82	1	83	2.95e-45	147

Find 29 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GCAAGAGCTGATATAGAAAA+TGG	0.205583	3_4:-55610988	Msa0507940:CDS
GGCTGCTGCTGCATGAGCTT+GGG	0.225768	3_4:+55610444	None:intergenic
GAAGACCTTACCAGAAAATT+TGG	0.231832	3_4:+55610639	None:intergenic
TGGCTGCTGCTGCATGAGCT+TGG	0.233454	3_4:+55610443	None:intergenic
GATATAGAAAATGGGTTTCC+AGG	0.336999	3_4:-55610979	Msa0507940:CDS
ATCTGATCGGAAACGGAGTT+TGG	0.342721	3_4:+55612124	None:intergenic
ATCTGATCTTCTTCGCTCTC+TGG	0.349493	3_4:+55612165	None:intergenic
TATTTGATATTTCAGAATAT+CGG	0.383826	3_4:-55611101	Msa0507940:intron
AACTTGAATTAAAACTTCAT+AGG	0.392308	3_4:+55611039	None:intergenic
CCAGAAAATTTGGTGACATC+TGG	0.401145	3_4:+55610649	None:intergenic
ATTCTGTTTGCAGCTCTGGC+TGG	0.419069	3_4:-55610536	Msa0507940:intron
AGTTCAGTATCATGAATAAC+AGG	0.423414	3_4:+55610676	None:intergenic
CGCCTCTCAGGTATAAATCC+TGG	0.433691	3_4:+55610961	None:intergenic
TTGCAGCTCTGGCTGGTGCT+TGG	0.435630	3_4:-55610529	Msa0507940:intron
CATACCAATGCACGCCTCTC+AGG	0.446355	3_4:+55610949	None:intergenic
ATTCGATTCGATTCGATTCG+AGG	0.450301	3_4:+55612188	None:intergenic
CAAGAGCTGATATAGAAAAT+GGG	0.500384	3_4:-55610987	Msa0507940:CDS
AGGTTGAAGATCACGAGAAT+CGG	0.508685	3_4:+55612208	None:intergenic
TCTTGATGGCTACAATGCTA+AGG	0.511885	3_4:-55610501	Msa0507940:CDS
AAGCTGAATCTGATCGGAAA+CGG	0.513031	3_4:+55612117	None:intergenic
GCTCATGCAGCAGCAGCCAG+TGG	0.529345	3_4:-55610439	Msa0507940:CDS
TATACCTGAGAGGCGTGCAT+TGG	0.542114	3_4:-55610953	Msa0507940:intron
GTGAGTGAGTTGGAATTACT+AGG	0.546777	3_4:+55610823	None:intergenic
TACGAGAAAAGTGAGTGAGT+TGG	0.568555	3_4:+55610813	None:intergenic
GAACAAAAGCTGAATCTGAT+CGG	0.586775	3_4:+55612111	None:intergenic
TGATATTTCAGAATATCGGA+AGG	0.617574	3_4:-55611097	Msa0507940:intron
TTCCAGGATTTATACCTGAG+AGG	0.618398	3_4:-55610963	Msa0507940:CDS
TCTTGGTTCGGTAAAATGCA+TGG	0.662796	3_4:+55612282	None:intergenic
GAGACTTACGGAAATTGACG+AGG	0.732054	3_4:+55612089	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	GTATACTCTATATAATTATT+TGG	-	chr3_4:55611489-55611508	Msa0507940:intron	15.0%
!!	TATTTGATATTTCAGAATAT+CGG	-	chr3_4:55611624-55611643	Msa0507940:intron	15.0%
!!	GTATACTCTATATAATTATT+TGG	-	chr3_4:55611489-55611508	Msa0507940:intron	15.0%
!!	TATTTGATATTTCAGAATAT+CGG	-	chr3_4:55611624-55611643	Msa0507940:intron	15.0%
!!!	GCGATTTTAAGATTTAATTA+GGG	-	chr3_4:55610791-55610810	Msa0507940:intron	20.0%
!!	AGTTTATTATGAATAATCTG+CGG	-	chr3_4:55610824-55610843	Msa0507940:CDS	20.0%
!!!	TGTTTGATTATGTTAGTTTA+TGG	-	chr3_4:55611188-55611207	Msa0507940:intron	20.0%
!!!	TTCTGAAATATCAAATAAGA+TGG	+	chr3_4:55611621-55611640	None:intergenic	20.0%
!!	AACTTGAATTAAAACTTCAT+AGG	+	chr3_4:55611689-55611708	None:intergenic	20.0%
!!	ATCAGTACAAAATAATACAT+TGG	+	chr3_4:55611847-55611866	None:intergenic	20.0%
!!!	AAATGATACACATTTTATCA+AGG	-	chr3_4:55612120-55612139	Msa0507940:five_prime_UTR	20.0%
!!!	GCGATTTTAAGATTTAATTA+GGG	-	chr3_4:55610791-55610810	Msa0507940:intron	20.0%
!!	AGTTTATTATGAATAATCTG+CGG	-	chr3_4:55610824-55610843	Msa0507940:CDS	20.0%
!!!	TGTTTGATTATGTTAGTTTA+TGG	-	chr3_4:55611188-55611207	Msa0507940:intron	20.0%
!!!	TTCTGAAATATCAAATAAGA+TGG	+	chr3_4:55611621-55611640	None:intergenic	20.0%
!!	AACTTGAATTAAAACTTCAT+AGG	+	chr3_4:55611689-55611708	None:intergenic	20.0%
!!	ATCAGTACAAAATAATACAT+TGG	+	chr3_4:55611847-55611866	None:intergenic	20.0%
!!!	AAATGATACACATTTTATCA+AGG	-	chr3_4:55612120-55612139	Msa0507940:five_prime_UTR	20.0%
!	GATGAAATTGAAAATGGAAT+TGG	+	chr3_4:55610691-55610710	None:intergenic	25.0%
!!!	CGCGATTTTAAGATTTAATT+AGG	-	chr3_4:55610790-55610809	Msa0507940:intron	25.0%
!!!	ATTTTGAGGAAAATGGTTTA+AGG	-	chr3_4:55610956-55610975	Msa0507940:CDS	25.0%
!!!	TTAGTGTTTTGTTTGATTAG+AGG	-	chr3_4:55610995-55611014	Msa0507940:CDS	25.0%
!	TATGATACTTGCATAATGAA+TGG	-	chr3_4:55611039-55611058	Msa0507940:five_prime_UTR	25.0%
!	ATGATACTTGCATAATGAAT+GGG	-	chr3_4:55611040-55611059	Msa0507940:five_prime_UTR	25.0%
!	TTTGTAAGGAAAATGGTTTA+AGG	-	chr3_4:55611145-55611164	Msa0507940:intron	25.0%
!	TTAGGGATTAAAATTAGAGT+AGG	-	chr3_4:55611225-55611244	Msa0507940:intron	25.0%
!!!	AAAAATCTTCCCCTTATTTT+AGG	+	chr3_4:55611274-55611293	None:intergenic	25.0%
!!	AGAATAACAGAAATGTGTTT+TGG	-	chr3_4:55611353-55611372	Msa0507940:intron	25.0%
!!!	AGAAATGTGTTTTGGATATT+AGG	-	chr3_4:55611361-55611380	Msa0507940:intron	25.0%
!	AAGAATAGTTAAGAAAACGT+TGG	+	chr3_4:55611388-55611407	None:intergenic	25.0%
!!!	AAGGTTTTAGTTATTGATTC+TGG	-	chr3_4:55611647-55611666	Msa0507940:intron	25.0%
!	GATGAAATTGAAAATGGAAT+TGG	+	chr3_4:55610691-55610710	None:intergenic	25.0%
!!!	CGCGATTTTAAGATTTAATT+AGG	-	chr3_4:55610790-55610809	Msa0507940:intron	25.0%
!!!	ATTTTGAGGAAAATGGTTTA+AGG	-	chr3_4:55610956-55610975	Msa0507940:CDS	25.0%
!!!	TTAGTGTTTTGTTTGATTAG+AGG	-	chr3_4:55610995-55611014	Msa0507940:CDS	25.0%
!	TATGATACTTGCATAATGAA+TGG	-	chr3_4:55611039-55611058	Msa0507940:five_prime_UTR	25.0%
!	ATGATACTTGCATAATGAAT+GGG	-	chr3_4:55611040-55611059	Msa0507940:five_prime_UTR	25.0%
!	TTTGTAAGGAAAATGGTTTA+AGG	-	chr3_4:55611145-55611164	Msa0507940:intron	25.0%
!	TTAGGGATTAAAATTAGAGT+AGG	-	chr3_4:55611225-55611244	Msa0507940:intron	25.0%
!!!	AAAAATCTTCCCCTTATTTT+AGG	+	chr3_4:55611274-55611293	None:intergenic	25.0%
!!	AGAATAACAGAAATGTGTTT+TGG	-	chr3_4:55611353-55611372	Msa0507940:intron	25.0%
!!!	AGAAATGTGTTTTGGATATT+AGG	-	chr3_4:55611361-55611380	Msa0507940:intron	25.0%
!	AAGAATAGTTAAGAAAACGT+TGG	+	chr3_4:55611388-55611407	None:intergenic	25.0%
!!!	AAGGTTTTAGTTATTGATTC+TGG	-	chr3_4:55611647-55611666	Msa0507940:intron	25.0%
	GAAATTGAAAATGGAATTGG+TGG	+	chr3_4:55610688-55610707	None:intergenic	30.0%
	TGAGGAGATGAAATTGAAAA+TGG	+	chr3_4:55610697-55610716	None:intergenic	30.0%
	GAAAAATGTGAAAACATAGC+AGG	+	chr3_4:55610727-55610746	None:intergenic	30.0%
!	TTGATTTTTGCTGCATTTTG+AGG	-	chr3_4:55610942-55610961	Msa0507940:intron	30.0%
	ATGGTTTAAGGATCACTAAA+TGG	-	chr3_4:55610968-55610987	Msa0507940:CDS	30.0%
	CATACAACATTAACAAATCG+CGG	+	chr3_4:55611023-55611042	None:intergenic	30.0%
	AACACTTCAATTCCATTTAG+TGG	+	chr3_4:55611172-55611191	None:intergenic	30.0%
!	TATGTTAGTTTATGGCCATA+TGG	-	chr3_4:55611196-55611215	Msa0507940:intron	30.0%
	TGTTACTCATGCCTAAAATA+AGG	-	chr3_4:55611260-55611279	Msa0507940:intron	30.0%
	GTTACTCATGCCTAAAATAA+GGG	-	chr3_4:55611261-55611280	Msa0507940:intron	30.0%
	TTACTCATGCCTAAAATAAG+GGG	-	chr3_4:55611262-55611281	Msa0507940:intron	30.0%
!!	TCAGCATTGATGAAAATTCA+CGG	+	chr3_4:55611331-55611350	None:intergenic	30.0%
	GATTTCAGATAAGTGATGAT+AGG	-	chr3_4:55611446-55611465	Msa0507940:intron	30.0%
	TGATATTTCAGAATATCGGA+AGG	-	chr3_4:55611628-55611647	Msa0507940:intron	30.0%
	CAAGAGCTGATATAGAAAAT+GGG	-	chr3_4:55611738-55611757	Msa0507940:intron	30.0%
	TATACAGAGTAAGTTGTCAA+TGG	+	chr3_4:55612017-55612036	None:intergenic	30.0%
	AGTTCAGTATCATGAATAAC+AGG	+	chr3_4:55612052-55612071	None:intergenic	30.0%
	GAAATTGAAAATGGAATTGG+TGG	+	chr3_4:55610688-55610707	None:intergenic	30.0%
	TGAGGAGATGAAATTGAAAA+TGG	+	chr3_4:55610697-55610716	None:intergenic	30.0%
	GAAAAATGTGAAAACATAGC+AGG	+	chr3_4:55610727-55610746	None:intergenic	30.0%
!	TTGATTTTTGCTGCATTTTG+AGG	-	chr3_4:55610942-55610961	Msa0507940:intron	30.0%
	ATGGTTTAAGGATCACTAAA+TGG	-	chr3_4:55610968-55610987	Msa0507940:CDS	30.0%
	CATACAACATTAACAAATCG+CGG	+	chr3_4:55611023-55611042	None:intergenic	30.0%
	AACACTTCAATTCCATTTAG+TGG	+	chr3_4:55611172-55611191	None:intergenic	30.0%
!	TATGTTAGTTTATGGCCATA+TGG	-	chr3_4:55611196-55611215	Msa0507940:intron	30.0%
	TGTTACTCATGCCTAAAATA+AGG	-	chr3_4:55611260-55611279	Msa0507940:intron	30.0%
	GTTACTCATGCCTAAAATAA+GGG	-	chr3_4:55611261-55611280	Msa0507940:intron	30.0%
	TTACTCATGCCTAAAATAAG+GGG	-	chr3_4:55611262-55611281	Msa0507940:intron	30.0%
!!	TCAGCATTGATGAAAATTCA+CGG	+	chr3_4:55611331-55611350	None:intergenic	30.0%
	GATTTCAGATAAGTGATGAT+AGG	-	chr3_4:55611446-55611465	Msa0507940:intron	30.0%
	TGATATTTCAGAATATCGGA+AGG	-	chr3_4:55611628-55611647	Msa0507940:intron	30.0%
	CAAGAGCTGATATAGAAAAT+GGG	-	chr3_4:55611738-55611757	Msa0507940:intron	30.0%
	TATACAGAGTAAGTTGTCAA+TGG	+	chr3_4:55612017-55612036	None:intergenic	30.0%
	AGTTCAGTATCATGAATAAC+AGG	+	chr3_4:55612052-55612071	None:intergenic	30.0%
!	TTTTCGTATGTGTCTTGGTT+CGG	+	chr3_4:55610458-55610477	None:intergenic	35.0%
!	CGTATTTTTCGTATGTGTCT+TGG	+	chr3_4:55610463-55610482	None:intergenic	35.0%
	AGACACATACGAAAAATACG+TGG	-	chr3_4:55610463-55610482	Msa0507940:CDS	35.0%
	GAACAAAAGCTGAATCTGAT+CGG	+	chr3_4:55610617-55610636	None:intergenic	35.0%
!	AACATAGCAGGAACATTTTG+AGG	+	chr3_4:55610715-55610734	None:intergenic	35.0%
	ATCGTTTATCATGCTTGAAG+TGG	-	chr3_4:55610904-55610923	Msa0507940:intron	35.0%
	TTATCATGCTTGAAGTGGTT+TGG	-	chr3_4:55610909-55610928	Msa0507940:intron	35.0%
	TGCAGCAAAAATCAAAACCT+AGG	+	chr3_4:55610937-55610956	None:intergenic	35.0%
!!	TTGCTGCATTTTGAGGAAAA+TGG	-	chr3_4:55610949-55610968	Msa0507940:intron	35.0%
	TCGAAGATTACACAATTGCA+AGG	+	chr3_4:55611101-55611120	None:intergenic	35.0%
	TGGTGTGTTTGTAAGGAAAA+TGG	-	chr3_4:55611138-55611157	Msa0507940:intron	35.0%
	ATGGTTTAAGGACCACTAAA+TGG	-	chr3_4:55611157-55611176	Msa0507940:intron	35.0%
	AATCCCTAACAACTACCATA+TGG	+	chr3_4:55611214-55611233	None:intergenic	35.0%
	GATGATAGGTTTAGTATGTG+TGG	-	chr3_4:55611460-55611479	Msa0507940:intron	35.0%
	AATCACAGAGCGGATATAAT+CGG	+	chr3_4:55611541-55611560	None:intergenic	35.0%
	TCCTCGAAAAACAAAACTCA+TGG	+	chr3_4:55611717-55611736	None:intergenic	35.0%
	GCAAGAGCTGATATAGAAAA+TGG	-	chr3_4:55611737-55611756	Msa0507940:intron	35.0%
!	GATATAGAAAATGGGTTTCC+AGG	-	chr3_4:55611746-55611765	Msa0507940:intron	35.0%
	CATCGAAGAAAACACAGAAA+AGG	+	chr3_4:55611991-55612010	None:intergenic	35.0%
!!	TGTCACCAAATTTTCTGGTA+AGG	-	chr3_4:55612081-55612100	Msa0507940:intron	35.0%
	GAAGACCTTACCAGAAAATT+TGG	+	chr3_4:55612089-55612108	None:intergenic	35.0%
!	TTTTCGTATGTGTCTTGGTT+CGG	+	chr3_4:55610458-55610477	None:intergenic	35.0%
!	CGTATTTTTCGTATGTGTCT+TGG	+	chr3_4:55610463-55610482	None:intergenic	35.0%
	AGACACATACGAAAAATACG+TGG	-	chr3_4:55610463-55610482	Msa0507940:CDS	35.0%
	GAACAAAAGCTGAATCTGAT+CGG	+	chr3_4:55610617-55610636	None:intergenic	35.0%
!	AACATAGCAGGAACATTTTG+AGG	+	chr3_4:55610715-55610734	None:intergenic	35.0%
	ATCGTTTATCATGCTTGAAG+TGG	-	chr3_4:55610904-55610923	Msa0507940:intron	35.0%
	TTATCATGCTTGAAGTGGTT+TGG	-	chr3_4:55610909-55610928	Msa0507940:intron	35.0%
	TGCAGCAAAAATCAAAACCT+AGG	+	chr3_4:55610937-55610956	None:intergenic	35.0%
!!	TTGCTGCATTTTGAGGAAAA+TGG	-	chr3_4:55610949-55610968	Msa0507940:intron	35.0%
	TCGAAGATTACACAATTGCA+AGG	+	chr3_4:55611101-55611120	None:intergenic	35.0%
	TGGTGTGTTTGTAAGGAAAA+TGG	-	chr3_4:55611138-55611157	Msa0507940:intron	35.0%
	ATGGTTTAAGGACCACTAAA+TGG	-	chr3_4:55611157-55611176	Msa0507940:intron	35.0%
	AATCCCTAACAACTACCATA+TGG	+	chr3_4:55611214-55611233	None:intergenic	35.0%
	GATGATAGGTTTAGTATGTG+TGG	-	chr3_4:55611460-55611479	Msa0507940:intron	35.0%
	AATCACAGAGCGGATATAAT+CGG	+	chr3_4:55611541-55611560	None:intergenic	35.0%
	TCCTCGAAAAACAAAACTCA+TGG	+	chr3_4:55611717-55611736	None:intergenic	35.0%
	GCAAGAGCTGATATAGAAAA+TGG	-	chr3_4:55611737-55611756	Msa0507940:intron	35.0%
!	GATATAGAAAATGGGTTTCC+AGG	-	chr3_4:55611746-55611765	Msa0507940:intron	35.0%
	CATCGAAGAAAACACAGAAA+AGG	+	chr3_4:55611991-55612010	None:intergenic	35.0%
!!	TGTCACCAAATTTTCTGGTA+AGG	-	chr3_4:55612081-55612100	Msa0507940:intron	35.0%
	GAAGACCTTACCAGAAAATT+TGG	+	chr3_4:55612089-55612108	None:intergenic	35.0%
!!	TCTTGGTTCGGTAAAATGCA+TGG	+	chr3_4:55610446-55610465	None:intergenic	40.0%
	AGGTTGAAGATCACGAGAAT+CGG	+	chr3_4:55610520-55610539	None:intergenic	40.0%
!	ATTCGATTCGATTCGATTCG+AGG	+	chr3_4:55610540-55610559	None:intergenic	40.0%
	AAGCTGAATCTGATCGGAAA+CGG	+	chr3_4:55610611-55610630	None:intergenic	40.0%
	CATTTGGGAATGGAGACTTA+CGG	+	chr3_4:55610651-55610670	None:intergenic	40.0%
!!	TGAGAGAAAGCATTTGGGAA+TGG	+	chr3_4:55610661-55610680	None:intergenic	40.0%
	TTGCATAATGAATGGGTGCA+GGG	-	chr3_4:55611047-55611066	Msa0507940:five_prime_UTR	40.0%
!!	CGATAATGCTTGAAGCGTTT+TGG	-	chr3_4:55611118-55611137	Msa0507940:intron	40.0%
!!	AGCGTTTTGGTGTGTTTGTA+AGG	-	chr3_4:55611131-55611150	Msa0507940:intron	40.0%
	ATGGCCATATGGTAGTTGTT+AGG	-	chr3_4:55611207-55611226	Msa0507940:intron	40.0%
	TGGCCATATGGTAGTTGTTA+GGG	-	chr3_4:55611208-55611227	Msa0507940:intron	40.0%
	ATCACAGAGCGGATATAATC+GGG	+	chr3_4:55611540-55611559	None:intergenic	40.0%
	ATTCAACAGGAATCACAGAG+CGG	+	chr3_4:55611551-55611570	None:intergenic	40.0%
	GCTTGAGGATGAAATTCAAC+AGG	+	chr3_4:55611564-55611583	None:intergenic	40.0%
	CAACACTAAACACATGCTTG+AGG	+	chr3_4:55611579-55611598	None:intergenic	40.0%
!!!	GCCATGAGTTTTGTTTTTCG+AGG	-	chr3_4:55611713-55611732	Msa0507940:intron	40.0%
	TTCCAGGATTTATACCTGAG+AGG	-	chr3_4:55611762-55611781	Msa0507940:intron	40.0%
!	GTGAGTGAGTTGGAATTACT+AGG	+	chr3_4:55611905-55611924	None:intergenic	40.0%
	TACGAGAAAAGTGAGTGAGT+TGG	+	chr3_4:55611915-55611934	None:intergenic	40.0%
!!	TCACTCACTTTTCTCGTAAC+AGG	-	chr3_4:55611917-55611936	Msa0507940:intron	40.0%
!	CCAGAAAATTTGGTGACATC+TGG	+	chr3_4:55612079-55612098	None:intergenic	40.0%
!	CCAGATGTCACCAAATTTTC+TGG	-	chr3_4:55612076-55612095	Msa0507940:intron	40.0%
!	TCTTGATGGCTACAATGCTA+AGG	-	chr3_4:55612224-55612243	Msa0507940:five_prime_UTR	40.0%
!!	TCTTGGTTCGGTAAAATGCA+TGG	+	chr3_4:55610446-55610465	None:intergenic	40.0%
	AGGTTGAAGATCACGAGAAT+CGG	+	chr3_4:55610520-55610539	None:intergenic	40.0%
!	ATTCGATTCGATTCGATTCG+AGG	+	chr3_4:55610540-55610559	None:intergenic	40.0%
	AAGCTGAATCTGATCGGAAA+CGG	+	chr3_4:55610611-55610630	None:intergenic	40.0%
	CATTTGGGAATGGAGACTTA+CGG	+	chr3_4:55610651-55610670	None:intergenic	40.0%
!!	TGAGAGAAAGCATTTGGGAA+TGG	+	chr3_4:55610661-55610680	None:intergenic	40.0%
	TTGCATAATGAATGGGTGCA+GGG	-	chr3_4:55611047-55611066	Msa0507940:five_prime_UTR	40.0%
!!	CGATAATGCTTGAAGCGTTT+TGG	-	chr3_4:55611118-55611137	Msa0507940:intron	40.0%
!!	AGCGTTTTGGTGTGTTTGTA+AGG	-	chr3_4:55611131-55611150	Msa0507940:intron	40.0%
	ATGGCCATATGGTAGTTGTT+AGG	-	chr3_4:55611207-55611226	Msa0507940:intron	40.0%
	TGGCCATATGGTAGTTGTTA+GGG	-	chr3_4:55611208-55611227	Msa0507940:intron	40.0%
	ATCACAGAGCGGATATAATC+GGG	+	chr3_4:55611540-55611559	None:intergenic	40.0%
	ATTCAACAGGAATCACAGAG+CGG	+	chr3_4:55611551-55611570	None:intergenic	40.0%
	GCTTGAGGATGAAATTCAAC+AGG	+	chr3_4:55611564-55611583	None:intergenic	40.0%
	CAACACTAAACACATGCTTG+AGG	+	chr3_4:55611579-55611598	None:intergenic	40.0%
!!!	GCCATGAGTTTTGTTTTTCG+AGG	-	chr3_4:55611713-55611732	Msa0507940:intron	40.0%
	TTCCAGGATTTATACCTGAG+AGG	-	chr3_4:55611762-55611781	Msa0507940:intron	40.0%
!	GTGAGTGAGTTGGAATTACT+AGG	+	chr3_4:55611905-55611924	None:intergenic	40.0%
	TACGAGAAAAGTGAGTGAGT+TGG	+	chr3_4:55611915-55611934	None:intergenic	40.0%
!!	TCACTCACTTTTCTCGTAAC+AGG	-	chr3_4:55611917-55611936	Msa0507940:intron	40.0%
!	CCAGAAAATTTGGTGACATC+TGG	+	chr3_4:55612079-55612098	None:intergenic	40.0%
!	CCAGATGTCACCAAATTTTC+TGG	-	chr3_4:55612076-55612095	Msa0507940:intron	40.0%
!	TCTTGATGGCTACAATGCTA+AGG	-	chr3_4:55612224-55612243	Msa0507940:five_prime_UTR	40.0%
	ATCTGATCTTCTTCGCTCTC+TGG	+	chr3_4:55610563-55610582	None:intergenic	45.0%
	ATCTGATCGGAAACGGAGTT+TGG	+	chr3_4:55610604-55610623	None:intergenic	45.0%
	GAGACTTACGGAAATTGACG+AGG	+	chr3_4:55610639-55610658	None:intergenic	45.0%
!!	GCGTGTGAGAGAAAGCATTT+GGG	+	chr3_4:55610666-55610685	None:intergenic	45.0%
	CTTGCATAATGAATGGGTGC+AGG	-	chr3_4:55611046-55611065	Msa0507940:five_prime_UTR	45.0%
	GTTCATTCTGTTTGCAGCTC+TGG	-	chr3_4:55612185-55612204	Msa0507940:five_prime_UTR	45.0%
!!!	GGTGCTTGGTGTTTTCTTGA+TGG	-	chr3_4:55612210-55612229	Msa0507940:five_prime_UTR	45.0%
	ATCTGATCTTCTTCGCTCTC+TGG	+	chr3_4:55610563-55610582	None:intergenic	45.0%
	ATCTGATCGGAAACGGAGTT+TGG	+	chr3_4:55610604-55610623	None:intergenic	45.0%
	GAGACTTACGGAAATTGACG+AGG	+	chr3_4:55610639-55610658	None:intergenic	45.0%
!!	GCGTGTGAGAGAAAGCATTT+GGG	+	chr3_4:55610666-55610685	None:intergenic	45.0%
	CTTGCATAATGAATGGGTGC+AGG	-	chr3_4:55611046-55611065	Msa0507940:five_prime_UTR	45.0%
	GTTCATTCTGTTTGCAGCTC+TGG	-	chr3_4:55612185-55612204	Msa0507940:five_prime_UTR	45.0%
!!!	GGTGCTTGGTGTTTTCTTGA+TGG	-	chr3_4:55612210-55612229	Msa0507940:five_prime_UTR	45.0%
!!	GGCGTGTGAGAGAAAGCATT+TGG	+	chr3_4:55610667-55610686	None:intergenic	50.0%
!	CTTGAAGTGGTTTGGCTCCT+AGG	-	chr3_4:55610917-55610936	Msa0507940:intron	50.0%
	CGCCTCTCAGGTATAAATCC+TGG	+	chr3_4:55611767-55611786	None:intergenic	50.0%
!	TATACCTGAGAGGCGTGCAT+TGG	-	chr3_4:55611772-55611791	Msa0507940:intron	50.0%
!	ATTCTGTTTGCAGCTCTGGC+TGG	-	chr3_4:55612189-55612208	Msa0507940:five_prime_UTR	50.0%
!!	GGCGTGTGAGAGAAAGCATT+TGG	+	chr3_4:55610667-55610686	None:intergenic	50.0%
!	CTTGAAGTGGTTTGGCTCCT+AGG	-	chr3_4:55610917-55610936	Msa0507940:intron	50.0%
	CGCCTCTCAGGTATAAATCC+TGG	+	chr3_4:55611767-55611786	None:intergenic	50.0%
!	TATACCTGAGAGGCGTGCAT+TGG	-	chr3_4:55611772-55611791	Msa0507940:intron	50.0%
!	ATTCTGTTTGCAGCTCTGGC+TGG	-	chr3_4:55612189-55612208	Msa0507940:five_prime_UTR	50.0%
	CATACCAATGCACGCCTCTC+AGG	+	chr3_4:55611779-55611798	None:intergenic	55.0%
	CATACCAATGCACGCCTCTC+AGG	+	chr3_4:55611779-55611798	None:intergenic	55.0%
!	TTGCAGCTCTGGCTGGTGCT+TGG	-	chr3_4:55612196-55612215	Msa0507940:five_prime_UTR	60.0%
	GGCTGCTGCTGCATGAGCTT+GGG	+	chr3_4:55612284-55612303	None:intergenic	60.0%
	TGGCTGCTGCTGCATGAGCT+TGG	+	chr3_4:55612285-55612304	None:intergenic	60.0%
!	TTGCAGCTCTGGCTGGTGCT+TGG	-	chr3_4:55612196-55612215	Msa0507940:five_prime_UTR	60.0%
	GGCTGCTGCTGCATGAGCTT+GGG	+	chr3_4:55612284-55612303	None:intergenic	60.0%
	TGGCTGCTGCTGCATGAGCT+TGG	+	chr3_4:55612285-55612304	None:intergenic	60.0%
	GCTCATGCAGCAGCAGCCAG+TGG	-	chr3_4:55612286-55612305	Msa0507940:five_prime_UTR	65.0%
	GCTCATGCAGCAGCAGCCAG+TGG	-	chr3_4:55612286-55612305	Msa0507940:five_prime_UTR	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	55610438	55612309	55610438	ID=Msa0507940;Name=Msa0507940
chr3_4	mRNA	55610438	55612309	55610438	ID=Msa0507940-mRNA-1;Parent=Msa0507940;Name=Msa0507940-mRNA-1;_AED=0.00;_eAED=0.00;_QI=289\|1\|0.8\|1\|0.75\|0.6\|5\|0\|98
chr3_4	exon	55610438	55610545	55610438	ID=Msa0507940-mRNA-1:exon:12424;Parent=Msa0507940-mRNA-1
chr3_4	exon	55610650	55610702	55610650	ID=Msa0507940-mRNA-1:exon:12423;Parent=Msa0507940-mRNA-1
chr3_4	exon	55610809	55610863	55610809	ID=Msa0507940-mRNA-1:exon:12422;Parent=Msa0507940-mRNA-1
chr3_4	exon	55610954	55611108	55610954	ID=Msa0507940-mRNA-1:exon:12421;Parent=Msa0507940-mRNA-1
chr3_4	exon	55612098	55612309	55612098	ID=Msa0507940-mRNA-1:exon:12420;Parent=Msa0507940-mRNA-1
chr3_4	five_prime_UTR	55612098	55612309	55612098	ID=Msa0507940-mRNA-1:five_prime_utr;Parent=Msa0507940-mRNA-1
chr3_4	five_prime_UTR	55611032	55611108	55611032	ID=Msa0507940-mRNA-1:five_prime_utr;Parent=Msa0507940-mRNA-1
chr3_4	CDS	55610954	55611031	55610954	ID=Msa0507940-mRNA-1:cds;Parent=Msa0507940-mRNA-1
chr3_4	CDS	55610809	55610863	55610809	ID=Msa0507940-mRNA-1:cds;Parent=Msa0507940-mRNA-1
chr3_4	CDS	55610650	55610702	55610650	ID=Msa0507940-mRNA-1:cds;Parent=Msa0507940-mRNA-1
chr3_4	CDS	55610438	55610545	55610438	ID=Msa0507940-mRNA-1:cds;Parent=Msa0507940-mRNA-1

Gene Sequence	>Msa0507940 ATGAGTTTTGTTTTTCGAGGAGCAAGAGCTGATATAGAAAATGGGTTTCCAGGATTTATACCTGAGAGGCGTGCATTGCGTGTTCATGCAGCACGTCCTAGTAATTCCAACTCACTCACTTTTCTCGTAACAGTTCTCCTGTTATTCATGATACTGAACTCTCACCAGATGTCACCAAATTTTCTGCTCTGGCTGGTGCTTGGTGTTTTCTTGATGGCTACAATGCTAAGGATGTATGCAACATGTCAACAGCTTCAAGCACAAGCCCAAGCTCATGCAGCAGCAGCCAGTGGC
Protein sequence	>Msa0507940 MSFVFRGARADIENGFPGFIPERRALRVHAARPSNSNSLTFLVTVLLLFMILNSHQMSPNFLLWLVLGVFLMATMLRMYATCQQLQAQAQAHAAAASG