AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0629450


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0629450 MtrunA17_Chr4g0005821 84.768 302 4 2 1 261 388 688 3.52e-180 511
Msa0629450 MtrunA17_Chr7g0241611 67.123 292 57 2 1 254 397 687 5.69e-135 396
Msa0629450 MtrunA17_Chr7g0259681 60.066 303 76 5 1 261 335 634 8.68e-118 350
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0629450 AT3G09100.2 62.021 287 71 3 1 250 383 668 1.08e-119 357
Msa0629450 AT5G01290.1 58.276 290 79 5 1 250 366 653 2.20e-109 330
Msa0629450 AT5G28210.1 45.051 293 112 8 1 249 326 613 7.69e-70 226
Msa0629450 AT3G09100.1 70.000 80 23 1 1 80 383 461 9.45e-32 122

Find 110 sgRNAs with CRISPR-Local

Find 405 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCACCAGTGAAATAATTTA+AGG 0.144290 4_3:-10315697 None:intergenic
GTTGGATTTGGCTACGTATT+TGG 0.231064 4_3:+10315798 Msa0629450:three_prime_UTR
CTCTCCTGCTTATTTGAATC+TGG 0.252109 4_3:-10313324 None:intergenic
TCTTCGATTGTGTAAGATAA+AGG 0.266576 4_3:+10309613 Msa0629450:five_prime_UTR
CTGTAGTTGTCTAGATCAAT+AGG 0.277033 4_3:+10315909 Msa0629450:three_prime_UTR
CTTCTGGTATTTGTTGGATT+TGG 0.278595 4_3:+10315786 Msa0629450:three_prime_UTR
ATTTGGATGTTGTTGTTGTT+TGG 0.278953 4_3:+10309719 Msa0629450:five_prime_UTR
GGCAGATGGTCTTATATTTC+AGG 0.279436 4_3:+10313971 Msa0629450:CDS
TAGAACCTGTTGAGAGAAAC+TGG 0.279933 4_3:-10311015 None:intergenic
AAAGTCAACTGAATTTAAAT+TGG 0.286326 4_3:-10314260 None:intergenic
GAAACTCTTGGATGGGAATA+AGG 0.299659 4_3:+10314445 Msa0629450:CDS
GTGATTCATTGTGGTTAGAT+AGG 0.301042 4_3:+10315663 Msa0629450:exon
TAACCATTGGTGTCTGCTTC+TGG 0.303633 4_3:+10315770 Msa0629450:three_prime_UTR
ATACCTTATATATGATATTA+TGG 0.303634 4_3:+10313350 Msa0629450:CDS
CTGTAAGTATTAAACTCATT+TGG 0.310885 4_3:-10315413 None:intergenic
CTGTTATCAAACACTTAGAT+TGG 0.314711 4_3:+10310148 Msa0629450:five_prime_UTR
TCTATGTATGTGATGAATAT+TGG 0.315742 4_3:+10316048 Msa0629450:three_prime_UTR
TTTGGATGTTGTTGTTGTTT+GGG 0.329131 4_3:+10309720 Msa0629450:five_prime_UTR
TCCAAATGAGGTTTCCTTGC+AGG 0.339727 4_3:+10312154 Msa0629450:CDS
CTTCGATTGTGTAAGATAAA+GGG 0.343281 4_3:+10309614 Msa0629450:five_prime_UTR
GACCCACCATTTCACATTGC+TGG 0.345896 4_3:+10313275 Msa0629450:CDS
TTCAGTTGACTTTCTGTTTG+AGG 0.348533 4_3:+10314270 Msa0629450:CDS
AAACACTTAGATTGGGTGTT+GGG 0.348829 4_3:+10310156 Msa0629450:five_prime_UTR
TTGCCATAATATCATATATA+AGG 0.351303 4_3:-10313353 None:intergenic
CACACCCAGTTTCTCTCAAC+AGG 0.355691 4_3:+10311010 Msa0629450:five_prime_UTR
AGATCAATAGGGTTAGGTTT+AGG 0.374635 4_3:+10315921 Msa0629450:three_prime_UTR
GAGTAAAATGTAGCACATAT+TGG 0.381006 4_3:+10309852 Msa0629450:five_prime_UTR
ATCTAGACAACTACAGGAAA+TGG 0.381374 4_3:-10315902 None:intergenic
GAAAGATCATCGAGTGTTCT+TGG 0.390585 4_3:+10315336 Msa0629450:CDS
TGTCTGCTTCTGGTATTTGT+TGG 0.390983 4_3:+10315780 Msa0629450:three_prime_UTR
AGTAAAATGTAGCACATATT+GGG 0.398304 4_3:+10309853 Msa0629450:five_prime_UTR
GTGATTATAAATTATTCAAA+TGG 0.401134 4_3:+10315978 Msa0629450:three_prime_UTR
TTTGAAGAAGTCGAGTGATT+TGG 0.412298 4_3:+10309702 Msa0629450:five_prime_UTR
TTTGCAAGAATATCCATTCC+AGG 0.413098 4_3:-10315370 None:intergenic
CAACCATGTTTCAGTAATAG+AGG 0.418216 4_3:+10313377 Msa0629450:CDS
TCCTGCAAGGAAACCTCATT+TGG 0.422217 4_3:-10312155 None:intergenic
TTGTCTAGATCAATAGGGTT+AGG 0.424051 4_3:+10315915 Msa0629450:three_prime_UTR
GAATCACCTTCGCTGCTTTG+CGG 0.427455 4_3:-10315647 None:intergenic
AGAGGACATACACAATTTCC+AGG 0.428565 4_3:+10310985 Msa0629450:five_prime_UTR
AATGCCTTAAATTATTTCAC+TGG 0.432603 4_3:+10315693 Msa0629450:three_prime_UTR
TGCTGTCAAGTCACAAAGAA+TGG 0.434277 4_3:-10316123 None:intergenic
TCTTACACAATCGAAGAAGT+TGG 0.438925 4_3:-10309607 None:intergenic
CACCATCCAGCAATGTGAAA+TGG 0.442513 4_3:-10313281 None:intergenic
AAAGATCATCGAGTGTTCTT+GGG 0.450552 4_3:+10315337 Msa0629450:CDS
TGTTATCAAACACTTAGATT+GGG 0.458416 4_3:+10310149 Msa0629450:five_prime_UTR
TGCTTCCATCGGCAGGTTGG+AGG 0.468482 4_3:+10314383 Msa0629450:intron
GAAAATTCTAACCAATGTAC+TGG 0.470626 4_3:-10316027 None:intergenic
ATCGGCAGGTTGGAGGTGAT+AGG 0.479533 4_3:+10314390 Msa0629450:intron
GCCTTAAATTATTTCACTGG+TGG 0.481047 4_3:+10315696 Msa0629450:three_prime_UTR
CATAAGCAACCTTTGCATGA+TGG 0.484739 4_3:-10315821 None:intergenic
TGGAAATTGTGTATGTCCTC+TGG 0.487711 4_3:-10310983 None:intergenic
GGGAATAAGGTTGCTTTCAA+AGG 0.488951 4_3:+10314458 Msa0629450:CDS
AGGTTGCTTATGTAATTAGT+TGG 0.489919 4_3:+10315832 Msa0629450:three_prime_UTR
TGTAGTTGTCTAGATCAATA+GGG 0.492453 4_3:+10315910 Msa0629450:three_prime_UTR
AGAGAAACTGGGTGTGAACC+TGG 0.494965 4_3:-10311003 None:intergenic
TGATTCATTGTGGTTAGATA+GGG 0.496184 4_3:+10315664 Msa0629450:exon
TCGTGAGTACGTGGTACATA+AGG 0.498016 4_3:-10314214 None:intergenic
ATGAAATTTGTGACGCAACT+CGG 0.504231 4_3:-10315872 None:intergenic
ATCTTTCCTGAATAAAATGA+AGG 0.508008 4_3:-10315320 None:intergenic
TGTTTGTAGTGTAGAAGATC+TGG 0.508076 4_3:+10315729 Msa0629450:three_prime_UTR
CCTTAAATTATTTCACTGGT+GGG 0.508594 4_3:+10315697 Msa0629450:three_prime_UTR
TCATCTGTGAGCTTGTCTCA+TGG 0.508881 4_3:-10310064 None:intergenic
CTCACGAAGGACTCTTAAAG+TGG 0.511501 4_3:+10314230 Msa0629450:CDS
ATGATGTTAATAACAATGGA+TGG 0.526023 4_3:+10312093 Msa0629450:CDS
CTCATGCCGCAAAGCAGCGA+AGG 0.526270 4_3:+10315641 Msa0629450:CDS
TGAGTTTAATACTTACAGAA+AGG 0.527213 4_3:+10315418 Msa0629450:CDS
GCCTTCCCATGTATGCGGAC+AGG 0.528594 4_3:+10315587 Msa0629450:CDS
CAAACACTTAGATTGGGTGT+TGG 0.529106 4_3:+10310155 Msa0629450:five_prime_UTR
CTATTGATCTAGACAACTAC+AGG 0.530585 4_3:-10315908 None:intergenic
CACATTGCTGGATGGTGAGA+TGG 0.531583 4_3:+10313287 Msa0629450:CDS
CTTGCCAGATTCAAATAAGC+AGG 0.531786 4_3:+10313320 Msa0629450:CDS
GCGGGGAAAGAAGAAACTCT+TGG 0.535079 4_3:+10314433 Msa0629450:CDS
TCGGCAGGTTGGAGGTGATA+GGG 0.537659 4_3:+10314391 Msa0629450:intron
CACCATTTCACATTGCTGGA+TGG 0.538269 4_3:+10313279 Msa0629450:CDS
AGAATCAAGTTCCAGTACAT+TGG 0.540413 4_3:+10316016 Msa0629450:three_prime_UTR
AACTCGGCAGCACTGCTGCA+AGG 0.544386 4_3:-10315856 None:intergenic
ATTGTCGAAGGGTCCAAATG+AGG 0.544433 4_3:+10312142 Msa0629450:CDS
ACATGAACATATGTAACCAT+TGG 0.547919 4_3:+10315757 Msa0629450:three_prime_UTR
GGAAAGAAGAAACTCTTGGA+TGG 0.552512 4_3:+10314437 Msa0629450:CDS
CTGCTTATTTGAATCTGGCA+AGG 0.557177 4_3:-10313319 None:intergenic
TGTAAGATAAAGGGATTGCA+AGG 0.560010 4_3:+10309623 Msa0629450:five_prime_UTR
TCCTGTCCGCATACATGGGA+AGG 0.564771 4_3:-10315588 None:intergenic
CGTATTTGGCCATCATGCAA+AGG 0.570106 4_3:+10315812 Msa0629450:three_prime_UTR
GTCAAGTCACAAAGAATGGA+AGG 0.570757 4_3:-10316119 None:intergenic
CATCCAGCAATGTGAAATGG+TGG 0.570886 4_3:-10313278 None:intergenic
AACACTTAGATTGGGTGTTG+GGG 0.573445 4_3:+10310157 Msa0629450:five_prime_UTR
TTGCAGGAGTACTACTAATG+AGG 0.583101 4_3:+10312170 Msa0629450:CDS
TTATTATTATGCAACATGGA+AGG 0.585034 4_3:+10312053 Msa0629450:five_prime_UTR
CATCATATACCGTGTACCAT+CGG 0.585178 4_3:-10312076 None:intergenic
GTATATGATGTTAATAACAA+TGG 0.587170 4_3:+10312089 Msa0629450:exon
CATGGAAGGCCGATGGTACA+CGG 0.588207 4_3:+10312067 Msa0629450:five_prime_UTR
GAAAGAAGAAACTCTTGGAT+GGG 0.603849 4_3:+10314438 Msa0629450:CDS
AAACTCTCACATGAGGCAGA+TGG 0.608691 4_3:+10313957 Msa0629450:CDS
TTTATCCTGTCCGCATACAT+GGG 0.615995 4_3:-10315592 None:intergenic
AACGTTATTATTATGCAACA+TGG 0.617616 4_3:+10312049 Msa0629450:five_prime_UTR
ATCCAGCAATGTGAAATGGT+GGG 0.633078 4_3:-10313277 None:intergenic
TGATGTTAATAACAATGGAT+GGG 0.637271 4_3:+10312094 Msa0629450:CDS
GCAGCGAAGGTGATTCATTG+TGG 0.641874 4_3:+10315654 Msa0629450:exon
AAGAGTCCTTCGTGAGTACG+TGG 0.643490 4_3:-10314223 None:intergenic
GAACCTCTATTACTGAAACA+TGG 0.658855 4_3:-10313380 None:intergenic
TCATTAGTAGTACTCCTGCA+AGG 0.662132 4_3:-10312168 None:intergenic
TATGCAACATGGAAGGCCGA+TGG 0.664710 4_3:+10312060 Msa0629450:five_prime_UTR
ATACCAGAAGCAGACACCAA+TGG 0.665509 4_3:-10315773 None:intergenic
AAAATGTAGCACATATTGGG+AGG 0.672176 4_3:+10309856 Msa0629450:five_prime_UTR
GTAAGATAAAGGGATTGCAA+GGG 0.673361 4_3:+10309624 Msa0629450:five_prime_UTR
ACCACTAGTATGCAGGCCAG+AGG 0.675372 4_3:+10310967 Msa0629450:intron
AATTCGCCTTCCCATGTATG+CGG 0.681083 4_3:+10315582 Msa0629450:CDS
AGAACCTGTTGAGAGAAACT+GGG 0.685395 4_3:-10311014 None:intergenic
TATGTACCACGTACTCACGA+AGG 0.733583 4_3:+10314217 Msa0629450:CDS
CATAAAAGACAACATCACAG+AGG 0.751598 4_3:+10315531 Msa0629450:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAATTTTTTAAAACTAGA+GGG + chr4_3:10309883-10309902 Msa0629450:intron 10.0%
!! TTTAAATTATATTACAACAA+AGG + chr4_3:10310290-10310309 Msa0629450:intron 10.0%
!! AAAAATGTAAAAATTAATTG+GGG - chr4_3:10311964-10311983 None:intergenic 10.0%
!! CAAAAAATGTAAAAATTAAT+TGG - chr4_3:10311966-10311985 None:intergenic 10.0%
!!! ATATTTTTGAAATGTTTTTT+AGG + chr4_3:10313872-10313891 Msa0629450:intron 10.0%
!!! GTTTAATTTTTTAAAACTAG+AGG + chr4_3:10309882-10309901 Msa0629450:intron 15.0%
!!! TTAATTTTTTAAAACTAGAG+GGG + chr4_3:10309884-10309903 Msa0629450:intron 15.0%
!! ATAATTTAATCATCTATCAA+TGG + chr4_3:10309919-10309938 Msa0629450:intron 15.0%
!!! ATGAATTTGAAGTTTTAATA+AGG + chr4_3:10310241-10310260 Msa0629450:intron 15.0%
!!! ATTTATCTAAAATTGGAAAA+AGG - chr4_3:10310558-10310577 None:intergenic 15.0%
!!! TTTCCAATTTTAGATAAATT+TGG + chr4_3:10310559-10310578 Msa0629450:intron 15.0%
!! TTTCAAAAGAATATACATAT+TGG - chr4_3:10310789-10310808 None:intergenic 15.0%
!! ATTAATTATACATGTAAAGT+AGG + chr4_3:10311084-10311103 Msa0629450:intron 15.0%
!! TAGATAAAACATTACAAAAA+AGG - chr4_3:10311362-10311381 None:intergenic 15.0%
!!! AAACTTTAGCTTTAAATAAT+GGG - chr4_3:10311789-10311808 None:intergenic 15.0%
!!! AAAACTTTAGCTTTAAATAA+TGG - chr4_3:10311790-10311809 None:intergenic 15.0%
!! TATATTAAATTTGGTTATGT+TGG + chr4_3:10311996-10312015 Msa0629450:intron 15.0%
!!! ATATTTGAAATTTCTAATAG+TGG + chr4_3:10312207-10312226 Msa0629450:intron 15.0%
!! TAAAGAAACAAAAATCATTA+TGG - chr4_3:10312297-10312316 None:intergenic 15.0%
!! TTTACAATATATTATGAGTA+AGG + chr4_3:10312390-10312409 Msa0629450:intron 15.0%
!!! ACTGATAATTTGTTATATTT+TGG + chr4_3:10313231-10313250 Msa0629450:intron 15.0%
!! ATACCTTATATATGATATTA+TGG + chr4_3:10313350-10313369 Msa0629450:CDS 15.0%
!! CATAATTATAAAAACAAAGT+TGG - chr4_3:10314512-10314531 None:intergenic 15.0%
!! TTCCATTTATATTGAATAAA+AGG + chr4_3:10314852-10314871 Msa0629450:intron 15.0%
!!! TACCTTTTATTCAATATAAA+TGG - chr4_3:10314857-10314876 None:intergenic 15.0%
!! ATATGATTATTTAAATGAGT+CGG - chr4_3:10314954-10314973 None:intergenic 15.0%
!! GATAAAAGAAACTAAAAATT+GGG - chr4_3:10315457-10315476 None:intergenic 15.0%
!! AGATAAAAGAAACTAAAAAT+TGG - chr4_3:10315458-10315477 None:intergenic 15.0%
!! GTGATTATAAATTATTCAAA+TGG + chr4_3:10315978-10315997 Msa0629450:three_prime_UTR 15.0%
!! ACTAATACTCATAAAAATTG+TGG + chr4_3:10309986-10310005 Msa0629450:intron 20.0%
!! CATATCAAAACATGATTTAA+TGG - chr4_3:10311051-10311070 None:intergenic 20.0%
!!! TTTCTTTTTTACACAACTAT+TGG - chr4_3:10311869-10311888 None:intergenic 20.0%
!! CAGTGAATCTATATTAAATT+TGG + chr4_3:10311987-10312006 Msa0629450:intron 20.0%
!! GTATATGATGTTAATAACAA+TGG + chr4_3:10312089-10312108 Msa0629450:exon 20.0%
!!! ACAAAAATTTTAATTGTCGA+AGG + chr4_3:10312130-10312149 Msa0629450:CDS 20.0%
!!! CAAAAATTTTAATTGTCGAA+GGG + chr4_3:10312131-10312150 Msa0629450:CDS 20.0%
!! AAAATCATTATGGATGATAA+TGG - chr4_3:10312287-10312306 None:intergenic 20.0%
!!! TTTGTTTCTTTACATTATCT+AGG + chr4_3:10312305-10312324 Msa0629450:intron 20.0%
!!! TTGTTTCTTTACATTATCTA+GGG + chr4_3:10312306-10312325 Msa0629450:intron 20.0%
!!! TGTAACAATTTTTAAAACAG+TGG - chr4_3:10312844-10312863 None:intergenic 20.0%
!!! TTTGTTATATTTTGGTTCTA+AGG + chr4_3:10313239-10313258 Msa0629450:intron 20.0%
!!! TTGTTATATTTTGGTTCTAA+GGG + chr4_3:10313240-10313259 Msa0629450:intron 20.0%
!! TTGCCATAATATCATATATA+AGG - chr4_3:10313356-10313375 None:intergenic 20.0%
!!! TTTGAAATGTTTTTTAGGTA+AGG + chr4_3:10313877-10313896 Msa0629450:intron 20.0%
!! AAAGTCAACTGAATTTAAAT+TGG - chr4_3:10314263-10314282 None:intergenic 20.0%
!! AATTAAACAAGCCAAAATTA+AGG + chr4_3:10314718-10314737 Msa0629450:intron 20.0%
!! ATTAAACAAGCCAAAATTAA+GGG + chr4_3:10314719-10314738 Msa0629450:intron 20.0%
!! AATTAAACAAGCCAAAATTA+AGG + chr4_3:10314718-10314737 Msa0629450:intron 20.0%
!! ATTAAACAAGCCAAAATTAA+GGG + chr4_3:10314719-10314738 Msa0629450:intron 20.0%
!!! AATAAAAGGTATAATTCTCT+AGG + chr4_3:10314866-10314885 Msa0629450:intron 20.0%
!! TATGATTATTTAAATGAGTC+GGG - chr4_3:10314953-10314972 None:intergenic 20.0%
!! TGATTAAATAATTCGTGAAT+AGG + chr4_3:10315038-10315057 Msa0629450:intron 20.0%
!!! AGCCATTTACTTAATTTTAT+AGG + chr4_3:10315498-10315517 Msa0629450:intron 20.0%
!! CACCTATAAAATTAAGTAAA+TGG - chr4_3:10315503-10315522 None:intergenic 20.0%
!! AATTTTCTTGCCTTGATTTT+TGG - chr4_3:10309804-10309823 None:intergenic 25.0%
!! TTTTAATATGAAACTCGCTT+TGG - chr4_3:10309830-10309849 None:intergenic 25.0%
! AGTAAAATGTAGCACATATT+GGG + chr4_3:10309853-10309872 Msa0629450:five_prime_UTR 25.0%
! ATTTAATCATCTATCAATGG+AGG + chr4_3:10309922-10309941 Msa0629450:intron 25.0%
! TGTTATCAAACACTTAGATT+GGG + chr4_3:10310149-10310168 Msa0629450:five_prime_UTR 25.0%
!!! TCTGTTAGTATCTTTGATTT+TGG + chr4_3:10310443-10310462 Msa0629450:intron 25.0%
!! CAGCCAAATTTATCTAAAAT+TGG - chr4_3:10310565-10310584 None:intergenic 25.0%
!!! TTTTTTCATGTTGAGTTGTA+AGG + chr4_3:10310616-10310635 Msa0629450:intron 25.0%
! GGTAAATCATAAAAATGAGA+GGG - chr4_3:10310907-10310926 None:intergenic 25.0%
! AGGTAAATCATAAAAATGAG+AGG - chr4_3:10310908-10310927 None:intergenic 25.0%
! TGTTAGCATAGTTAGTATTA+TGG + chr4_3:10311172-10311191 Msa0629450:intron 25.0%
! ATATATCGGGTTACAATTTA+AGG - chr4_3:10311459-10311478 None:intergenic 25.0%
! TTGAACAAGAAGAGATATAT+CGG - chr4_3:10311473-10311492 None:intergenic 25.0%
! AATAATATGTCATTACAGAG+AGG - chr4_3:10311575-10311594 None:intergenic 25.0%
! CTGTAATGACATATTATTCA+AGG + chr4_3:10311577-10311596 Msa0629450:intron 25.0%
! AATCTAATCATTCGAAGATA+TGG - chr4_3:10311680-10311699 None:intergenic 25.0%
! AACGTTATTATTATGCAACA+TGG + chr4_3:10312049-10312068 Msa0629450:five_prime_UTR 25.0%
! TTATTATTATGCAACATGGA+AGG + chr4_3:10312053-10312072 Msa0629450:five_prime_UTR 25.0%
! ATGATGTTAATAACAATGGA+TGG + chr4_3:10312093-10312112 Msa0629450:CDS 25.0%
! TGATGTTAATAACAATGGAT+GGG + chr4_3:10312094-10312113 Msa0629450:CDS 25.0%
!! ACAATGTTGAAACAGTATTT+TGG - chr4_3:10312421-10312440 None:intergenic 25.0%
!!! AGATCTTGAAATTTTAAGGT+TGG - chr4_3:10312564-10312583 None:intergenic 25.0%
! AACCTTAAAATTTCAAGATC+TGG + chr4_3:10312563-10312582 Msa0629450:intron 25.0%
! TATAGCCTCATAATTTCTAA+GGG - chr4_3:10312704-10312723 None:intergenic 25.0%
!!! AACAATTTTTAAAACAGTGG+TGG - chr4_3:10312841-10312860 None:intergenic 25.0%
!!! AGATAAAGCTTTTATCGATT+AGG - chr4_3:10312906-10312925 None:intergenic 25.0%
!!! ACAAATATAGCCACTTTTAA+GGG - chr4_3:10312955-10312974 None:intergenic 25.0%
!!! TACAAATATAGCCACTTTTA+AGG - chr4_3:10312956-10312975 None:intergenic 25.0%
! AGAAAATAAATTGTCTCTCT+AGG - chr4_3:10313180-10313199 None:intergenic 25.0%
! TTATTGTGCAAAATAATGCT+GGG + chr4_3:10313413-10313432 Msa0629450:intron 25.0%
!! TGTGTATGATTATTGGTTAA+TGG + chr4_3:10313638-10313657 Msa0629450:intron 25.0%
! AACAAATGTTAACAAGGATT+TGG - chr4_3:10314126-10314145 None:intergenic 25.0%
! GAAAAGAACAAATGTTAACA+AGG - chr4_3:10314132-10314151 None:intergenic 25.0%
! TTGGAATTTCTGATATTACA+TGG + chr4_3:10314321-10314340 Msa0629450:intron 25.0%
! AATTGCTTGAATTTATAACC+TGG + chr4_3:10314596-10314615 Msa0629450:intron 25.0%
! AATTGCTTGAATTTATAACC+TGG + chr4_3:10314596-10314615 Msa0629450:intron 25.0%
! ATAAAACAAACTATGAACTG+TGG - chr4_3:10315241-10315260 None:intergenic 25.0%
! ATCTTTCCTGAATAAAATGA+AGG - chr4_3:10315323-10315342 None:intergenic 25.0%
! CTGTAAGTATTAAACTCATT+TGG - chr4_3:10315416-10315435 None:intergenic 25.0%
! TGAGTTTAATACTTACAGAA+AGG + chr4_3:10315418-10315437 Msa0629450:CDS 25.0%
! TAAAAATTGGGAGTTAGTAT+TGG - chr4_3:10315445-10315464 None:intergenic 25.0%
! TTTATCTCTAAATCTGTACT+TGG + chr4_3:10315471-10315490 Msa0629450:intron 25.0%
! AATGCCTTAAATTATTTCAC+TGG + chr4_3:10315693-10315712 Msa0629450:three_prime_UTR 25.0%
! TCTATGTATGTGATGAATAT+TGG + chr4_3:10316048-10316067 Msa0629450:three_prime_UTR 25.0%
TCTTCGATTGTGTAAGATAA+AGG + chr4_3:10309613-10309632 Msa0629450:five_prime_UTR 30.0%
CTTCGATTGTGTAAGATAAA+GGG + chr4_3:10309614-10309633 Msa0629450:five_prime_UTR 30.0%
! ATTTGGATGTTGTTGTTGTT+TGG + chr4_3:10309719-10309738 Msa0629450:five_prime_UTR 30.0%
!! TTTGGATGTTGTTGTTGTTT+GGG + chr4_3:10309720-10309739 Msa0629450:five_prime_UTR 30.0%
!!! TTGTTTGGGTTTTTTTCTTC+TGG + chr4_3:10309734-10309753 Msa0629450:five_prime_UTR 30.0%
GAGTAAAATGTAGCACATAT+TGG + chr4_3:10309852-10309871 Msa0629450:five_prime_UTR 30.0%
CTGTTATCAAACACTTAGAT+TGG + chr4_3:10310148-10310167 Msa0629450:five_prime_UTR 30.0%
TATTACAACAAAGGAGTTGA+TGG + chr4_3:10310299-10310318 Msa0629450:intron 30.0%
AATGTGACAAACAAAAGGAT+CGG - chr4_3:10310359-10310378 None:intergenic 30.0%
AGTGTAATGTGACAAACAAA+AGG - chr4_3:10310364-10310383 None:intergenic 30.0%
!! GTTAGTATCTTTGATTTTGG+AGG + chr4_3:10310446-10310465 Msa0629450:intron 30.0%
AGTGATAAAACCAAGTAATC+AGG - chr4_3:10310512-10310531 None:intergenic 30.0%
! GCACATTTTACTATGTGATT+TGG + chr4_3:10310653-10310672 Msa0629450:intron 30.0%
! TTTTTATGAGTGAACTAAGC+AGG + chr4_3:10310827-10310846 Msa0629450:intron 30.0%
AAAAATGAGAGGGAAATGAA+AGG - chr4_3:10310897-10310916 None:intergenic 30.0%
TAGCATAGTTAGTATTATGG+TGG + chr4_3:10311175-10311194 Msa0629450:intron 30.0%
AGCATAGTTAGTATTATGGT+GGG + chr4_3:10311176-10311195 Msa0629450:intron 30.0%
AATAACACAATGGAAAGATC+AGG - chr4_3:10311264-10311283 None:intergenic 30.0%
ATGGTGTAACAATAACACAA+TGG - chr4_3:10311274-10311293 None:intergenic 30.0%
TTATTGTTACACCATGACTT+TGG + chr4_3:10311279-10311298 Msa0629450:intron 30.0%
TTGTGCATTGTATTTCGTAT+TGG + chr4_3:10311306-10311325 Msa0629450:intron 30.0%
TGTGCATTGTATTTCGTATT+GGG + chr4_3:10311307-10311326 Msa0629450:intron 30.0%
! CTATAGATTCTCAGTTTTAC+CGG + chr4_3:10311412-10311431 Msa0629450:intron 30.0%
!! TAATTGTGAAAAGTATCCTC+CGG - chr4_3:10311434-10311453 None:intergenic 30.0%
TGAACAAGAAGAGATATATC+GGG - chr4_3:10311472-10311491 None:intergenic 30.0%
CTTCTTGTTCAAAGATTTCA+TGG + chr4_3:10311481-10311500 Msa0629450:intron 30.0%
GTTATATGCACTACTAGATA+AGG - chr4_3:10311525-10311544 None:intergenic 30.0%
TCTAGTAGTGCATATAACAA+AGG + chr4_3:10311527-10311546 Msa0629450:intron 30.0%
CTAGTAGTGCATATAACAAA+GGG + chr4_3:10311528-10311547 Msa0629450:intron 30.0%
TTGCAACTACAAAGAATGTA+AGG - chr4_3:10311637-10311656 None:intergenic 30.0%
CAAGTAAATTTCCAACAGAA+GGG - chr4_3:10311916-10311935 None:intergenic 30.0%
ACAAGTAAATTTCCAACAGA+AGG - chr4_3:10311917-10311936 None:intergenic 30.0%
!!! CTGTTTCAACATTGTTTTAG+TGG + chr4_3:10312426-10312445 Msa0629450:intron 30.0%
GATAGAGATTCCAATTACTT+GGG - chr4_3:10312597-10312616 None:intergenic 30.0%
!! TAAAGTTCTCTAGCTTCTTT+TGG + chr4_3:10312655-10312674 Msa0629450:intron 30.0%
! TAATTTCTAAGGGAATAGGT+TGG - chr4_3:10312694-10312713 None:intergenic 30.0%
! CTCATAATTTCTAAGGGAAT+AGG - chr4_3:10312698-10312717 None:intergenic 30.0%
CTATTCCCTTAGAAATTATG+AGG + chr4_3:10312696-10312715 Msa0629450:intron 30.0%
CTATAGCCTCATAATTTCTA+AGG - chr4_3:10312705-10312724 None:intergenic 30.0%
ACTAAAGAACATGCAATAGT+TGG + chr4_3:10312730-10312749 Msa0629450:intron 30.0%
!!! ATTTTTAAAACAGTGGTGGT+TGG - chr4_3:10312837-10312856 None:intergenic 30.0%
TATAAGACCACTATTCTAGT+GGG - chr4_3:10313004-10313023 None:intergenic 30.0%
ATATAAGACCACTATTCTAG+TGG - chr4_3:10313005-10313024 None:intergenic 30.0%
ATGAGTGATGTAAATTAGCT+TGG + chr4_3:10313069-10313088 Msa0629450:intron 30.0%
! TGAGTGATGTAAATTAGCTT+GGG + chr4_3:10313070-10313089 Msa0629450:intron 30.0%
! ATGTAAATTAGCTTGGGATA+AGG + chr4_3:10313076-10313095 Msa0629450:intron 30.0%
!!! ATATTTTGGTTCTAAGGGTT+TGG + chr4_3:10313245-10313264 Msa0629450:intron 30.0%
!!! TATTTTGGTTCTAAGGGTTT+GGG + chr4_3:10313246-10313265 Msa0629450:intron 30.0%
ATGTTTCAGTAATAGAGGTT+CGG + chr4_3:10313382-10313401 Msa0629450:intron 30.0%
GTTATTGTGCAAAATAATGC+TGG + chr4_3:10313412-10313431 Msa0629450:intron 30.0%
! TTGGTTAATGGCTCAAATTT+TGG + chr4_3:10313650-10313669 Msa0629450:intron 30.0%
ATCTTCCATCTTTCATAGAA+GGG - chr4_3:10313684-10313703 None:intergenic 30.0%
AGTATGTTGTGATCAATGTA+AGG - chr4_3:10313818-10313837 None:intergenic 30.0%
TAAGCCATAAGAGAAAAATG+AGG - chr4_3:10313846-10313865 None:intergenic 30.0%
!!! GAAATGTTTTTTAGGTAAGG+AGG + chr4_3:10313880-10313899 Msa0629450:intron 30.0%
CATTAAAAAACTCTCACATG+AGG + chr4_3:10313950-10313969 Msa0629450:CDS 30.0%
AGAATGAGAATAAATCTGTG+TGG + chr4_3:10314041-10314060 Msa0629450:intron 30.0%
AACAAGGATTTGGAAGTAAA+AGG - chr4_3:10314116-10314135 None:intergenic 30.0%
! TTGTTCTTTTCCTTCTGTTT+TGG + chr4_3:10314141-10314160 Msa0629450:intron 30.0%
TTCATTGAATCCAAAACAGA+AGG - chr4_3:10314154-10314173 None:intergenic 30.0%
TCCTGATTATATTACTTACC+AGG + chr4_3:10314180-10314199 Msa0629450:intron 30.0%
CCTGATTATATTACTTACCA+GGG + chr4_3:10314181-10314200 Msa0629450:intron 30.0%
ATTATATTACTTACCAGGGT+TGG + chr4_3:10314185-10314204 Msa0629450:intron 30.0%
TTATATTACTTACCAGGGTT+GGG + chr4_3:10314186-10314205 Msa0629450:intron 30.0%
! TATCATCACCTTCTTTTGTA+TGG + chr4_3:10314294-10314313 Msa0629450:intron 30.0%
!!! TAATTTTTAGCTGCTTCCAT+CGG + chr4_3:10314372-10314391 Msa0629450:intron 30.0%
TTATGTTGTGTCTGTAGAAT+AGG + chr4_3:10314527-10314546 Msa0629450:intron 30.0%
ATAGGAAATTTAGACAGTCA+TGG + chr4_3:10314545-10314564 Msa0629450:intron 30.0%
GACTTTAATAACTGAGACAT+GGG - chr4_3:10314918-10314937 None:intergenic 30.0%
TGACTTTAATAACTGAGACA+TGG - chr4_3:10314919-10314938 None:intergenic 30.0%
TGATTCATTGTGGTTAGATA+GGG + chr4_3:10315664-10315683 Msa0629450:exon 30.0%
CCTTAAATTATTTCACTGGT+GGG + chr4_3:10315697-10315716 Msa0629450:three_prime_UTR 30.0%
ACATGAACATATGTAACCAT+TGG + chr4_3:10315757-10315776 Msa0629450:three_prime_UTR 30.0%
AGGTTGCTTATGTAATTAGT+TGG + chr4_3:10315832-10315851 Msa0629450:three_prime_UTR 30.0%
TGTAGTTGTCTAGATCAATA+GGG + chr4_3:10315910-10315929 Msa0629450:three_prime_UTR 30.0%
GAAAATTCTAACCAATGTAC+TGG - chr4_3:10316030-10316049 None:intergenic 30.0%
TCTTACACAATCGAAGAAGT+TGG - chr4_3:10309610-10309629 None:intergenic 35.0%
TGTAAGATAAAGGGATTGCA+AGG + chr4_3:10309623-10309642 Msa0629450:five_prime_UTR 35.0%
GTAAGATAAAGGGATTGCAA+GGG + chr4_3:10309624-10309643 Msa0629450:five_prime_UTR 35.0%
TTTGAAGAAGTCGAGTGATT+TGG + chr4_3:10309702-10309721 Msa0629450:five_prime_UTR 35.0%
AAAATGTAGCACATATTGGG+AGG + chr4_3:10309856-10309875 Msa0629450:five_prime_UTR 35.0%
CATTTGTCTCAAACTACACA+AGG - chr4_3:10309959-10309978 None:intergenic 35.0%
! CTTGTGTAGTTTGAGACAAA+TGG + chr4_3:10309957-10309976 Msa0629450:intron 35.0%
! CAAGTTTAAAACATGTCAGG+TGG - chr4_3:10310018-10310037 None:intergenic 35.0%
!! CACCTGACATGTTTTAAACT+TGG + chr4_3:10310016-10310035 Msa0629450:intron 35.0%
! TGCCAAGTTTAAAACATGTC+AGG - chr4_3:10310021-10310040 None:intergenic 35.0%
! ATGACGAACGATGATGTTTT+AGG + chr4_3:10310083-10310102 Msa0629450:five_prime_UTR 35.0%
! TCGAAATGCATTTTGCTGAT+CGG - chr4_3:10310123-10310142 None:intergenic 35.0%
AAACACTTAGATTGGGTGTT+GGG + chr4_3:10310156-10310175 Msa0629450:five_prime_UTR 35.0%
AGCCTTCTTACTTTCATGTA+TGG + chr4_3:10310182-10310201 Msa0629450:intron 35.0%
GCCTTCTTACTTTCATGTAT+GGG + chr4_3:10310183-10310202 Msa0629450:intron 35.0%
ACCCATACATGAAAGTAAGA+AGG - chr4_3:10310187-10310206 None:intergenic 35.0%
! GTTTTGCTCTTCGTACTATT+TGG + chr4_3:10310468-10310487 Msa0629450:intron 35.0%
GTACTCATTTCCTGATTACT+TGG + chr4_3:10310499-10310518 Msa0629450:intron 35.0%
!! CTATGTGATTTGGTGATTTG+TGG + chr4_3:10310663-10310682 Msa0629450:intron 35.0%
! TGATTTGTGGAAAATGTGCT+TGG + chr4_3:10310676-10310695 Msa0629450:intron 35.0%
!! TGTGTGTGTGTGTTTTTGAA+TGG + chr4_3:10311145-10311164 Msa0629450:intron 35.0%
GCATAGTTAGTATTATGGTG+GGG + chr4_3:10311177-10311196 Msa0629450:intron 35.0%
TTGAGTGGTAAAGATTGAGA+GGG - chr4_3:10311207-10311226 None:intergenic 35.0%
! GTTTTATCTACAACAATGCC+TGG + chr4_3:10311372-10311391 Msa0629450:intron 35.0%
CGGTAAAACTGAGAATCTAT+AGG - chr4_3:10311414-10311433 None:intergenic 35.0%
CACTACTAGATAAGGTTTAG+AGG - chr4_3:10311517-10311536 None:intergenic 35.0%
TAGTGCATATAACAAAGGGA+AGG + chr4_3:10311532-10311551 Msa0629450:intron 35.0%
AGTGCATATAACAAAGGGAA+GGG + chr4_3:10311533-10311552 Msa0629450:intron 35.0%
GAAGATATGGCTTAGTGAAA+TGG - chr4_3:10311667-10311686 None:intergenic 35.0%
!! GTAAAATGACCACTGATTCT+AGG - chr4_3:10311714-10311733 None:intergenic 35.0%
CGTGAAGATAGTGTTGTAAA+AGG - chr4_3:10311826-10311845 None:intergenic 35.0%
TTATGTATTTGCCCTTCTGT+TGG + chr4_3:10311902-10311921 Msa0629450:intron 35.0%
ATTTGGTTATGTTGGTATGC+AGG + chr4_3:10312004-10312023 Msa0629450:intron 35.0%
TTTGGTTATGTTGGTATGCA+GGG + chr4_3:10312005-10312024 Msa0629450:intron 35.0%
CTAATAGTGGTTGTTACTCT+TGG + chr4_3:10312220-10312239 Msa0629450:intron 35.0%
CTTTACATTATCTAGGGATC+TGG + chr4_3:10312312-10312331 Msa0629450:intron 35.0%
! GGCCAGATCTTGAAATTTTA+AGG - chr4_3:10312568-10312587 None:intergenic 35.0%
TTCCAATTACTTGGGTGATT+TGG - chr4_3:10312589-10312608 None:intergenic 35.0%
GGATAGAGATTCCAATTACT+TGG - chr4_3:10312598-10312617 None:intergenic 35.0%
AACAGAATCATGCTTTCATG+AGG - chr4_3:10312630-10312649 None:intergenic 35.0%
!! TTCTCTAGCTTCTTTTGGAT+CGG + chr4_3:10312660-10312679 Msa0629450:intron 35.0%
GAACATGCAATAGTTGGTTA+AGG + chr4_3:10312736-10312755 Msa0629450:intron 35.0%
ATGCAATAGTTGGTTAAGGA+CGG + chr4_3:10312740-10312759 Msa0629450:intron 35.0%
ATTAGGATGACTTCTGTATG+AGG - chr4_3:10312889-10312908 None:intergenic 35.0%
TTGTCGTATTCCCTTAAAAG+TGG + chr4_3:10312942-10312961 Msa0629450:intron 35.0%
ACATATTCCCACTAGAATAG+TGG + chr4_3:10312994-10313013 Msa0629450:intron 35.0%
CAACCATGTTTCAGTAATAG+AGG + chr4_3:10313377-10313396 Msa0629450:CDS 35.0%
GAACCTCTATTACTGAAACA+TGG - chr4_3:10313383-10313402 None:intergenic 35.0%
TTCATGCCTTTCTTGATTCT+TGG + chr4_3:10313611-10313630 Msa0629450:intron 35.0%
TGGTAGCTGTGTATGATTAT+TGG + chr4_3:10313631-10313650 Msa0629450:intron 35.0%
CATCTTCCATCTTTCATAGA+AGG - chr4_3:10313685-10313704 None:intergenic 35.0%
AGAAAGAAGTGATTGAACCT+AGG + chr4_3:10313709-10313728 Msa0629450:intron 35.0%
TCCTTACTACAGATATGATC+TGG + chr4_3:10313767-10313786 Msa0629450:intron 35.0%
TCCAGATCATATCTGTAGTA+AGG - chr4_3:10313771-10313790 None:intergenic 35.0%
! ATATGATCTGGAACCATTCA+GGG + chr4_3:10313779-10313798 Msa0629450:intron 35.0%
!! GAAGCCTCATTTTTCTCTTA+TGG + chr4_3:10313839-10313858 Msa0629450:intron 35.0%
! AGGTAAGGAGGAAAGATTTT+TGG + chr4_3:10313892-10313911 Msa0629450:intron 35.0%
! TACTGTCACAAAGCTTTTGA+AGG + chr4_3:10313923-10313942 Msa0629450:CDS 35.0%
! TATTTCAGGTGAGTTGTGAA+TGG + chr4_3:10313985-10314004 Msa0629450:intron 35.0%
TCTAGTGTCTAGTACAATGA+AGG - chr4_3:10314024-10314043 None:intergenic 35.0%
GGATTTGGAAGTAAAAGGAA+TGG - chr4_3:10314111-10314130 None:intergenic 35.0%
CCCTGGTAAGTAATATAATC+AGG - chr4_3:10314184-10314203 None:intergenic 35.0%
! TTCAGTTGACTTTCTGTTTG+AGG + chr4_3:10314270-10314289 Msa0629450:CDS 35.0%
CCAAAACACCATACAAAAGA+AGG - chr4_3:10314305-10314324 None:intergenic 35.0%
! CCTTCTTTTGTATGGTGTTT+TGG + chr4_3:10314302-10314321 Msa0629450:intron 35.0%
AGCAGCTAAAAATTAGATGG+CGG - chr4_3:10314367-10314386 None:intergenic 35.0%
GGAAGCAGCTAAAAATTAGA+TGG - chr4_3:10314370-10314389 None:intergenic 35.0%
!!! AGCTACTTTTTGTGTATGAG+CGG + chr4_3:10314414-10314433 Msa0629450:CDS 35.0%
GAAAGAAGAAACTCTTGGAT+GGG + chr4_3:10314438-10314457 Msa0629450:CDS 35.0%
ATTTAGACAGTCATGGCATT+TGG + chr4_3:10314552-10314571 Msa0629450:intron 35.0%
TTTAGACAGTCATGGCATTT+GGG + chr4_3:10314553-10314572 Msa0629450:intron 35.0%
!! GCATGGCTTTAGTTTACTTA+TGG + chr4_3:10314817-10314836 Msa0629450:intron 35.0%
!! ATACTTCTCAACCCACTTTT+TGG - chr4_3:10315140-10315159 None:intergenic 35.0%
CACTTGCTTTAATTGCTTTC+TGG + chr4_3:10315269-10315288 Msa0629450:intron 35.0%
GGTAACATTAAATCTGCAGA+TGG + chr4_3:10315290-10315309 Msa0629450:intron 35.0%
! ACAGAGCCTTCATTTTATTC+AGG + chr4_3:10315314-10315333 Msa0629450:CDS 35.0%
AAAGATCATCGAGTGTTCTT+GGG + chr4_3:10315337-10315356 Msa0629450:CDS 35.0%
!! TTCTTGGGATTTTGATAACC+TGG + chr4_3:10315352-10315371 Msa0629450:CDS 35.0%
TTTGCAAGAATATCCATTCC+AGG - chr4_3:10315373-10315392 None:intergenic 35.0%
CATAAAAGACAACATCACAG+AGG + chr4_3:10315531-10315550 Msa0629450:CDS 35.0%
GTGATTCATTGTGGTTAGAT+AGG + chr4_3:10315663-10315682 Msa0629450:exon 35.0%
GCCTTAAATTATTTCACTGG+TGG + chr4_3:10315696-10315715 Msa0629450:three_prime_UTR 35.0%
CCCACCAGTGAAATAATTTA+AGG - chr4_3:10315700-10315719 None:intergenic 35.0%
TGTTTGTAGTGTAGAAGATC+TGG + chr4_3:10315729-10315748 Msa0629450:three_prime_UTR 35.0%
! CTTCTGGTATTTGTTGGATT+TGG + chr4_3:10315786-10315805 Msa0629450:three_prime_UTR 35.0%
ATGAAATTTGTGACGCAACT+CGG - chr4_3:10315875-10315894 None:intergenic 35.0%
ATCTAGACAACTACAGGAAA+TGG - chr4_3:10315905-10315924 None:intergenic 35.0%
CTATTGATCTAGACAACTAC+AGG - chr4_3:10315911-10315930 None:intergenic 35.0%
CTGTAGTTGTCTAGATCAAT+AGG + chr4_3:10315909-10315928 Msa0629450:three_prime_UTR 35.0%
TTGTCTAGATCAATAGGGTT+AGG + chr4_3:10315915-10315934 Msa0629450:three_prime_UTR 35.0%
AGATCAATAGGGTTAGGTTT+AGG + chr4_3:10315921-10315940 Msa0629450:three_prime_UTR 35.0%
AGAATCAAGTTCCAGTACAT+TGG + chr4_3:10316016-10316035 Msa0629450:three_prime_UTR 35.0%
GCAGATGATGCCAAAAATCA+AGG + chr4_3:10309791-10309810 Msa0629450:five_prime_UTR 40.0%
! TTTAAAACTAGAGGGGAGTG+CGG + chr4_3:10309891-10309910 Msa0629450:intron 40.0%
! GGCATTTTTCCCATTCTCTT+AGG + chr4_3:10310037-10310056 Msa0629450:intron 40.0%
CATGGTTCTCCTAAGAGAAT+GGG - chr4_3:10310049-10310068 None:intergenic 40.0%
TCATGGTTCTCCTAAGAGAA+TGG - chr4_3:10310050-10310069 None:intergenic 40.0%
CAAACACTTAGATTGGGTGT+TGG + chr4_3:10310155-10310174 Msa0629450:five_prime_UTR 40.0%
! AACACTTAGATTGGGTGTTG+GGG + chr4_3:10310157-10310176 Msa0629450:five_prime_UTR 40.0%
TTGTAAGGTCACGAAGTATG+TGG + chr4_3:10310631-10310650 Msa0629450:intron 40.0%
AATATTGTCTTAGCTGCACG+TGG + chr4_3:10310739-10310758 Msa0629450:intron 40.0%
! GCATCAGAAGTACATAAAGC+AGG - chr4_3:10310928-10310947 None:intergenic 40.0%
CATACTAGTGGTTAGTGAAC+TGG - chr4_3:10310959-10310978 None:intergenic 40.0%
TTCACTAACCACTAGTATGC+AGG + chr4_3:10310960-10310979 Msa0629450:intron 40.0%
TGGAAATTGTGTATGTCCTC+TGG - chr4_3:10310986-10311005 None:intergenic 40.0%
AGAGGACATACACAATTTCC+AGG + chr4_3:10310985-10311004 Msa0629450:five_prime_UTR 40.0%
AGAACCTGTTGAGAGAAACT+GGG - chr4_3:10311017-10311036 None:intergenic 40.0%
TAGAACCTGTTGAGAGAAAC+TGG - chr4_3:10311018-10311037 None:intergenic 40.0%
GTTGAGTGGTAAAGATTGAG+AGG - chr4_3:10311208-10311227 None:intergenic 40.0%
TGCACAATTGTCCAAAGTCA+TGG - chr4_3:10311293-10311312 None:intergenic 40.0%
! TAGATTCTCAGTTTTACCGG+AGG + chr4_3:10311415-10311434 Msa0629450:intron 40.0%
CATCATATACCGTGTACCAT+CGG - chr4_3:10312079-10312098 None:intergenic 40.0%
TCATTAGTAGTACTCCTGCA+AGG - chr4_3:10312171-10312190 None:intergenic 40.0%
!! TTGCAGGAGTACTACTAATG+AGG + chr4_3:10312170-10312189 Msa0629450:CDS 40.0%
TACATTATCTAGGGATCTGG+TGG + chr4_3:10312315-10312334 Msa0629450:intron 40.0%
AGAAAGGAAAATGCCAGACT+TGG - chr4_3:10312473-10312492 None:intergenic 40.0%
! GAGTAGAGGCATAATGAGAA+AGG - chr4_3:10312489-10312508 None:intergenic 40.0%
AAACCATGCAAAATGTAGCG+AGG - chr4_3:10312520-10312539 None:intergenic 40.0%
!! TCTCTAGCTTCTTTTGGATC+GGG + chr4_3:10312661-10312680 Msa0629450:intron 40.0%
! TTGGTTGATGTACACCATAG+AGG - chr4_3:10312818-10312837 None:intergenic 40.0%
ATCCAGCAATGTGAAATGGT+GGG - chr4_3:10313280-10313299 None:intergenic 40.0%
CTGCTTATTTGAATCTGGCA+AGG - chr4_3:10313322-10313341 None:intergenic 40.0%
CTTGCCAGATTCAAATAAGC+AGG + chr4_3:10313320-10313339 Msa0629450:CDS 40.0%
CTCTCCTGCTTATTTGAATC+TGG - chr4_3:10313327-10313346 None:intergenic 40.0%
CAGCTACCAAGAATCAAGAA+AGG - chr4_3:10313620-10313639 None:intergenic 40.0%
AGCAACCCTTCTATGAAAGA+TGG + chr4_3:10313676-10313695 Msa0629450:intron 40.0%
TGTAGTAAGGATTTCTGCTC+TGG - chr4_3:10313758-10313777 None:intergenic 40.0%
! GATATGATCTGGAACCATTC+AGG + chr4_3:10313778-10313797 Msa0629450:intron 40.0%
!! GGCAGATGGTCTTATATTTC+AGG + chr4_3:10313971-10313990 Msa0629450:CDS 40.0%
ACCAGTCTCTCATCAAGAAT+CGG - chr4_3:10314067-10314086 None:intergenic 40.0%
!! TGAGAGACTGGTTCAAGTTT+TGG + chr4_3:10314075-10314094 Msa0629450:intron 40.0%
!!! AGACTGGTTCAAGTTTTGGA+AGG + chr4_3:10314079-10314098 Msa0629450:intron 40.0%
!!! GGTTCAAGTTTTGGAAGGAT+TGG + chr4_3:10314084-10314103 Msa0629450:intron 40.0%
!!! GCTACTTTTTGTGTATGAGC+GGG + chr4_3:10314415-10314434 Msa0629450:CDS 40.0%
!!! CTACTTTTTGTGTATGAGCG+GGG + chr4_3:10314416-10314435 Msa0629450:CDS 40.0%
GGAAAGAAGAAACTCTTGGA+TGG + chr4_3:10314437-10314456 Msa0629450:CDS 40.0%
GAAACTCTTGGATGGGAATA+AGG + chr4_3:10314445-10314464 Msa0629450:CDS 40.0%
! GGGAATAAGGTTGCTTTCAA+AGG + chr4_3:10314458-10314477 Msa0629450:CDS 40.0%
!! GAACATCATTTTTGCAAGCC+AGG - chr4_3:10314683-10314702 None:intergenic 40.0%
! CAAGCGCAAACCCTTAATTT+TGG - chr4_3:10314732-10314751 None:intergenic 40.0%
! CAAGCGCAAACCCTTAATTT+TGG - chr4_3:10314732-10314751 None:intergenic 40.0%
CAAAATTAAGGGTTTGCGCT+TGG + chr4_3:10314730-10314749 Msa0629450:intron 40.0%
TTTAGTGCCCACCAAAAAGT+GGG + chr4_3:10315126-10315145 Msa0629450:intron 40.0%
!!! TTCTCAACCCACTTTTTGGT+GGG - chr4_3:10315136-10315155 None:intergenic 40.0%
GAAAGATCATCGAGTGTTCT+TGG + chr4_3:10315336-10315355 Msa0629450:CDS 40.0%
!! GGGATTTTGATAACCTGGAA+TGG + chr4_3:10315357-10315376 Msa0629450:CDS 40.0%
TTTATCCTGTCCGCATACAT+GGG - chr4_3:10315595-10315614 None:intergenic 40.0%
! TTTTATCCTGTCCGCATACA+TGG - chr4_3:10315596-10315615 None:intergenic 40.0%
TGTCTGCTTCTGGTATTTGT+TGG + chr4_3:10315780-10315799 Msa0629450:three_prime_UTR 40.0%
GTTGGATTTGGCTACGTATT+TGG + chr4_3:10315798-10315817 Msa0629450:three_prime_UTR 40.0%
CATAAGCAACCTTTGCATGA+TGG - chr4_3:10315824-10315843 None:intergenic 40.0%
TCATCTGTGAGCTTGTCTCA+TGG - chr4_3:10310067-10310086 None:intergenic 45.0%
! AATGCATTTTGCTGATCGGC+AGG - chr4_3:10310119-10310138 None:intergenic 45.0%
ACACAATGGAAAGATCAGGC+TGG - chr4_3:10311260-10311279 None:intergenic 45.0%
AACCGTATGCCTAGAATCAG+TGG + chr4_3:10311702-10311721 Msa0629450:intron 45.0%
!! GACCACTGATTCTAGGCATA+CGG - chr4_3:10311707-10311726 None:intergenic 45.0%
ATTGTCGAAGGGTCCAAATG+AGG + chr4_3:10312142-10312161 Msa0629450:CDS 45.0%
TCCAAATGAGGTTTCCTTGC+AGG + chr4_3:10312154-10312173 Msa0629450:CDS 45.0%
TCCTGCAAGGAAACCTCATT+TGG - chr4_3:10312158-10312177 None:intergenic 45.0%
! AGTCCTCGCTACATTTTGCA+TGG + chr4_3:10312514-10312533 Msa0629450:intron 45.0%
GGCCAAATCACCCAAGTAAT+TGG + chr4_3:10312584-10312603 Msa0629450:intron 45.0%
CATGCTTTCATGAGGATGAG+AGG - chr4_3:10312622-10312641 None:intergenic 45.0%
! TGGTGTTGGGAAATCCTCTA+TGG + chr4_3:10312801-10312820 Msa0629450:intron 45.0%
CATCCAGCAATGTGAAATGG+TGG - chr4_3:10313281-10313300 None:intergenic 45.0%
CACCATTTCACATTGCTGGA+TGG + chr4_3:10313279-10313298 Msa0629450:CDS 45.0%
CACCATCCAGCAATGTGAAA+TGG - chr4_3:10313284-10313303 None:intergenic 45.0%
TGATGTCGTTCGTGATTCCT+AGG - chr4_3:10313729-10313748 None:intergenic 45.0%
TTCAAGATGCATGCCCTGAA+TGG - chr4_3:10313795-10313814 None:intergenic 45.0%
AAACTCTCACATGAGGCAGA+TGG + chr4_3:10313957-10313976 Msa0629450:CDS 45.0%
TCGTGAGTACGTGGTACATA+AGG - chr4_3:10314217-10314236 None:intergenic 45.0%
TATGTACCACGTACTCACGA+AGG + chr4_3:10314217-10314236 Msa0629450:CDS 45.0%
CTCACGAAGGACTCTTAAAG+TGG + chr4_3:10314230-10314249 Msa0629450:CDS 45.0%
CTTGCACAGTCATGGCATTT+GGG + chr4_3:10314619-10314638 Msa0629450:intron 45.0%
! TTGAATTTGAGGCTCGAGCA+TGG + chr4_3:10314800-10314819 Msa0629450:intron 45.0%
CTTTAGTGCCCACCAAAAAG+TGG + chr4_3:10315125-10315144 Msa0629450:intron 45.0%
!!! CTTCTCAACCCACTTTTTGG+TGG - chr4_3:10315137-10315156 None:intergenic 45.0%
AATTCGCCTTCCCATGTATG+CGG + chr4_3:10315582-10315601 Msa0629450:CDS 45.0%
! TAACCATTGGTGTCTGCTTC+TGG + chr4_3:10315770-10315789 Msa0629450:three_prime_UTR 45.0%
ATACCAGAAGCAGACACCAA+TGG - chr4_3:10315776-10315795 None:intergenic 45.0%
CGTATTTGGCCATCATGCAA+AGG + chr4_3:10315812-10315831 Msa0629450:three_prime_UTR 45.0%
!! AAAAAATGTAAAAATTAATT+GGG - chr4_3:10311965-10311984 None:intergenic 5.0%
!! ATATATTGTAAAATATATAA+AGG - chr4_3:10312382-10312401 None:intergenic 5.0%
AGAGAAACTGGGTGTGAACC+TGG - chr4_3:10311006-10311025 None:intergenic 50.0%
CACACCCAGTTTCTCTCAAC+AGG + chr4_3:10311010-10311029 Msa0629450:five_prime_UTR 50.0%
!! GGGAGTGTTAAGGAGTTGAG+TGG - chr4_3:10311222-10311241 None:intergenic 50.0%
! ATCAGGCTGGCTATGTGGTT+GGG - chr4_3:10311247-10311266 None:intergenic 50.0%
! GAAAGATCAGGCTGGCTATG+TGG - chr4_3:10311252-10311271 None:intergenic 50.0%
TCTACAACAATGCCTGGTGC+TGG + chr4_3:10311378-10311397 Msa0629450:intron 50.0%
TATGCAACATGGAAGGCCGA+TGG + chr4_3:10312060-10312079 Msa0629450:five_prime_UTR 50.0%
GCTTTCATGAGGATGAGAGG+AGG - chr4_3:10312619-10312638 None:intergenic 50.0%
AGCTGTAACCAACTCCAAGC+TGG + chr4_3:10312781-10312800 Msa0629450:intron 50.0%
AACCAACTCCAAGCTGGTGT+TGG + chr4_3:10312787-10312806 Msa0629450:intron 50.0%
ACCAACTCCAAGCTGGTGTT+GGG + chr4_3:10312788-10312807 Msa0629450:intron 50.0%
AGGATTTCCCAACACCAGCT+TGG - chr4_3:10312798-10312817 None:intergenic 50.0%
GACCCACCATTTCACATTGC+TGG + chr4_3:10313275-10313294 Msa0629450:CDS 50.0%
CACATTGCTGGATGGTGAGA+TGG + chr4_3:10313287-10313306 Msa0629450:CDS 50.0%
GGGAAAGACACGTTCAACTG+AGG - chr4_3:10313564-10313583 None:intergenic 50.0%
! GCCGATTCTTGATGAGAGAC+TGG + chr4_3:10314063-10314082 Msa0629450:intron 50.0%
AAGAGTCCTTCGTGAGTACG+TGG - chr4_3:10314226-10314245 None:intergenic 50.0%
!! TTTTAGCTGCTTCCATCGGC+AGG + chr4_3:10314376-10314395 Msa0629450:intron 50.0%
GCGGGGAAAGAAGAAACTCT+TGG + chr4_3:10314433-10314452 Msa0629450:CDS 50.0%
! TAACCTGGCTTGCACAGTCA+TGG + chr4_3:10314611-10314630 Msa0629450:intron 50.0%
GCTTGCACAGTCATGGCATT+TGG + chr4_3:10314618-10314637 Msa0629450:intron 50.0%
GCTTGGCCTGCTTGAATTTG+AGG + chr4_3:10314789-10314808 Msa0629450:intron 50.0%
CTCGAGCCTCAAATTCAAGC+AGG - chr4_3:10314798-10314817 None:intergenic 50.0%
! GAATCACCTTCGCTGCTTTG+CGG - chr4_3:10315650-10315669 None:intergenic 50.0%
GCAGCGAAGGTGATTCATTG+TGG + chr4_3:10315654-10315673 Msa0629450:exon 50.0%
ACCACTAGTATGCAGGCCAG+AGG + chr4_3:10310967-10310986 Msa0629450:intron 55.0%
TCCTCTGGCCTGCATACTAG+TGG - chr4_3:10310971-10310990 None:intergenic 55.0%
!! TGGTTGGGGTGGGAGTGTTA+AGG - chr4_3:10311232-10311251 None:intergenic 55.0%
! TCAGGCTGGCTATGTGGTTG+GGG - chr4_3:10311246-10311265 None:intergenic 55.0%
! GATCAGGCTGGCTATGTGGT+TGG - chr4_3:10311248-10311267 None:intergenic 55.0%
GGTTCTCAGAAACCAGCACC+AGG - chr4_3:10311393-10311412 None:intergenic 55.0%
CATGGAAGGCCGATGGTACA+CGG + chr4_3:10312067-10312086 Msa0629450:five_prime_UTR 55.0%
TTCCTGCTGTGCTCCAAGTC+TGG + chr4_3:10312457-10312476 Msa0629450:intron 55.0%
GCGAGGACTTGACAGAGTAG+AGG - chr4_3:10312503-10312522 None:intergenic 55.0%
TCCCAACACCAGCTTGGAGT+TGG - chr4_3:10312792-10312811 None:intergenic 55.0%
CATAAGGATCGTCCCAACCC+TGG - chr4_3:10314201-10314220 None:intergenic 55.0%
TATCACCTCCAACCTGCCGA+TGG - chr4_3:10314391-10314410 None:intergenic 55.0%
! ATCGGCAGGTTGGAGGTGAT+AGG + chr4_3:10314390-10314409 Msa0629450:intron 55.0%
! TCGGCAGGTTGGAGGTGATA+GGG + chr4_3:10314391-10314410 Msa0629450:intron 55.0%
ATGCCATGACTGTGCAAGCC+AGG - chr4_3:10314617-10314636 None:intergenic 55.0%
TCCTGTCCGCATACATGGGA+AGG - chr4_3:10315591-10315610 None:intergenic 55.0%
GCTGGCTATGTGGTTGGGGT+GGG - chr4_3:10311242-10311261 None:intergenic 60.0%
TGCCAGACTTGGAGCACAGC+AGG - chr4_3:10312462-10312481 None:intergenic 60.0%
AGCTGCTTCCATCGGCAGGT+TGG + chr4_3:10314380-10314399 Msa0629450:intron 60.0%
! TGCTTCCATCGGCAGGTTGG+AGG + chr4_3:10314383-10314402 Msa0629450:intron 60.0%
GCCTTCCCATGTATGCGGAC+AGG + chr4_3:10315587-10315606 Msa0629450:CDS 60.0%
CTCATGCCGCAAAGCAGCGA+AGG + chr4_3:10315641-10315660 Msa0629450:CDS 60.0%
AACTCGGCAGCACTGCTGCA+AGG - chr4_3:10315859-10315878 None:intergenic 60.0%
! GGCTGGCTATGTGGTTGGGG+TGG - chr4_3:10311243-10311262 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 10309585 10316133 10309585 ID=Msa0629450;Name=Msa0629450
chr4_3 mRNA 10309585 10316133 10309585 ID=Msa0629450-mRNA-1;Parent=Msa0629450;Name=Msa0629450-mRNA-1;_AED=0.16;_eAED=0.16;_QI=530|0.88|1|1|0.55|0.5|10|467|261
chr4_3 exon 10309585 10309877 10309585 ID=Msa0629450-mRNA-1:exon:3161;Parent=Msa0629450-mRNA-1
chr4_3 exon 10310059 10310178 10310059 ID=Msa0629450-mRNA-1:exon:3162;Parent=Msa0629450-mRNA-1
chr4_3 exon 10310982 10311031 10310982 ID=Msa0629450-mRNA-1:exon:3163;Parent=Msa0629450-mRNA-1
chr4_3 exon 10312026 10312191 10312026 ID=Msa0629450-mRNA-1:exon:3164;Parent=Msa0629450-mRNA-1
chr4_3 exon 10313261 10313398 10313261 ID=Msa0629450-mRNA-1:exon:3165;Parent=Msa0629450-mRNA-1
chr4_3 exon 10313894 10313992 10313894 ID=Msa0629450-mRNA-1:exon:3166;Parent=Msa0629450-mRNA-1
chr4_3 exon 10314202 10314291 10314202 ID=Msa0629450-mRNA-1:exon:3167;Parent=Msa0629450-mRNA-1
chr4_3 exon 10314398 10314479 10314398 ID=Msa0629450-mRNA-1:exon:3168;Parent=Msa0629450-mRNA-1
chr4_3 exon 10315309 10315439 10315309 ID=Msa0629450-mRNA-1:exon:3169;Parent=Msa0629450-mRNA-1
chr4_3 exon 10315520 10316133 10315520 ID=Msa0629450-mRNA-1:exon:3170;Parent=Msa0629450-mRNA-1
chr4_3 five_prime_UTR 10309585 10309877 10309585 ID=Msa0629450-mRNA-1:five_prime_utr;Parent=Msa0629450-mRNA-1
chr4_3 five_prime_UTR 10310059 10310178 10310059 ID=Msa0629450-mRNA-1:five_prime_utr;Parent=Msa0629450-mRNA-1
chr4_3 five_prime_UTR 10310982 10311031 10310982 ID=Msa0629450-mRNA-1:five_prime_utr;Parent=Msa0629450-mRNA-1
chr4_3 five_prime_UTR 10312026 10312092 10312026 ID=Msa0629450-mRNA-1:five_prime_utr;Parent=Msa0629450-mRNA-1
chr4_3 CDS 10312093 10312191 10312093 ID=Msa0629450-mRNA-1:cds;Parent=Msa0629450-mRNA-1
chr4_3 CDS 10313261 10313398 10313261 ID=Msa0629450-mRNA-1:cds;Parent=Msa0629450-mRNA-1
chr4_3 CDS 10313894 10313992 10313894 ID=Msa0629450-mRNA-1:cds;Parent=Msa0629450-mRNA-1
chr4_3 CDS 10314202 10314291 10314202 ID=Msa0629450-mRNA-1:cds;Parent=Msa0629450-mRNA-1
chr4_3 CDS 10314398 10314479 10314398 ID=Msa0629450-mRNA-1:cds;Parent=Msa0629450-mRNA-1
chr4_3 CDS 10315309 10315439 10315309 ID=Msa0629450-mRNA-1:cds;Parent=Msa0629450-mRNA-1
chr4_3 CDS 10315520 10315666 10315520 ID=Msa0629450-mRNA-1:cds;Parent=Msa0629450-mRNA-1
chr4_3 three_prime_UTR 10315667 10316133 10315667 ID=Msa0629450-mRNA-1:three_prime_utr;Parent=Msa0629450-mRNA-1
Gene Sequence

>Msa0629450

ATGATGTTAATAACAATGGATGGGTGTTACTTGATCGACAAAAATTTTAATTGTCGAAGGGTCCAAATGAGGTTTCCTTGCAGGAGTACTACTAATGAGGGTTTGGGCGAGAAGACCCACCATTTCACATTGCTGGATGGTGAGATGGTTATCGATACCTTGCCAGATTCAAATAAGCAGGAGAGAAGATACCTTATATATGATATTATGGCAATCAACCATGTTTCAGTAATAGAGGTAAGGAGGAAAGATTTTTGGTTGCTCTCTACTGTCACAAAGCTTTTGAAGGAATTCATTAAAAAACTCTCACATGAGGCAGATGGTCTTATATTTCAGGGTTGGGACGATCCTTATGTACCACGTACTCACGAAGGACTCTTAAAGTGGAAATACGCCAATTTAAATTCAGTTGACTTTCTGTTTGAGGTTGGAGGTGATAGGGAGCTACTTTTTGTGTATGAGCGGGGAAAGAAGAAACTCTTGGATGGGAATAAGGTTGCTTTCAAAGATGGCACAGAGCCTTCATTTTATTCAGGAAAGATCATCGAGTGTTCTTGGGATTTTGATAACCTGGAATGGATATTCTTGCAAATTAGAACAGATAAATCAACTCCAAATGAGTTTAATACTTACAGAAAGGTGATGCGAAGCATAAAAGACAACATCACAGAGGAAGACTTGTTGAATGAAATAAATGAGATAATTCGCCTTCCCATGTATGCGGACAGGATAAAAAGTGATAGTAAAGCAAATCAGATTGCTCATGCCGCAAAGCAGCGAAGGTGA

Protein sequence

>Msa0629450

MMLITMDGCYLIDKNFNCRRVQMRFPCRSTTNEGLGEKTHHFTLLDGEMVIDTLPDSNKQERRYLIYDIMAINHVSVIEVRRKDFWLLSTVTKLLKEFIKKLSHEADGLIFQGWDDPYVPRTHEGLLKWKYANLNSVDFLFEVGGDRELLFVYERGKKKLLDGNKVAFKDGTEPSFYSGKIIECSWDFDNLEWIFLQIRTDKSTPNEFNTYRKVMRSIKDNITEEDLLNEINEIIRLPMYADRIKSDSKANQIAHAAKQRR*