AlfalfaGEDB | Msa0052770

M. sativa cultivar zhongmu-4 / Msa0052770

KEGG: K09571
GO: GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006457 GO:0006464 GO:0006807 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010286 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0033554 GO:0034605 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0061077 GO:0070370 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564
PFAM: PF00254.31

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0052770	XP_003589050.2	96.207	580	21	1	1	580	1	579	0.0	1125

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0052770	sp\|Q38931\|FKB62_ARATH	53.042	526	237	5	27	546	29	550	0.0	545

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0052770	G7IBB7	96.207	580	21	1	1	580	1	579	0.0	1125

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003640	Msa0052770	0.833019	6.780807e-56	-8.615850e-47
Msa0006040	Msa0052770	0.853146	2.898226e-61	-8.615850e-47
Msa0007440	Msa0052770	0.819229	1.296327e-52	-8.615850e-47
Msa0011170	Msa0052770	0.807406	5.134188e-50	-8.615850e-47
Msa0011960	Msa0052770	0.812845	3.453686e-51	-8.615850e-47
Msa0012040	Msa0052770	0.823070	1.688286e-53	-8.615850e-47
Msa0015610	Msa0052770	0.820075	8.304958e-53	-8.615850e-47
Msa0020300	Msa0052770	0.826179	3.126560e-54	-8.615850e-47
Msa0025730	Msa0052770	0.821452	4.006921e-53	-8.615850e-47
Msa0026710	Msa0052770	0.812687	3.740122e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0052770	MtrunA17_Chr1g0152361	95.767	378	16	0	173	550	4	381	0.0	738
Msa0052770	MtrunA17_Chr1g0152361	32.093	215	121	7	61	258	3	209	4.10e-17	83.6
Msa0052770	MtrunA17_Chr7g0234801	53.333	525	235	6	24	542	20	540	0.0	533
Msa0052770	MtrunA17_Chr8g0377771	51.103	544	255	5	23	561	23	560	0.0	532
Msa0052770	MtrunA17_Chr8g0339141	53.396	530	237	5	24	546	26	552	7.32e-178	514
Msa0052770	MtrunA17_Chr7g0255551	41.406	512	287	6	37	542	19	523	1.14e-132	397
Msa0052770	MtrunA17_Chr7g0255551	31.667	240	141	5	32	258	130	359	4.44e-25	109
Msa0052770	MtrunA17_Chr1g0152351	95.930	172	7	0	1	172	25	196	1.68e-102	308
Msa0052770	MtrunA17_Chr8g0352971	47.181	337	162	7	54	380	14	344	1.88e-90	285
Msa0052770	MtrunA17_Chr8g0352971	35.683	227	129	5	42	258	123	342	2.30e-25	108

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0052770	AT3G25230.1	53.042	526	237	5	27	546	29	550	0.0	545
Msa0052770	AT3G25230.2	53.257	522	234	5	27	542	29	546	0.0	543
Msa0052770	AT5G48570.1	51.698	530	245	7	21	542	30	556	0.0	531
Msa0052770	AT1G58450.1	60.256	156	61	1	387	542	1	155	2.16e-58	192
Msa0052770	AT3G54010.1	30.361	527	324	11	42	541	36	546	1.29e-54	196
Msa0052770	AT3G54010.1	29.583	240	151	6	149	380	32	261	2.70e-16	82.8
Msa0052770	AT3G54010.2	30.917	469	285	10	96	541	4	456	9.03e-50	181
Msa0052770	AT3G21640.1	31.690	284	186	6	267	544	48	329	1.38e-28	117
Msa0052770	AT4G30480.2	33.333	180	88	5	388	564	97	247	6.43e-14	72.8
Msa0052770	AT5G21990.1	34.677	124	75	1	392	515	99	216	1.43e-11	67.8

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Find 161 sgRNAs with CRISPR-Local

Find 424 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGAAATGGGCAATGT+TGG	0.553546	1_2:-7034235	Msa0052770:CDS
AAAATTAAACCGCCATCAGA+AGG	0.538652	1_2:+7034199	None:intergenic
AAAATTATGGAGAAGGGGAA+AGG	0.523585	1_2:-7038419	Msa0052770:CDS
AAATGTTACTGGTGACTCCA+TGG	0.602785	1_2:-7037658	Msa0052770:CDS
AAATTATGGAGAAGGGGAAA+GGG	0.550984	1_2:-7038418	Msa0052770:CDS
AACAATGAAGAAGGGTGAAA+GGG	0.524996	1_2:-7036822	Msa0052770:CDS
AACATGATCGTTGAAGTTGG+GGG	0.695655	1_2:+7039519	None:intergenic
AACATTTATGACAGGCTTGA+AGG	0.460983	1_2:+7037674	None:intergenic
AACATTTCCAAAAGCATAAT+CGG	0.256443	1_2:+7036781	None:intergenic
AACCAAATTGGGTTCTGCTA+GGG	0.534151	1_2:-7039363	Msa0052770:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGAAGAAGCTTCTCAAAAT+CGG	-	chr1_2:7034170-7034189	Msa0052770:exon	30.0%
GCATAAAGATGAAGATGATT+AGG	+	chr1_2:7034244-7034263	None:intergenic	30.0%
AATGTCATGTTAAATGAGCT+TGG	+	chr1_2:7034753-7034772	None:intergenic	30.0%
TTTAACATGACATTAGAGTC+GGG	-	chr1_2:7034759-7034778	Msa0052770:CDS	30.0%
TCATGTACGAATTGTCAAAT+GGG	+	chr1_2:7034826-7034845	None:intergenic	30.0%
TTCATGTACGAATTGTCAAA+TGG	+	chr1_2:7034827-7034846	None:intergenic	30.0%
TTTGACAATTCGTACATGAA+AGG	-	chr1_2:7034827-7034846	Msa0052770:intron	30.0%
AAGGCAGATCATATATACAT+TGG	-	chr1_2:7034846-7034865	Msa0052770:intron	30.0%
TCAAGAAAATTATGGAGAAG+GGG	-	chr1_2:7035302-7035321	Msa0052770:intron	30.0%
GTTGAATTCTATGTGAATGA+TGG	-	chr1_2:7035609-7035628	Msa0052770:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	7034024	7039724	7034024	ID=Msa0052770;Name=Msa0052770
chr1_2	mRNA	7034024	7039724	7034024	ID=Msa0052770-mRNA-1;Parent=Msa0052770;Name=Msa0052770-mRNA-1;_AED=0.06;_eAED=0.06;_QI=26\|1\|1\|1\|1\|1\|13\|162\|581
chr1_2	exon	7034024	7034293	7034024	ID=Msa0052770-mRNA-1:exon:2402;Parent=Msa0052770-mRNA-1
chr1_2	exon	7034693	7034792	7034693	ID=Msa0052770-mRNA-1:exon:2401;Parent=Msa0052770-mRNA-1
chr1_2	exon	7034884	7035011	7034884	ID=Msa0052770-mRNA-1:exon:2400;Parent=Msa0052770-mRNA-1
chr1_2	exon	7035755	7035901	7035755	ID=Msa0052770-mRNA-1:exon:2399;Parent=Msa0052770-mRNA-1
chr1_2	exon	7035999	7036121	7035999	ID=Msa0052770-mRNA-1:exon:2398;Parent=Msa0052770-mRNA-1
chr1_2	exon	7036703	7036878	7036703	ID=Msa0052770-mRNA-1:exon:2397;Parent=Msa0052770-mRNA-1
chr1_2	exon	7037000	7037089	7037000	ID=Msa0052770-mRNA-1:exon:2396;Parent=Msa0052770-mRNA-1
chr1_2	exon	7037592	7037786	7037592	ID=Msa0052770-mRNA-1:exon:2395;Parent=Msa0052770-mRNA-1
chr1_2	exon	7037927	7038007	7037927	ID=Msa0052770-mRNA-1:exon:2394;Parent=Msa0052770-mRNA-1
chr1_2	exon	7038118	7038198	7038118	ID=Msa0052770-mRNA-1:exon:2393;Parent=Msa0052770-mRNA-1
chr1_2	exon	7038384	7038629	7038384	ID=Msa0052770-mRNA-1:exon:2392;Parent=Msa0052770-mRNA-1
chr1_2	exon	7039327	7039413	7039327	ID=Msa0052770-mRNA-1:exon:2391;Parent=Msa0052770-mRNA-1
chr1_2	exon	7039515	7039724	7039515	ID=Msa0052770-mRNA-1:exon:2390;Parent=Msa0052770-mRNA-1
chr1_2	five_prime_UTR	7039699	7039724	7039699	ID=Msa0052770-mRNA-1:five_prime_utr;Parent=Msa0052770-mRNA-1
chr1_2	CDS	7039515	7039698	7039515	ID=Msa0052770-mRNA-1:cds;Parent=Msa0052770-mRNA-1
chr1_2	CDS	7039327	7039413	7039327	ID=Msa0052770-mRNA-1:cds;Parent=Msa0052770-mRNA-1
chr1_2	CDS	7038384	7038629	7038384	ID=Msa0052770-mRNA-1:cds;Parent=Msa0052770-mRNA-1
chr1_2	CDS	7038118	7038198	7038118	ID=Msa0052770-mRNA-1:cds;Parent=Msa0052770-mRNA-1
chr1_2	CDS	7037927	7038007	7037927	ID=Msa0052770-mRNA-1:cds;Parent=Msa0052770-mRNA-1
chr1_2	CDS	7037592	7037786	7037592	ID=Msa0052770-mRNA-1:cds;Parent=Msa0052770-mRNA-1
chr1_2	CDS	7037000	7037089	7037000	ID=Msa0052770-mRNA-1:cds;Parent=Msa0052770-mRNA-1
chr1_2	CDS	7036703	7036878	7036703	ID=Msa0052770-mRNA-1:cds;Parent=Msa0052770-mRNA-1
chr1_2	CDS	7035999	7036121	7035999	ID=Msa0052770-mRNA-1:cds;Parent=Msa0052770-mRNA-1
chr1_2	CDS	7035755	7035901	7035755	ID=Msa0052770-mRNA-1:cds;Parent=Msa0052770-mRNA-1
chr1_2	CDS	7034884	7035011	7034884	ID=Msa0052770-mRNA-1:cds;Parent=Msa0052770-mRNA-1
chr1_2	CDS	7034693	7034792	7034693	ID=Msa0052770-mRNA-1:cds;Parent=Msa0052770-mRNA-1
chr1_2	CDS	7034186	7034293	7034186	ID=Msa0052770-mRNA-1:cds;Parent=Msa0052770-mRNA-1
chr1_2	three_prime_UTR	7034024	7034185	7034024	ID=Msa0052770-mRNA-1:three_prime_utr;Parent=Msa0052770-mRNA-1

Gene Sequence

>Msa0052770

ATGGCAGTGTTATCGGAGATAAAAGAAGATGAACTGGATGAAGAACCAGGCGAAGTCATCGAATCAGCACCACCTCAAAAGCTCGGCGAAGAAAGGCAACTCACTTCCAACTCGCCGATCAAGAAGAAGCTTCTCAAAATCGGACACGGTTGGGAAACCCCCAACTTCAACGATCATGTTACTCTTCATTATGTTGGAACTTTGCTTGATGGAACCAAATTGGGTTCTGCTAGGGATTCTGATTCTCCTGTCACATTTTCTCTTGGACAAGGTGAATTGTATGCTGGATTGGATGATGGAATCGTCACCATGAAGAAAGGAGAGGTGGCATTGTTCACATTACCTTCTGTTGTGTCTGGAAGCATTCCACAAGACTCCAACTCGGTTGTGCAATTTGAGGTGGAACTCGTTTCTTGGATCACGGTGGTGGATGTTTGCAAAGATGGTGGAATTATCAAGAAAATTATGGAGAAGGGGAAAGGGAATGATCGACCCGGTGATCTTGATGAAGTCCTTGTGAAGTATCAGGTGGCACTTGAAGATGGCACTGTTGTTGCAGAAACTCCGGAAGGAGGAGTTGAATTCTATGTGAATGATGGTCATCTTCTTCCTAGATTGCCAAAAGTGATCATGACTATGACAAGGGGCGAGAAAGCTGAATTAATTGTTCAACCTCAGTATGCCTTTGGGGAGAAGGGGAGTGAAGCTGGCAGCGGGTTCCGTTCAATTCCACCAGACTCAATGCTCCATGTTAATATTGAATTGGTGTCCTTCAAGCCTGTCATAAATGTTACTGGTGACTCCATGGTGATTAAGAAGATTATTAAAGAAGGGGAGGGTGCTTTCACAGCCAATGAGGGTGCAAATGTTACGGTCAGATACACAGCTATGCTAGAAGATGGCACTGTATTCGAAAAAAGAGGAATTGATGAAACACAACCCTTGAAATTTGTAACCGATGAGGAACAAGTGATTACTGGTTTAGACCGAGCAGTGGCAACAATGAAGAAGGGTGAAAGGGCCATAATCAGTATACATCCCGATTATGCTTTTGGAAATGTTGAAGTGAAACAAGATCTTGCTATTGTGCCACCAGGCTCAAAAGTAGTGTATGACATTGAAATGGTGGATTTTATTAAGGAGAAAGCACCATGGGAGTTAAATAGTAATGAAAAAATTGAGGTGGCTGGGAGGAAGAAAGAAGAAGGAAATTTATTATTTAAAAGTGGCAAATATCAGCGAGCAGCGAAGAAGTATGATAAGGCTGCTGATTTTGTTAGCAGAGATGGATCTTTAGGGGATGATGAGGAAAAGTTAGCTAAATCGTTGAGAGTTTCATGCTGGTTGAACGGTGCAGCTTGTTGCCTTAAACTGAATGACTTTCCTGGAGCAATCAAACTATGTACTCAGGTGCTTGATGTTGAGTTTGAAAATGTGAAAGCTTTGTATAGACGAGCAAAAGCATATATAGAGACAGGAGACTTTCTTTTAGCAGATGTAGACATCAAGAAAGCTCTTGAGGTGGATCCACAAAACAGGGAGGTAAAGGTACTAAAGATGAAATTGAAGCAACTTCAAGCTGATAGTGACAAAAAAGATGCTAAACTGTATGAAAGTATGTTTGCACCTAAGACAAAGAGATTGAAGGTTGAGAAAGAAGAGGATGGGGTGGTGAAAATGGAAATGGGCAATGTTGGTGACAGCGCAGCTCCTTCTGATGGCGGTTTAATTTTTGATTCCTGTTGA

Protein sequence

>Msa0052770

MAVLSEIKEDELDEEPGEVIESAPPQKLGEERQLTSNSPIKKKLLKIGHGWETPNFNDHVTLHYVGTLLDGTKLGSARDSDSPVTFSLGQGELYAGLDDGIVTMKKGEVALFTLPSVVSGSIPQDSNSVVQFEVELVSWITVVDVCKDGGIIKKIMEKGKGNDRPGDLDEVLVKYQVALEDGTVVAETPEGGVEFYVNDGHLLPRLPKVIMTMTRGEKAELIVQPQYAFGEKGSEAGSGFRSIPPDSMLHVNIELVSFKPVINVTGDSMVIKKIIKEGEGAFTANEGANVTVRYTAMLEDGTVFEKRGIDETQPLKFVTDEEQVITGLDRAVATMKKGERAIISIHPDYAFGNVEVKQDLAIVPPGSKVVYDIEMVDFIKEKAPWELNSNEKIEVAGRKKEEGNLLFKSGKYQRAAKKYDKAADFVSRDGSLGDDEEKLAKSLRVSCWLNGAACCLKLNDFPGAIKLCTQVLDVEFENVKALYRRAKAYIETGDFLLADVDIKKALEVDPQNREVKVLKMKLKQLQADSDKKDAKLYESMFAPKTKRLKVEKEEDGVVKMEMGNVGDSAAPSDGGLIFDSC*