AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1113340


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1113340 MtrunA17_Chr7g0255791 98.886 449 5 0 1 449 1 449 0.0 939
Msa1113340 MtrunA17_Chr1g0203181 96.977 430 13 0 1 430 1 430 0.0 854
Msa1113340 MtrunA17_Chr4g0008361 96.279 430 16 0 1 430 1 430 0.0 851
Msa1113340 MtrunA17_Chr4g0008401 95.581 430 19 0 1 430 1 430 0.0 846
Msa1113340 MtrunA17_Chr2g0292921 95.116 430 21 0 1 430 1 430 0.0 844
Msa1113340 MtrunA17_Chr4g0051631 93.721 430 27 0 1 430 1 430 0.0 833
Msa1113340 MtrunA17_Chr4g0007371 93.519 432 26 1 1 430 1 432 0.0 831
Msa1113340 MtrunA17_Chr3g0142731 93.287 432 27 1 1 430 1 432 0.0 830
Msa1113340 MtrunA17_Chr8g0393021 91.011 445 39 1 1 444 1 445 0.0 830
Msa1113340 MtrunA17_Chr8g0386781 92.093 430 34 0 1 430 1 430 0.0 822
Msa1113340 MtrunA17_Chr8g0378821 41.244 434 245 3 1 424 1 434 1.88e-123 366
Msa1113340 MtrunA17_Chr3g0140821 41.648 437 239 4 1 424 1 434 1.23e-122 364
Msa1113340 MtrunA17_Chr1g0206881 40.789 456 250 5 1 443 1 449 2.74e-122 363
Msa1113340 MtrunA17_Chr4g0054511 41.419 437 240 4 1 424 1 434 3.92e-122 363
Msa1113340 MtrunA17_Chr7g0253411 40.553 434 248 3 1 424 1 434 1.31e-121 362
Msa1113340 MtrunA17_Chr6g0461281 39.910 446 257 3 1 435 1 446 3.52e-119 355
Msa1113340 MtrunA17_Chr2g0300671 37.045 440 264 5 1 431 1 436 2.31e-99 304
Msa1113340 MtrunA17_Chr2g0300491 36.807 451 272 5 1 442 1 447 6.26e-99 305
Msa1113340 MtrunA17_Chr7g0275431 34.932 438 268 7 2 423 3 439 2.99e-95 295
Msa1113340 MtrunA17_Chr3g0109241 31.111 135 85 2 269 395 4 138 1.89e-19 85.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1113340 AT5G12250.1 98.198 444 8 0 1 444 1 444 0.0 924
Msa1113340 AT5G62690.1 96.047 430 17 0 1 430 1 430 0.0 852
Msa1113340 AT5G62700.1 96.047 430 17 0 1 430 1 430 0.0 852
Msa1113340 AT5G23860.2 96.512 430 15 0 1 430 1 430 0.0 850
Msa1113340 AT5G23860.1 96.512 430 15 0 1 430 1 430 0.0 850
Msa1113340 AT2G29550.1 95.592 431 19 0 1 431 1 431 0.0 845
Msa1113340 AT1G75780.1 94.200 431 24 1 1 430 1 431 0.0 837
Msa1113340 AT1G20010.1 92.807 431 30 1 1 430 1 431 0.0 829
Msa1113340 AT5G44340.1 92.326 430 33 0 1 430 1 430 0.0 827
Msa1113340 AT4G20890.1 92.326 430 33 0 1 430 1 430 0.0 823
Msa1113340 AT1G64740.1 41.244 434 245 3 1 424 1 434 1.19e-123 367
Msa1113340 AT5G19780.1 41.244 434 245 3 1 424 1 434 2.05e-123 367
Msa1113340 AT5G19770.1 41.244 434 245 3 1 424 1 434 2.05e-123 367
Msa1113340 AT1G50010.1 41.648 437 239 4 1 424 1 434 1.64e-121 362
Msa1113340 AT1G04820.1 41.648 437 239 4 1 424 1 434 1.64e-121 362
Msa1113340 AT4G14960.2 41.648 437 239 4 1 424 1 434 1.88e-121 362
Msa1113340 AT4G14960.1 41.645 389 211 4 1 376 1 386 9.52e-102 310
Msa1113340 AT5G05620.1 35.160 438 267 7 2 423 3 439 1.67e-95 296
Msa1113340 AT3G61650.1 35.160 438 267 7 2 423 3 439 2.41e-95 295

Find 188 sgRNAs with CRISPR-Local

Find 237 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAGATATCTTTATTGAAAT+TGG 0.075330 7_3:+59570186 None:intergenic
CTTCGCTCTGTTGTCCAAAT+TGG 0.193911 7_3:+59570469 None:intergenic
ACCAGATCGGTTCAAAATTC+TGG 0.202910 7_3:-59572808 Msa1113340:CDS
CCCTCGTCTGCACTTCTTCA+TGG 0.225491 7_3:-59571182 Msa1113340:CDS
TCCATGGCCTCCACCTTTAT+TGG 0.234232 7_3:-59570878 Msa1113340:CDS
ACACTTGATTTAACATTGTT+TGG 0.235866 7_3:+59570926 None:intergenic
TGAGATTCACAGCCAGTTTC+CGG 0.253872 7_3:+59571212 None:intergenic
TCACTGCTTCTGCCATGTTC+AGG 0.262035 7_3:-59571030 Msa1113340:CDS
CATTTGCTCATCCACCTCTT+TGG 0.277735 7_3:+59570994 None:intergenic
CACATCTGCTGGGTGAGTTC+TGG 0.279765 7_3:+59571103 None:intergenic
GTTATTGAAGCAAAGAAATT+AGG 0.285359 7_3:+59573375 None:intergenic
TGGTAACTCAACCTCAATTC+AGG 0.292483 7_3:-59570858 Msa1113340:CDS
GTTAACAGTATTTATATAAC+TGG 0.317482 7_3:+59570084 None:intergenic
TTGTTTCTTATATCTGCTAT+TGG 0.318496 7_3:-59570371 Msa1113340:three_prime_UTR
TATGAAACAAATGGGAGTTT+AGG 0.325744 7_3:-59570156 Msa1113340:three_prime_UTR
AGCAGCACACATCATGTTCT+TGG 0.331795 7_3:+59571075 None:intergenic
TGACCGAAGACGAAGTTATC+AGG 0.336132 7_3:+59572590 None:intergenic
GACGAGTTTGGATGGGAAAA+TGG 0.336979 7_3:+59573000 None:intergenic
TGAGGTTGAGTTACCAATAA+AGG 0.339217 7_3:+59570865 None:intergenic
TCCTTTCGCCCAATTGTTAC+CGG 0.341476 7_3:+59572559 None:intergenic
TTCGCTCTGTTGTCCAAATT+GGG 0.342585 7_3:+59570470 None:intergenic
CCTCAATTCAGGAAATGTTT+AGG 0.342965 7_3:-59570847 Msa1113340:CDS
ATCTATTTGTTTCTGTATGT+TGG 0.344897 7_3:-59570403 Msa1113340:three_prime_UTR
TCTTGGAATCCCACATCTGC+TGG 0.346211 7_3:+59571092 None:intergenic
CGCTTTATGATATCTGCTTC+AGG 0.346443 7_3:-59572145 Msa1113340:CDS
AGTCCGGTGCCGGTAACAAT+TGG 0.346744 7_3:-59572568 Msa1113340:CDS
GTTTCAGGTGTGTCATTCAT+TGG 0.347553 7_3:-59572366 Msa1113340:CDS
GAGAATTGTGATTGTCTTCA+AGG 0.350951 7_3:-59572476 Msa1113340:intron
CACTTGATTTAACATTGTTT+GGG 0.358488 7_3:+59570927 None:intergenic
AACATACAGAAACAAATAGA+TGG 0.359403 7_3:+59570405 None:intergenic
ATAGGAATGACAAACTATTA+AGG 0.365870 7_3:+59570339 None:intergenic
TTGGGAGGAGGAACGGGATC+TGG 0.367167 7_3:-59572347 Msa1113340:CDS
CAACTCTGATCTCCGGAAAC+TGG 0.369333 7_3:-59571224 Msa1113340:CDS
TAGATATCTTTATTGAAATT+GGG 0.371721 7_3:+59570187 None:intergenic
ACAGAAAGAGTAGCATTATA+AGG 0.371726 7_3:+59572218 None:intergenic
GAGTGAGAGAGTGACGAGTT+TGG 0.377145 7_3:+59572988 None:intergenic
AAACTCCCATTTGTTTCATA+AGG 0.378512 7_3:+59570159 None:intergenic
AGAAGTCCTTATGAAACAAA+TGG 0.391777 7_3:-59570165 Msa1113340:three_prime_UTR
TTTCAGGTGTGTCATTCATT+GGG 0.392158 7_3:-59572365 Msa1113340:CDS
AGTAGGAAGAGTTCTTGTTC+TGG 0.394999 7_3:+59570963 None:intergenic
AGCAATTTACTGCTATGTTT+AGG 0.401883 7_3:-59570814 Msa1113340:CDS
CACTGCTTCTGCCATGTTCA+GGG 0.405397 7_3:-59571029 Msa1113340:CDS
AAAATGTGGACAAAATATAT+TGG 0.405451 7_3:+59573054 None:intergenic
CACTCATGGTTGCTGAGATC+AGG 0.406324 7_3:+59571281 None:intergenic
TAAATCGCGCATATATCTAT+TGG 0.412927 7_3:-59570225 Msa1113340:three_prime_UTR
AGAGAATGGAGATCCCAATT+TGG 0.413216 7_3:-59570483 Msa1113340:three_prime_UTR
CCTAAACATTTCCTGAATTG+AGG 0.415373 7_3:+59570847 None:intergenic
GAGAGAGTGACGAGTTTGGA+TGG 0.420666 7_3:+59572992 None:intergenic
TTGTAATTAGCTTGATTTGA+GGG 0.422055 7_3:-59570529 Msa1113340:three_prime_UTR
CGCCCAATTGTTACCGGCAC+CGG 0.422209 7_3:+59572565 None:intergenic
ACTTGCTGTCTTCGTTTCCC+TGG 0.423010 7_3:-59571253 Msa1113340:CDS
AGAGAAATTCTTCATGTTCA+AGG 0.425268 7_3:-59572845 Msa1113340:CDS
TGAGTTTCCGACGTATCTTC+CGG 0.427531 7_3:+59572751 None:intergenic
CCAGATCGGTTCAAAATTCT+GGG 0.430206 7_3:-59572807 Msa1113340:CDS
ACGCGCCATCCTCATGGACT+TGG 0.430677 7_3:-59572666 Msa1113340:CDS
AACGTCAACATCATCCTATC+AGG 0.441581 7_3:+59572284 None:intergenic
CATTCATTGGGAGGAGGAAC+GGG 0.442118 7_3:-59572353 Msa1113340:CDS
AACTTCGTCTTCGGTCAGTC+CGG 0.442188 7_3:-59572584 Msa1113340:CDS
CGTCTGCACTTCTTCATGGT+CGG 0.448628 7_3:-59571178 Msa1113340:CDS
TACTCTTTCTGTTCATCAGT+TGG 0.454328 7_3:-59572207 Msa1113340:CDS
ACCAATAAAGGTGGAGGCCA+TGG 0.456675 7_3:+59570877 None:intergenic
AGGAGGAACGGGATCTGGAA+TGG 0.458058 7_3:-59572342 Msa1113340:CDS
CAGTGGCATCCTGGTACTGC+TGG 0.458734 7_3:+59570696 None:intergenic
ATCCTCATGGACTTGGAGCC+TGG 0.462721 7_3:-59572659 Msa1113340:CDS
TACTGCTATGTTTAGGAGGA+AGG 0.463039 7_3:-59570807 Msa1113340:CDS
GGAGGAACGGGATCTGGAAT+GGG 0.463459 7_3:-59572341 Msa1113340:CDS
CGAGCTGGATGTGGAGAGAA+TGG 0.463675 7_3:-59570497 Msa1113340:three_prime_UTR
ATGCGCGATTTAACGTTGTT+CGG 0.467077 7_3:+59570236 None:intergenic
GGACTTGGAGCCTGGTACAA+TGG 0.467426 7_3:-59572651 Msa1113340:CDS
CGTCCTGATAACTTCGTCTT+CGG 0.467522 7_3:-59572593 Msa1113340:CDS
CTTCATCAGCAGTGGCATCC+TGG 0.470075 7_3:+59570687 None:intergenic
TTCGGTGTTTCCTTCACCCA+AGG 0.473114 7_3:-59572261 Msa1113340:CDS
GGATGGGAAAATGGTTGAGC+GGG 0.475027 7_3:+59573009 None:intergenic
AAGAAGTGCAGACGAGGGAA+TGG 0.475598 7_3:+59571187 None:intergenic
GGAGGAAGGCTTTCTTGCAT+TGG 0.483915 7_3:-59570793 Msa1113340:CDS
GATCGTTGGATGGAAACCTT+TGG 0.485733 7_3:+59573107 None:intergenic
GTCTTCGGTCAGTCCGGTGC+CGG 0.488348 7_3:-59572578 Msa1113340:CDS
GAAGTCCTTATGAAACAAAT+GGG 0.491222 7_3:-59570164 Msa1113340:three_prime_UTR
AAGCTAATTACAAAGGATAG+AGG 0.493459 7_3:+59570539 None:intergenic
GTCCGGTGCCGGTAACAATT+GGG 0.494376 7_3:-59572567 Msa1113340:CDS
AACAACAGTATCAGAAACCT+TGG 0.499320 7_3:+59572244 None:intergenic
GCTTTCTTGCATTGGTACAC+TGG 0.499379 7_3:-59570785 Msa1113340:CDS
TGTTCCACGCGCCATCCTCA+TGG 0.500720 7_3:-59572672 Msa1113340:CDS
ATATGAGGACGACGAGGAAG+AGG 0.503486 7_3:-59570657 Msa1113340:CDS
CAGAACTCACCCAGCAGATG+TGG 0.503870 7_3:-59571102 Msa1113340:CDS
TTAGAGAGGAATATCCTGAT+AGG 0.506228 7_3:-59572298 Msa1113340:CDS
GTCAACTCAACTCTGATCTC+CGG 0.506307 7_3:-59571231 Msa1113340:CDS
ATTTAGTATCGAGCTGGATG+TGG 0.508405 7_3:-59570506 Msa1113340:three_prime_UTR
TGATGTGTGCTGCTGATCCT+AGG 0.510462 7_3:-59571066 Msa1113340:CDS
AGATCAGAGTTGAGTTGACC+AGG 0.512852 7_3:+59571235 None:intergenic
CAGGTGTGTCATTCATTGGG+AGG 0.513562 7_3:-59572362 Msa1113340:CDS
CCTTGTGTTGAATGACGAAA+TGG 0.514569 7_3:+59573413 None:intergenic
GAGGTCATTCATGTTGCTCT+CGG 0.515428 7_3:+59570730 None:intergenic
AGCTCAACTTAGCTTGTCAA+AGG 0.516394 7_3:-59570121 Msa1113340:three_prime_UTR
TGAGGGATTTAGTATCGAGC+TGG 0.519681 7_3:-59570512 Msa1113340:three_prime_UTR
TTGCATTGGTACACTGGTGA+AGG 0.524227 7_3:-59570779 Msa1113340:CDS
GAAACAAATGGGAGTTTAGG+TGG 0.526246 7_3:-59570153 Msa1113340:three_prime_UTR
AGAAGTGCAGACGAGGGAAT+GGG 0.530868 7_3:+59571188 None:intergenic
CGAACACTGTCCATTGTACC+AGG 0.531519 7_3:+59572641 None:intergenic
TCATTCATTGGGAGGAGGAA+CGG 0.532913 7_3:-59572354 Msa1113340:CDS
TGATGAAGAAGGAGAATATG+AGG 0.535322 7_3:-59570672 Msa1113340:CDS
CTTGGAATCCCACATCTGCT+GGG 0.536021 7_3:+59571093 None:intergenic
AGAGAGTGACGAGTTTGGAT+GGG 0.536270 7_3:+59572993 None:intergenic
GTCTGAGTACCAGCAGTACC+AGG 0.537588 7_3:-59570705 Msa1113340:CDS
TTTCCGACGTATCTTCCGGT+TGG 0.537588 7_3:+59572755 None:intergenic
ACTCTTCCTACTTTGTTGAG+TGG 0.537980 7_3:-59570952 Msa1113340:CDS
AGAAAATGCTGATGAGTGTA+TGG 0.538616 7_3:-59572183 Msa1113340:CDS
CACGGAATTGCTGAGAGCCA+CGG 0.539468 7_3:+59571137 None:intergenic
GATGCCACTGCTGATGAAGA+AGG 0.543436 7_3:-59570683 Msa1113340:CDS
GCCGGTAACAATTGGGCGAA+AGG 0.544358 7_3:-59572560 Msa1113340:CDS
AGTGTTCGCACTGGTCCTTA+CGG 0.544816 7_3:-59572626 Msa1113340:CDS
ATGTTCAAGGAGGACAATGC+GGG 0.546684 7_3:-59572832 Msa1113340:CDS
TTGAAGCAAAGAAATTAGGA+TGG 0.548188 7_3:+59573379 None:intergenic
ACGGAATTGCTGAGAGCCAC+GGG 0.549187 7_3:+59571138 None:intergenic
AATTTACTGCTATGTTTAGG+AGG 0.549323 7_3:-59570811 Msa1113340:CDS
CTCATCTTCATCACTATCAC+AGG 0.549329 7_3:-59572968 Msa1113340:intron
TGGTGAAGGCATGGATGAGA+TGG 0.552982 7_3:-59570765 Msa1113340:CDS
TTTGTAATTAGCTTGATTTG+AGG 0.554453 7_3:-59570530 Msa1113340:three_prime_UTR
CCATTTCGTCATTCAACACA+AGG 0.559646 7_3:-59573413 Msa1113340:five_prime_UTR
GTGAGGTAGCGACCATGCCT+AGG 0.560055 7_3:+59571049 None:intergenic
TTCTCCTTCTTCATCAGCAG+TGG 0.564039 7_3:+59570679 None:intergenic
CAATTCAGGAAATGTTTAGG+AGG 0.566101 7_3:-59570844 Msa1113340:CDS
TGAGAAGTGATGTGGATCGT+TGG 0.566606 7_3:+59573093 None:intergenic
ACCATGAAGAAGTGCAGACG+AGG 0.568203 7_3:+59571181 None:intergenic
GCAAAGAAATTAGGATGGGA+CGG 0.568809 7_3:+59573384 None:intergenic
AAGTGATGTGGATCGTTGGA+TGG 0.569149 7_3:+59573097 None:intergenic
TCATGGTTGCTGAGATCAGG+TGG 0.569874 7_3:+59571284 None:intergenic
TGCTCCTCGAGGTCTCTCCA+TGG 0.570432 7_3:-59570894 Msa1113340:CDS
GTATCAGAAACCTTGGGTGA+AGG 0.570880 7_3:+59572251 None:intergenic
AGTTTCAGTATTCAAATCAC+AGG 0.571878 7_3:-59572886 Msa1113340:intron
GTTGATTTCGAAGATTAGAG+AGG 0.576526 7_3:-59572312 Msa1113340:CDS
ACAACAGTATCAGAAACCTT+GGG 0.578403 7_3:+59572245 None:intergenic
TGAAGCAAAGAAATTAGGAT+GGG 0.579190 7_3:+59573380 None:intergenic
TGGGATCCACTCAACAAAGT+AGG 0.583322 7_3:+59570946 None:intergenic
TTGGTACACTGGTGAAGGCA+TGG 0.586360 7_3:-59570774 Msa1113340:CDS
TGAGTTACCAATAAAGGTGG+AGG 0.588019 7_3:+59570871 None:intergenic
GAGCACGGCATAGATCCAAC+CGG 0.589745 7_3:-59572770 Msa1113340:CDS
CTGATCTCAGCAACCATGAG+TGG 0.592931 7_3:-59571280 Msa1113340:CDS
GAAGTAGTTTGCGACGAGCA+CGG 0.593265 7_3:-59572785 Msa1113340:CDS
ACAACGAAGCCTCCTGTGGA+AGG 0.594540 7_3:-59572697 Msa1113340:CDS
GTGTGTCATTCATTGGGAGG+AGG 0.596369 7_3:-59572359 Msa1113340:CDS
ACTGCTTCTGCCATGTTCAG+GGG 0.596534 7_3:-59571028 Msa1113340:CDS
GGACAATGCGGGAACCAGAT+CGG 0.597537 7_3:-59572821 Msa1113340:CDS
TCAAATCAAGCTAATTACAA+AGG 0.597696 7_3:+59570532 None:intergenic
TTTGCTCCTCTCACATCCCG+TGG 0.599145 7_3:-59571154 Msa1113340:CDS
CATCAATCTCCACCGTCCAA+AGG 0.599873 7_3:-59573123 Msa1113340:five_prime_UTR
GCGTGGAACAAACCTTCCAC+AGG 0.601663 7_3:+59572685 None:intergenic
TAAGATGAGCACCAAAGAGG+TGG 0.605176 7_3:-59571005 Msa1113340:CDS
GGTTGAGTTACCAATAAAGG+TGG 0.607360 7_3:+59570868 None:intergenic
CAATTTGGACAACAGAGCGA+AGG 0.608406 7_3:-59570468 Msa1113340:three_prime_UTR
AATTCAGGAAATGTTTAGGA+GGG 0.609115 7_3:-59570843 Msa1113340:CDS
ACATACAGAAACAAATAGAT+GGG 0.609432 7_3:+59570406 None:intergenic
ACAATGGACAGTGTTCGCAC+TGG 0.609664 7_3:-59572635 Msa1113340:CDS
ACAGCAAGTCACTCCACTCA+TGG 0.610966 7_3:+59571267 None:intergenic
GCGAAAGGACATTACACTGA+AGG 0.611519 7_3:-59572545 Msa1113340:CDS
GCTCATCTTACCCCTGAACA+TGG 0.612907 7_3:+59571018 None:intergenic
AGCGAGATAGAGTGAAAATG+TGG 0.613930 7_3:+59573040 None:intergenic
TGGATGGGAAAATGGTTGAG+CGG 0.615130 7_3:+59573008 None:intergenic
AGGCTCCAAGTCCATGAGGA+TGG 0.616165 7_3:+59572661 None:intergenic
AGAACTCACCCAGCAGATGT+GGG 0.617381 7_3:-59571101 Msa1113340:CDS
TCACTTCTCATCACAAAGCG+AGG 0.619680 7_3:-59573080 Msa1113340:five_prime_UTR
TGTGCTGCTGATCCTAGGCA+TGG 0.620259 7_3:-59571061 Msa1113340:CDS
GGATGGAAACCTTTGGACGG+TGG 0.629305 7_3:+59573114 None:intergenic
GGACGGAAGATCTGACCGTA+AGG 0.631185 7_3:+59572611 None:intergenic
GTTTGTGACATTGCTCCTCG+AGG 0.633730 7_3:-59570905 Msa1113340:CDS
CACTTCTCATCACAAAGCGA+GGG 0.636087 7_3:-59573079 Msa1113340:five_prime_UTR
TACTACAACGAAGCCTCCTG+TGG 0.636492 7_3:-59572701 Msa1113340:CDS
AAGTCCATGAGGATGGCGCG+TGG 0.636612 7_3:+59572668 None:intergenic
AATTTGGACAACAGAGCGAA+GGG 0.638625 7_3:-59570467 Msa1113340:three_prime_UTR
TGAGAGCCACGGGATGTGAG+AGG 0.640513 7_3:+59571148 None:intergenic
TGGAACAAACCTTCCACAGG+AGG 0.640659 7_3:+59572688 None:intergenic
CTTTGTGATGAGAAGTGATG+TGG 0.645586 7_3:+59573085 None:intergenic
GTGTATGGTTCTTGATAATG+AGG 0.647671 7_3:-59572168 Msa1113340:CDS
CATGTTCAAGGAGGACAATG+CGG 0.653004 7_3:-59572833 Msa1113340:CDS
GAGGCCATGGAGAGACCTCG+AGG 0.661607 7_3:+59570890 None:intergenic
GATCAGAGTTGAGTTGACCA+GGG 0.663540 7_3:+59571236 None:intergenic
GTTGGATGGAAACCTTTGGA+CGG 0.663569 7_3:+59573111 None:intergenic
GTTCTGGAACAGTCAATGCA+CGG 0.666610 7_3:+59571119 None:intergenic
CCATGAAGAAGTGCAGACGA+GGG 0.668664 7_3:+59571182 None:intergenic
GGGTAAGATGAGCACCAAAG+AGG 0.672077 7_3:-59571008 Msa1113340:CDS
CGAAGACGAAGTTATCAGGA+CGG 0.676420 7_3:+59572594 None:intergenic
GAAATTCTTCATGTTCAAGG+AGG 0.679770 7_3:-59572842 Msa1113340:CDS
TACCAGGCTCCAAGTCCATG+AGG 0.693763 7_3:+59572657 None:intergenic
GATCCAACCGGAAGATACGT+CGG 0.698972 7_3:-59572758 Msa1113340:CDS
TGAACATGGCAGAAGCAGTG+AGG 0.715259 7_3:+59571032 None:intergenic
AGGAGAATATGAGGACGACG+AGG 0.722154 7_3:-59570663 Msa1113340:CDS
CATTTCGTCATTCAACACAA+GGG 0.727551 7_3:-59573412 Msa1113340:five_prime_UTR
ACTGCTGGTACTCAGACACG+AGG 0.785475 7_3:+59570711 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATGTTTTGATTATTTAAATT+TGG + chr7_3:59570372-59570391 None:intergenic 10.0%
!! AAAACATAATAACATTAAAA+TGG + chr7_3:59571774-59571793 None:intergenic 10.0%
!! TTAAACTTATATTTACACTT+TGG - chr7_3:59571889-59571908 Msa1113340:intron 15.0%
!! TAAACTTATATTTACACTTT+GGG - chr7_3:59571890-59571909 Msa1113340:intron 15.0%
!! AAATTAGTCAGATTAAATTT+AGG + chr7_3:59572096-59572115 None:intergenic 15.0%
!! TAGATATCTTTATTGAAATT+GGG + chr7_3:59573328-59573347 None:intergenic 15.0%
!! AAACCCAAATCAAAATTTAA+AGG - chr7_3:59570165-59570184 Msa1113340:three_prime_UTR 20.0%
!! AACCCAAATCAAAATTTAAA+GGG - chr7_3:59570166-59570185 Msa1113340:three_prime_UTR 20.0%
!!! AAGAAACAATTTCTACTTTT+AGG + chr7_3:59570230-59570249 None:intergenic 20.0%
!! AAAATGTGGACAAAATATAT+TGG + chr7_3:59570461-59570480 None:intergenic 20.0%
!! TGAAAATCTTGATTCTATTA+TGG - chr7_3:59571081-59571100 Msa1113340:CDS 20.0%
!!! TTGTGATTTTGTGTTTTTTT+AGG - chr7_3:59571123-59571142 Msa1113340:CDS 20.0%
!!! TGTGATTTTGTGTTTTTTTA+GGG - chr7_3:59571124-59571143 Msa1113340:CDS 20.0%
!!! GTCAAATTACTTTTCTATTT+TGG - chr7_3:59571645-59571664 Msa1113340:intron 20.0%
!!! ATGTTAATGATTCATTTTTC+TGG - chr7_3:59571998-59572017 Msa1113340:intron 20.0%
!! AATTTGATTGTTCACAAATT+GGG - chr7_3:59572130-59572149 Msa1113340:CDS 20.0%
!! CTAGATATCTTTATTGAAAT+TGG + chr7_3:59573329-59573348 None:intergenic 20.0%
!! GTTAACAGTATTTATATAAC+TGG + chr7_3:59573431-59573450 None:intergenic 20.0%
! GTTATTGAAGCAAAGAAATT+AGG + chr7_3:59570140-59570159 None:intergenic 25.0%
!!! GACCCTTTAAATTTTGATTT+GGG + chr7_3:59570171-59570190 None:intergenic 25.0%
!!! TGACCCTTTAAATTTTGATT+TGG + chr7_3:59570172-59570191 None:intergenic 25.0%
! AAATCTTGATTCTATTATGG+CGG - chr7_3:59571084-59571103 Msa1113340:CDS 25.0%
!! TTTTTCTTTGTTCATCACTA+GGG - chr7_3:59571451-59571470 Msa1113340:intron 25.0%
! TTGTGGTAATTATTGAATAG+TGG - chr7_3:59571551-59571570 Msa1113340:intron 25.0%
!!! TCATTTTTCTGGTTCAATTA+TGG - chr7_3:59572009-59572028 Msa1113340:intron 25.0%
! GAATTTGATTGTTCACAAAT+TGG - chr7_3:59572129-59572148 Msa1113340:CDS 25.0%
! CACTTGATTTAACATTGTTT+GGG + chr7_3:59572588-59572607 None:intergenic 25.0%
! ACACTTGATTTAACATTGTT+TGG + chr7_3:59572589-59572608 None:intergenic 25.0%
! TCAAATCAAGCTAATTACAA+AGG + chr7_3:59572983-59573002 None:intergenic 25.0%
!! TTTGTAATTAGCTTGATTTG+AGG - chr7_3:59572982-59573001 Msa1113340:five_prime_UTR 25.0%
!! TTGTAATTAGCTTGATTTGA+GGG - chr7_3:59572983-59573002 Msa1113340:five_prime_UTR 25.0%
! ACATACAGAAACAAATAGAT+GGG + chr7_3:59573109-59573128 None:intergenic 25.0%
! AACATACAGAAACAAATAGA+TGG + chr7_3:59573110-59573129 None:intergenic 25.0%
!!! ATCTATTTGTTTCTGTATGT+TGG - chr7_3:59573109-59573128 Msa1113340:five_prime_UTR 25.0%
!! TTGTTTCTTATATCTGCTAT+TGG - chr7_3:59573141-59573160 Msa1113340:intron 25.0%
! ATAGGAATGACAAACTATTA+AGG + chr7_3:59573176-59573195 None:intergenic 25.0%
TGAAGCAAAGAAATTAGGAT+GGG + chr7_3:59570135-59570154 None:intergenic 30.0%
TTGAAGCAAAGAAATTAGGA+TGG + chr7_3:59570136-59570155 None:intergenic 30.0%
GAAATTGAAGAAACTAGATC+TGG + chr7_3:59570594-59570613 None:intergenic 30.0%
AGTTTCAGTATTCAAATCAC+AGG - chr7_3:59570626-59570645 Msa1113340:exon 30.0%
AGAGAAATTCTTCATGTTCA+AGG - chr7_3:59570667-59570686 Msa1113340:CDS 30.0%
!!! TTGTGTTTTTTTAGGGTTTC+AGG - chr7_3:59571131-59571150 Msa1113340:CDS 30.0%
ACAGAAAGAGTAGCATTATA+AGG + chr7_3:59571297-59571316 None:intergenic 30.0%
! CTTTTTCTTTGTTCATCACT+AGG - chr7_3:59571450-59571469 Msa1113340:intron 30.0%
ATTAGTTAGATCAGACTTCT+TGG - chr7_3:59571524-59571543 Msa1113340:intron 30.0%
!! AAGTGTTGAACAATTGCAAT+AGG + chr7_3:59571932-59571951 None:intergenic 30.0%
TGGTGATTCTTAACTACTAA+TGG - chr7_3:59572029-59572048 Msa1113340:intron 30.0%
! TTTTCTCATTGAGCACTTTT+CGG - chr7_3:59572058-59572077 Msa1113340:intron 30.0%
AATTCAGGAAATGTTTAGGA+GGG - chr7_3:59572669-59572688 Msa1113340:CDS 30.0%
AGCAATTTACTGCTATGTTT+AGG - chr7_3:59572698-59572717 Msa1113340:CDS 30.0%
AATTTACTGCTATGTTTAGG+AGG - chr7_3:59572701-59572720 Msa1113340:CDS 30.0%
AAGCTAATTACAAAGGATAG+AGG + chr7_3:59572976-59572995 None:intergenic 30.0%
TAAATCGCGCATATATCTAT+TGG - chr7_3:59573287-59573306 Msa1113340:intron 30.0%
AGAAGTCCTTATGAAACAAA+TGG - chr7_3:59573347-59573366 Msa1113340:intron 30.0%
GAAGTCCTTATGAAACAAAT+GGG - chr7_3:59573348-59573367 Msa1113340:intron 30.0%
AAACTCCCATTTGTTTCATA+AGG + chr7_3:59573356-59573375 None:intergenic 30.0%
TATGAAACAAATGGGAGTTT+AGG - chr7_3:59573356-59573375 Msa1113340:five_prime_UTR 30.0%
CATTTCGTCATTCAACACAA+GGG - chr7_3:59570100-59570119 Msa1113340:three_prime_UTR 35.0%
TTGTTTAACATGTGCCCTAA+GGG + chr7_3:59570207-59570226 None:intergenic 35.0%
!! ACTTCTTAACTTGTGCCTTA+AGG - chr7_3:59570329-59570348 Msa1113340:three_prime_UTR 35.0%
!! CTTCTTAACTTGTGCCTTAA+GGG - chr7_3:59570330-59570349 Msa1113340:three_prime_UTR 35.0%
!! AATGTTAACTTGTGCCCTTA+AGG + chr7_3:59570347-59570366 None:intergenic 35.0%
GAAATTCTTCATGTTCAAGG+AGG - chr7_3:59570670-59570689 Msa1113340:CDS 35.0%
GAGAATTGTGATTGTCTTCA+AGG - chr7_3:59571036-59571055 Msa1113340:CDS 35.0%
! TTTCAGGTGTGTCATTCATT+GGG - chr7_3:59571147-59571166 Msa1113340:CDS 35.0%
! GTTGATTTCGAAGATTAGAG+AGG - chr7_3:59571200-59571219 Msa1113340:CDS 35.0%
TTAGAGAGGAATATCCTGAT+AGG - chr7_3:59571214-59571233 Msa1113340:CDS 35.0%
! TAGGATGATGTTGACGTTTT+CGG - chr7_3:59571233-59571252 Msa1113340:CDS 35.0%
ACAACAGTATCAGAAACCTT+GGG + chr7_3:59571270-59571289 None:intergenic 35.0%
AACAACAGTATCAGAAACCT+TGG + chr7_3:59571271-59571290 None:intergenic 35.0%
TACTCTTTCTGTTCATCAGT+TGG - chr7_3:59571305-59571324 Msa1113340:intron 35.0%
AGAAAATGCTGATGAGTGTA+TGG - chr7_3:59571329-59571348 Msa1113340:intron 35.0%
!! GTGTATGGTTCTTGATAATG+AGG - chr7_3:59571344-59571363 Msa1113340:intron 35.0%
TGACTTATTCTAGATGCTCA+AGG - chr7_3:59571723-59571742 Msa1113340:intron 35.0%
ATGTACTCAGTTTACTGATC+TGG - chr7_3:59571817-59571836 Msa1113340:intron 35.0%
AGTTTACTGATCTGGTTAGT+GGG - chr7_3:59571825-59571844 Msa1113340:intron 35.0%
ATGAATGCATCATGTGACTA+TGG - chr7_3:59571968-59571987 Msa1113340:intron 35.0%
! CAATCACACGTTTTCAGTAA+TGG + chr7_3:59572185-59572204 None:intergenic 35.0%
TGAGGTTGAGTTACCAATAA+AGG + chr7_3:59572650-59572669 None:intergenic 35.0%
CCTAAACATTTCCTGAATTG+AGG + chr7_3:59572668-59572687 None:intergenic 35.0%
CCTCAATTCAGGAAATGTTT+AGG - chr7_3:59572665-59572684 Msa1113340:CDS 35.0%
CAATTCAGGAAATGTTTAGG+AGG - chr7_3:59572668-59572687 Msa1113340:CDS 35.0%
TGATGAAGAAGGAGAATATG+AGG - chr7_3:59572840-59572859 Msa1113340:CDS 35.0%
ATGCGAAAAAAGTCATGCAT+AGG + chr7_3:59573194-59573213 None:intergenic 35.0%
!!! ATGCATGACTTTTTTCGCAT+TGG - chr7_3:59573194-59573213 Msa1113340:intron 35.0%
CCTTGTGTTGAATGACGAAA+TGG + chr7_3:59570102-59570121 None:intergenic 40.0%
CCATTTCGTCATTCAACACA+AGG - chr7_3:59570099-59570118 Msa1113340:three_prime_UTR 40.0%
GCAAAGAAATTAGGATGGGA+CGG + chr7_3:59570131-59570150 None:intergenic 40.0%
!! TCATGTTAACTTGTGCCCTT+AGG - chr7_3:59570189-59570208 Msa1113340:three_prime_UTR 40.0%
!! CATGTTAACTTGTGCCCTTA+GGG - chr7_3:59570190-59570209 Msa1113340:three_prime_UTR 40.0%
GTTGTTTAACATGTGCCCTA+AGG + chr7_3:59570208-59570227 None:intergenic 40.0%
CTTTGTGATGAGAAGTGATG+TGG + chr7_3:59570430-59570449 None:intergenic 40.0%
AGCGAGATAGAGTGAAAATG+TGG + chr7_3:59570475-59570494 None:intergenic 40.0%
CTCATCTTCATCACTATCAC+AGG - chr7_3:59570544-59570563 Msa1113340:three_prime_UTR 40.0%
! ACCAGATCGGTTCAAAATTC+TGG - chr7_3:59570704-59570723 Msa1113340:CDS 40.0%
! CCAGATCGGTTCAAAATTCT+GGG - chr7_3:59570705-59570724 Msa1113340:CDS 40.0%
! GTTTCAGGTGTGTCATTCAT+TGG - chr7_3:59571146-59571165 Msa1113340:CDS 40.0%
AACGTCAACATCATCCTATC+AGG + chr7_3:59571231-59571250 None:intergenic 40.0%
CGCTTTATGATATCTGCTTC+AGG - chr7_3:59571367-59571386 Msa1113340:intron 40.0%
AGAGAAGAATACTCACAGCT+AGG + chr7_3:59571411-59571430 None:intergenic 40.0%
! TCAGACTTCTTGGTTAGTTG+TGG - chr7_3:59571534-59571553 Msa1113340:intron 40.0%
CAGTTTACTGATCTGGTTAG+TGG - chr7_3:59571824-59571843 Msa1113340:intron 40.0%
AGTAGGAAGAGTTCTTGTTC+TGG + chr7_3:59572552-59572571 None:intergenic 40.0%
ACTCTTCCTACTTTGTTGAG+TGG - chr7_3:59572560-59572579 Msa1113340:CDS 40.0%
TGAGTTACCAATAAAGGTGG+AGG + chr7_3:59572644-59572663 None:intergenic 40.0%
GGTTGAGTTACCAATAAAGG+TGG + chr7_3:59572647-59572666 None:intergenic 40.0%
TGGTAACTCAACCTCAATTC+AGG - chr7_3:59572654-59572673 Msa1113340:CDS 40.0%
TACTGCTATGTTTAGGAGGA+AGG - chr7_3:59572705-59572724 Msa1113340:CDS 40.0%
! ATTTAGTATCGAGCTGGATG+TGG - chr7_3:59573006-59573025 Msa1113340:five_prime_UTR 40.0%
AGAGAATGGAGATCCCAATT+TGG - chr7_3:59573029-59573048 Msa1113340:five_prime_UTR 40.0%
TTCGCTCTGTTGTCCAAATT+GGG + chr7_3:59573045-59573064 None:intergenic 40.0%
AATTTGGACAACAGAGCGAA+GGG - chr7_3:59573045-59573064 Msa1113340:five_prime_UTR 40.0%
ATGCGCGATTTAACGTTGTT+CGG + chr7_3:59573279-59573298 None:intergenic 40.0%
GAAACAAATGGGAGTTTAGG+TGG - chr7_3:59573359-59573378 Msa1113340:five_prime_UTR 40.0%
!! AGCTCAACTTAGCTTGTCAA+AGG - chr7_3:59573391-59573410 Msa1113340:five_prime_UTR 40.0%
GTTGGATGGAAACCTTTGGA+CGG + chr7_3:59570404-59570423 None:intergenic 45.0%
GATCGTTGGATGGAAACCTT+TGG + chr7_3:59570408-59570427 None:intergenic 45.0%
AAGTGATGTGGATCGTTGGA+TGG + chr7_3:59570418-59570437 None:intergenic 45.0%
TGAGAAGTGATGTGGATCGT+TGG + chr7_3:59570422-59570441 None:intergenic 45.0%
TCACTTCTCATCACAAAGCG+AGG - chr7_3:59570432-59570451 Msa1113340:three_prime_UTR 45.0%
CACTTCTCATCACAAAGCGA+GGG - chr7_3:59570433-59570452 Msa1113340:three_prime_UTR 45.0%
TGGATGGGAAAATGGTTGAG+CGG + chr7_3:59570507-59570526 None:intergenic 45.0%
GACGAGTTTGGATGGGAAAA+TGG + chr7_3:59570515-59570534 None:intergenic 45.0%
AGAGAGTGACGAGTTTGGAT+GGG + chr7_3:59570522-59570541 None:intergenic 45.0%
CATGTTCAAGGAGGACAATG+CGG - chr7_3:59570679-59570698 Msa1113340:CDS 45.0%
ATGTTCAAGGAGGACAATGC+GGG - chr7_3:59570680-59570699 Msa1113340:CDS 45.0%
! CCCAGAATTTTGAACCGATC+TGG + chr7_3:59570708-59570727 None:intergenic 45.0%
TGAGTTTCCGACGTATCTTC+CGG + chr7_3:59570764-59570783 None:intergenic 45.0%
CGAAGACGAAGTTATCAGGA+CGG + chr7_3:59570921-59570940 None:intergenic 45.0%
CGTCCTGATAACTTCGTCTT+CGG - chr7_3:59570919-59570938 Msa1113340:CDS 45.0%
TGACCGAAGACGAAGTTATC+AGG + chr7_3:59570925-59570944 None:intergenic 45.0%
TCCTTTCGCCCAATTGTTAC+CGG + chr7_3:59570956-59570975 None:intergenic 45.0%
GCGAAAGGACATTACACTGA+AGG - chr7_3:59570967-59570986 Msa1113340:CDS 45.0%
TCATTCATTGGGAGGAGGAA+CGG - chr7_3:59571158-59571177 Msa1113340:CDS 45.0%
GTATCAGAAACCTTGGGTGA+AGG + chr7_3:59571264-59571283 None:intergenic 45.0%
! GTGTGATTGTTTGCTGCAGT+TGG - chr7_3:59572196-59572215 Msa1113340:CDS 45.0%
!! GATCAGAGTTGAGTTGACCA+GGG + chr7_3:59572279-59572298 None:intergenic 45.0%
!! AGATCAGAGTTGAGTTGACC+AGG + chr7_3:59572280-59572299 None:intergenic 45.0%
GTCAACTCAACTCTGATCTC+CGG - chr7_3:59572281-59572300 Msa1113340:CDS 45.0%
TGAGATTCACAGCCAGTTTC+CGG + chr7_3:59572303-59572322 None:intergenic 45.0%
!! GTTCTGGAACAGTCAATGCA+CGG + chr7_3:59572396-59572415 None:intergenic 45.0%
AGCAGCACACATCATGTTCT+TGG + chr7_3:59572440-59572459 None:intergenic 45.0%
TAAGATGAGCACCAAAGAGG+TGG - chr7_3:59572507-59572526 Msa1113340:CDS 45.0%
CATTTGCTCATCCACCTCTT+TGG + chr7_3:59572521-59572540 None:intergenic 45.0%
TGGGATCCACTCAACAAAGT+AGG + chr7_3:59572569-59572588 None:intergenic 45.0%
! GCTTTCTTGCATTGGTACAC+TGG - chr7_3:59572727-59572746 Msa1113340:CDS 45.0%
! TTGCATTGGTACACTGGTGA+AGG - chr7_3:59572733-59572752 Msa1113340:CDS 45.0%
GAGGTCATTCATGTTGCTCT+CGG + chr7_3:59572785-59572804 None:intergenic 45.0%
TTCTCCTTCTTCATCAGCAG+TGG + chr7_3:59572836-59572855 None:intergenic 45.0%
! TGAGGGATTTAGTATCGAGC+TGG - chr7_3:59573000-59573019 Msa1113340:five_prime_UTR 45.0%
CTTCGCTCTGTTGTCCAAAT+TGG + chr7_3:59573046-59573065 None:intergenic 45.0%
CAATTTGGACAACAGAGCGA+AGG - chr7_3:59573044-59573063 Msa1113340:five_prime_UTR 45.0%
CATCAATCTCCACCGTCCAA+AGG - chr7_3:59570389-59570408 Msa1113340:three_prime_UTR 50.0%
GGATGGGAAAATGGTTGAGC+GGG + chr7_3:59570506-59570525 None:intergenic 50.0%
GAGAGAGTGACGAGTTTGGA+TGG + chr7_3:59570523-59570542 None:intergenic 50.0%
GAGTGAGAGAGTGACGAGTT+TGG + chr7_3:59570527-59570546 None:intergenic 50.0%
! GAAGTAGTTTGCGACGAGCA+CGG - chr7_3:59570727-59570746 Msa1113340:CDS 50.0%
GATCCAACCGGAAGATACGT+CGG - chr7_3:59570754-59570773 Msa1113340:CDS 50.0%
TTTCCGACGTATCTTCCGGT+TGG + chr7_3:59570760-59570779 None:intergenic 50.0%
TACTACAACGAAGCCTCCTG+TGG - chr7_3:59570811-59570830 Msa1113340:CDS 50.0%
TGGAACAAACCTTCCACAGG+AGG + chr7_3:59570827-59570846 None:intergenic 50.0%
CGAACACTGTCCATTGTACC+AGG + chr7_3:59570874-59570893 None:intergenic 50.0%
ACAATGGACAGTGTTCGCAC+TGG - chr7_3:59570877-59570896 Msa1113340:CDS 50.0%
! AGTGTTCGCACTGGTCCTTA+CGG - chr7_3:59570886-59570905 Msa1113340:CDS 50.0%
AACTTCGTCTTCGGTCAGTC+CGG - chr7_3:59570928-59570947 Msa1113340:CDS 50.0%
! CAGGTGTGTCATTCATTGGG+AGG - chr7_3:59571150-59571169 Msa1113340:CDS 50.0%
! GTGTGTCATTCATTGGGAGG+AGG - chr7_3:59571153-59571172 Msa1113340:CDS 50.0%
CATTCATTGGGAGGAGGAAC+GGG - chr7_3:59571159-59571178 Msa1113340:CDS 50.0%
!! TTCGGTGTTTCCTTCACCCA+AGG - chr7_3:59571251-59571270 Msa1113340:CDS 50.0%
TGGCAAACAGCATCAACGAC+AGG + chr7_3:59572165-59572184 None:intergenic 50.0%
TCATGGTTGCTGAGATCAGG+TGG + chr7_3:59572231-59572250 None:intergenic 50.0%
CACTCATGGTTGCTGAGATC+AGG + chr7_3:59572234-59572253 None:intergenic 50.0%
CTGATCTCAGCAACCATGAG+TGG - chr7_3:59572232-59572251 Msa1113340:CDS 50.0%
ACAGCAAGTCACTCCACTCA+TGG + chr7_3:59572248-59572267 None:intergenic 50.0%
!! ACTTGCTGTCTTCGTTTCCC+TGG - chr7_3:59572259-59572278 Msa1113340:CDS 50.0%
CAACTCTGATCTCCGGAAAC+TGG - chr7_3:59572288-59572307 Msa1113340:CDS 50.0%
! AGAAGTGCAGACGAGGGAAT+GGG + chr7_3:59572327-59572346 None:intergenic 50.0%
! AAGAAGTGCAGACGAGGGAA+TGG + chr7_3:59572328-59572347 None:intergenic 50.0%
! CCATGAAGAAGTGCAGACGA+GGG + chr7_3:59572333-59572352 None:intergenic 50.0%
! ACCATGAAGAAGTGCAGACG+AGG + chr7_3:59572334-59572353 None:intergenic 50.0%
CGTCTGCACTTCTTCATGGT+CGG - chr7_3:59572334-59572353 Msa1113340:CDS 50.0%
AGAACTCACCCAGCAGATGT+GGG - chr7_3:59572411-59572430 Msa1113340:intron 50.0%
CTTGGAATCCCACATCTGCT+GGG + chr7_3:59572422-59572441 None:intergenic 50.0%
TCTTGGAATCCCACATCTGC+TGG + chr7_3:59572423-59572442 None:intergenic 50.0%
! TGATGTGTGCTGCTGATCCT+AGG - chr7_3:59572446-59572465 Msa1113340:intron 50.0%
TGAACATGGCAGAAGCAGTG+AGG + chr7_3:59572483-59572502 None:intergenic 50.0%
TCACTGCTTCTGCCATGTTC+AGG - chr7_3:59572482-59572501 Msa1113340:CDS 50.0%
CACTGCTTCTGCCATGTTCA+GGG - chr7_3:59572483-59572502 Msa1113340:CDS 50.0%
ACTGCTTCTGCCATGTTCAG+GGG - chr7_3:59572484-59572503 Msa1113340:CDS 50.0%
GCTCATCTTACCCCTGAACA+TGG + chr7_3:59572497-59572516 None:intergenic 50.0%
GGGTAAGATGAGCACCAAAG+AGG - chr7_3:59572504-59572523 Msa1113340:CDS 50.0%
GTTTGTGACATTGCTCCTCG+AGG - chr7_3:59572607-59572626 Msa1113340:CDS 50.0%
TCCATGGCCTCCACCTTTAT+TGG - chr7_3:59572634-59572653 Msa1113340:CDS 50.0%
ACCAATAAAGGTGGAGGCCA+TGG + chr7_3:59572638-59572657 None:intergenic 50.0%
GGAGGAAGGCTTTCTTGCAT+TGG - chr7_3:59572719-59572738 Msa1113340:CDS 50.0%
TTGGTACACTGGTGAAGGCA+TGG - chr7_3:59572738-59572757 Msa1113340:CDS 50.0%
! TGGTGAAGGCATGGATGAGA+TGG - chr7_3:59572747-59572766 Msa1113340:CDS 50.0%
GATGCCACTGCTGATGAAGA+AGG - chr7_3:59572829-59572848 Msa1113340:CDS 50.0%
AGGAGAATATGAGGACGACG+AGG - chr7_3:59572849-59572868 Msa1113340:CDS 50.0%
ATATGAGGACGACGAGGAAG+AGG - chr7_3:59572855-59572874 Msa1113340:exon 50.0%
GGATGGAAACCTTTGGACGG+TGG + chr7_3:59570401-59570420 None:intergenic 55.0%
GGACAATGCGGGAACCAGAT+CGG - chr7_3:59570691-59570710 Msa1113340:CDS 55.0%
GAGCACGGCATAGATCCAAC+CGG - chr7_3:59570742-59570761 Msa1113340:CDS 55.0%
ACAACGAAGCCTCCTGTGGA+AGG - chr7_3:59570815-59570834 Msa1113340:CDS 55.0%
GCGTGGAACAAACCTTCCAC+AGG + chr7_3:59570830-59570849 None:intergenic 55.0%
AGGCTCCAAGTCCATGAGGA+TGG + chr7_3:59570854-59570873 None:intergenic 55.0%
ATCCTCATGGACTTGGAGCC+TGG - chr7_3:59570853-59570872 Msa1113340:CDS 55.0%
TACCAGGCTCCAAGTCCATG+AGG + chr7_3:59570858-59570877 None:intergenic 55.0%
GGACTTGGAGCCTGGTACAA+TGG - chr7_3:59570861-59570880 Msa1113340:CDS 55.0%
GGACGGAAGATCTGACCGTA+AGG + chr7_3:59570904-59570923 None:intergenic 55.0%
!! AGTCCGGTGCCGGTAACAAT+TGG - chr7_3:59570944-59570963 Msa1113340:CDS 55.0%
!! GTCCGGTGCCGGTAACAATT+GGG - chr7_3:59570945-59570964 Msa1113340:CDS 55.0%
GCCGGTAACAATTGGGCGAA+AGG - chr7_3:59570952-59570971 Msa1113340:CDS 55.0%
AGGAGGAACGGGATCTGGAA+TGG - chr7_3:59571170-59571189 Msa1113340:CDS 55.0%
! GGAGGAACGGGATCTGGAAT+GGG - chr7_3:59571171-59571190 Msa1113340:CDS 55.0%
CCCTCGTCTGCACTTCTTCA+TGG - chr7_3:59572330-59572349 Msa1113340:CDS 55.0%
TTTGCTCCTCTCACATCCCG+TGG - chr7_3:59572358-59572377 Msa1113340:CDS 55.0%
ACGGAATTGCTGAGAGCCAC+GGG + chr7_3:59572377-59572396 None:intergenic 55.0%
CACGGAATTGCTGAGAGCCA+CGG + chr7_3:59572378-59572397 None:intergenic 55.0%
CACATCTGCTGGGTGAGTTC+TGG + chr7_3:59572412-59572431 None:intergenic 55.0%
CAGAACTCACCCAGCAGATG+TGG - chr7_3:59572410-59572429 Msa1113340:intron 55.0%
! TGTGCTGCTGATCCTAGGCA+TGG - chr7_3:59572451-59572470 Msa1113340:intron 55.0%
ACTGCTGGTACTCAGACACG+AGG + chr7_3:59572804-59572823 None:intergenic 55.0%
GTCTGAGTACCAGCAGTACC+AGG - chr7_3:59572807-59572826 Msa1113340:CDS 55.0%
CTTCATCAGCAGTGGCATCC+TGG + chr7_3:59572828-59572847 None:intergenic 55.0%
CGAGCTGGATGTGGAGAGAA+TGG - chr7_3:59573015-59573034 Msa1113340:five_prime_UTR 55.0%
TGTTCCACGCGCCATCCTCA+TGG - chr7_3:59570840-59570859 Msa1113340:CDS 60.0%
AAGTCCATGAGGATGGCGCG+TGG + chr7_3:59570847-59570866 None:intergenic 60.0%
ACGCGCCATCCTCATGGACT+TGG - chr7_3:59570846-59570865 Msa1113340:CDS 60.0%
CGCCCAATTGTTACCGGCAC+CGG + chr7_3:59570950-59570969 None:intergenic 60.0%
TTGGGAGGAGGAACGGGATC+TGG - chr7_3:59571165-59571184 Msa1113340:CDS 60.0%
TGAGAGCCACGGGATGTGAG+AGG + chr7_3:59572367-59572386 None:intergenic 60.0%
GTGAGGTAGCGACCATGCCT+AGG + chr7_3:59572466-59572485 None:intergenic 60.0%
TGCTCCTCGAGGTCTCTCCA+TGG - chr7_3:59572618-59572637 Msa1113340:CDS 60.0%
CAGTGGCATCCTGGTACTGC+TGG + chr7_3:59572819-59572838 None:intergenic 60.0%
GTCTTCGGTCAGTCCGGTGC+CGG - chr7_3:59570934-59570953 Msa1113340:CDS 65.0%
GAGGCCATGGAGAGACCTCG+AGG + chr7_3:59572625-59572644 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 59570080 59573454 59570080 ID=Msa1113340;Name=Msa1113340
chr7_3 mRNA 59570080 59573454 59570080 ID=Msa1113340-mRNA-1;Parent=Msa1113340;Name=Msa1113340-mRNA-1;_AED=0.09;_eAED=0.09;_QI=322|1|1|1|0.5|0.4|5|554|449
chr7_3 exon 59570080 59571319 59570080 ID=Msa1113340-mRNA-1:exon:13277;Parent=Msa1113340-mRNA-1
chr7_3 exon 59572120 59572389 59572120 ID=Msa1113340-mRNA-1:exon:13276;Parent=Msa1113340-mRNA-1
chr7_3 exon 59572477 59572900 59572477 ID=Msa1113340-mRNA-1:exon:13275;Parent=Msa1113340-mRNA-1
chr7_3 exon 59572969 59573159 59572969 ID=Msa1113340-mRNA-1:exon:13274;Parent=Msa1113340-mRNA-1
chr7_3 exon 59573354 59573454 59573354 ID=Msa1113340-mRNA-1:exon:13273;Parent=Msa1113340-mRNA-1
chr7_3 five_prime_UTR 59573354 59573454 59573354 ID=Msa1113340-mRNA-1:five_prime_utr;Parent=Msa1113340-mRNA-1
chr7_3 five_prime_UTR 59572969 59573159 59572969 ID=Msa1113340-mRNA-1:five_prime_utr;Parent=Msa1113340-mRNA-1
chr7_3 five_prime_UTR 59572871 59572900 59572871 ID=Msa1113340-mRNA-1:five_prime_utr;Parent=Msa1113340-mRNA-1
chr7_3 CDS 59572477 59572870 59572477 ID=Msa1113340-mRNA-1:cds;Parent=Msa1113340-mRNA-1
chr7_3 CDS 59572120 59572389 59572120 ID=Msa1113340-mRNA-1:cds;Parent=Msa1113340-mRNA-1
chr7_3 CDS 59570634 59571319 59570634 ID=Msa1113340-mRNA-1:cds;Parent=Msa1113340-mRNA-1
chr7_3 three_prime_UTR 59570080 59570633 59570080 ID=Msa1113340-mRNA-1:three_prime_utr;Parent=Msa1113340-mRNA-1
Gene Sequence

>Msa1113340

ATGAGAGAAATTCTTCATGTTCAAGGAGGACAATGCGGGAACCAGATCGGTTCAAAATTCTGGGAAGTAGTTTGCGACGAGCACGGCATAGATCCAACCGGAAGATACGTCGGAAACTCAGATCTACAACTTGAGCGCGTCAATGTTTACTACAACGAAGCCTCCTGTGGAAGGTTTGTTCCACGCGCCATCCTCATGGACTTGGAGCCTGGTACAATGGACAGTGTTCGCACTGGTCCTTACGGTCAGATCTTCCGTCCTGATAACTTCGTCTTCGGTCAGTCCGGTGCCGGTAACAATTGGGCGAAAGGACATTACACTGAAGGCGCTGAACTTATTGATTCAGTTCTCGATGTTGTTCGTAAAGAAGCTGAGAATTGTGATTGTCTTCAAGGGTTTCAGGTGTGTCATTCATTGGGAGGAGGAACGGGATCTGGAATGGGAACTTTGTTGATTTCGAAGATTAGAGAGGAATATCCTGATAGGATGATGTTGACGTTTTCGGTGTTTCCTTCACCCAAGGTTTCTGATACTGTTGTTGAGCCTTATAATGCTACTCTTTCTGTTCATCAGTTGGTAGAAAATGCTGATGAGTGTATGGTTCTTGATAATGAGGCGCTTTATGATATCTGCTTCAGGACTCTTAAATTGACTACTCCTAGCTTTGGTGACTTGAACCACCTGATCTCAGCAACCATGAGTGGAGTGACTTGCTGTCTTCGTTTCCCTGGTCAACTCAACTCTGATCTCCGGAAACTGGCTGTGAATCTCATCCCATTCCCTCGTCTGCACTTCTTCATGGTCGGTTTTGCTCCTCTCACATCCCGTGGCTCTCAGCAATTCCGTGCATTGACTGTTCCAGAACTCACCCAGCAGATGTGGGATTCCAAGAACATGATGTGTGCTGCTGATCCTAGGCATGGTCGCTACCTCACTGCTTCTGCCATGTTCAGGGGTAAGATGAGCACCAAAGAGGTGGATGAGCAAATGATAAATGTCCAGAACAAGAACTCTTCCTACTTTGTTGAGTGGATCCCAAACAATGTTAAATCAAGTGTTTGTGACATTGCTCCTCGAGGTCTCTCCATGGCCTCCACCTTTATTGGTAACTCAACCTCAATTCAGGAAATGTTTAGGAGGGTGAGCGAGCAATTTACTGCTATGTTTAGGAGGAAGGCTTTCTTGCATTGGTACACTGGTGAAGGCATGGATGAGATGGAATTCACAGAAGCCGAGAGCAACATGAATGACCTCGTGTCTGAGTACCAGCAGTACCAGGATGCCACTGCTGATGAAGAAGGAGAATATGAGGACGACGAGGAAGAGGAGCAAGAGCATGCTTATGAATAA

Protein sequence

>Msa1113340

MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGNSDLQLERVNVYYNEASCGRFVPRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQFRALTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIAPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEEGEYEDDEEEEQEHAYE*