AlfalfaGEDB | Msa0421180

M. sativa cultivar zhongmu-4 / Msa0421180

KEGG: K11593
GO: GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016043 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019219 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0034641 GO:0035194 GO:0035197 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0061980 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0098542 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
PFAM: PF16486.8

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0421180	XP_003601587.2	89.412	935	35	5	1	897	1	909	0.0	1616

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0421180	sp\|Q6YSJ5\|AGO16_ORYSJ	57.848	892	312	11	40	897	22	883	0.0	1028

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0421180	G7J9J9	89.412	935	35	5	1	897	1	909	0.0	1616

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0307280	Msa0421180	0.819570	1.083492e-52	-8.615850e-47
Msa0421180	Msa0513600	0.889474	2.344497e-73	-8.615850e-47
Msa0421180	Msa0687460	0.806908	6.546558e-50	-8.615850e-47
Msa0421180	Msa1072960	0.807481	4.950339e-50	-8.615850e-47
Msa0421180	Msa1160910	0.819968	8.788086e-53	-8.615850e-47
Msa0421180	Msa1430440	0.963017	1.424562e-121	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0421180	MtrunA17_Chr3g0121101	89.209	936	36	6	1	897	1	910	0.0	1608
Msa0421180	MtrunA17_Chr5g0440631	56.556	900	327	10	34	896	35	907	0.0	991
Msa0421180	MtrunA17_Chr3g0118281	54.647	893	338	10	40	896	130	991	0.0	965
Msa0421180	MtrunA17_Chr5g0440641	54.821	892	339	12	34	896	35	891	0.0	941
Msa0421180	MtrunA17_Chr6g0467081	54.027	894	339	12	40	896	40	898	0.0	923
Msa0421180	MtrunA17_Chr3g0080331	54.750	621	257	8	219	832	21	624	0.0	689
Msa0421180	MtrunA17_Chr6g0481121	35.633	884	450	25	92	897	267	1109	1.22e-144	457
Msa0421180	MtrunA17_Chr2g0308031	35.267	862	464	23	92	897	92	915	2.79e-142	445
Msa0421180	MtrunA17_Chr1g0166341	35.543	875	452	29	92	897	148	979	1.78e-141	445
Msa0421180	MtrunA17_Chr4g0062941	34.061	916	480	27	41	897	26	876	2.99e-140	439

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0421180	AT2G32940.1	57.848	892	308	10	37	897	24	878	0.0	993
Msa0421180	AT2G27040.1	52.935	903	359	11	31	897	52	924	0.0	930
Msa0421180	AT2G27040.2	52.935	903	359	11	31	897	52	924	0.0	930
Msa0421180	AT5G21150.1	52.941	884	353	11	46	897	44	896	0.0	919
Msa0421180	AT5G21030.2	47.403	924	372	19	15	897	4	854	0.0	791
Msa0421180	AT5G21030.1	47.697	912	364	19	27	897	11	850	0.0	784
Msa0421180	AT1G48410.1	35.268	896	435	27	92	897	208	1048	2.91e-142	449
Msa0421180	AT1G48410.3	35.229	897	436	27	92	897	208	1050	5.11e-142	449
Msa0421180	AT1G48410.2	35.229	897	436	27	92	897	208	1050	5.11e-142	449
Msa0421180	AT5G43810.4	34.237	885	450	29	92	897	157	988	3.94e-136	431

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Find 231 sgRNAs with CRISPR-Local

Find 1076 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAACTGTTGAAAGCAA+GGG	0.585910	3_2:-70078935	Msa0421180:CDS
AAAAGGATGATGGTATTATC+AGG	0.373300	3_2:-70075679	Msa0421180:intron
AAAATTCCACCTTCCATTAC+TGG	0.289479	3_2:+70076922	None:intergenic
AAAATTTAACCCTGTTGCAA+GGG	0.534798	3_2:-70076524	Msa0421180:CDS
AAAGGTTGCATCTGTAGCAT+CGG	0.579610	3_2:+70079057	None:intergenic
AAAGTTGAATTGGAATGTCA+GGG	0.586502	3_2:-70072029	Msa0421180:CDS
AAATGGAGAAGACAATAACT+CGG	0.665330	3_2:-70077690	Msa0421180:CDS
AAATTCCACCTTCCATTACT+GGG	0.473459	3_2:+70076923	None:intergenic
AAATTGGGTCTTAACATCTA+TGG	0.365758	3_2:+70071921	None:intergenic
AAATTTCAGGGCCTTGGAAA+AGG	0.493150	3_2:-70076325	Msa0421180:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTACTGATAATAGAATAGGT+TGG	+	chr3_2:70071662-70071681	None:intergenic	30.0%
CAACCTATTCTATTATCAGT+AGG	-	chr3_2:70071660-70071679	Msa0421180:three_prime_UTR	30.0%
TCACTTGACATACATTATAC+TGG	+	chr3_2:70071772-70071791	None:intergenic	30.0%
TCATTGCAATTTCCCTTATT+TGG	-	chr3_2:70071797-70071816	Msa0421180:three_prime_UTR	30.0%
TAAAAGAACTGTTGAAAGCA+AGG	-	chr3_2:70071865-70071884	Msa0421180:three_prime_UTR	30.0%
AAAAGAACTGTTGAAAGCAA+GGG	-	chr3_2:70071866-70071885	Msa0421180:three_prime_UTR	30.0%
TCAGGAGAAAACTGATTAAT+AGG	-	chr3_2:70071891-70071910	Msa0421180:three_prime_UTR	30.0%
TTCTTGAAGAAACATTTGCA+AGG	-	chr3_2:70072026-70072045	Msa0421180:CDS	30.0%
CAAGATTCCATGATAAGTAT+GGG	+	chr3_2:70072622-70072641	None:intergenic	30.0%
GATAGGAGAAAATCAATTAC+AGG	+	chr3_2:70072731-70072750	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	70071557	70079266	70071557	ID=Msa0421180;Name=Msa0421180
chr3_2	mRNA	70071557	70079266	70071557	ID=Msa0421180-mRNA-1;Parent=Msa0421180;Name=Msa0421180-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0\|0.89\|0.9\|1\|1\|1\|20\|452\|897
chr3_2	exon	70071557	70072175	70071557	ID=Msa0421180-mRNA-1:exon:16763;Parent=Msa0421180-mRNA-1
chr3_2	exon	70072258	70072289	70072258	ID=Msa0421180-mRNA-1:exon:16762;Parent=Msa0421180-mRNA-1
chr3_2	exon	70072373	70072467	70072373	ID=Msa0421180-mRNA-1:exon:16761;Parent=Msa0421180-mRNA-1
chr3_2	exon	70072631	70072704	70072631	ID=Msa0421180-mRNA-1:exon:16760;Parent=Msa0421180-mRNA-1
chr3_2	exon	70072775	70072895	70072775	ID=Msa0421180-mRNA-1:exon:16759;Parent=Msa0421180-mRNA-1
chr3_2	exon	70073033	70073096	70073033	ID=Msa0421180-mRNA-1:exon:16758;Parent=Msa0421180-mRNA-1
chr3_2	exon	70075680	70075834	70075680	ID=Msa0421180-mRNA-1:exon:16757;Parent=Msa0421180-mRNA-1
chr3_2	exon	70075970	70076107	70075970	ID=Msa0421180-mRNA-1:exon:16756;Parent=Msa0421180-mRNA-1
chr3_2	exon	70076226	70076338	70076226	ID=Msa0421180-mRNA-1:exon:16755;Parent=Msa0421180-mRNA-1
chr3_2	exon	70076428	70076593	70076428	ID=Msa0421180-mRNA-1:exon:16754;Parent=Msa0421180-mRNA-1
chr3_2	exon	70076690	70076803	70076690	ID=Msa0421180-mRNA-1:exon:16753;Parent=Msa0421180-mRNA-1
chr3_2	exon	70076913	70076975	70076913	ID=Msa0421180-mRNA-1:exon:16752;Parent=Msa0421180-mRNA-1
chr3_2	exon	70077121	70077228	70077121	ID=Msa0421180-mRNA-1:exon:16751;Parent=Msa0421180-mRNA-1
chr3_2	exon	70077307	70077423	70077307	ID=Msa0421180-mRNA-1:exon:16750;Parent=Msa0421180-mRNA-1
chr3_2	exon	70077562	70077730	70077562	ID=Msa0421180-mRNA-1:exon:16749;Parent=Msa0421180-mRNA-1
chr3_2	exon	70077853	70077950	70077853	ID=Msa0421180-mRNA-1:exon:16748;Parent=Msa0421180-mRNA-1
chr3_2	exon	70078030	70078127	70078030	ID=Msa0421180-mRNA-1:exon:16747;Parent=Msa0421180-mRNA-1
chr3_2	exon	70078216	70078307	70078216	ID=Msa0421180-mRNA-1:exon:16746;Parent=Msa0421180-mRNA-1
chr3_2	exon	70078474	70078692	70078474	ID=Msa0421180-mRNA-1:exon:16745;Parent=Msa0421180-mRNA-1
chr3_2	exon	70078776	70079266	70078776	ID=Msa0421180-mRNA-1:exon:16744;Parent=Msa0421180-mRNA-1
chr3_2	CDS	70078776	70079266	70078776	ID=Msa0421180-mRNA-1:cds;Parent=Msa0421180-mRNA-1
chr3_2	CDS	70078474	70078692	70078474	ID=Msa0421180-mRNA-1:cds;Parent=Msa0421180-mRNA-1
chr3_2	CDS	70078216	70078307	70078216	ID=Msa0421180-mRNA-1:cds;Parent=Msa0421180-mRNA-1
chr3_2	CDS	70078030	70078127	70078030	ID=Msa0421180-mRNA-1:cds;Parent=Msa0421180-mRNA-1
chr3_2	CDS	70077853	70077950	70077853	ID=Msa0421180-mRNA-1:cds;Parent=Msa0421180-mRNA-1
chr3_2	CDS	70077562	70077730	70077562	ID=Msa0421180-mRNA-1:cds;Parent=Msa0421180-mRNA-1
chr3_2	CDS	70077307	70077423	70077307	ID=Msa0421180-mRNA-1:cds;Parent=Msa0421180-mRNA-1
chr3_2	CDS	70077121	70077228	70077121	ID=Msa0421180-mRNA-1:cds;Parent=Msa0421180-mRNA-1
chr3_2	CDS	70076913	70076975	70076913	ID=Msa0421180-mRNA-1:cds;Parent=Msa0421180-mRNA-1
chr3_2	CDS	70076690	70076803	70076690	ID=Msa0421180-mRNA-1:cds;Parent=Msa0421180-mRNA-1
chr3_2	CDS	70076428	70076593	70076428	ID=Msa0421180-mRNA-1:cds;Parent=Msa0421180-mRNA-1
chr3_2	CDS	70076226	70076338	70076226	ID=Msa0421180-mRNA-1:cds;Parent=Msa0421180-mRNA-1
chr3_2	CDS	70075970	70076107	70075970	ID=Msa0421180-mRNA-1:cds;Parent=Msa0421180-mRNA-1
chr3_2	CDS	70075680	70075834	70075680	ID=Msa0421180-mRNA-1:cds;Parent=Msa0421180-mRNA-1
chr3_2	CDS	70073033	70073096	70073033	ID=Msa0421180-mRNA-1:cds;Parent=Msa0421180-mRNA-1
chr3_2	CDS	70072775	70072895	70072775	ID=Msa0421180-mRNA-1:cds;Parent=Msa0421180-mRNA-1
chr3_2	CDS	70072631	70072704	70072631	ID=Msa0421180-mRNA-1:cds;Parent=Msa0421180-mRNA-1
chr3_2	CDS	70072373	70072467	70072373	ID=Msa0421180-mRNA-1:cds;Parent=Msa0421180-mRNA-1
chr3_2	CDS	70072258	70072289	70072258	ID=Msa0421180-mRNA-1:cds;Parent=Msa0421180-mRNA-1
chr3_2	CDS	70072009	70072175	70072009	ID=Msa0421180-mRNA-1:cds;Parent=Msa0421180-mRNA-1
chr3_2	three_prime_UTR	70071557	70072008	70071557	ID=Msa0421180-mRNA-1:three_prime_utr;Parent=Msa0421180-mRNA-1

Gene Sequence

>Msa0421180

ATGGTGAGTGTACCTGACTTTGAAGAAGCTGTGGAGCCACCAGCTTTACCTCCATCACCTCCTGATGTGCTGTCTAGTATGGAAGCGGAACCAATAGCTCTCCCAACCTATTCTATTATCAGTAGGCTGAGTGTCGGGACCACAGGAAAACGCATACATTTGCTTGCAAATTTCTTTAAAGCTGCTGCCGATGCTACAGATGCAACCTTTTTCCAGTATAATGTATGTCAAGTGATTCTGTCATTGCAATTTCCCTTATTTGGCTTTGGCTTACTGAAGGTTTTTCAGGTTGCTATCATTTCAGAAGATAAAAGAACTGTTGAAAGCAAGGGCATCAGGAGAAAACTGATTAATAGGCTTCACCAAACATACTCTTCTGAACTTGGTGGCAAAAGCTTTGCGTACGATGGAGAAAGAACTTTGTACACAGTGGGTCCTCTTCCAGATAATAAATTTGAGTTCAATGTATTTCTTGAAGAAACATTTGCAAGCAGTACTGAGAGTTTTGGTGCTAATGGAAGCCCTCGCGAGGAAAATAAAAGGTCAAAACGTTCTTTTCAGTCAAAGACATTCACAGTGGAGATATGTTTTGCTGCCAAAATACCCTTGCAGTCCATTGTTCTTTCCCTTAAAGGGATCGAGTCATATGCTAATTCTCAGGATGCATTGAGGGTTCTTGATACCGTACTGAGGCAGCGAGCAGCTAACAGGAATTTCATCGATGTTGGAGGCGGAGTAGAAGGAGTTCGGGGTATTCATTCCAGTTTTCGTCTTACACAGGGAGGATTGTCTCTTAATATGGATGTGTCCACAACGACGATCATAAAACCTGGACCTGTAATTGATTTTCTCCTATCCAACCAGAGTGTGAGGGAACCTCGTTATATTGACTGGGCAAAGGCCAAGAGAATCCTTAAAAATTTAAGAGTTCGTGCTACACATCGTAACCAAGAATTCAAAATTTATGGCTTGAGTGAGAAACCCTGCATTCAACAACTTTTTAGTATGAAGATGAAAAATGGAGAAGACAATAACTCGGAGCAGACCGTGGATATTACCGTATATGAATATTTTGCTAAACACCGTGGCATTGAGCTGACCTCTTCTGCTTACTTTCCATGTCTTGATGTTGGGAAGCCAAATCGGCCCAACTTTTTGCCTCTGGAGCTATGTTCACTTGTTCCCCTCCAGCGGTATACAAAGGCATTATCTCCTGTGCAAAGAGCATCTTTAGTAGAAAAATCACGCCAAAAGCCTCAAGAAAAAATCAAAGTTCTGACAAATGCTATTGGAAATTCTGGCTATGATGATGATGCTGTTCTTGCCGCATGTGGTATTTCTATTGACAAGCAATTCACTCCAGTTGAAGGAAGAGTTCTTGAGACACCAAAGTTGAAGGTAGGTAATAATGAAGACTGCTTCCCCAGTAATGGAAGGTGGAATTTTAAAACGAAGAAACTTCTACAGCCATCAGATATTGGTTATTGGGCTGTTGTAAACTTTTCTAAACAATGTGATACTAGTTACATAACAAGGGAGCTGATTAGATGTGGAATGAGCAAGGGAATGAATATTGAGCGGCCATTTACTTTATTAGAGGAGGAAGCACAAATGAGAAAATTTAACCCTGTTGCAAGGGTTGAAAAGATGTTTTCCTTGCTGTCATCTAAACTTAATGGTCCACCAAAGTTGATTCTTTGTGTCTTGCCAGAGAGGAAAAACTGTGACATCTATGGGCCTTGGAAAAGGAAGTGTCTGAGTGATGTTGGGGTTGTCACACAGTGCATTTCCCCTCTCAAGATCACTGATCAATACCTCACTAACGTACTTCTTAAAATCAATTCTAAGCTTGGAGGAATAAATTCTTTGCTGGCAATAGAGCATTCTGGGCATCTTCCCTTGATTAAAGATACCCCAACGATGATTTTAGGGATGGATGTCTCTCATGGTTCCCCTGGCCGATCAGATATTCCATCAACAGCTGCTGTTGTTGGATCTCGATGCTGGCCTCTAATTTCGAGATATAGAGCATCTGTAAGATCACAGTCTCCTAAGGTGGAGATGATTGATTCTCTATTCAAGCCTGTGGATAAGATGAATGATGCTGGTATTTTAGAAAAAAAGGATGATGGTATTATCAGGGATGGAGTTGGTGAATCTCAATTTCAACAGGTTTTAGATGTAGAGCTTAACCAGATAATAAAGGCCTATAAACATATTGATGAGGTTGAGAACGATGATGTTCCCAAGTTCACTGTAATTGTGGCACAGAAGAATCACCATACAAAGCTGTTTCAAGCTAATGCTCTGGAAAACGTTCCTCCTGGGACAGTTGTCGATACAAACATTGTGCATCCAAGAAATTACGATTTCTACATGTGTGCTCATGCTGGAATGATTGGAACGTCTAGGCCTGTGCATTATCACGTGTTGCTTGATGAAATTGGATTCTCACCAGATGGCTTGCAAAACTTGATCAATTCGCTGTCTTACGTGAACCAGAGGAGCACAGCTGCAACCTCAATTGTGGCACCTATATACTATGCCCACCATGCTGCAGCTCAAATGAGAAAATTTATGAATTTTGATGATTTATCAGAAGCATCTCCAAGTCCTGATTCAGAGGGAAACATCCCCATTCAAGAGCTTCCAAAGTTGAATTGGAATGTCAGGGACTCAATGTTCTTCTGTTGA

Protein sequence

>Msa0421180

MVSVPDFEEAVEPPALPPSPPDVLSSMEAEPIALPTYSIISRLSVGTTGKRIHLLANFFKAAADATDATFFQYNVCQVILSLQFPLFGFGLLKVFQVAIISEDKRTVESKGIRRKLINRLHQTYSSELGGKSFAYDGERTLYTVGPLPDNKFEFNVFLEETFASSTESFGANGSPREENKRSKRSFQSKTFTVEICFAAKIPLQSIVLSLKGIESYANSQDALRVLDTVLRQRAANRNFIDVGGGVEGVRGIHSSFRLTQGGLSLNMDVSTTTIIKPGPVIDFLLSNQSVREPRYIDWAKAKRILKNLRVRATHRNQEFKIYGLSEKPCIQQLFSMKMKNGEDNNSEQTVDITVYEYFAKHRGIELTSSAYFPCLDVGKPNRPNFLPLELCSLVPLQRYTKALSPVQRASLVEKSRQKPQEKIKVLTNAIGNSGYDDDAVLAACGISIDKQFTPVEGRVLETPKLKVGNNEDCFPSNGRWNFKTKKLLQPSDIGYWAVVNFSKQCDTSYITRELIRCGMSKGMNIERPFTLLEEEAQMRKFNPVARVEKMFSLLSSKLNGPPKLILCVLPERKNCDIYGPWKRKCLSDVGVVTQCISPLKITDQYLTNVLLKINSKLGGINSLLAIEHSGHLPLIKDTPTMILGMDVSHGSPGRSDIPSTAAVVGSRCWPLISRYRASVRSQSPKVEMIDSLFKPVDKMNDAGILEKKDDGIIRDGVGESQFQQVLDVELNQIIKAYKHIDEVENDDVPKFTVIVAQKNHHTKLFQANALENVPPGTVVDTNIVHPRNYDFYMCAHAGMIGTSRPVHYHVLLDEIGFSPDGLQNLINSLSYVNQRSTAATSIVAPIYYAHHAAAQMRKFMNFDDLSEASPSPDSEGNIPIQELPKLNWNVRDSMFFC*