AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0151950


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0151950 MtrunA17_Chr1g0160811 97.093 172 5 0 1 172 1 172 5.38e-121 338
Msa0151950 MtrunA17_Chr4g0043861 65.644 163 55 1 4 166 3 164 3.75e-76 225
Msa0151950 MtrunA17_Chr3g0111361 62.346 162 60 1 4 165 3 163 7.17e-74 219
Msa0151950 MtrunA17_Chr2g0280981 58.537 164 67 1 4 167 2 164 4.46e-70 209
Msa0151950 MtrunA17_Chr8g0393081 58.537 164 67 1 4 167 19 181 1.03e-69 209
Msa0151950 MtrunA17_Chr6g0478401 55.488 164 72 1 4 167 15 177 9.72e-65 196
Msa0151950 MtrunA17_Chr8g0352751 43.226 155 86 2 6 159 5 158 3.36e-40 133
Msa0151950 MtrunA17_Chr8g0380381 44.937 158 85 2 5 161 88 244 7.30e-39 132
Msa0151950 MtrunA17_Chr3g0083541 42.949 156 87 2 5 159 242 396 2.98e-34 124
Msa0151950 MtrunA17_Chr2g0292461 42.405 158 89 2 5 161 171 327 4.02e-34 122
Msa0151950 MtrunA17_Chr2g0290631 42.282 149 83 2 6 152 5 152 1.17e-30 109
Msa0151950 MtrunA17_Chr2g0290721 34.118 85 54 2 9 92 3 86 1.23e-12 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0151950 AT1G70790.3 66.864 169 53 2 1 167 1 168 2.50e-80 236
Msa0151950 AT1G70790.2 66.864 169 53 2 1 167 1 168 2.50e-80 236
Msa0151950 AT1G70790.1 66.864 169 53 2 1 167 1 168 2.50e-80 236
Msa0151950 AT2G01540.1 60.355 169 64 2 1 167 1 168 6.78e-72 214
Msa0151950 AT1G70810.1 60.736 163 63 1 5 167 4 165 4.15e-70 209
Msa0151950 AT3G17980.1 56.364 165 71 1 3 167 14 177 1.69e-68 206
Msa0151950 AT1G48590.4 56.970 165 69 2 3 167 7 169 5.32e-67 202
Msa0151950 AT1G48590.1 56.970 165 69 2 3 167 7 169 5.32e-67 202
Msa0151950 AT1G48590.2 56.970 165 69 2 3 167 38 200 6.59e-67 202
Msa0151950 AT1G73580.1 54.545 165 74 1 3 167 5 168 4.74e-66 199
Msa0151950 AT1G23140.1 56.707 164 70 1 4 167 3 165 4.45e-64 194
Msa0151950 AT1G70790.4 70.769 130 36 1 40 167 2 131 1.68e-63 192
Msa0151950 AT1G66360.1 53.374 163 73 2 4 164 3 164 2.70e-62 190
Msa0151950 AT5G37740.1 51.497 167 77 2 4 167 3 168 5.22e-62 189
Msa0151950 AT1G70800.1 53.374 163 75 1 5 167 13 174 9.31e-61 186
Msa0151950 AT5G37740.2 48.295 176 79 2 4 167 3 178 2.57e-59 182
Msa0151950 AT1G48590.3 44.848 165 57 2 3 167 38 168 1.73e-46 150
Msa0151950 AT4G05330.2 47.436 156 80 2 5 159 143 297 5.81e-39 134
Msa0151950 AT4G21160.2 48.077 156 79 2 5 159 179 333 1.84e-38 134
Msa0151950 AT4G21160.3 48.077 156 79 2 5 159 179 333 1.84e-38 134
Msa0151950 AT4G21160.1 48.077 156 79 2 5 159 179 333 1.84e-38 134
Msa0151950 AT4G21160.4 48.077 156 79 2 5 159 179 333 1.84e-38 134
Msa0151950 AT4G05330.3 47.436 156 80 2 5 159 178 332 2.59e-38 134
Msa0151950 AT4G05330.1 47.436 156 80 2 5 159 178 332 2.59e-38 134
Msa0151950 AT5G47710.1 40.625 160 92 2 6 163 5 163 3.40e-35 121
Msa0151950 AT5G47710.2 40.625 160 92 2 6 163 5 163 3.40e-35 121
Msa0151950 AT5G47710.3 40.625 160 92 2 6 163 5 163 3.40e-35 121
Msa0151950 AT5G47710.4 40.625 160 92 2 6 163 5 163 3.40e-35 121
Msa0151950 AT3G07940.1 42.208 154 87 2 5 157 227 379 3.85e-35 126

Find 59 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAGGTTGCAAAGGTCTATT+AGG 0.188697 1_4:+14315846 Msa0151950:CDS
ATCCGTTTGGCAAGTCATTT+TGG 0.197413 1_4:+14314102 Msa0151950:five_prime_UTR
CTGAAGAGAGCAGTTGTATT+TGG 0.198293 1_4:+14315733 Msa0151950:CDS
TTTCTCCGTCGACGACAAAA+TGG 0.198849 1_4:+14315596 Msa0151950:CDS
CTTTATATAATAAATAATTT+AGG 0.213696 1_4:-14315970 None:intergenic
GGATTTGATTATGAAGTTTA+AGG 0.225701 1_4:-14314083 None:intergenic
AAGAATTAACCCTTTCAATA+AGG 0.243737 1_4:+14315307 Msa0151950:CDS
TGAAGTTTAAGGAGCTTCTT+TGG 0.258075 1_4:-14314072 None:intergenic
AACATAATACAACAGAAAAT+TGG 0.291858 1_4:-14314012 None:intergenic
TCAATCTTAGAATCATTTCT+TGG 0.308077 1_4:-14315773 None:intergenic
ATTTGTACACATTGAGCATA+TGG 0.352534 1_4:-14315642 None:intergenic
AGAATTAACCCTTTCAATAA+GGG 0.363219 1_4:+14315308 Msa0151950:CDS
CAAATGGTTGTGCAATCAAA+AGG 0.374974 1_4:+14315682 Msa0151950:CDS
GAAGTTTAAGGAGCTTCTTT+GGG 0.377034 1_4:-14314071 None:intergenic
ATTGAGTGGGTGGATGTTCC+AGG 0.378200 1_4:+14315828 Msa0151950:CDS
TCAAAAGGGTTCAAGCAAAT+AGG 0.382577 1_4:+14315697 Msa0151950:CDS
GGCATGGATAATAATGTTCT+TGG 0.394699 1_4:+14314126 Msa0151950:exon
ACTTCATAATCAAATCCGTT+TGG 0.419897 1_4:+14314089 Msa0151950:five_prime_UTR
TTCTCCGTCGACGACAAAAT+GGG 0.428457 1_4:+14315597 Msa0151950:CDS
CTAAAACTTCGTATTAAAAG+AGG 0.428755 1_4:+14314153 Msa0151950:CDS
TGTCAACATTGGTCATGAAC+AGG 0.430334 1_4:+14314224 Msa0151950:CDS
AAATGTTGAGAGTGGAGAAT+TGG 0.430897 1_4:+14315797 Msa0151950:CDS
CCAATGTTGACAACAACATA+AGG 0.434516 1_4:-14314213 None:intergenic
CAGGTTGCAAAGGTCTATTA+GGG 0.446108 1_4:+14315847 Msa0151950:CDS
AAATGTGATGTAATATATAG+TGG 0.446651 1_4:+14316036 Msa0151950:three_prime_UTR
CTCTTACATCCCTTATTGAA+AGG 0.451223 1_4:-14315317 None:intergenic
TTGCGATCTAGCAACTATGT+AGG 0.462106 1_4:+14313806 Msa0151950:five_prime_UTR
TAGTCGTTTGATTCATGCAT+TGG 0.478458 1_4:-14315934 None:intergenic
ATCTTAGAATCATTTCTTGG+AGG 0.484585 1_4:-14315770 None:intergenic
CCTAATAGACCTTTGCAACC+TGG 0.491322 1_4:-14315846 None:intergenic
TCTTACATCCCTTATTGAAA+GGG 0.497303 1_4:-14315316 None:intergenic
CTCCAAAATGACTTGCCAAA+CGG 0.499213 1_4:-14314104 None:intergenic
TGTAAGAGTTCCAATACGTC+TGG 0.504818 1_4:+14315332 Msa0151950:CDS
GTTAATTCTTCATTCCACTC+AGG 0.513309 1_4:-14315294 None:intergenic
AAGTTGGATACTCTTCCAAA+TGG 0.514104 1_4:+14315666 Msa0151950:CDS
TTAATTCTTCATTCCACTCA+GGG 0.514723 1_4:-14315293 None:intergenic
CCTTATGTTGTTGTCAACAT+TGG 0.522538 1_4:+14314213 Msa0151950:CDS
TGCGATCTAGCAACTATGTA+GGG 0.526514 1_4:+14313807 Msa0151950:five_prime_UTR
AAATGGTTGTGCAATCAAAA+GGG 0.538475 1_4:+14315683 Msa0151950:CDS
CAATGTTGACAACAACATAA+GGG 0.538879 1_4:-14314212 None:intergenic
TCTAGCAACTATGTAGGGAT+AGG 0.544531 1_4:+14313812 Msa0151950:five_prime_UTR
AGATTGAGAAATGTTGAGAG+TGG 0.545029 1_4:+14315789 Msa0151950:CDS
TGAGAGTGGAGAATTGGTTG+TGG 0.553380 1_4:+14315803 Msa0151950:CDS
TTGATTCATGCATTGGACCT+CGG 0.559027 1_4:-14315927 None:intergenic
GTGGATGTTCCAGGTTGCAA+AGG 0.560781 1_4:+14315837 Msa0151950:CDS
GACAACAACATAAGGGTCGC+TGG 0.561798 1_4:-14314205 None:intergenic
AAGTTTAAGGAGCTTCTTTG+GGG 0.573694 1_4:-14314070 None:intergenic
TCAATGTGTACAAATGAAGT+TGG 0.578075 1_4:+14315650 Msa0151950:CDS
AAAACAATTGCAACCCTGAG+TGG 0.600340 1_4:+14315280 Msa0151950:CDS
AATTGGTTGTGGAAATTGAG+TGG 0.610176 1_4:+14315814 Msa0151950:CDS
GGTTGTGGAAATTGAGTGGG+TGG 0.614075 1_4:+14315818 Msa0151950:CDS
ATTGGTTGTGGAAATTGAGT+GGG 0.621207 1_4:+14315815 Msa0151950:CDS
TGCCAAAACAAAATTGAGGT+CGG 0.639420 1_4:+14313885 Msa0151950:five_prime_UTR
TACCTGCCAAAACAAAATTG+AGG 0.651981 1_4:+14313881 Msa0151950:five_prime_UTR
TACAACTGCTCTCTTCAGCA+AGG 0.655573 1_4:-14315728 None:intergenic
AAGTCTTATTGTAATATCCG+AGG 0.666252 1_4:+14315910 Msa0151950:three_prime_UTR
CAACTATGTAGGGATAGGAG+AGG 0.684285 1_4:+14313817 Msa0151950:five_prime_UTR
AGGTTGCAAAGGTCTATTAG+GGG 0.692342 1_4:+14315848 Msa0151950:CDS
AGTTTAAGGAGCTTCTTTGG+GGG 0.694941 1_4:-14314069 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAATTTTTTTTTTTACG+AGG + chr1_4:14314853-14314872 Msa0151950:intron 10.0%
!!! TTTTAAGTTAAAATCAATTA+CGG + chr1_4:14315118-14315137 Msa0151950:intron 10.0%
!!! AAAAAATTTTTTTTTTTACG+AGG + chr1_4:14314853-14314872 Msa0151950:intron 10.0%
!!! TTTTAAGTTAAAATCAATTA+CGG + chr1_4:14315118-14315137 Msa0151950:intron 10.0%
!!! ATTATGTTATTTTAATGCTT+TGG - chr1_4:14313957-14313976 None:intergenic 15.0%
!!! AAAAAAAATTTTTTAGACTC+AGG - chr1_4:14314847-14314866 None:intergenic 15.0%
!! CAATTCATATGTATAAAAAA+GGG - chr1_4:14314927-14314946 None:intergenic 15.0%
!! ACAATTCATATGTATAAAAA+AGG - chr1_4:14314928-14314947 None:intergenic 15.0%
!!! ATTATGTTATTTTAATGCTT+TGG - chr1_4:14313957-14313976 None:intergenic 15.0%
!!! AAAAAAAATTTTTTAGACTC+AGG - chr1_4:14314847-14314866 None:intergenic 15.0%
!! CAATTCATATGTATAAAAAA+GGG - chr1_4:14314927-14314946 None:intergenic 15.0%
!! ACAATTCATATGTATAAAAA+AGG - chr1_4:14314928-14314947 None:intergenic 15.0%
!! AACATAATACAACAGAAAAT+TGG - chr1_4:14314015-14314034 None:intergenic 20.0%
!!! AATTCTTTTGACAAAATTAC+CGG - chr1_4:14314398-14314417 None:intergenic 20.0%
!! GTTATGCAAAATTATGTTAT+TGG + chr1_4:14314514-14314533 Msa0151950:intron 20.0%
!!! ATACTATGAATTGATTTTAC+AGG + chr1_4:14314775-14314794 Msa0151950:intron 20.0%
!!! TGTGTTTTATAATTGAAGTT+TGG + chr1_4:14314947-14314966 Msa0151950:intron 20.0%
!! TAAACTGAACAATAAATTTG+AGG + chr1_4:14315051-14315070 Msa0151950:intron 20.0%
!!! AATAACTAAATGCATTTTGT+GGG + chr1_4:14315453-14315472 Msa0151950:intron 20.0%
!! TCATCAACAAATAAGTTAAT+TGG - chr1_4:14315530-14315549 None:intergenic 20.0%
!! AAATGTGATGTAATATATAG+TGG + chr1_4:14316036-14316055 Msa0151950:three_prime_UTR 20.0%
!! AACATAATACAACAGAAAAT+TGG - chr1_4:14314015-14314034 None:intergenic 20.0%
!!! AATTCTTTTGACAAAATTAC+CGG - chr1_4:14314398-14314417 None:intergenic 20.0%
!! GTTATGCAAAATTATGTTAT+TGG + chr1_4:14314514-14314533 Msa0151950:intron 20.0%
!!! ATACTATGAATTGATTTTAC+AGG + chr1_4:14314775-14314794 Msa0151950:intron 20.0%
!!! TGTGTTTTATAATTGAAGTT+TGG + chr1_4:14314947-14314966 Msa0151950:intron 20.0%
!! TAAACTGAACAATAAATTTG+AGG + chr1_4:14315051-14315070 Msa0151950:intron 20.0%
!!! AATAACTAAATGCATTTTGT+GGG + chr1_4:14315453-14315472 Msa0151950:intron 20.0%
!! TCATCAACAAATAAGTTAAT+TGG - chr1_4:14315530-14315549 None:intergenic 20.0%
!! AAATGTGATGTAATATATAG+TGG + chr1_4:14316036-14316055 Msa0151950:three_prime_UTR 20.0%
! GGATTTGATTATGAAGTTTA+AGG - chr1_4:14314086-14314105 None:intergenic 25.0%
! CTAAAACTTCGTATTAAAAG+AGG + chr1_4:14314153-14314172 Msa0151950:CDS 25.0%
!! ATTCTTTTGACAAAATTACC+GGG - chr1_4:14314397-14314416 None:intergenic 25.0%
! ATCTGTATTGAATTTACTCT+TGG - chr1_4:14314623-14314642 None:intergenic 25.0%
!! AATTTACAACCTTTCGTTTT+TGG - chr1_4:14314823-14314842 None:intergenic 25.0%
!! TTTGCAAATATCAAGAGTTT+TGG - chr1_4:14314886-14314905 None:intergenic 25.0%
!! GTTTTATAATTGAAGTTTGG+TGG + chr1_4:14314950-14314969 Msa0151950:intron 25.0%
! TGGTTATGCAATAACAAAAA+TGG + chr1_4:14315002-14315021 Msa0151950:intron 25.0%
! AAGAATTAACCCTTTCAATA+AGG + chr1_4:14315307-14315326 Msa0151950:CDS 25.0%
! AGAATTAACCCTTTCAATAA+GGG + chr1_4:14315308-14315327 Msa0151950:CDS 25.0%
!! CAATAACTAAATGCATTTTG+TGG + chr1_4:14315452-14315471 Msa0151950:intron 25.0%
! TCAATCTTAGAATCATTTCT+TGG - chr1_4:14315776-14315795 None:intergenic 25.0%
! GGATTTGATTATGAAGTTTA+AGG - chr1_4:14314086-14314105 None:intergenic 25.0%
! CTAAAACTTCGTATTAAAAG+AGG + chr1_4:14314153-14314172 Msa0151950:CDS 25.0%
!! ATTCTTTTGACAAAATTACC+GGG - chr1_4:14314397-14314416 None:intergenic 25.0%
! ATCTGTATTGAATTTACTCT+TGG - chr1_4:14314623-14314642 None:intergenic 25.0%
!! AATTTACAACCTTTCGTTTT+TGG - chr1_4:14314823-14314842 None:intergenic 25.0%
!! TTTGCAAATATCAAGAGTTT+TGG - chr1_4:14314886-14314905 None:intergenic 25.0%
!! GTTTTATAATTGAAGTTTGG+TGG + chr1_4:14314950-14314969 Msa0151950:intron 25.0%
! TGGTTATGCAATAACAAAAA+TGG + chr1_4:14315002-14315021 Msa0151950:intron 25.0%
! AAGAATTAACCCTTTCAATA+AGG + chr1_4:14315307-14315326 Msa0151950:CDS 25.0%
! AGAATTAACCCTTTCAATAA+GGG + chr1_4:14315308-14315327 Msa0151950:CDS 25.0%
!! CAATAACTAAATGCATTTTG+TGG + chr1_4:14315452-14315471 Msa0151950:intron 25.0%
! TCAATCTTAGAATCATTTCT+TGG - chr1_4:14315776-14315795 None:intergenic 25.0%
TGTACTAAGATTCCATTAGT+AGG + chr1_4:14313987-14314006 Msa0151950:intron 30.0%
GTACTAAGATTCCATTAGTA+GGG + chr1_4:14313988-14314007 Msa0151950:intron 30.0%
ACTTCATAATCAAATCCGTT+TGG + chr1_4:14314089-14314108 Msa0151950:five_prime_UTR 30.0%
CAATGTTGACAACAACATAA+GGG - chr1_4:14314215-14314234 None:intergenic 30.0%
AGAGAAAAATAGAGAAAGCA+AGG - chr1_4:14314256-14314275 None:intergenic 30.0%
!! GCTTTCTCTATTTTTCTCTA+AGG + chr1_4:14314257-14314276 Msa0151950:intron 30.0%
! TTGGTGATATTGTTAAGAGT+AGG + chr1_4:14314533-14314552 Msa0151950:intron 30.0%
TAGGAATATCCAAAACCTTA+TGG + chr1_4:14314552-14314571 Msa0151950:intron 30.0%
ATATCCAAAACCTTATGGTA+TGG + chr1_4:14314557-14314576 Msa0151950:intron 30.0%
! CTTTTCCTTTGCTTTGTAAA+TGG + chr1_4:14314585-14314604 Msa0151950:intron 30.0%
AGTTACCATTTACAAAGCAA+AGG - chr1_4:14314593-14314612 None:intergenic 30.0%
! TTGTCATCACATATTCCTTT+TGG + chr1_4:14314656-14314675 Msa0151950:intron 30.0%
!! TCATTTTAGTCACCATTTTG+AGG + chr1_4:14314740-14314759 Msa0151950:intron 30.0%
!! CATTTTAGTCACCATTTTGA+GGG + chr1_4:14314741-14314760 Msa0151950:intron 30.0%
!! TTGATTTTAGTCCCTCAAAA+TGG - chr1_4:14314755-14314774 None:intergenic 30.0%
TTAATTCTTCATTCCACTCA+GGG - chr1_4:14315296-14315315 None:intergenic 30.0%
TCTTACATCCCTTATTGAAA+GGG - chr1_4:14315319-14315338 None:intergenic 30.0%
ACTTGACTCTGTAACTTTAA+AGG - chr1_4:14315494-14315513 None:intergenic 30.0%
ATTTGTACACATTGAGCATA+TGG - chr1_4:14315645-14315664 None:intergenic 30.0%
TCAATGTGTACAAATGAAGT+TGG + chr1_4:14315650-14315669 Msa0151950:CDS 30.0%
AAATGGTTGTGCAATCAAAA+GGG + chr1_4:14315683-14315702 Msa0151950:CDS 30.0%
AGCAGTTGTATTTGGAAAAA+TGG + chr1_4:14315741-14315760 Msa0151950:CDS 30.0%
ATCTTAGAATCATTTCTTGG+AGG - chr1_4:14315773-14315792 None:intergenic 30.0%
!! AAGTCTTATTGTAATATCCG+AGG + chr1_4:14315910-14315929 Msa0151950:three_prime_UTR 30.0%
TGTACTAAGATTCCATTAGT+AGG + chr1_4:14313987-14314006 Msa0151950:intron 30.0%
GTACTAAGATTCCATTAGTA+GGG + chr1_4:14313988-14314007 Msa0151950:intron 30.0%
ACTTCATAATCAAATCCGTT+TGG + chr1_4:14314089-14314108 Msa0151950:five_prime_UTR 30.0%
CAATGTTGACAACAACATAA+GGG - chr1_4:14314215-14314234 None:intergenic 30.0%
AGAGAAAAATAGAGAAAGCA+AGG - chr1_4:14314256-14314275 None:intergenic 30.0%
!! GCTTTCTCTATTTTTCTCTA+AGG + chr1_4:14314257-14314276 Msa0151950:intron 30.0%
! TTGGTGATATTGTTAAGAGT+AGG + chr1_4:14314533-14314552 Msa0151950:intron 30.0%
TAGGAATATCCAAAACCTTA+TGG + chr1_4:14314552-14314571 Msa0151950:intron 30.0%
ATATCCAAAACCTTATGGTA+TGG + chr1_4:14314557-14314576 Msa0151950:intron 30.0%
! CTTTTCCTTTGCTTTGTAAA+TGG + chr1_4:14314585-14314604 Msa0151950:intron 30.0%
AGTTACCATTTACAAAGCAA+AGG - chr1_4:14314593-14314612 None:intergenic 30.0%
! TTGTCATCACATATTCCTTT+TGG + chr1_4:14314656-14314675 Msa0151950:intron 30.0%
!! TCATTTTAGTCACCATTTTG+AGG + chr1_4:14314740-14314759 Msa0151950:intron 30.0%
!! CATTTTAGTCACCATTTTGA+GGG + chr1_4:14314741-14314760 Msa0151950:intron 30.0%
!! TTGATTTTAGTCCCTCAAAA+TGG - chr1_4:14314755-14314774 None:intergenic 30.0%
TTAATTCTTCATTCCACTCA+GGG - chr1_4:14315296-14315315 None:intergenic 30.0%
TCTTACATCCCTTATTGAAA+GGG - chr1_4:14315319-14315338 None:intergenic 30.0%
ACTTGACTCTGTAACTTTAA+AGG - chr1_4:14315494-14315513 None:intergenic 30.0%
ATTTGTACACATTGAGCATA+TGG - chr1_4:14315645-14315664 None:intergenic 30.0%
TCAATGTGTACAAATGAAGT+TGG + chr1_4:14315650-14315669 Msa0151950:CDS 30.0%
AAATGGTTGTGCAATCAAAA+GGG + chr1_4:14315683-14315702 Msa0151950:CDS 30.0%
AGCAGTTGTATTTGGAAAAA+TGG + chr1_4:14315741-14315760 Msa0151950:CDS 30.0%
ATCTTAGAATCATTTCTTGG+AGG - chr1_4:14315773-14315792 None:intergenic 30.0%
!! AAGTCTTATTGTAATATCCG+AGG + chr1_4:14315910-14315929 Msa0151950:three_prime_UTR 30.0%
TACCTGCCAAAACAAAATTG+AGG + chr1_4:14313881-14313900 Msa0151950:five_prime_UTR 35.0%
TGCCAAAACAAAATTGAGGT+CGG + chr1_4:14313885-14313904 Msa0151950:five_prime_UTR 35.0%
!! TACCGACCTCAATTTTGTTT+TGG - chr1_4:14313890-14313909 None:intergenic 35.0%
AGAAAATTGGACCCTACTAA+TGG - chr1_4:14314002-14314021 None:intergenic 35.0%
AAGTTTAAGGAGCTTCTTTG+GGG - chr1_4:14314073-14314092 None:intergenic 35.0%
GAAGTTTAAGGAGCTTCTTT+GGG - chr1_4:14314074-14314093 None:intergenic 35.0%
TGAAGTTTAAGGAGCTTCTT+TGG - chr1_4:14314075-14314094 None:intergenic 35.0%
GGCATGGATAATAATGTTCT+TGG + chr1_4:14314126-14314145 Msa0151950:exon 35.0%
CCAATGTTGACAACAACATA+AGG - chr1_4:14314216-14314235 None:intergenic 35.0%
CCTTATGTTGTTGTCAACAT+TGG + chr1_4:14314213-14314232 Msa0151950:CDS 35.0%
TCATGATTCCGTCAAAATCA+CGG + chr1_4:14314451-14314470 Msa0151950:intron 35.0%
! TGAACCATACCATAAGGTTT+TGG - chr1_4:14314564-14314583 None:intergenic 35.0%
AAAAGCTGAACCATACCATA+AGG - chr1_4:14314570-14314589 None:intergenic 35.0%
!! CACATATTCCTTTTGGTCTT+TGG + chr1_4:14314663-14314682 Msa0151950:intron 35.0%
GAACAAAGACCAAAAACGAA+AGG + chr1_4:14314811-14314830 Msa0151950:intron 35.0%
TAATGGTTCGTATGTGTGTT+TGG + chr1_4:14314982-14315001 Msa0151950:intron 35.0%
GTTAATTCTTCATTCCACTC+AGG - chr1_4:14315297-14315316 None:intergenic 35.0%
CTCTTACATCCCTTATTGAA+AGG - chr1_4:14315320-14315339 None:intergenic 35.0%
AAAACTAGCTCCATCTAACT+TGG + chr1_4:14315360-14315379 Msa0151950:intron 35.0%
!! TTTTTGTTTCTCTTCGCAGA+CGG + chr1_4:14315557-14315576 Msa0151950:intron 35.0%
AAGTTGGATACTCTTCCAAA+TGG + chr1_4:14315666-14315685 Msa0151950:CDS 35.0%
!! CTTTTGATTGCACAACCATT+TGG - chr1_4:14315684-14315703 None:intergenic 35.0%
CAAATGGTTGTGCAATCAAA+AGG + chr1_4:14315682-14315701 Msa0151950:CDS 35.0%
TCAAAAGGGTTCAAGCAAAT+AGG + chr1_4:14315697-14315716 Msa0151950:CDS 35.0%
AGATTGAGAAATGTTGAGAG+TGG + chr1_4:14315789-14315808 Msa0151950:CDS 35.0%
AAATGTTGAGAGTGGAGAAT+TGG + chr1_4:14315797-14315816 Msa0151950:CDS 35.0%
AATTGGTTGTGGAAATTGAG+TGG + chr1_4:14315814-14315833 Msa0151950:CDS 35.0%
ATTGGTTGTGGAAATTGAGT+GGG + chr1_4:14315815-14315834 Msa0151950:CDS 35.0%
TAGTCGTTTGATTCATGCAT+TGG - chr1_4:14315937-14315956 None:intergenic 35.0%
TACCTGCCAAAACAAAATTG+AGG + chr1_4:14313881-14313900 Msa0151950:five_prime_UTR 35.0%
TGCCAAAACAAAATTGAGGT+CGG + chr1_4:14313885-14313904 Msa0151950:five_prime_UTR 35.0%
!! TACCGACCTCAATTTTGTTT+TGG - chr1_4:14313890-14313909 None:intergenic 35.0%
AGAAAATTGGACCCTACTAA+TGG - chr1_4:14314002-14314021 None:intergenic 35.0%
AAGTTTAAGGAGCTTCTTTG+GGG - chr1_4:14314073-14314092 None:intergenic 35.0%
GAAGTTTAAGGAGCTTCTTT+GGG - chr1_4:14314074-14314093 None:intergenic 35.0%
TGAAGTTTAAGGAGCTTCTT+TGG - chr1_4:14314075-14314094 None:intergenic 35.0%
GGCATGGATAATAATGTTCT+TGG + chr1_4:14314126-14314145 Msa0151950:exon 35.0%
CCAATGTTGACAACAACATA+AGG - chr1_4:14314216-14314235 None:intergenic 35.0%
CCTTATGTTGTTGTCAACAT+TGG + chr1_4:14314213-14314232 Msa0151950:CDS 35.0%
TCATGATTCCGTCAAAATCA+CGG + chr1_4:14314451-14314470 Msa0151950:intron 35.0%
! TGAACCATACCATAAGGTTT+TGG - chr1_4:14314564-14314583 None:intergenic 35.0%
AAAAGCTGAACCATACCATA+AGG - chr1_4:14314570-14314589 None:intergenic 35.0%
!! CACATATTCCTTTTGGTCTT+TGG + chr1_4:14314663-14314682 Msa0151950:intron 35.0%
GAACAAAGACCAAAAACGAA+AGG + chr1_4:14314811-14314830 Msa0151950:intron 35.0%
TAATGGTTCGTATGTGTGTT+TGG + chr1_4:14314982-14315001 Msa0151950:intron 35.0%
GTTAATTCTTCATTCCACTC+AGG - chr1_4:14315297-14315316 None:intergenic 35.0%
CTCTTACATCCCTTATTGAA+AGG - chr1_4:14315320-14315339 None:intergenic 35.0%
AAAACTAGCTCCATCTAACT+TGG + chr1_4:14315360-14315379 Msa0151950:intron 35.0%
!! TTTTTGTTTCTCTTCGCAGA+CGG + chr1_4:14315557-14315576 Msa0151950:intron 35.0%
AAGTTGGATACTCTTCCAAA+TGG + chr1_4:14315666-14315685 Msa0151950:CDS 35.0%
!! CTTTTGATTGCACAACCATT+TGG - chr1_4:14315684-14315703 None:intergenic 35.0%
CAAATGGTTGTGCAATCAAA+AGG + chr1_4:14315682-14315701 Msa0151950:CDS 35.0%
TCAAAAGGGTTCAAGCAAAT+AGG + chr1_4:14315697-14315716 Msa0151950:CDS 35.0%
AGATTGAGAAATGTTGAGAG+TGG + chr1_4:14315789-14315808 Msa0151950:CDS 35.0%
AAATGTTGAGAGTGGAGAAT+TGG + chr1_4:14315797-14315816 Msa0151950:CDS 35.0%
AATTGGTTGTGGAAATTGAG+TGG + chr1_4:14315814-14315833 Msa0151950:CDS 35.0%
ATTGGTTGTGGAAATTGAGT+GGG + chr1_4:14315815-14315834 Msa0151950:CDS 35.0%
TAGTCGTTTGATTCATGCAT+TGG - chr1_4:14315937-14315956 None:intergenic 35.0%
TTGCGATCTAGCAACTATGT+AGG + chr1_4:14313806-14313825 Msa0151950:five_prime_UTR 40.0%
TGCGATCTAGCAACTATGTA+GGG + chr1_4:14313807-14313826 Msa0151950:five_prime_UTR 40.0%
TCTAGCAACTATGTAGGGAT+AGG + chr1_4:14313812-14313831 Msa0151950:five_prime_UTR 40.0%
!!! GACCTCAATTTTGTTTTGGC+AGG - chr1_4:14313886-14313905 None:intergenic 40.0%
AGTTTAAGGAGCTTCTTTGG+GGG - chr1_4:14314072-14314091 None:intergenic 40.0%
! ATCCGTTTGGCAAGTCATTT+TGG + chr1_4:14314102-14314121 Msa0151950:five_prime_UTR 40.0%
! CTCCAAAATGACTTGCCAAA+CGG - chr1_4:14314107-14314126 None:intergenic 40.0%
TGTCAACATTGGTCATGAAC+AGG + chr1_4:14314224-14314243 Msa0151950:CDS 40.0%
CATGATTCCGTCAAAATCAC+GGG + chr1_4:14314452-14314471 Msa0151950:intron 40.0%
ATGATTCCGTCAAAATCACG+GGG + chr1_4:14314453-14314472 Msa0151950:intron 40.0%
! CAAAAACCCCGTGATTTTGA+CGG - chr1_4:14314462-14314481 None:intergenic 40.0%
! TTTGGTGGCAACACACATAA+TGG + chr1_4:14314965-14314984 Msa0151950:intron 40.0%
AAAACAATTGCAACCCTGAG+TGG + chr1_4:14315280-14315299 Msa0151950:CDS 40.0%
TGTAAGAGTTCCAATACGTC+TGG + chr1_4:14315332-14315351 Msa0151950:CDS 40.0%
! GTTTTGCTTACCAGACGTAT+TGG - chr1_4:14315345-14315364 None:intergenic 40.0%
GTAATGCATGCCAAGTTAGA+TGG - chr1_4:14315373-14315392 None:intergenic 40.0%
CTGAAGAGAGCAGTTGTATT+TGG + chr1_4:14315733-14315752 Msa0151950:CDS 40.0%
CAGGTTGCAAAGGTCTATTA+GGG + chr1_4:14315847-14315866 Msa0151950:CDS 40.0%
AGGTTGCAAAGGTCTATTAG+GGG + chr1_4:14315848-14315867 Msa0151950:CDS 40.0%
TTGATTCATGCATTGGACCT+CGG - chr1_4:14315930-14315949 None:intergenic 40.0%
TTGCGATCTAGCAACTATGT+AGG + chr1_4:14313806-14313825 Msa0151950:five_prime_UTR 40.0%
TGCGATCTAGCAACTATGTA+GGG + chr1_4:14313807-14313826 Msa0151950:five_prime_UTR 40.0%
TCTAGCAACTATGTAGGGAT+AGG + chr1_4:14313812-14313831 Msa0151950:five_prime_UTR 40.0%
!!! GACCTCAATTTTGTTTTGGC+AGG - chr1_4:14313886-14313905 None:intergenic 40.0%
AGTTTAAGGAGCTTCTTTGG+GGG - chr1_4:14314072-14314091 None:intergenic 40.0%
! ATCCGTTTGGCAAGTCATTT+TGG + chr1_4:14314102-14314121 Msa0151950:five_prime_UTR 40.0%
! CTCCAAAATGACTTGCCAAA+CGG - chr1_4:14314107-14314126 None:intergenic 40.0%
TGTCAACATTGGTCATGAAC+AGG + chr1_4:14314224-14314243 Msa0151950:CDS 40.0%
CATGATTCCGTCAAAATCAC+GGG + chr1_4:14314452-14314471 Msa0151950:intron 40.0%
ATGATTCCGTCAAAATCACG+GGG + chr1_4:14314453-14314472 Msa0151950:intron 40.0%
! CAAAAACCCCGTGATTTTGA+CGG - chr1_4:14314462-14314481 None:intergenic 40.0%
! TTTGGTGGCAACACACATAA+TGG + chr1_4:14314965-14314984 Msa0151950:intron 40.0%
AAAACAATTGCAACCCTGAG+TGG + chr1_4:14315280-14315299 Msa0151950:CDS 40.0%
TGTAAGAGTTCCAATACGTC+TGG + chr1_4:14315332-14315351 Msa0151950:CDS 40.0%
! GTTTTGCTTACCAGACGTAT+TGG - chr1_4:14315345-14315364 None:intergenic 40.0%
GTAATGCATGCCAAGTTAGA+TGG - chr1_4:14315373-14315392 None:intergenic 40.0%
CTGAAGAGAGCAGTTGTATT+TGG + chr1_4:14315733-14315752 Msa0151950:CDS 40.0%
CAGGTTGCAAAGGTCTATTA+GGG + chr1_4:14315847-14315866 Msa0151950:CDS 40.0%
AGGTTGCAAAGGTCTATTAG+GGG + chr1_4:14315848-14315867 Msa0151950:CDS 40.0%
TTGATTCATGCATTGGACCT+CGG - chr1_4:14315930-14315949 None:intergenic 40.0%
CAACTATGTAGGGATAGGAG+AGG + chr1_4:14313817-14313836 Msa0151950:five_prime_UTR 45.0%
!! CGTTTGGCAAGTCATTTTGG+AGG + chr1_4:14314105-14314124 Msa0151950:five_prime_UTR 45.0%
ACAGAACGCCAAAGACCAAA+AGG - chr1_4:14314674-14314693 None:intergenic 45.0%
TTTCTCCGTCGACGACAAAA+TGG + chr1_4:14315596-14315615 Msa0151950:CDS 45.0%
TTCTCCGTCGACGACAAAAT+GGG + chr1_4:14315597-14315616 Msa0151950:CDS 45.0%
! ATCACCCATTTTGTCGTCGA+CGG - chr1_4:14315604-14315623 None:intergenic 45.0%
TACAACTGCTCTCTTCAGCA+AGG - chr1_4:14315731-14315750 None:intergenic 45.0%
TGAGAGTGGAGAATTGGTTG+TGG + chr1_4:14315803-14315822 Msa0151950:CDS 45.0%
CCTAATAGACCTTTGCAACC+TGG - chr1_4:14315849-14315868 None:intergenic 45.0%
CCAGGTTGCAAAGGTCTATT+AGG + chr1_4:14315846-14315865 Msa0151950:CDS 45.0%
CAACTATGTAGGGATAGGAG+AGG + chr1_4:14313817-14313836 Msa0151950:five_prime_UTR 45.0%
!! CGTTTGGCAAGTCATTTTGG+AGG + chr1_4:14314105-14314124 Msa0151950:five_prime_UTR 45.0%
ACAGAACGCCAAAGACCAAA+AGG - chr1_4:14314674-14314693 None:intergenic 45.0%
TTTCTCCGTCGACGACAAAA+TGG + chr1_4:14315596-14315615 Msa0151950:CDS 45.0%
TTCTCCGTCGACGACAAAAT+GGG + chr1_4:14315597-14315616 Msa0151950:CDS 45.0%
! ATCACCCATTTTGTCGTCGA+CGG - chr1_4:14315604-14315623 None:intergenic 45.0%
TACAACTGCTCTCTTCAGCA+AGG - chr1_4:14315731-14315750 None:intergenic 45.0%
TGAGAGTGGAGAATTGGTTG+TGG + chr1_4:14315803-14315822 Msa0151950:CDS 45.0%
CCTAATAGACCTTTGCAACC+TGG - chr1_4:14315849-14315868 None:intergenic 45.0%
CCAGGTTGCAAAGGTCTATT+AGG + chr1_4:14315846-14315865 Msa0151950:CDS 45.0%
!! CTTTATATAATAAATAATTT+AGG - chr1_4:14315973-14315992 None:intergenic 5.0%
!! CTTTATATAATAAATAATTT+AGG - chr1_4:14315973-14315992 None:intergenic 5.0%
!! GGCAAGTCATTTTGGAGGCA+TGG + chr1_4:14314110-14314129 Msa0151950:exon 50.0%
GACAACAACATAAGGGTCGC+TGG - chr1_4:14314208-14314227 None:intergenic 50.0%
TTGCAGAATCATCGTGTGCC+CGG + chr1_4:14314376-14314395 Msa0151950:intron 50.0%
GGTTGTGGAAATTGAGTGGG+TGG + chr1_4:14315818-14315837 Msa0151950:CDS 50.0%
ATTGAGTGGGTGGATGTTCC+AGG + chr1_4:14315828-14315847 Msa0151950:CDS 50.0%
GTGGATGTTCCAGGTTGCAA+AGG + chr1_4:14315837-14315856 Msa0151950:CDS 50.0%
!! GGCAAGTCATTTTGGAGGCA+TGG + chr1_4:14314110-14314129 Msa0151950:exon 50.0%
GACAACAACATAAGGGTCGC+TGG - chr1_4:14314208-14314227 None:intergenic 50.0%
TTGCAGAATCATCGTGTGCC+CGG + chr1_4:14314376-14314395 Msa0151950:intron 50.0%
GGTTGTGGAAATTGAGTGGG+TGG + chr1_4:14315818-14315837 Msa0151950:CDS 50.0%
ATTGAGTGGGTGGATGTTCC+AGG + chr1_4:14315828-14315847 Msa0151950:CDS 50.0%
GTGGATGTTCCAGGTTGCAA+AGG + chr1_4:14315837-14315856 Msa0151950:CDS 50.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 14313790 14316142 14313790 ID=Msa0151950;Name=Msa0151950
chr1_4 mRNA 14313790 14316142 14313790 ID=Msa0151950-mRNA-1;Parent=Msa0151950;Name=Msa0151950-mRNA-1;_AED=0.01;_eAED=0.01;_QI=318|1|1|1|0.66|0.5|4|261|172
chr1_4 exon 14313790 14313987 14313790 ID=Msa0151950-mRNA-1:exon:5654;Parent=Msa0151950-mRNA-1
chr1_4 exon 14314009 14314245 14314009 ID=Msa0151950-mRNA-1:exon:5655;Parent=Msa0151950-mRNA-1
chr1_4 exon 14315258 14315353 14315258 ID=Msa0151950-mRNA-1:exon:5656;Parent=Msa0151950-mRNA-1
chr1_4 exon 14315576 14316142 14315576 ID=Msa0151950-mRNA-1:exon:5657;Parent=Msa0151950-mRNA-1
chr1_4 five_prime_UTR 14313790 14313987 14313790 ID=Msa0151950-mRNA-1:five_prime_utr;Parent=Msa0151950-mRNA-1
chr1_4 five_prime_UTR 14314009 14314128 14314009 ID=Msa0151950-mRNA-1:five_prime_utr;Parent=Msa0151950-mRNA-1
chr1_4 CDS 14314129 14314245 14314129 ID=Msa0151950-mRNA-1:cds;Parent=Msa0151950-mRNA-1
chr1_4 CDS 14315258 14315353 14315258 ID=Msa0151950-mRNA-1:cds;Parent=Msa0151950-mRNA-1
chr1_4 CDS 14315576 14315881 14315576 ID=Msa0151950-mRNA-1:cds;Parent=Msa0151950-mRNA-1
chr1_4 three_prime_UTR 14315882 14316142 14315882 ID=Msa0151950-mRNA-1:three_prime_utr;Parent=Msa0151950-mRNA-1
Gene Sequence

>Msa0151950

ATGGATAATAATGTTCTTGGTCTTCTAAAACTTCGTATTAAAAGAGGTATTAATCTTGCAATTCGTGATTCTAATTCCAGCGACCCTTATGTTGTTGTCAACATTGGTCATGAACAGAAGTTGAAGACTCGTGTAGTGAAAAACAATTGCAACCCTGAGTGGAATGAAGAATTAACCCTTTCAATAAGGGATGTAAGAGTTCCAATACGTCTGACGGTTTTTGACAAAGACACTTTCTCCGTCGACGACAAAATGGGTGATGCAGAAATAGACTTGAAACCATATGCTCAATGTGTACAAATGAAGTTGGATACTCTTCCAAATGGTTGTGCAATCAAAAGGGTTCAAGCAAATAGGACTAACTGCCTTGCTGAAGAGAGCAGTTGTATTTGGAAAAATGGAAAAGTCCTCCAAGAAATGATTCTAAGATTGAGAAATGTTGAGAGTGGAGAATTGGTTGTGGAAATTGAGTGGGTGGATGTTCCAGGTTGCAAAGGTCTATTAGGGGCACAAATATAA

Protein sequence

>Msa0151950

MDNNVLGLLKLRIKRGINLAIRDSNSSDPYVVVNIGHEQKLKTRVVKNNCNPEWNEELTLSIRDVRVPIRLTVFDKDTFSVDDKMGDAEIDLKPYAQCVQMKLDTLPNGCAIKRVQANRTNCLAEESSCIWKNGKVLQEMILRLRNVESGELVVEIEWVDVPGCKGLLGAQI*