AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0909140


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0909140 MtrunA17_Chr8g0355661 87.898 157 18 1 1 157 1 156 4.46e-98 279
Msa0909140 MtrunA17_Chr8g0355741 80.892 157 30 0 1 157 1 157 7.12e-92 263
Msa0909140 MtrunA17_Chr8g0355721 79.085 153 32 0 1 153 1 153 3.61e-89 256
Msa0909140 MtrunA17_Chr8g0355811 75.796 157 37 1 1 157 1 156 3.16e-86 249
Msa0909140 MtrunA17_Chr8g0355801 73.885 157 40 1 1 157 1 156 3.73e-82 239
Msa0909140 MtrunA17_Chr8g0355821 71.613 155 43 1 1 155 1 154 1.02e-80 235
Msa0909140 MtrunA17_Chr8g0355781 71.711 152 43 0 1 152 1 152 3.01e-80 234
Msa0909140 MtrunA17_Chr8g0355761 71.711 152 43 0 1 152 1 152 5.39e-80 233
Msa0909140 MtrunA17_Chr8g0355791 73.248 157 41 1 1 157 1 156 1.03e-79 233
Msa0909140 MtrunA17_Chr8g0355641 69.231 156 48 0 1 156 1 156 1.18e-78 230
Msa0909140 MtrunA17_Chr8g0355771 71.338 157 44 1 1 157 1 156 1.94e-78 229
Msa0909140 MtrunA17_Chr1g0160381 38.562 153 91 2 1 151 5 156 4.05e-36 122
Msa0909140 MtrunA17_Chr1g0160371 39.869 153 89 2 1 151 1 152 1.03e-35 121
Msa0909140 MtrunA17_Chr1g0160391 35.897 156 92 4 1 149 1 155 1.06e-27 101
Msa0909140 MtrunA17_Chr8g0339261 33.793 145 93 3 6 149 8 150 2.07e-27 100
Msa0909140 MtrunA17_Chr1g0160801 37.162 148 84 5 7 152 7 147 2.34e-22 87.0
Msa0909140 MtrunA17_Chr1g0160351 43.011 93 51 1 61 151 1 93 6.89e-21 81.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0909140 AT5G28010.1 33.987 153 98 3 3 153 15 166 1.24e-25 96.3
Msa0909140 AT5G28010.2 33.987 153 98 3 3 153 15 166 1.24e-25 96.3
Msa0909140 AT1G70840.1 33.987 153 98 3 3 153 20 171 1.02e-23 91.7
Msa0909140 AT1G70890.1 35.294 153 96 3 3 153 7 158 1.04e-23 91.3
Msa0909140 AT5G28000.1 32.680 153 100 3 3 153 13 164 3.50e-23 89.7
Msa0909140 AT1G70830.5 34.641 153 97 3 3 153 22 173 8.29e-23 89.4
Msa0909140 AT1G70830.3 34.641 153 97 3 3 153 22 173 1.56e-22 89.4
Msa0909140 AT1G70830.2 34.641 153 97 3 3 153 22 173 7.12e-22 88.6
Msa0909140 AT1G70830.1 34.641 153 97 3 3 153 22 173 1.43e-21 89.4
Msa0909140 AT1G70830.1 33.333 153 99 3 3 153 184 335 4.49e-20 85.1
Msa0909140 AT1G70850.2 33.113 151 98 3 3 151 9 158 3.87e-21 86.3
Msa0909140 AT1G70850.3 33.333 150 97 3 3 150 9 157 1.02e-20 86.7
Msa0909140 AT1G70850.3 32.867 143 93 3 13 153 175 316 8.83e-19 81.3
Msa0909140 AT1G70850.1 33.333 150 97 3 3 150 9 157 1.02e-20 86.7
Msa0909140 AT1G70850.1 32.867 143 93 3 13 153 175 316 8.83e-19 81.3
Msa0909140 AT1G70870.1 33.775 151 87 3 1 151 1 138 1.46e-20 82.4
Msa0909140 AT1G70830.4 33.333 153 99 3 3 153 137 288 1.77e-20 85.5
Msa0909140 AT1G23120.1 28.667 150 102 3 1 150 1 145 2.68e-20 82.0
Msa0909140 AT1G23120.2 29.167 144 97 3 7 150 57 195 8.53e-20 82.0
Msa0909140 AT1G70880.1 31.373 153 102 3 3 153 8 159 3.13e-19 79.7
Msa0909140 AT4G23670.1 32.026 153 101 3 1 152 1 151 7.94e-18 75.9
Msa0909140 AT1G23130.1 28.188 149 105 2 3 150 10 157 1.33e-17 75.5
Msa0909140 AT1G14930.1 28.025 157 110 3 1 156 1 155 6.11e-17 73.6
Msa0909140 AT1G35260.1 28.767 146 100 3 7 150 6 149 2.51e-15 69.3
Msa0909140 AT2G01520.1 28.758 153 106 3 1 152 1 151 3.01e-15 68.9
Msa0909140 AT1G24020.1 30.921 152 103 2 1 151 1 151 1.60e-14 67.0
Msa0909140 AT1G24020.2 30.921 152 103 2 1 151 1 151 1.60e-14 67.0
Msa0909140 AT4G14060.1 29.412 153 105 3 1 152 1 151 2.61e-14 66.6
Msa0909140 AT4G23680.1 28.947 152 105 3 1 151 1 150 3.51e-14 66.2
Msa0909140 AT1G14940.1 27.389 157 111 3 1 156 1 155 4.33e-14 66.2
Msa0909140 AT2G01530.1 29.412 153 105 3 1 152 1 151 4.43e-14 65.9
Msa0909140 AT1G30990.1 29.139 151 103 4 1 150 1 148 4.90e-12 60.5
Msa0909140 AT1G14950.1 26.752 157 112 3 1 156 1 155 8.22e-12 60.1
Msa0909140 AT3G26450.1 27.922 154 107 4 1 152 1 152 1.97e-11 58.9

Find 41 sgRNAs with CRISPR-Local

Find 141 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTAATGAAATTTCTATTTAT+AGG 0.230908 6_2:-10319085 Msa0909140:five_prime_UTR
ATCTTCACCTTCATGAAGTT+TGG 0.292428 6_2:+10318852 None:intergenic
ATGTGATGCAAATCAATAAA+TGG 0.304656 6_2:-10317616 Msa0909140:three_prime_UTR
ATGGCACTGCTGCTGCTAAA+TGG 0.310932 6_2:-10317910 Msa0909140:CDS
AATGGCTGGATGGACTTATT+AGG 0.345844 6_2:-10317845 Msa0909140:CDS
CATTCAGAAATGGTGCTTGC+TGG 0.350620 6_2:-10318982 Msa0909140:exon
CACCCTTATCAATTACTTCA+AGG 0.382574 6_2:+10317933 None:intergenic
AATAAGTCCATCCAGCCATT+TGG 0.421732 6_2:+10317848 None:intergenic
TTGAATATGAGAAGATCAAT+GGG 0.422622 6_2:-10317883 Msa0909140:CDS
AAATTTCTATTTATAGGCAT+GGG 0.424875 6_2:-10319079 Msa0909140:five_prime_UTR
GAAATAGAAGAAAGAAACTA+GGG 0.428379 6_2:+10319031 None:intergenic
TAGGGTTGATATGATGAAAC+TGG 0.435781 6_2:+10319049 None:intergenic
CATCCTTGAAGTAATTGATA+AGG 0.438738 6_2:-10317936 Msa0909140:CDS
TACTCGTCGTAATAGCATAA+TGG 0.448496 6_2:-10317690 Msa0909140:three_prime_UTR
GTTGAATATGAGAAGATCAA+TGG 0.452552 6_2:-10317884 Msa0909140:CDS
AGACATTGATGAGCACTATA+AGG 0.462118 6_2:-10317969 Msa0909140:CDS
TGATCTTAGTTTGAATGTGC+TGG 0.474089 6_2:-10317660 Msa0909140:three_prime_UTR
AAAATAACTTACAAGCTCTT+CGG 0.484855 6_2:-10317995 Msa0909140:CDS
GAAATTTCTATTTATAGGCA+TGG 0.485297 6_2:-10319080 Msa0909140:five_prime_UTR
ATCCTTGAAGTAATTGATAA+GGG 0.486541 6_2:-10317935 Msa0909140:CDS
AAACACTGGACTTATGTCAT+AGG 0.490184 6_2:-10318808 Msa0909140:intron
AACTTCATGAAGGTGAAGAT+TGG 0.494334 6_2:-10318849 Msa0909140:CDS
AGTTTGAAGAACTTGTCAAC+GGG 0.511180 6_2:+10318928 None:intergenic
AAAGAAAGTAACAAATATGA+TGG 0.511553 6_2:-10317759 Msa0909140:three_prime_UTR
AGAAATAGAAGAAAGAAACT+AGG 0.521830 6_2:+10319030 None:intergenic
ATATTGACCCTCCAAATGGC+TGG 0.525180 6_2:-10317859 Msa0909140:CDS
GGTAAACTTAGTACTGAACT+TGG 0.538495 6_2:-10318961 Msa0909140:CDS
GGGGATATTGACCCTCCAAA+TGG 0.539126 6_2:-10317863 Msa0909140:CDS
CTTCATGCCAAACTTCATGA+AGG 0.543027 6_2:-10318859 Msa0909140:CDS
GAAGTAATTGATAAGGGTGA+TGG 0.549119 6_2:-10317929 Msa0909140:CDS
AAGTCCATCCAGCCATTTGG+AGG 0.551025 6_2:+10317851 None:intergenic
TGACCCTCCAAATGGCTGGA+TGG 0.557517 6_2:-10317855 Msa0909140:CDS
ATAACTTACAAGCTCTTCGG+TGG 0.595817 6_2:-10317992 Msa0909140:CDS
GTTGATGCTCATCTTGTCAA+AGG 0.600604 6_2:-10317806 Msa0909140:CDS
TAGTTTGAAGAACTTGTCAA+CGG 0.601012 6_2:+10318927 None:intergenic
TGACATCACAATAGATGGCA+AGG 0.606404 6_2:-10318065 Msa0909140:intron
AATTTCTATTTATAGGCATG+GGG 0.609757 6_2:-10319078 Msa0909140:five_prime_UTR
GTAAACTTAGTACTGAACTT+GGG 0.614711 6_2:-10318960 Msa0909140:CDS
ACACTGATTCAGTTAAACAC+TGG 0.620261 6_2:-10318822 Msa0909140:CDS
AGTCCATCCAGCCATTTGGA+GGG 0.649199 6_2:+10317852 None:intergenic
TGAATATGAGAAGATCAATG+GGG 0.778110 6_2:-10317882 Msa0909140:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTTTAAAAACTATTTTATT+TGG - chr6_2:10318439-10318458 Msa0909140:intron 10.0%
!!! ATACATTGTTTTAATTTAAT+TGG - chr6_2:10318530-10318549 Msa0909140:intron 10.0%
!!! TGTTTAAAAACTATTTTATT+TGG - chr6_2:10318439-10318458 Msa0909140:intron 10.0%
!!! ATACATTGTTTTAATTTAAT+TGG - chr6_2:10318530-10318549 Msa0909140:intron 10.0%
!! GTAATGAAATTTCTATTTAT+AGG - chr6_2:10317546-10317565 Msa0909140:three_prime_UTR 15.0%
!!! TTTTTTTTTTCATTCAGAAA+TGG - chr6_2:10317639-10317658 Msa0909140:three_prime_UTR 15.0%
!! GTAATGAAATTTCTATTTAT+AGG - chr6_2:10317546-10317565 Msa0909140:three_prime_UTR 15.0%
!!! TTTTTTTTTTCATTCAGAAA+TGG - chr6_2:10317639-10317658 Msa0909140:three_prime_UTR 15.0%
!! AAATTTCTATTTATAGGCAT+GGG - chr6_2:10317552-10317571 Msa0909140:three_prime_UTR 20.0%
!! TGCTCTTATTAATTGAATTA+AGG + chr6_2:10317914-10317933 None:intergenic 20.0%
!!! AATTCAATTAATAAGAGCAT+AGG - chr6_2:10317915-10317934 Msa0909140:CDS 20.0%
!!! ATTCAATTAATAAGAGCATA+GGG - chr6_2:10317916-10317935 Msa0909140:CDS 20.0%
!! CATAATCTTCGTATAAAATA+TGG + chr6_2:10317943-10317962 None:intergenic 20.0%
!! ACAATATATAGAATAAGTGA+TGG - chr6_2:10318155-10318174 Msa0909140:intron 20.0%
!! GATTTACATGTCTAAATAAA+TGG - chr6_2:10318208-10318227 Msa0909140:intron 20.0%
!! TAAAATGCTAAATACTCATT+AGG - chr6_2:10318278-10318297 Msa0909140:intron 20.0%
!! GTAGAGTTATGAAAAATATA+TGG + chr6_2:10318510-10318529 None:intergenic 20.0%
!! AAAGAAAGTAACAAATATGA+TGG - chr6_2:10318872-10318891 Msa0909140:CDS 20.0%
!! AAATTTCTATTTATAGGCAT+GGG - chr6_2:10317552-10317571 Msa0909140:three_prime_UTR 20.0%
!! TGCTCTTATTAATTGAATTA+AGG + chr6_2:10317914-10317933 None:intergenic 20.0%
!!! AATTCAATTAATAAGAGCAT+AGG - chr6_2:10317915-10317934 Msa0909140:CDS 20.0%
!!! ATTCAATTAATAAGAGCATA+GGG - chr6_2:10317916-10317935 Msa0909140:CDS 20.0%
!! CATAATCTTCGTATAAAATA+TGG + chr6_2:10317943-10317962 None:intergenic 20.0%
!! ACAATATATAGAATAAGTGA+TGG - chr6_2:10318155-10318174 Msa0909140:intron 20.0%
!! GATTTACATGTCTAAATAAA+TGG - chr6_2:10318208-10318227 Msa0909140:intron 20.0%
!! TAAAATGCTAAATACTCATT+AGG - chr6_2:10318278-10318297 Msa0909140:intron 20.0%
!! GTAGAGTTATGAAAAATATA+TGG + chr6_2:10318510-10318529 None:intergenic 20.0%
!! AAAGAAAGTAACAAATATGA+TGG - chr6_2:10318872-10318891 Msa0909140:CDS 20.0%
! GAAATTTCTATTTATAGGCA+TGG - chr6_2:10317551-10317570 Msa0909140:three_prime_UTR 25.0%
! AATTTCTATTTATAGGCATG+GGG - chr6_2:10317553-10317572 Msa0909140:three_prime_UTR 25.0%
! GAAATAGAAGAAAGAAACTA+GGG + chr6_2:10317603-10317622 None:intergenic 25.0%
! AGAAATAGAAGAAAGAAACT+AGG + chr6_2:10317604-10317623 None:intergenic 25.0%
! AAATAAACAAGATGATGACT+TGG + chr6_2:10317881-10317900 None:intergenic 25.0%
! ACTTTATCTTTGTCATCTTT+AGG + chr6_2:10317967-10317986 None:intergenic 25.0%
!! TATTGTCTCATTGATTGATT+TGG + chr6_2:10318141-10318160 None:intergenic 25.0%
! AAAATAACTTACAAGCTCTT+CGG - chr6_2:10318636-10318655 Msa0909140:intron 25.0%
! ATCCTTGAAGTAATTGATAA+GGG - chr6_2:10318696-10318715 Msa0909140:intron 25.0%
! TTGAATATGAGAAGATCAAT+GGG - chr6_2:10318748-10318767 Msa0909140:intron 25.0%
! ATGTGATGCAAATCAATAAA+TGG - chr6_2:10319015-10319034 Msa0909140:five_prime_UTR 25.0%
!! ATTTTTGTAACAACCAATAG+TGG - chr6_2:10319082-10319101 Msa0909140:five_prime_UTR 25.0%
! GAAATTTCTATTTATAGGCA+TGG - chr6_2:10317551-10317570 Msa0909140:three_prime_UTR 25.0%
! AATTTCTATTTATAGGCATG+GGG - chr6_2:10317553-10317572 Msa0909140:three_prime_UTR 25.0%
! GAAATAGAAGAAAGAAACTA+GGG + chr6_2:10317603-10317622 None:intergenic 25.0%
! AGAAATAGAAGAAAGAAACT+AGG + chr6_2:10317604-10317623 None:intergenic 25.0%
! AAATAAACAAGATGATGACT+TGG + chr6_2:10317881-10317900 None:intergenic 25.0%
! ACTTTATCTTTGTCATCTTT+AGG + chr6_2:10317967-10317986 None:intergenic 25.0%
!! TATTGTCTCATTGATTGATT+TGG + chr6_2:10318141-10318160 None:intergenic 25.0%
! AAAATAACTTACAAGCTCTT+CGG - chr6_2:10318636-10318655 Msa0909140:intron 25.0%
! ATCCTTGAAGTAATTGATAA+GGG - chr6_2:10318696-10318715 Msa0909140:intron 25.0%
! TTGAATATGAGAAGATCAAT+GGG - chr6_2:10318748-10318767 Msa0909140:intron 25.0%
! ATGTGATGCAAATCAATAAA+TGG - chr6_2:10319015-10319034 Msa0909140:five_prime_UTR 25.0%
!! ATTTTTGTAACAACCAATAG+TGG - chr6_2:10319082-10319101 Msa0909140:five_prime_UTR 25.0%
! GTAAACTTAGTACTGAACTT+GGG - chr6_2:10317671-10317690 Msa0909140:three_prime_UTR 30.0%
TAGTTTGAAGAACTTGTCAA+CGG + chr6_2:10317707-10317726 None:intergenic 30.0%
AAAAATAAGACACTGTTTCC+TGG - chr6_2:10318013-10318032 Msa0909140:CDS 30.0%
ACAAATTCATATATGATGCC+AGG + chr6_2:10318034-10318053 None:intergenic 30.0%
CATATATGAATTTGTGCAGA+TGG - chr6_2:10318039-10318058 Msa0909140:CDS 30.0%
ATAGATACGTAGTACATACT+TGG - chr6_2:10318239-10318258 Msa0909140:intron 30.0%
CATCCTTGAAGTAATTGATA+AGG - chr6_2:10318695-10318714 Msa0909140:intron 30.0%
GTTGAATATGAGAAGATCAA+TGG - chr6_2:10318747-10318766 Msa0909140:intron 30.0%
TGAATATGAGAAGATCAATG+GGG - chr6_2:10318749-10318768 Msa0909140:intron 30.0%
!!! CAATAGTGGTGTTTTTTTCT+CGG - chr6_2:10319096-10319115 Msa0909140:five_prime_UTR 30.0%
! GTAAACTTAGTACTGAACTT+GGG - chr6_2:10317671-10317690 Msa0909140:three_prime_UTR 30.0%
TAGTTTGAAGAACTTGTCAA+CGG + chr6_2:10317707-10317726 None:intergenic 30.0%
AAAAATAAGACACTGTTTCC+TGG - chr6_2:10318013-10318032 Msa0909140:CDS 30.0%
ACAAATTCATATATGATGCC+AGG + chr6_2:10318034-10318053 None:intergenic 30.0%
CATATATGAATTTGTGCAGA+TGG - chr6_2:10318039-10318058 Msa0909140:CDS 30.0%
ATAGATACGTAGTACATACT+TGG - chr6_2:10318239-10318258 Msa0909140:intron 30.0%
CATCCTTGAAGTAATTGATA+AGG - chr6_2:10318695-10318714 Msa0909140:intron 30.0%
GTTGAATATGAGAAGATCAA+TGG - chr6_2:10318747-10318766 Msa0909140:intron 30.0%
TGAATATGAGAAGATCAATG+GGG - chr6_2:10318749-10318768 Msa0909140:intron 30.0%
!! TAGGGTTGATATGATGAAAC+TGG + chr6_2:10317585-10317604 None:intergenic 35.0%
! GGTAAACTTAGTACTGAACT+TGG - chr6_2:10317670-10317689 Msa0909140:three_prime_UTR 35.0%
AGTTTGAAGAACTTGTCAAC+GGG + chr6_2:10317706-10317725 None:intergenic 35.0%
ATCTTCACCTTCATGAAGTT+TGG + chr6_2:10317782-10317801 None:intergenic 35.0%
AACTTCATGAAGGTGAAGAT+TGG - chr6_2:10317782-10317801 Msa0909140:exon 35.0%
!! ACACTGATTCAGTTAAACAC+TGG - chr6_2:10317809-10317828 Msa0909140:CDS 35.0%
AAACACTGGACTTATGTCAT+AGG - chr6_2:10317823-10317842 Msa0909140:CDS 35.0%
!! AAGATGATGACTTGGTTATG+AGG + chr6_2:10317873-10317892 None:intergenic 35.0%
ATATGAATTTGTGCAGATGG+AGG - chr6_2:10318042-10318061 Msa0909140:CDS 35.0%
AGACATTGATGAGCACTATA+AGG - chr6_2:10318662-10318681 Msa0909140:intron 35.0%
CACCCTTATCAATTACTTCA+AGG + chr6_2:10318701-10318720 None:intergenic 35.0%
GAAGTAATTGATAAGGGTGA+TGG - chr6_2:10318702-10318721 Msa0909140:intron 35.0%
TACTCGTCGTAATAGCATAA+TGG - chr6_2:10318941-10318960 Msa0909140:CDS 35.0%
! TGATCTTAGTTTGAATGTGC+TGG - chr6_2:10318971-10318990 Msa0909140:CDS 35.0%
CGAGAAAAAAACACCACTAT+TGG + chr6_2:10319098-10319117 None:intergenic 35.0%
!! TAGGGTTGATATGATGAAAC+TGG + chr6_2:10317585-10317604 None:intergenic 35.0%
! GGTAAACTTAGTACTGAACT+TGG - chr6_2:10317670-10317689 Msa0909140:three_prime_UTR 35.0%
AGTTTGAAGAACTTGTCAAC+GGG + chr6_2:10317706-10317725 None:intergenic 35.0%
ATCTTCACCTTCATGAAGTT+TGG + chr6_2:10317782-10317801 None:intergenic 35.0%
AACTTCATGAAGGTGAAGAT+TGG - chr6_2:10317782-10317801 Msa0909140:exon 35.0%
!! ACACTGATTCAGTTAAACAC+TGG - chr6_2:10317809-10317828 Msa0909140:CDS 35.0%
AAACACTGGACTTATGTCAT+AGG - chr6_2:10317823-10317842 Msa0909140:CDS 35.0%
!! AAGATGATGACTTGGTTATG+AGG + chr6_2:10317873-10317892 None:intergenic 35.0%
ATATGAATTTGTGCAGATGG+AGG - chr6_2:10318042-10318061 Msa0909140:CDS 35.0%
AGACATTGATGAGCACTATA+AGG - chr6_2:10318662-10318681 Msa0909140:intron 35.0%
CACCCTTATCAATTACTTCA+AGG + chr6_2:10318701-10318720 None:intergenic 35.0%
GAAGTAATTGATAAGGGTGA+TGG - chr6_2:10318702-10318721 Msa0909140:intron 35.0%
TACTCGTCGTAATAGCATAA+TGG - chr6_2:10318941-10318960 Msa0909140:CDS 35.0%
! TGATCTTAGTTTGAATGTGC+TGG - chr6_2:10318971-10318990 Msa0909140:CDS 35.0%
CGAGAAAAAAACACCACTAT+TGG + chr6_2:10319098-10319117 None:intergenic 35.0%
CTTCATGCCAAACTTCATGA+AGG - chr6_2:10317772-10317791 Msa0909140:exon 40.0%
GTCCTAAACGATATGTGAGA+AGG - chr6_2:10318378-10318397 Msa0909140:intron 40.0%
TGCCTTCTCACATATCGTTT+AGG + chr6_2:10318383-10318402 None:intergenic 40.0%
TCCCATGACATCACAATAGA+TGG - chr6_2:10318561-10318580 Msa0909140:intron 40.0%
GCCATCTATTGTGATGTCAT+GGG + chr6_2:10318565-10318584 None:intergenic 40.0%
TGCCATCTATTGTGATGTCA+TGG + chr6_2:10318566-10318585 None:intergenic 40.0%
TGACATCACAATAGATGGCA+AGG - chr6_2:10318566-10318585 Msa0909140:intron 40.0%
ATAACTTACAAGCTCTTCGG+TGG - chr6_2:10318639-10318658 Msa0909140:intron 40.0%
AATAAGTCCATCCAGCCATT+TGG + chr6_2:10318786-10318805 None:intergenic 40.0%
! AATGGCTGGATGGACTTATT+AGG - chr6_2:10318786-10318805 Msa0909140:intron 40.0%
GTTGATGCTCATCTTGTCAA+AGG - chr6_2:10318825-10318844 Msa0909140:CDS 40.0%
CTTCATGCCAAACTTCATGA+AGG - chr6_2:10317772-10317791 Msa0909140:exon 40.0%
GTCCTAAACGATATGTGAGA+AGG - chr6_2:10318378-10318397 Msa0909140:intron 40.0%
TGCCTTCTCACATATCGTTT+AGG + chr6_2:10318383-10318402 None:intergenic 40.0%
TCCCATGACATCACAATAGA+TGG - chr6_2:10318561-10318580 Msa0909140:intron 40.0%
GCCATCTATTGTGATGTCAT+GGG + chr6_2:10318565-10318584 None:intergenic 40.0%
TGCCATCTATTGTGATGTCA+TGG + chr6_2:10318566-10318585 None:intergenic 40.0%
TGACATCACAATAGATGGCA+AGG - chr6_2:10318566-10318585 Msa0909140:intron 40.0%
ATAACTTACAAGCTCTTCGG+TGG - chr6_2:10318639-10318658 Msa0909140:intron 40.0%
AATAAGTCCATCCAGCCATT+TGG + chr6_2:10318786-10318805 None:intergenic 40.0%
! AATGGCTGGATGGACTTATT+AGG - chr6_2:10318786-10318805 Msa0909140:intron 40.0%
GTTGATGCTCATCTTGTCAA+AGG - chr6_2:10318825-10318844 Msa0909140:CDS 40.0%
CATTCAGAAATGGTGCTTGC+TGG - chr6_2:10317649-10317668 Msa0909140:three_prime_UTR 45.0%
TTGTGCAGATGGAGGATCTA+TGG - chr6_2:10318050-10318069 Msa0909140:CDS 45.0%
ATATTGACCCTCCAAATGGC+TGG - chr6_2:10318772-10318791 Msa0909140:intron 45.0%
CATTCAGAAATGGTGCTTGC+TGG - chr6_2:10317649-10317668 Msa0909140:three_prime_UTR 45.0%
TTGTGCAGATGGAGGATCTA+TGG - chr6_2:10318050-10318069 Msa0909140:CDS 45.0%
ATATTGACCCTCCAAATGGC+TGG - chr6_2:10318772-10318791 Msa0909140:intron 45.0%
CAGATGGAGGATCTATGGAG+AGG - chr6_2:10318055-10318074 Msa0909140:intron 50.0%
ATGGCACTGCTGCTGCTAAA+TGG - chr6_2:10318721-10318740 Msa0909140:intron 50.0%
GGGGATATTGACCCTCCAAA+TGG - chr6_2:10318768-10318787 Msa0909140:intron 50.0%
AGTCCATCCAGCCATTTGGA+GGG + chr6_2:10318782-10318801 None:intergenic 50.0%
AAGTCCATCCAGCCATTTGG+AGG + chr6_2:10318783-10318802 None:intergenic 50.0%
CAGATGGAGGATCTATGGAG+AGG - chr6_2:10318055-10318074 Msa0909140:intron 50.0%
ATGGCACTGCTGCTGCTAAA+TGG - chr6_2:10318721-10318740 Msa0909140:intron 50.0%
GGGGATATTGACCCTCCAAA+TGG - chr6_2:10318768-10318787 Msa0909140:intron 50.0%
AGTCCATCCAGCCATTTGGA+GGG + chr6_2:10318782-10318801 None:intergenic 50.0%
AAGTCCATCCAGCCATTTGG+AGG + chr6_2:10318783-10318802 None:intergenic 50.0%
TGACCCTCCAAATGGCTGGA+TGG - chr6_2:10318776-10318795 Msa0909140:intron 55.0%
TGACCCTCCAAATGGCTGGA+TGG - chr6_2:10318776-10318795 Msa0909140:intron 55.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 10317535 10319118 10317535 ID=Msa0909140;Name=Msa0909140
chr6_2 mRNA 10317535 10319118 10317535 ID=Msa0909140-mRNA-1;Parent=Msa0909140;Name=Msa0909140-mRNA-1;_AED=0.35;_eAED=0.35;_QI=123|1|1|1|1|1|2|252|157
chr6_2 exon 10317535 10318073 10317535 ID=Msa0909140-mRNA-1:exon:2652;Parent=Msa0909140-mRNA-1
chr6_2 exon 10318809 10319118 10318809 ID=Msa0909140-mRNA-1:exon:2651;Parent=Msa0909140-mRNA-1
chr6_2 five_prime_UTR 10318996 10319118 10318996 ID=Msa0909140-mRNA-1:five_prime_utr;Parent=Msa0909140-mRNA-1
chr6_2 CDS 10318809 10318995 10318809 ID=Msa0909140-mRNA-1:cds;Parent=Msa0909140-mRNA-1
chr6_2 CDS 10317787 10318073 10317787 ID=Msa0909140-mRNA-1:cds;Parent=Msa0909140-mRNA-1
chr6_2 three_prime_UTR 10317535 10317786 10317535 ID=Msa0909140-mRNA-1:three_prime_utr;Parent=Msa0909140-mRNA-1
Gene Sequence

>Msa0909140

ATGGTGCTTGCTGGTAAACTTAGTACTGAACTTGGGATCAAAACACCCGTTGACAAGTTCTTCAAACTATATGCATCAGAACTTCACGAAGTGCAAAACATTAGTGAAAGAATTCTTCATGCCAAACTTCATGAAGGTGAAGATTGGCATCACACTGATTCAGTTAAACACTGGACTTATGTCATAGATGGCAAGGTAAACACATGTCATGAGAGTGTTGAAGAAGTTGATGAACAGAACAAAAAAATAACTTACAAGCTCTTCGGTGGAGACATTGATGAGCACTATAAGGACTTTAAGCTCATCCTTGAAGTAATTGATAAGGGTGATGGCACTGCTGCTGCTAAATGGACAGTTGAATATGAGAAGATCAATGGGGATATTGACCCTCCAAATGGCTGGATGGACTTATTAGGCAAAGAAACTCGAGAAGTTGATGCTCATCTTGTCAAAGGCGAAAACATAGCTCTATAA

Protein sequence

>Msa0909140

MVLAGKLSTELGIKTPVDKFFKLYASELHEVQNISERILHAKLHEGEDWHHTDSVKHWTYVIDGKVNTCHESVEEVDEQNKKITYKLFGGDIDEHYKDFKLILEVIDKGDGTAAAKWTVEYEKINGDIDPPNGWMDLLGKETREVDAHLVKGENIAL*