Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0414830 | RHN67987.1 | 57.005 | 207 | 68 | 3 | 55 | 248 | 1187 | 1385 | 4.85e-54 | 214 |
| Msa0414830 | RHN67987.1 | 67.251 | 742 | 153 | 9 | 1 | 721 | 1258 | 1930 | 0.0 | 894 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0414830 | A0A396IYF7 | 57.005 | 207 | 68 | 3 | 55 | 248 | 1187 | 1385 | 2.32e-54 | 214 |
| Msa0414830 | A0A396IYF7 | 67.251 | 742 | 153 | 9 | 1 | 721 | 1258 | 1930 | 0.0 | 894 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0220740 | Msa0414830 | 0.809436 | 1.894020e-50 | -8.615850e-47 |
| Msa0393080 | Msa0414830 | 0.816886 | 4.387637e-52 | -8.615850e-47 |
| Msa0414830 | Msa0440750 | 0.810563 | 1.083409e-50 | -8.615850e-47 |
| Msa0414830 | Msa0629450 | 0.800332 | 1.514751e-48 | -8.615850e-47 |
| Msa0414830 | Msa0909140 | 0.800721 | 1.261707e-48 | -8.615850e-47 |
| Msa0414830 | Msa1070010 | 0.804890 | 1.738357e-49 | -8.615850e-47 |
| Msa0414830 | Msa1372760 | 0.803692 | 3.087665e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0414830 | MtrunA17_Chr3g0108811 | 67.251 | 742 | 153 | 9 | 1 | 721 | 1258 | 1930 | 0.0 | 894 |
| Msa0414830 | MtrunA17_Chr3g0108811 | 57.005 | 207 | 68 | 3 | 55 | 248 | 1187 | 1385 | 4.46e-58 | 214 |
| Msa0414830 | MtrunA17_Chr3g0108821 | 66.522 | 693 | 150 | 11 | 55 | 721 | 1166 | 1802 | 0.0 | 829 |
| Msa0414830 | MtrunA17_Chr3g0108821 | 78.182 | 110 | 24 | 0 | 1 | 110 | 1237 | 1346 | 1.52e-44 | 173 |
| Msa0414830 | MtrunA17_Chr3g0107931 | 55.912 | 685 | 219 | 14 | 85 | 721 | 1238 | 1887 | 0.0 | 642 |
| Msa0414830 | MtrunA17_Chr3g0107931 | 72.727 | 110 | 23 | 1 | 1 | 103 | 1266 | 1375 | 1.06e-39 | 158 |
| Msa0414830 | MtrunA17_Chr3g0091861 | 51.416 | 706 | 214 | 14 | 105 | 713 | 1185 | 1858 | 0.0 | 582 |
| Msa0414830 | MtrunA17_Chr3g0091861 | 71.818 | 110 | 24 | 1 | 1 | 103 | 1193 | 1302 | 3.81e-39 | 156 |
| Msa0414830 | MtrunA17_Chr3g0105521 | 46.144 | 752 | 287 | 16 | 31 | 721 | 911 | 1605 | 2.97e-171 | 532 |
| Msa0414830 | MtrunA17_Chr3g0105521 | 61.682 | 107 | 37 | 1 | 1 | 103 | 1030 | 1136 | 2.04e-30 | 129 |
| Msa0414830 | MtrunA17_Chr3g0105521 | 30.000 | 200 | 120 | 7 | 85 | 274 | 638 | 827 | 8.60e-11 | 65.9 |
| Msa0414830 | MtrunA17_Chr3g0108071 | 43.495 | 784 | 317 | 16 | 5 | 698 | 214 | 961 | 5.34e-168 | 508 |
| Msa0414830 | MtrunA17_Chr3g0108071 | 35.468 | 609 | 233 | 19 | 31 | 548 | 213 | 752 | 5.45e-67 | 238 |
| Msa0414830 | MtrunA17_Chr3g0108071 | 84.466 | 103 | 16 | 0 | 1 | 103 | 385 | 487 | 5.74e-47 | 179 |
| Msa0414830 | MtrunA17_Chr3g0108171 | 52.174 | 598 | 182 | 15 | 55 | 567 | 1053 | 1631 | 7.58e-164 | 518 |
| Msa0414830 | MtrunA17_Chr3g0108171 | 57.064 | 361 | 130 | 6 | 382 | 721 | 1611 | 1967 | 9.70e-103 | 346 |
| Msa0414830 | MtrunA17_Chr3g0108111 | 63.750 | 400 | 114 | 5 | 85 | 464 | 161 | 549 | 4.98e-159 | 473 |
| Msa0414830 | MtrunA17_Chr3g0108111 | 77.273 | 110 | 18 | 1 | 1 | 103 | 189 | 298 | 2.16e-44 | 169 |
| Msa0414830 | MtrunA17_Chr3g0108151 | 78.689 | 305 | 26 | 4 | 441 | 721 | 1254 | 1543 | 5.89e-144 | 458 |
| Msa0414830 | MtrunA17_Chr3g0108151 | 72.269 | 238 | 66 | 0 | 85 | 322 | 983 | 1220 | 8.01e-103 | 345 |
| Msa0414830 | MtrunA17_Chr3g0108151 | 78.378 | 111 | 16 | 1 | 1 | 103 | 1011 | 1121 | 1.77e-43 | 169 |
| Msa0414830 | MtrunA17_Chr3g0108011 | 42.130 | 648 | 184 | 15 | 5 | 487 | 1085 | 1706 | 1.26e-121 | 399 |
| Msa0414830 | MtrunA17_Chr3g0108011 | 73.228 | 127 | 26 | 1 | 1 | 127 | 1261 | 1379 | 2.27e-46 | 178 |
| Msa0414830 | MtrunA17_Chr3g0108091 | 44.656 | 524 | 235 | 10 | 202 | 698 | 3 | 498 | 6.30e-119 | 366 |
| Msa0414830 | MtrunA17_Chr3g0105591 | 46.953 | 443 | 160 | 13 | 329 | 721 | 18 | 435 | 1.18e-97 | 308 |
| Msa0414830 | MtrunA17_Chr3g0105471 | 66.397 | 247 | 77 | 2 | 480 | 721 | 1 | 246 | 1.44e-96 | 298 |
| Msa0414830 | MtrunA17_Chr3g0107261 | 56.552 | 290 | 105 | 4 | 453 | 721 | 110 | 399 | 6.15e-94 | 297 |
| Msa0414830 | MtrunA17_Chr3g0107271 | 63.968 | 247 | 69 | 5 | 85 | 331 | 16 | 242 | 1.25e-92 | 288 |
| Msa0414830 | MtrunA17_Chr3g0107271 | 63.433 | 134 | 34 | 2 | 1 | 127 | 41 | 166 | 8.50e-44 | 158 |
| Msa0414830 | MtrunA17_Chr3g0097011 | 52.848 | 316 | 108 | 7 | 423 | 721 | 106 | 397 | 2.27e-86 | 277 |
| Msa0414830 | MtrunA17_Chr3g0105481 | 38.131 | 535 | 242 | 13 | 28 | 531 | 958 | 1434 | 5.82e-84 | 291 |
| Msa0414830 | MtrunA17_Chr3g0105481 | 63.551 | 107 | 35 | 1 | 1 | 103 | 1062 | 1168 | 1.83e-33 | 138 |
| Msa0414830 | MtrunA17_Chr2g0304131 | 57.463 | 268 | 88 | 5 | 480 | 721 | 48 | 315 | 1.93e-83 | 267 |
| Msa0414830 | MtrunA17_Chr7g0223911 | 93.284 | 134 | 9 | 0 | 588 | 721 | 27 | 160 | 1.14e-82 | 259 |
| Msa0414830 | MtrunA17_Chr3g0105551 | 49.347 | 383 | 112 | 8 | 408 | 721 | 1495 | 1864 | 8.23e-82 | 285 |
| Msa0414830 | MtrunA17_Chr3g0105551 | 45.897 | 329 | 116 | 5 | 28 | 300 | 1016 | 1338 | 4.96e-71 | 253 |
| Msa0414830 | MtrunA17_Chr3g0105551 | 66.355 | 107 | 32 | 1 | 1 | 103 | 1148 | 1254 | 1.62e-35 | 145 |
| Msa0414830 | MtrunA17_Chr3g0105551 | 30.808 | 198 | 121 | 6 | 85 | 274 | 756 | 945 | 4.00e-11 | 67.0 |
| Msa0414830 | MtrunA17_Chr3g0105601 | 43.411 | 387 | 139 | 9 | 32 | 381 | 159 | 502 | 2.73e-77 | 257 |
| Msa0414830 | MtrunA17_Chr3g0105601 | 61.682 | 107 | 37 | 1 | 1 | 103 | 268 | 374 | 9.55e-32 | 130 |
| Msa0414830 | MtrunA17_Chr3g0108761 | 67.010 | 194 | 43 | 2 | 535 | 721 | 1 | 180 | 4.43e-76 | 242 |
| Msa0414830 | MtrunA17_Chr3g0097601 | 56.250 | 240 | 96 | 3 | 85 | 317 | 17 | 254 | 1.32e-74 | 242 |
| Msa0414830 | MtrunA17_Chr3g0097601 | 63.964 | 111 | 32 | 2 | 1 | 103 | 44 | 154 | 5.37e-33 | 128 |
| Msa0414830 | MtrunA17_Chr3g0091851 | 34.195 | 658 | 329 | 20 | 88 | 721 | 738 | 1315 | 1.60e-72 | 256 |
| Msa0414830 | MtrunA17_Chr3g0107641 | 64.948 | 194 | 59 | 3 | 535 | 721 | 1 | 192 | 1.58e-70 | 228 |
| Msa0414830 | MtrunA17_Chr3g0087641 | 47.020 | 302 | 102 | 10 | 407 | 671 | 66 | 346 | 3.83e-63 | 214 |
| Msa0414830 | MtrunA17_Chr3g0105501 | 58.763 | 194 | 64 | 5 | 113 | 301 | 1 | 183 | 1.26e-62 | 208 |
| Msa0414830 | MtrunA17_Chr3g0105501 | 60.748 | 107 | 38 | 1 | 1 | 103 | 1 | 107 | 2.50e-34 | 130 |
| Msa0414830 | MtrunA17_Chr3g0096701 | 38.250 | 400 | 194 | 11 | 141 | 530 | 39 | 395 | 2.95e-60 | 216 |
| Msa0414830 | MtrunA17_Chr3g0096701 | 65.060 | 83 | 21 | 1 | 29 | 103 | 39 | 121 | 6.73e-23 | 104 |
| Msa0414830 | MtrunA17_Chr3g0096771 | 49.798 | 247 | 82 | 6 | 494 | 721 | 66 | 289 | 2.85e-57 | 196 |
| Msa0414830 | MtrunA17_Chr3g0107171 | 45.016 | 311 | 112 | 9 | 438 | 721 | 105 | 383 | 4.30e-57 | 199 |
| Msa0414830 | MtrunA17_Chr3g0107081 | 60.123 | 163 | 53 | 2 | 141 | 303 | 34 | 184 | 5.59e-55 | 187 |
| Msa0414830 | MtrunA17_Chr3g0107081 | 65.000 | 80 | 25 | 1 | 24 | 103 | 29 | 105 | 4.26e-24 | 101 |
| Msa0414830 | MtrunA17_Chr2g0288311 | 57.803 | 173 | 40 | 4 | 153 | 324 | 30 | 170 | 4.09e-47 | 164 |
| Msa0414830 | MtrunA17_Chr2g0288311 | 60.227 | 88 | 24 | 3 | 41 | 125 | 30 | 109 | 1.62e-20 | 89.7 |
| Msa0414830 | MtrunA17_Chr1g0160951 | 36.015 | 261 | 154 | 7 | 85 | 337 | 1008 | 1263 | 4.22e-36 | 147 |
| Msa0414830 | MtrunA17_Chr1g0160951 | 39.316 | 117 | 64 | 1 | 1 | 110 | 1037 | 1153 | 2.57e-17 | 87.0 |
| Msa0414830 | MtrunA17_Chr1g0160951 | 24.765 | 319 | 162 | 10 | 19 | 312 | 725 | 990 | 1.63e-14 | 77.8 |
| Msa0414830 | MtrunA17_Chr7g0229711 | 47.742 | 155 | 58 | 3 | 559 | 713 | 5 | 136 | 5.79e-33 | 124 |
| Msa0414830 | MtrunA17_Chr3g0096801 | 42.169 | 166 | 66 | 3 | 219 | 381 | 2 | 140 | 8.59e-31 | 118 |
| Msa0414830 | MtrunA17_Chr3g0107201 | 35.333 | 300 | 138 | 9 | 219 | 500 | 2 | 263 | 1.55e-28 | 121 |
| Msa0414830 | MtrunA17_Chr5g0439121 | 34.783 | 253 | 138 | 9 | 87 | 317 | 1293 | 1540 | 2.78e-26 | 115 |
| Msa0414830 | MtrunA17_Chr5g0439121 | 44.792 | 96 | 48 | 1 | 13 | 103 | 1334 | 1429 | 9.13e-16 | 82.0 |
| Msa0414830 | MtrunA17_Chr5g0439121 | 26.568 | 271 | 169 | 8 | 28 | 274 | 971 | 1235 | 3.49e-14 | 77.0 |
| Msa0414830 | MtrunA17_Chr5g0439121 | 29.655 | 145 | 92 | 2 | 138 | 274 | 779 | 921 | 1.56e-12 | 71.6 |
| Msa0414830 | MtrunA17_Chr3g0112521 | 66.197 | 71 | 24 | 0 | 643 | 713 | 6 | 76 | 3.94e-25 | 99.4 |
| Msa0414830 | MtrunA17_Chr3g0100261 | 30.128 | 312 | 160 | 10 | 29 | 286 | 901 | 1208 | 3.85e-24 | 108 |
| Msa0414830 | MtrunA17_Chr3g0100241 | 37.912 | 182 | 100 | 7 | 135 | 307 | 37 | 214 | 5.24e-24 | 100 |
| Msa0414830 | MtrunA17_Chr3g0100241 | 41.441 | 111 | 56 | 4 | 2 | 103 | 11 | 121 | 1.09e-13 | 70.9 |
| Msa0414830 | MtrunA17_Chr8g0360991 | 27.875 | 287 | 184 | 7 | 28 | 297 | 928 | 1208 | 9.03e-21 | 98.2 |
| Msa0414830 | MtrunA17_Chr3g0105491 | 60.274 | 73 | 22 | 1 | 656 | 721 | 1 | 73 | 1.28e-19 | 83.6 |
| Msa0414830 | MtrunA17_Chr3g0099591 | 27.922 | 308 | 166 | 11 | 22 | 277 | 889 | 1192 | 1.38e-19 | 94.4 |
| Msa0414830 | MtrunA17_Chr5g0443761 | 26.421 | 299 | 182 | 8 | 31 | 309 | 818 | 1098 | 4.64e-18 | 89.4 |
| Msa0414830 | MtrunA17_Chr3g0109131 | 57.895 | 76 | 25 | 1 | 653 | 721 | 97 | 172 | 8.94e-18 | 81.6 |
| Msa0414830 | MtrunA17_Chr3g0108201 | 46.667 | 120 | 43 | 3 | 467 | 565 | 1 | 120 | 9.38e-18 | 80.9 |
| Msa0414830 | MtrunA17_Chr2g0313491 | 29.773 | 309 | 169 | 14 | 22 | 296 | 825 | 1119 | 1.33e-16 | 84.7 |
| Msa0414830 | MtrunA17_Chr2g0313311 | 28.077 | 260 | 155 | 6 | 22 | 253 | 825 | 1080 | 4.22e-16 | 83.2 |
| Msa0414830 | MtrunA17_Chr2g0313351 | 26.019 | 319 | 180 | 9 | 22 | 285 | 829 | 1146 | 4.39e-14 | 76.6 |
| Msa0414830 | MtrunA17_Chr2g0313351 | 26.471 | 306 | 171 | 8 | 29 | 298 | 955 | 1242 | 1.03e-11 | 68.9 |
| Msa0414830 | MtrunA17_Chr2g0313591 | 29.642 | 307 | 161 | 10 | 22 | 276 | 825 | 1128 | 5.15e-14 | 76.3 |
| Msa0414830 | MtrunA17_Chr1g0167981 | 25.387 | 323 | 191 | 9 | 22 | 296 | 817 | 1137 | 6.88e-14 | 75.9 |
| Msa0414830 | MtrunA17_Chr2g0313461 | 31.102 | 254 | 144 | 8 | 22 | 251 | 825 | 1071 | 1.92e-13 | 74.3 |
| Msa0414830 | MtrunA17_Chr3g0106021 | 55.385 | 65 | 29 | 0 | 92 | 156 | 323 | 387 | 6.32e-13 | 71.2 |
| Msa0414830 | MtrunA17_Chr8g0348201 | 27.391 | 230 | 134 | 9 | 58 | 276 | 751 | 958 | 1.04e-11 | 68.9 |
| Msa0414830 | MtrunA17_Chr3g0107181 | 25.097 | 259 | 135 | 7 | 28 | 272 | 722 | 935 | 1.67e-11 | 67.8 |
| Msa0414830 | MtrunA17_Chr2g0313541 | 24.784 | 347 | 186 | 9 | 22 | 297 | 821 | 1163 | 4.95e-11 | 66.6 |
| Msa0414830 | MtrunA17_Chr1g0163641 | 25.926 | 270 | 157 | 6 | 22 | 249 | 94 | 362 | 5.70e-11 | 65.5 |
| Msa0414830 | MtrunA17_Chr2g0313331 | 27.055 | 292 | 147 | 10 | 22 | 253 | 507 | 792 | 8.66e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 109 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAAAATCTTTAGAGGTTTC+TGG | 0.173554 | 3_2:-60683068 | None:intergenic |
| CTCATTCTTTGTTGGTGAAT+TGG | 0.229510 | 3_2:-60683677 | None:intergenic |
| ATTCTTCAAAACAGCTTTAG+AGG | 0.240828 | 3_2:-60684708 | None:intergenic |
| CTCACAATCCAAATGATTCT+TGG | 0.247781 | 3_2:-60684297 | None:intergenic |
| GACAAGAAGGTATGGCTATT+TGG | 0.278704 | 3_2:-60683827 | None:intergenic |
| TTTGTTGCTATTTCTAAATC+AGG | 0.300619 | 3_2:-60683285 | None:intergenic |
| TCTTGAGGCAATGGAATGAT+AGG | 0.308034 | 3_2:-60684095 | None:intergenic |
| TTCCTTGGTAACTTGTTGCT+TGG | 0.311970 | 3_2:-60684615 | None:intergenic |
| TCTTGAGATATTTGTATATC+AGG | 0.318289 | 3_2:-60684569 | None:intergenic |
| CTCAGCGGCAAAATCTTTAG+AGG | 0.322520 | 3_2:-60683075 | None:intergenic |
| GCATATAATTGAAGATGATT+TGG | 0.325441 | 3_2:+60681889 | Msa0414830:CDS |
| GCATATAATTGAAGATGATT+TGG | 0.325441 | 3_2:+60682225 | Msa0414830:CDS |
| AGAGGATTTGTTATGGCAAT+AGG | 0.341898 | 3_2:-60683849 | None:intergenic |
| CAGCTTGAAATTGAATTCCT+TGG | 0.344164 | 3_2:-60682510 | None:intergenic |
| ACAACAAGTGTATTTAACTT+TGG | 0.353176 | 3_2:-60681935 | None:intergenic |
| CATAGTGTCTTGGATGTATT+AGG | 0.356946 | 3_2:+60684449 | Msa0414830:CDS |
| CAACAAGTGTATTTAACTTT+GGG | 0.358379 | 3_2:-60681934 | None:intergenic |
| TACCGTTTGGAAGCTCTGTT+TGG | 0.365102 | 3_2:+60682972 | Msa0414830:CDS |
| AGTATAGTCTAATAGCCAAT+AGG | 0.373005 | 3_2:-60684761 | None:intergenic |
| ACAGCATATGAACTTATGTT+TGG | 0.381038 | 3_2:+60682009 | Msa0414830:CDS |
| AATACCACATATTCTAGATA+TGG | 0.387119 | 3_2:-60682460 | None:intergenic |
| CTACTAGATGCGCGCAACTT+TGG | 0.387519 | 3_2:+60684500 | Msa0414830:CDS |
| TTACAAATGGAAGCTCTGTT+TGG | 0.392421 | 3_2:+60682999 | Msa0414830:CDS |
| AGCTTGAAATTGAATTCCTT+GGG | 0.394218 | 3_2:-60682509 | None:intergenic |
| GGGATGTGCCTACAACTTAC+TGG | 0.398189 | 3_2:+60684400 | Msa0414830:CDS |
| ACTAGTCTCCAAGAATCATT+TGG | 0.400921 | 3_2:+60684289 | Msa0414830:CDS |
| GTATAGTCTAATAGCCAATA+GGG | 0.401506 | 3_2:-60684760 | None:intergenic |
| ACAAGTTTATGCTCTTTCTC+TGG | 0.405891 | 3_2:-60683252 | None:intergenic |
| ATAGCTGGCTCATTCTTTGT+TGG | 0.410532 | 3_2:-60683685 | None:intergenic |
| ATGCAACACTTCAACTTCCT+TGG | 0.414911 | 3_2:-60684630 | None:intergenic |
| AGCTCTTTACATATGGAGAT+TGG | 0.415026 | 3_2:-60682349 | None:intergenic |
| TGTTGTAGACATAAAATTTG+AGG | 0.426586 | 3_2:-60682260 | None:intergenic |
| TTCAACTTCCTCACCAATTG+AGG | 0.427859 | 3_2:-60684045 | None:intergenic |
| CTCATGCCACTCTGAATTTG+TGG | 0.434852 | 3_2:+60684472 | Msa0414830:CDS |
| CTCAGGAAGCTCTTTACATA+TGG | 0.440329 | 3_2:-60682356 | None:intergenic |
| TAGCTCAGCCAGTAAGTTGT+AGG | 0.440715 | 3_2:-60684408 | None:intergenic |
| GTCATAAAAGTAACCTCAAT+TGG | 0.442420 | 3_2:+60684032 | Msa0414830:CDS |
| TCGGACATTCAGATACCGTT+TGG | 0.443703 | 3_2:+60682959 | Msa0414830:CDS |
| ATAGGGGACAGCTTAGAATC+TGG | 0.444542 | 3_2:-60684077 | None:intergenic |
| GCATAACAAAGCAGCAATGA+TGG | 0.455075 | 3_2:-60684800 | None:intergenic |
| ATTCTTTGTTGGTGAATTGG+TGG | 0.457060 | 3_2:-60683674 | None:intergenic |
| AGGCAGAACATTCAAATGAA+TGG | 0.458096 | 3_2:-60682035 | None:intergenic |
| ATGGAGCAGCAACGTCTACT+TGG | 0.458822 | 3_2:+60683425 | Msa0414830:CDS |
| TACTGCAGTCAAACCTTCTC+AGG | 0.465888 | 3_2:+60683457 | Msa0414830:CDS |
| ATCATTAGACACTGTAGCTC+AGG | 0.466361 | 3_2:-60682373 | None:intergenic |
| GGATGAGAAATGACGAAACT+TGG | 0.469765 | 3_2:-60684872 | None:intergenic |
| TATGTATGTTACATTAATGA+AGG | 0.470347 | 3_2:+60684953 | Msa0414830:three_prime_UTR |
| GCCATGGGTTCTACTACATC+AGG | 0.474397 | 3_2:+60683628 | Msa0414830:CDS |
| ATGACGAAACTTGGCATCCA+AGG | 0.477255 | 3_2:-60684863 | None:intergenic |
| GTTTGAAATTCTTGAGGCAA+TGG | 0.479753 | 3_2:-60684104 | None:intergenic |
| CCAAGACACTATGAGTTTCA+AGG | 0.479878 | 3_2:-60684439 | None:intergenic |
| AAGTAGAAAGATCAAATTCA+AGG | 0.481982 | 3_2:-60682594 | None:intergenic |
| GAGAATTTATCTCTGTTGAC+TGG | 0.483454 | 3_2:+60684317 | Msa0414830:CDS |
| ATTACCACTATCGTGACCTT+CGG | 0.486325 | 3_2:-60683039 | None:intergenic |
| AGTGGTAAGAGGATTTGTTA+TGG | 0.487777 | 3_2:-60683856 | None:intergenic |
| CACAATTAGCTGCAGGCCAT+GGG | 0.490417 | 3_2:+60683613 | Msa0414830:intron |
| CCTTGAAACTCATAGTGTCT+TGG | 0.491342 | 3_2:+60684439 | Msa0414830:CDS |
| CGCCATGAGATTTAATTCCA+AGG | 0.493836 | 3_2:-60684980 | None:intergenic |
| ATTACATGATTTACCTGAGA+AGG | 0.499290 | 3_2:-60683470 | None:intergenic |
| TCAACATCCTGAGTGGTAAG+AGG | 0.506711 | 3_2:-60683867 | None:intergenic |
| GGAGTAACTACTTGTATAGC+TGG | 0.507809 | 3_2:-60683700 | None:intergenic |
| TCCTGATGTAGTAGAACCCA+TGG | 0.512781 | 3_2:-60683629 | None:intergenic |
| TCTGTTTGGACAATTACAAA+TGG | 0.513240 | 3_2:+60682986 | Msa0414830:CDS |
| GATAATAGAAGCAGATGAGC+TGG | 0.517285 | 3_2:+60682393 | Msa0414830:CDS |
| TCTGTTTGGACAATTACAAA+TGG | 0.520060 | 3_2:+60683013 | Msa0414830:CDS |
| GAAGAATATAATTCAACAAG+AGG | 0.523258 | 3_2:+60684724 | Msa0414830:CDS |
| ATTAACATCAATGATGATCA+AGG | 0.525854 | 3_2:+60683891 | Msa0414830:CDS |
| CCTTGGGCATGACAGAGGCT+TGG | 0.527248 | 3_2:-60682493 | None:intergenic |
| TGAAGGTCATGATGAGAAAG+TGG | 0.528097 | 3_2:+60682432 | Msa0414830:CDS |
| TTGTCATTTAAATGAACAGA+AGG | 0.530255 | 3_2:-60684356 | None:intergenic |
| GGCAATAGGACAAGAAGGTA+TGG | 0.530338 | 3_2:-60683835 | None:intergenic |
| GTTGGATAGTGTTGAAAGGA+GGG | 0.533438 | 3_2:+60684538 | Msa0414830:CDS |
| CTTGAGGCAATGGAATGATA+GGG | 0.533766 | 3_2:-60684094 | None:intergenic |
| GCCATGAGATTTAATTCCAA+GGG | 0.537995 | 3_2:-60684979 | None:intergenic |
| ACCCTTGGAATTAAATCTCA+TGG | 0.538811 | 3_2:+60684978 | Msa0414830:three_prime_UTR |
| AAAGTTAAATACACTTGTTG+TGG | 0.540071 | 3_2:+60681937 | Msa0414830:CDS |
| GAGACCGAAGGTCACGATAG+TGG | 0.543517 | 3_2:+60683035 | Msa0414830:CDS |
| TACACTGCGTAATAGATACA+AGG | 0.546061 | 3_2:+60684379 | Msa0414830:CDS |
| TTTGAATTTGTGTAGGAATG+TGG | 0.547333 | 3_2:+60683798 | Msa0414830:intron |
| GGTTGGATAGTGTTGAAAGG+AGG | 0.552504 | 3_2:+60684537 | Msa0414830:CDS |
| GTTATGGCAATAGGACAAGA+AGG | 0.559267 | 3_2:-60683840 | None:intergenic |
| GATTCCATATCTAGAATATG+TGG | 0.561350 | 3_2:+60682456 | Msa0414830:CDS |
| ACTACTTCGATGCTATCTAA+AGG | 0.563661 | 3_2:+60684125 | Msa0414830:CDS |
| ACATTAATGAAGGTAACCCT+TGG | 0.567001 | 3_2:+60684963 | Msa0414830:three_prime_UTR |
| GTCCAAACAGAGCTTCCAAA+CGG | 0.571084 | 3_2:-60682974 | None:intergenic |
| ACTTTATGTCATGACATCTA+CGG | 0.577759 | 3_2:+60682613 | Msa0414830:CDS |
| GTTGATGAATGAACAATCGA+TGG | 0.580690 | 3_2:+60683406 | Msa0414830:CDS |
| GCTCGTCAAGAGTGAGCTTG+AGG | 0.580728 | 3_2:+60684265 | Msa0414830:CDS |
| AACAAATCCTCTTACCACTC+AGG | 0.586889 | 3_2:+60683860 | Msa0414830:CDS |
| CCAAGCCTCTGTCATGCCCA+AGG | 0.590651 | 3_2:+60682493 | Msa0414830:CDS |
| GAATTCCTTGGGCATGACAG+AGG | 0.598788 | 3_2:-60682498 | None:intergenic |
| GAATATAATTCAACAAGAGG+CGG | 0.605057 | 3_2:+60684727 | Msa0414830:CDS |
| TGACGAAACTTGGCATCCAA+GGG | 0.608958 | 3_2:-60684862 | None:intergenic |
| ATTGGTTGGATAGTGTTGAA+AGG | 0.612261 | 3_2:+60684534 | Msa0414830:CDS |
| GATGAAATATTTGCAAGTGA+AGG | 0.617442 | 3_2:+60682415 | Msa0414830:CDS |
| GAAGTAGTTTGAAATTCTTG+AGG | 0.623707 | 3_2:-60684110 | None:intergenic |
| AAAAGTAACCTCAATTGGTG+AGG | 0.633132 | 3_2:+60684037 | Msa0414830:CDS |
| TTGAGGCAATGGAATGATAG+GGG | 0.634926 | 3_2:-60684093 | None:intergenic |
| TGCTTTAACTTCAACCTCAG+CGG | 0.638780 | 3_2:-60683090 | None:intergenic |
| ACACGGGTTGACTTCTCCAA+AGG | 0.639327 | 3_2:+60683121 | Msa0414830:CDS |
| AAGATCAAATTCAAGGTCTG+CGG | 0.641728 | 3_2:-60682587 | None:intergenic |
| GTCCAAGCAACAAGTTACCA+AGG | 0.643272 | 3_2:+60684613 | Msa0414830:CDS |
| TATAGTCTAATAGCCAATAG+GGG | 0.646833 | 3_2:-60684759 | None:intergenic |
| GTTAATATCAACATCCTGAG+TGG | 0.659150 | 3_2:-60683874 | None:intergenic |
| GTTAAAGCATCATCAGAACA+CGG | 0.665065 | 3_2:+60683104 | Msa0414830:CDS |
| TTAAAGCATCATCAGAACAC+GGG | 0.672660 | 3_2:+60683105 | Msa0414830:CDS |
| CAATTACAAATGGAGACCGA+AGG | 0.679008 | 3_2:+60683023 | Msa0414830:CDS |
| ACACTGCGTAATAGATACAA+GGG | 0.688902 | 3_2:+60684380 | Msa0414830:CDS |
| GTAGCTCCACAAATTCAGAG+TGG | 0.773151 | 3_2:-60684478 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTTTAAAAGCTTTATT+TGG | + | chr3_2:60684168-60684187 | Msa0414830:intron | 10.0% |
| !!! | TGTAATAGTTTTAAAAACAT+TGG | - | chr3_2:60682651-60682670 | None:intergenic | 15.0% |
| !!! | TTTTTAAAACTATTACATCT+TGG | + | chr3_2:60682654-60682673 | Msa0414830:intron | 15.0% |
| !!! | TATAATATTTTGATGTAGAT+CGG | + | chr3_2:60682940-60682959 | Msa0414830:intron | 15.0% |
| !! | TTACATCAATTAAATATCTA+AGG | - | chr3_2:60683343-60683362 | None:intergenic | 15.0% |
| !! | ATTAAACTTCAAAATGAAAA+TGG | - | chr3_2:60683966-60683985 | None:intergenic | 15.0% |
| !!! | AGCTTTTAAAATAAAATGAA+GGG | - | chr3_2:60684163-60684182 | None:intergenic | 15.0% |
| !!! | AAGCTTTTAAAATAAAATGA+AGG | - | chr3_2:60684164-60684183 | None:intergenic | 15.0% |
| !!! | TTTTTAATTCTGTAAGGTTT+TGG | - | chr3_2:60681769-60681788 | None:intergenic | 20.0% |
| !!! | TTTTCTCTACTTCTATAATA+AGG | + | chr3_2:60681816-60681835 | Msa0414830:CDS | 20.0% |
| !!! | TTTTTAATTCTGTAAGGTTT+TGG | - | chr3_2:60681769-60681788 | None:intergenic | 20.0% |
| !!! | TTTTCTCTACTTCTATAATA+AGG | + | chr3_2:60681816-60681835 | Msa0414830:CDS | 20.0% |
| !!! | ATAGTTTTAAAAACATTGGA+TGG | - | chr3_2:60682647-60682666 | None:intergenic | 20.0% |
| !! | TCGTAAAAATGTAAATTAGT+TGG | - | chr3_2:60683591-60683610 | None:intergenic | 20.0% |
| !! | TTGTTTATTTGAATTTGTGT+AGG | + | chr3_2:60683791-60683810 | Msa0414830:intron | 20.0% |
| !! | ATTTACAGAAACTGAATAAA+AGG | - | chr3_2:60684003-60684022 | None:intergenic | 20.0% |
| !! | TAAAAAATATTGAAGGACAA+AGG | - | chr3_2:60684841-60684860 | None:intergenic | 20.0% |
| !!! | TAAGACATTTTAGTTCTTTT+CGG | - | chr3_2:60684896-60684915 | None:intergenic | 20.0% |
| !! | TATGTATGTTACATTAATGA+AGG | + | chr3_2:60684953-60684972 | Msa0414830:three_prime_UTR | 20.0% |
| !!! | GCTTGATTTTTAATTCTGTA+AGG | - | chr3_2:60681775-60681794 | None:intergenic | 25.0% |
| ! | GCATATAATTGAAGATGATT+TGG | + | chr3_2:60681889-60681908 | Msa0414830:CDS | 25.0% |
| !! | CAACAAGTGTATTTAACTTT+GGG | - | chr3_2:60681937-60681956 | None:intergenic | 25.0% |
| !! | ACAACAAGTGTATTTAACTT+TGG | - | chr3_2:60681938-60681957 | None:intergenic | 25.0% |
| !! | AAAGTTAAATACACTTGTTG+TGG | + | chr3_2:60681937-60681956 | Msa0414830:CDS | 25.0% |
| !!! | GCTTGATTTTTAATTCTGTA+AGG | - | chr3_2:60681775-60681794 | None:intergenic | 25.0% |
| ! | GCATATAATTGAAGATGATT+TGG | + | chr3_2:60681889-60681908 | Msa0414830:CDS | 25.0% |
| ! | TGTTGTAGACATAAAATTTG+AGG | - | chr3_2:60682263-60682282 | None:intergenic | 25.0% |
| ! | AATACCACATATTCTAGATA+TGG | - | chr3_2:60682463-60682482 | None:intergenic | 25.0% |
| ! | AAGTAGAAAGATCAAATTCA+AGG | - | chr3_2:60682597-60682616 | None:intergenic | 25.0% |
| ! | GCATGCATTAATATTGTTAA+AGG | + | chr3_2:60682694-60682713 | Msa0414830:intron | 25.0% |
| !!! | AATTGAATCTTCTAAAGTAG+CGG | + | chr3_2:60682725-60682744 | Msa0414830:intron | 25.0% |
| !!! | CATAAGTATTTCTAAAGTAG+CGG | + | chr3_2:60682763-60682782 | Msa0414830:intron | 25.0% |
| ! | TGATGATATACAATTGAAAG+TGG | + | chr3_2:60682865-60682884 | Msa0414830:intron | 25.0% |
| !!! | TTTGTTGCTATTTCTAAATC+AGG | - | chr3_2:60683288-60683307 | None:intergenic | 25.0% |
| ! | ATATCTAAGGAAATTTGACA+TGG | - | chr3_2:60683330-60683349 | None:intergenic | 25.0% |
| !! | AAAGTGTCAAAAAGAATACT+AGG | - | chr3_2:60683728-60683747 | None:intergenic | 25.0% |
| ! | ATTAACATCAATGATGATCA+AGG | + | chr3_2:60683891-60683910 | Msa0414830:CDS | 25.0% |
| ! | ACTAATTCTTCTTTACTTTC+AGG | + | chr3_2:60684203-60684222 | Msa0414830:intron | 25.0% |
| !!! | AATCTTCTACTTTTTGAGAA+GGG | - | chr3_2:60684232-60684251 | None:intergenic | 25.0% |
| !!! | AAATCTTCTACTTTTTGAGA+AGG | - | chr3_2:60684233-60684252 | None:intergenic | 25.0% |
| !! | TTGTCATTTAAATGAACAGA+AGG | - | chr3_2:60684359-60684378 | None:intergenic | 25.0% |
| ! | TCTTGAGATATTTGTATATC+AGG | - | chr3_2:60684572-60684591 | None:intergenic | 25.0% |
| ! | GAAGAATATAATTCAACAAG+AGG | + | chr3_2:60684724-60684743 | Msa0414830:CDS | 25.0% |
| !!! | TTTGTTATGCTTTTCATTGT+GGG | + | chr3_2:60684813-60684832 | Msa0414830:three_prime_UTR | 25.0% |
| ! | CAAGGGATAAAAAATATTGA+AGG | - | chr3_2:60684848-60684867 | None:intergenic | 25.0% |
| !!! | CTTCAATATTTTTTATCCCT+TGG | + | chr3_2:60684846-60684865 | Msa0414830:three_prime_UTR | 25.0% |
| !!! | AATTTTTAGGACCCACAAAA+AGG | - | chr3_2:60681736-60681755 | None:intergenic | 30.0% |
| !!! | TAATTCTGTAAGGTTTTGGA+GGG | - | chr3_2:60681765-60681784 | None:intergenic | 30.0% |
| !! | TTAATTCTGTAAGGTTTTGG+AGG | - | chr3_2:60681766-60681785 | None:intergenic | 30.0% |
| ! | ATTTTCATAGTAAGCAACTG+TGG | - | chr3_2:60681848-60681867 | None:intergenic | 30.0% |
| ACAGCATATGAACTTATGTT+TGG | + | chr3_2:60682009-60682028 | Msa0414830:CDS | 30.0% | |
| !!! | TAATTCTGTAAGGTTTTGGA+GGG | - | chr3_2:60681765-60681784 | None:intergenic | 30.0% |
| !! | TTAATTCTGTAAGGTTTTGG+AGG | - | chr3_2:60681766-60681785 | None:intergenic | 30.0% |
| ! | ATTTTCATAGTAAGCAACTG+TGG | - | chr3_2:60681848-60681867 | None:intergenic | 30.0% |
| GATGAAATATTTGCAAGTGA+AGG | + | chr3_2:60682415-60682434 | Msa0414830:CDS | 30.0% | |
| ! | GATTCCATATCTAGAATATG+TGG | + | chr3_2:60682456-60682475 | Msa0414830:CDS | 30.0% |
| AGCTTGAAATTGAATTCCTT+GGG | - | chr3_2:60682512-60682531 | None:intergenic | 30.0% | |
| ACTTTATGTCATGACATCTA+CGG | + | chr3_2:60682613-60682632 | Msa0414830:CDS | 30.0% | |
| TCTGTTTGGACAATTACAAA+TGG | + | chr3_2:60682986-60683005 | Msa0414830:CDS | 30.0% | |
| TCTGTTTGGACAATTACAAA+TGG | + | chr3_2:60682986-60683005 | Msa0414830:CDS | 30.0% | |
| !! | AATAGATTGGTATTGACCTT+TGG | - | chr3_2:60683140-60683159 | None:intergenic | 30.0% |
| GTAAGCTTGAATCAATAGAT+TGG | - | chr3_2:60683153-60683172 | None:intergenic | 30.0% | |
| ! | ACGTTGATTAAATTCTGATG+CGG | - | chr3_2:60683175-60683194 | None:intergenic | 30.0% |
| ACAAATCCAGAAGTAACTTT+CGG | + | chr3_2:60683303-60683322 | Msa0414830:intron | 30.0% | |
| ! | AATGCTTCTGTTCTTTTTAC+AGG | + | chr3_2:60683382-60683401 | Msa0414830:intron | 30.0% |
| ATTACATGATTTACCTGAGA+AGG | - | chr3_2:60683473-60683492 | None:intergenic | 30.0% | |
| TGTCAAAAAGAATACTAGGA+AGG | - | chr3_2:60683724-60683743 | None:intergenic | 30.0% | |
| TTTGAATTTGTGTAGGAATG+TGG | + | chr3_2:60683798-60683817 | Msa0414830:intron | 30.0% | |
| GTCATAAAAGTAACCTCAAT+TGG | + | chr3_2:60684032-60684051 | Msa0414830:CDS | 30.0% | |
| ! | GAAGTAGTTTGAAATTCTTG+AGG | - | chr3_2:60684113-60684132 | None:intergenic | 30.0% |
| ! | GAACAGAAGGATTTTTAACA+AGG | - | chr3_2:60684346-60684365 | None:intergenic | 30.0% |
| !!! | ACTTTGGTTTTGATAAGGAT+TGG | + | chr3_2:60684516-60684535 | Msa0414830:CDS | 30.0% |
| !! | AGAGATTTTAAGTCAACATG+TGG | + | chr3_2:60684661-60684680 | Msa0414830:CDS | 30.0% |
| ! | ATTCTTCAAAACAGCTTTAG+AGG | - | chr3_2:60684711-60684730 | None:intergenic | 30.0% |
| GAATATAATTCAACAAGAGG+CGG | + | chr3_2:60684727-60684746 | Msa0414830:CDS | 30.0% | |
| TATAGTCTAATAGCCAATAG+GGG | - | chr3_2:60684762-60684781 | None:intergenic | 30.0% | |
| GTATAGTCTAATAGCCAATA+GGG | - | chr3_2:60684763-60684782 | None:intergenic | 30.0% | |
| AGTATAGTCTAATAGCCAAT+AGG | - | chr3_2:60684764-60684783 | None:intergenic | 30.0% | |
| !! | CTTTGTTATGCTTTTCATTG+TGG | + | chr3_2:60684812-60684831 | Msa0414830:three_prime_UTR | 30.0% |
| ! | ACAAAAAGGCATGTCATCAT+AGG | - | chr3_2:60681722-60681741 | None:intergenic | 35.0% |
| ! | TATGATGACATGCCTTTTTG+TGG | + | chr3_2:60681721-60681740 | Msa0414830:CDS | 35.0% |
| ! | ATGATGACATGCCTTTTTGT+GGG | + | chr3_2:60681722-60681741 | Msa0414830:CDS | 35.0% |
| AGGCAGAACATTCAAATGAA+TGG | - | chr3_2:60682038-60682057 | None:intergenic | 35.0% | |
| !!! | AATTTTTGGGACCCACAAAA+AGG | - | chr3_2:60682072-60682091 | None:intergenic | 35.0% |
| ! | TGGAGGGAAAACGAATTTTT+GGG | - | chr3_2:60682085-60682104 | None:intergenic | 35.0% |
| ! | TTGGAGGGAAAACGAATTTT+TGG | - | chr3_2:60682086-60682105 | None:intergenic | 35.0% |
| AGCTCTTTACATATGGAGAT+TGG | - | chr3_2:60682352-60682371 | None:intergenic | 35.0% | |
| CAGCTTGAAATTGAATTCCT+TGG | - | chr3_2:60682513-60682532 | None:intergenic | 35.0% | |
| GAATTGTCAAAAACTCTCTC+TGG | + | chr3_2:60682552-60682571 | Msa0414830:CDS | 35.0% | |
| AAGATCAAATTCAAGGTCTG+CGG | - | chr3_2:60682590-60682609 | None:intergenic | 35.0% | |
| TTACAAATGGAAGCTCTGTT+TGG | + | chr3_2:60682999-60683018 | Msa0414830:CDS | 35.0% | |
| ! | GCAAAATCTTTAGAGGTTTC+TGG | - | chr3_2:60683071-60683090 | None:intergenic | 35.0% |
| ! | GTTAAAGCATCATCAGAACA+CGG | + | chr3_2:60683104-60683123 | Msa0414830:CDS | 35.0% |
| ! | TTAAAGCATCATCAGAACAC+GGG | + | chr3_2:60683105-60683124 | Msa0414830:CDS | 35.0% |
| ACAAGTTTATGCTCTTTCTC+TGG | - | chr3_2:60683255-60683274 | None:intergenic | 35.0% | |
| CAAATCCAGAAGTAACTTTC+GGG | + | chr3_2:60683304-60683323 | Msa0414830:intron | 35.0% | |
| ! | GTTGATGAATGAACAATCGA+TGG | + | chr3_2:60683406-60683425 | Msa0414830:CDS | 35.0% |
| TTAGCACTATATGCACAATG+CGG | - | chr3_2:60683505-60683524 | None:intergenic | 35.0% | |
| ! | ATTCTTTGTTGGTGAATTGG+TGG | - | chr3_2:60683677-60683696 | None:intergenic | 35.0% |
| ! | CTCATTCTTTGTTGGTGAAT+TGG | - | chr3_2:60683680-60683699 | None:intergenic | 35.0% |
| ! | TTTTGACACTTTGTCAATGC+TGG | + | chr3_2:60683736-60683755 | Msa0414830:intron | 35.0% |
| !! | AGAGGATTTGTTATGGCAAT+AGG | - | chr3_2:60683852-60683871 | None:intergenic | 35.0% |
| !! | AGTGGTAAGAGGATTTGTTA+TGG | - | chr3_2:60683859-60683878 | None:intergenic | 35.0% |
| GTTAATATCAACATCCTGAG+TGG | - | chr3_2:60683877-60683896 | None:intergenic | 35.0% | |
| AAAAGTAACCTCAATTGGTG+AGG | + | chr3_2:60684037-60684056 | Msa0414830:CDS | 35.0% | |
| ! | GTTTGAAATTCTTGAGGCAA+TGG | - | chr3_2:60684107-60684126 | None:intergenic | 35.0% |
| ACTACTTCGATGCTATCTAA+AGG | + | chr3_2:60684125-60684144 | Msa0414830:CDS | 35.0% | |
| ! | ACTAGTCTCCAAGAATCATT+TGG | + | chr3_2:60684289-60684308 | Msa0414830:CDS | 35.0% |
| CTCACAATCCAAATGATTCT+TGG | - | chr3_2:60684300-60684319 | None:intergenic | 35.0% | |
| GAGAATTTATCTCTGTTGAC+TGG | + | chr3_2:60684317-60684336 | Msa0414830:CDS | 35.0% | |
| TACACTGCGTAATAGATACA+AGG | + | chr3_2:60684379-60684398 | Msa0414830:CDS | 35.0% | |
| ACACTGCGTAATAGATACAA+GGG | + | chr3_2:60684380-60684399 | Msa0414830:CDS | 35.0% | |
| CATAGTGTCTTGGATGTATT+AGG | + | chr3_2:60684449-60684468 | Msa0414830:CDS | 35.0% | |
| !!! | TGGTTTTGATAAGGATTGGT+TGG | + | chr3_2:60684520-60684539 | Msa0414830:CDS | 35.0% |
| ! | ATTGGTTGGATAGTGTTGAA+AGG | + | chr3_2:60684534-60684553 | Msa0414830:CDS | 35.0% |
| AGACGCCATGCAAAAATTAT+TGG | + | chr3_2:60684589-60684608 | Msa0414830:CDS | 35.0% | |
| ! | GGACTCCAATAATTTTTGCA+TGG | - | chr3_2:60684597-60684616 | None:intergenic | 35.0% |
| ACATTAATGAAGGTAACCCT+TGG | + | chr3_2:60684963-60684982 | Msa0414830:three_prime_UTR | 35.0% | |
| ACCCTTGGAATTAAATCTCA+TGG | + | chr3_2:60684978-60684997 | Msa0414830:three_prime_UTR | 35.0% | |
| GCCATGAGATTTAATTCCAA+GGG | - | chr3_2:60684982-60685001 | None:intergenic | 35.0% | |
| ! | TGGAGGGAAAGCGAATTTTT+AGG | - | chr3_2:60681749-60681768 | None:intergenic | 40.0% |
| ! | ACAAAAAGGCATGTCATCAC+AGG | - | chr3_2:60682058-60682077 | None:intergenic | 40.0% |
| ! | TGTGATGACATGCCTTTTTG+TGG | + | chr3_2:60682057-60682076 | Msa0414830:CDS | 40.0% |
| ! | GTGATGACATGCCTTTTTGT+GGG | + | chr3_2:60682058-60682077 | Msa0414830:CDS | 40.0% |
| !!! | CAGCAAGTGCTTTTAGCTTT+GGG | - | chr3_2:60682297-60682316 | None:intergenic | 40.0% |
| !!! | ACAGCAAGTGCTTTTAGCTT+TGG | - | chr3_2:60682298-60682317 | None:intergenic | 40.0% |
| CTCAGGAAGCTCTTTACATA+TGG | - | chr3_2:60682359-60682378 | None:intergenic | 40.0% | |
| ATCATTAGACACTGTAGCTC+AGG | - | chr3_2:60682376-60682395 | None:intergenic | 40.0% | |
| GATAATAGAAGCAGATGAGC+TGG | + | chr3_2:60682393-60682412 | Msa0414830:CDS | 40.0% | |
| TGAAGGTCATGATGAGAAAG+TGG | + | chr3_2:60682432-60682451 | Msa0414830:CDS | 40.0% | |
| !! | TCTTCTAAAGTAGCGGTAAG+AGG | + | chr3_2:60682732-60682751 | Msa0414830:intron | 40.0% |
| CAATTACAAATGGAGACCGA+AGG | + | chr3_2:60683023-60683042 | Msa0414830:CDS | 40.0% | |
| ATTACCACTATCGTGACCTT+CGG | - | chr3_2:60683042-60683061 | None:intergenic | 40.0% | |
| ! | TGCTTTAACTTCAACCTCAG+CGG | - | chr3_2:60683093-60683112 | None:intergenic | 40.0% |
| TACGATACACAATTAGCTGC+AGG | + | chr3_2:60683606-60683625 | Msa0414830:intron | 40.0% | |
| ! | ATAGCTGGCTCATTCTTTGT+TGG | - | chr3_2:60683688-60683707 | None:intergenic | 40.0% |
| GGAGTAACTACTTGTATAGC+TGG | - | chr3_2:60683703-60683722 | None:intergenic | 40.0% | |
| ! | GACAAGAAGGTATGGCTATT+TGG | - | chr3_2:60683830-60683849 | None:intergenic | 40.0% |
| GTTATGGCAATAGGACAAGA+AGG | - | chr3_2:60683843-60683862 | None:intergenic | 40.0% | |
| AACAAATCCTCTTACCACTC+AGG | + | chr3_2:60683860-60683879 | Msa0414830:CDS | 40.0% | |
| TGATCAAGGTGAAGACTCTT+TGG | + | chr3_2:60683905-60683924 | Msa0414830:intron | 40.0% | |
| AATGAAAATGGTGAGCGATG+AGG | - | chr3_2:60683954-60683973 | None:intergenic | 40.0% | |
| TTCAACTTCCTCACCAATTG+AGG | - | chr3_2:60684048-60684067 | None:intergenic | 40.0% | |
| TTGAGGCAATGGAATGATAG+GGG | - | chr3_2:60684096-60684115 | None:intergenic | 40.0% | |
| CTTGAGGCAATGGAATGATA+GGG | - | chr3_2:60684097-60684116 | None:intergenic | 40.0% | |
| TCTTGAGGCAATGGAATGAT+AGG | - | chr3_2:60684098-60684117 | None:intergenic | 40.0% | |
| !! | GCTTTATTTGGTGCTCAAAG+TGG | + | chr3_2:60684180-60684199 | Msa0414830:intron | 40.0% |
| CCAAGACACTATGAGTTTCA+AGG | - | chr3_2:60684442-60684461 | None:intergenic | 40.0% | |
| CCTTGAAACTCATAGTGTCT+TGG | + | chr3_2:60684439-60684458 | Msa0414830:CDS | 40.0% | |
| !!! | GCGCAACTTTGGTTTTGATA+AGG | + | chr3_2:60684511-60684530 | Msa0414830:CDS | 40.0% |
| ! | GTTGGATAGTGTTGAAAGGA+GGG | + | chr3_2:60684538-60684557 | Msa0414830:CDS | 40.0% |
| !! | TTCCTTGGTAACTTGTTGCT+TGG | - | chr3_2:60684618-60684637 | None:intergenic | 40.0% |
| ATGCAACACTTCAACTTCCT+TGG | - | chr3_2:60684633-60684652 | None:intergenic | 40.0% | |
| GCATAACAAAGCAGCAATGA+TGG | - | chr3_2:60684803-60684822 | None:intergenic | 40.0% | |
| GGATGAGAAATGACGAAACT+TGG | - | chr3_2:60684875-60684894 | None:intergenic | 40.0% | |
| CGCCATGAGATTTAATTCCA+AGG | - | chr3_2:60684983-60685002 | None:intergenic | 40.0% | |
| TCGGACATTCAGATACCGTT+TGG | + | chr3_2:60682959-60682978 | Msa0414830:CDS | 45.0% | |
| TACCGTTTGGAAGCTCTGTT+TGG | + | chr3_2:60682972-60682991 | Msa0414830:CDS | 45.0% | |
| GTCCAAACAGAGCTTCCAAA+CGG | - | chr3_2:60682977-60682996 | None:intergenic | 45.0% | |
| CTCAGCGGCAAAATCTTTAG+AGG | - | chr3_2:60683078-60683097 | None:intergenic | 45.0% | |
| !! | CTCTAAAGATTTTGCCGCTG+AGG | + | chr3_2:60683076-60683095 | Msa0414830:CDS | 45.0% |
| TACTGCAGTCAAACCTTCTC+AGG | + | chr3_2:60683457-60683476 | Msa0414830:CDS | 45.0% | |
| TCCTGATGTAGTAGAACCCA+TGG | - | chr3_2:60683632-60683651 | None:intergenic | 45.0% | |
| GGCAATAGGACAAGAAGGTA+TGG | - | chr3_2:60683838-60683857 | None:intergenic | 45.0% | |
| TCAACATCCTGAGTGGTAAG+AGG | - | chr3_2:60683870-60683889 | None:intergenic | 45.0% | |
| ATAGGGGACAGCTTAGAATC+TGG | - | chr3_2:60684080-60684099 | None:intergenic | 45.0% | |
| TAGCTCAGCCAGTAAGTTGT+AGG | - | chr3_2:60684411-60684430 | None:intergenic | 45.0% | |
| CTCATGCCACTCTGAATTTG+TGG | + | chr3_2:60684472-60684491 | Msa0414830:CDS | 45.0% | |
| GTAGCTCCACAAATTCAGAG+TGG | - | chr3_2:60684481-60684500 | None:intergenic | 45.0% | |
| ! | GGTTGGATAGTGTTGAAAGG+AGG | + | chr3_2:60684537-60684556 | Msa0414830:CDS | 45.0% |
| GTCCAAGCAACAAGTTACCA+AGG | + | chr3_2:60684613-60684632 | Msa0414830:CDS | 45.0% | |
| !!! | GCGGTTTTAAGTACCCCTAT+TGG | + | chr3_2:60684746-60684765 | Msa0414830:CDS | 45.0% |
| TGACGAAACTTGGCATCCAA+GGG | - | chr3_2:60684865-60684884 | None:intergenic | 45.0% | |
| ATGACGAAACTTGGCATCCA+AGG | - | chr3_2:60684866-60684885 | None:intergenic | 45.0% | |
| GAATTCCTTGGGCATGACAG+AGG | - | chr3_2:60682501-60682520 | None:intergenic | 50.0% | |
| ! | ACACGGGTTGACTTCTCCAA+AGG | + | chr3_2:60683121-60683140 | Msa0414830:CDS | 50.0% |
| CATGGCCCGAAAGTTACTTC+TGG | - | chr3_2:60683312-60683331 | None:intergenic | 50.0% | |
| ATGGAGCAGCAACGTCTACT+TGG | + | chr3_2:60683425-60683444 | Msa0414830:CDS | 50.0% | |
| ACACAATTAGCTGCAGGCCA+TGG | + | chr3_2:60683612-60683631 | Msa0414830:intron | 50.0% | |
| CACAATTAGCTGCAGGCCAT+GGG | + | chr3_2:60683613-60683632 | Msa0414830:intron | 50.0% | |
| GCCATGGGTTCTACTACATC+AGG | + | chr3_2:60683628-60683647 | Msa0414830:CDS | 50.0% | |
| GGGATGTGCCTACAACTTAC+TGG | + | chr3_2:60684400-60684419 | Msa0414830:CDS | 50.0% | |
| CTACTAGATGCGCGCAACTT+TGG | + | chr3_2:60684500-60684519 | Msa0414830:CDS | 50.0% | |
| GAGACCGAAGGTCACGATAG+TGG | + | chr3_2:60683035-60683054 | Msa0414830:CDS | 55.0% | |
| GCTCGTCAAGAGTGAGCTTG+AGG | + | chr3_2:60684265-60684284 | Msa0414830:CDS | 55.0% | |
| CCTTGGGCATGACAGAGGCT+TGG | - | chr3_2:60682496-60682515 | None:intergenic | 60.0% | |
| CCAAGCCTCTGTCATGCCCA+AGG | + | chr3_2:60682493-60682512 | Msa0414830:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 60681680 | 60685025 | 60681680 | ID=Msa0414830;Name=Msa0414830 |
| chr3_2 | mRNA | 60681680 | 60685025 | 60681680 | ID=Msa0414830-mRNA-1;Parent=Msa0414830;Name=Msa0414830-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0.85|0.75|1|1|1|8|250|721 |
| chr3_2 | exon | 60681680 | 60682634 | 60681680 | ID=Msa0414830-mRNA-1:exon:12653;Parent=Msa0414830-mRNA-1 |
| chr3_2 | exon | 60682958 | 60683142 | 60682958 | ID=Msa0414830-mRNA-1:exon:12654;Parent=Msa0414830-mRNA-1 |
| chr3_2 | exon | 60683234 | 60683314 | 60683234 | ID=Msa0414830-mRNA-1:exon:12655;Parent=Msa0414830-mRNA-1 |
| chr3_2 | exon | 60683404 | 60683478 | 60683404 | ID=Msa0414830-mRNA-1:exon:12656;Parent=Msa0414830-mRNA-1 |
| chr3_2 | exon | 60683628 | 60683711 | 60683628 | ID=Msa0414830-mRNA-1:exon:12657;Parent=Msa0414830-mRNA-1 |
| chr3_2 | exon | 60683813 | 60683912 | 60683813 | ID=Msa0414830-mRNA-1:exon:12658;Parent=Msa0414830-mRNA-1 |
| chr3_2 | exon | 60684012 | 60684146 | 60684012 | ID=Msa0414830-mRNA-1:exon:12659;Parent=Msa0414830-mRNA-1 |
| chr3_2 | exon | 60684225 | 60685025 | 60684225 | ID=Msa0414830-mRNA-1:exon:12660;Parent=Msa0414830-mRNA-1 |
| chr3_2 | CDS | 60681680 | 60682634 | 60681680 | ID=Msa0414830-mRNA-1:cds;Parent=Msa0414830-mRNA-1 |
| chr3_2 | CDS | 60682958 | 60683142 | 60682958 | ID=Msa0414830-mRNA-1:cds;Parent=Msa0414830-mRNA-1 |
| chr3_2 | CDS | 60683234 | 60683314 | 60683234 | ID=Msa0414830-mRNA-1:cds;Parent=Msa0414830-mRNA-1 |
| chr3_2 | CDS | 60683404 | 60683478 | 60683404 | ID=Msa0414830-mRNA-1:cds;Parent=Msa0414830-mRNA-1 |
| chr3_2 | CDS | 60683628 | 60683711 | 60683628 | ID=Msa0414830-mRNA-1:cds;Parent=Msa0414830-mRNA-1 |
| chr3_2 | CDS | 60683813 | 60683912 | 60683813 | ID=Msa0414830-mRNA-1:cds;Parent=Msa0414830-mRNA-1 |
| chr3_2 | CDS | 60684012 | 60684146 | 60684012 | ID=Msa0414830-mRNA-1:cds;Parent=Msa0414830-mRNA-1 |
| chr3_2 | CDS | 60684225 | 60684775 | 60684225 | ID=Msa0414830-mRNA-1:cds;Parent=Msa0414830-mRNA-1 |
| chr3_2 | three_prime_UTR | 60684776 | 60685025 | 60684776 | ID=Msa0414830-mRNA-1:three_prime_utr;Parent=Msa0414830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
