Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1256850 | XP_013457561.1 | 100.000 | 132 | 0 | 0 | 1 | 132 | 132 | 263 | 7.65e-91 | 274 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1256850 | sp|Q944A9|NPS11_ARATH | 84.211 | 133 | 17 | 2 | 1 | 131 | 134 | 264 | 7.65e-66 | 203 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1256850 | A0A072UPG8 | 100.000 | 132 | 0 | 0 | 1 | 132 | 132 | 263 | 3.65e-91 | 274 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001680 | Msa1256850 | 0.819418 | 1.173475e-52 | -8.615850e-47 |
| Msa0007970 | Msa1256850 | 0.800262 | 1.565499e-48 | -8.615850e-47 |
| Msa0024710 | Msa1256850 | 0.815486 | 9.018773e-52 | -8.615850e-47 |
| Msa0027820 | Msa1256850 | 0.802345 | 5.861753e-49 | -8.615850e-47 |
| Msa0032920 | Msa1256850 | -0.810670 | 1.027142e-50 | -8.615850e-47 |
| Msa0052610 | Msa1256850 | 0.832575 | 8.740966e-56 | -8.615850e-47 |
| Msa0057610 | Msa1256850 | 0.805426 | 1.342861e-49 | -8.615850e-47 |
| Msa0067870 | Msa1256850 | 0.810728 | 9.977105e-51 | -8.615850e-47 |
| Msa0081520 | Msa1256850 | 0.828600 | 8.216766e-55 | -8.615850e-47 |
| Msa0093850 | Msa1256850 | 0.845592 | 3.687928e-59 | -8.615850e-47 |
| Msa0098470 | Msa1256850 | 0.825974 | 3.497931e-54 | -8.615850e-47 |
| Msa0626450 | Msa1256850 | 0.807463 | 4.993950e-50 | -8.615850e-47 |
| Msa0626490 | Msa1256850 | 0.813163 | 2.941139e-51 | -8.615850e-47 |
| Msa0638480 | Msa1256850 | 0.803239 | 3.833680e-49 | -8.615850e-47 |
| Msa0652000 | Msa1256850 | 0.800823 | 1.202612e-48 | -8.615850e-47 |
| Msa0664600 | Msa1256850 | 0.810484 | 1.126774e-50 | -8.615850e-47 |
| Msa0716410 | Msa1256850 | 0.801200 | 1.007140e-48 | -8.615850e-47 |
| Msa0780930 | Msa1256850 | 0.812543 | 4.020474e-51 | -8.615850e-47 |
| Msa0832120 | Msa1256850 | 0.805878 | 1.078907e-49 | -8.615850e-47 |
| Msa0833530 | Msa1256850 | 0.802839 | 4.636409e-49 | -8.615850e-47 |
| Msa0152870 | Msa1256850 | 0.823001 | 1.752016e-53 | -8.615850e-47 |
| Msa0166460 | Msa1256850 | 0.815054 | 1.125086e-51 | -8.615850e-47 |
| Msa0173890 | Msa1256850 | 0.834066 | 3.716147e-56 | -8.615850e-47 |
| Msa0192480 | Msa1256850 | 0.805877 | 1.079844e-49 | -8.615850e-47 |
| Msa0207350 | Msa1256850 | 0.805050 | 1.609703e-49 | -8.615850e-47 |
| Msa0221000 | Msa1256850 | 0.810783 | 9.710123e-51 | -8.615850e-47 |
| Msa0221480 | Msa1256850 | 0.803712 | 3.057906e-49 | -8.615850e-47 |
| Msa0223230 | Msa1256850 | 0.814999 | 1.157410e-51 | -8.615850e-47 |
| Msa1256850 | Msa1297970 | 0.913498 | 5.738935e-84 | -8.615850e-47 |
| Msa1256850 | Msa1305280 | 0.829600 | 4.700582e-55 | -8.615850e-47 |
| Msa1256850 | Msa1333890 | 0.805226 | 1.478379e-49 | -8.615850e-47 |
| Msa1256850 | Msa1356830 | 0.816054 | 6.738096e-52 | -8.615850e-47 |
| Msa1256850 | Msa1360980 | 0.824620 | 7.314609e-54 | -8.615850e-47 |
| Msa1256850 | Msa1365760 | 0.809556 | 1.784529e-50 | -8.615850e-47 |
| Msa1256850 | Msa1371520 | 0.801935 | 7.120433e-49 | -8.615850e-47 |
| Msa1256850 | Msa1371910 | 0.824020 | 1.012165e-53 | -8.615850e-47 |
| Msa1256850 | Msa1373820 | 0.822699 | 2.060441e-53 | -8.615850e-47 |
| Msa1256850 | Msa1386710 | 0.808149 | 3.569638e-50 | -8.615850e-47 |
| Msa1256850 | Msa1400610 | -0.800232 | 1.587644e-48 | -8.615850e-47 |
| Msa1256850 | Msa1418240 | 0.804725 | 1.881786e-49 | -8.615850e-47 |
| Msa1256850 | Msa1432500 | 0.801420 | 9.082667e-49 | -8.615850e-47 |
| Msa1256850 | Msa1432920 | 0.801655 | 8.125866e-49 | -8.615850e-47 |
| Msa1256850 | Msa1437940 | 0.826616 | 2.460152e-54 | -8.615850e-47 |
| Msa1256850 | Msa1440310 | 0.828243 | 1.001959e-54 | -8.615850e-47 |
| Msa1256850 | Msa1440960 | 0.800705 | 1.271284e-48 | -8.615850e-47 |
| Msa0378720 | Msa1256850 | 0.827977 | 1.160823e-54 | -8.615850e-47 |
| Msa0386920 | Msa1256850 | 0.809083 | 2.254837e-50 | -8.615850e-47 |
| Msa0428240 | Msa1256850 | 0.806606 | 7.581816e-50 | -8.615850e-47 |
| Msa0435370 | Msa1256850 | 0.811722 | 6.073146e-51 | -8.615850e-47 |
| Msa0435420 | Msa1256850 | 0.823933 | 1.060611e-53 | -8.615850e-47 |
| Msa0435570 | Msa1256850 | 0.800751 | 1.244481e-48 | -8.615850e-47 |
| Msa0436030 | Msa1256850 | 0.803684 | 3.100169e-49 | -8.615850e-47 |
| Msa0474730 | Msa1256850 | 0.819911 | 9.058662e-53 | -8.615850e-47 |
| Msa0479200 | Msa1256850 | 0.822629 | 2.138355e-53 | -8.615850e-47 |
| Msa1073490 | Msa1256850 | 0.801456 | 8.927908e-49 | -8.615850e-47 |
| Msa1076560 | Msa1256850 | 0.830586 | 2.701816e-55 | -8.615850e-47 |
| Msa1079230 | Msa1256850 | 0.845322 | 4.364734e-59 | -8.615850e-47 |
| Msa0277450 | Msa1256850 | 0.809152 | 2.179594e-50 | -8.615850e-47 |
| Msa0292400 | Msa1256850 | 0.800419 | 1.454121e-48 | -8.615850e-47 |
| Msa0307270 | Msa1256850 | 0.818045 | 2.405752e-52 | -8.615850e-47 |
| Msa0326590 | Msa1256850 | 0.806205 | 9.208608e-50 | -8.615850e-47 |
| Msa0341690 | Msa1256850 | 0.840445 | 8.658457e-58 | -8.615850e-47 |
| Msa1124110 | Msa1256850 | 0.823087 | 1.672675e-53 | -8.615850e-47 |
| Msa1168950 | Msa1256850 | 0.827885 | 1.221861e-54 | -8.615850e-47 |
| Msa1169040 | Msa1256850 | 0.838266 | 3.184407e-57 | -8.615850e-47 |
| Msa1206230 | Msa1256850 | 0.905000 | 6.812939e-80 | -8.615850e-47 |
| Msa1219000 | Msa1256850 | 0.801424 | 9.062602e-49 | -8.615850e-47 |
| Msa0485240 | Msa1256850 | 0.805977 | 1.028423e-49 | -8.615850e-47 |
| Msa0518030 | Msa1256850 | 0.819880 | 9.204007e-53 | -8.615850e-47 |
| Msa0573380 | Msa1256850 | 0.814684 | 1.359173e-51 | -8.615850e-47 |
| Msa0937020 | Msa1256850 | 0.801518 | 8.669265e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1256850 | MtrunA17_Chr4g0055321 | 100.000 | 132 | 0 | 0 | 1 | 132 | 132 | 263 | 7.03e-95 | 274 |
| Msa1256850 | MtrunA17_Chr2g0302561 | 71.318 | 129 | 35 | 1 | 1 | 129 | 135 | 261 | 9.19e-56 | 175 |
| Msa1256850 | MtrunA17_Chr4g0069271 | 71.318 | 129 | 35 | 1 | 1 | 129 | 135 | 261 | 1.35e-55 | 174 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1256850 | AT2G35190.1 | 84.211 | 133 | 17 | 2 | 1 | 131 | 134 | 264 | 7.78e-67 | 203 |
| Msa1256850 | AT1G48240.2 | 69.767 | 129 | 37 | 1 | 1 | 129 | 85 | 211 | 1.60e-54 | 170 |
| Msa1256850 | AT3G17440.1 | 67.407 | 135 | 42 | 1 | 1 | 135 | 136 | 268 | 3.01e-54 | 171 |
| Msa1256850 | AT1G48240.1 | 69.767 | 129 | 37 | 1 | 1 | 129 | 136 | 262 | 1.14e-53 | 170 |
| Msa1256850 | AT3G17440.2 | 66.667 | 78 | 26 | 0 | 1 | 78 | 136 | 213 | 3.16e-30 | 108 |
Find 39 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAATGCTCTCTCATGTTTC+AGG | 0.237882 | 8_2:-57094220 | None:intergenic |
| TAAATGAGGGACAATTGTTT+TGG | 0.239837 | 8_2:+57094043 | Msa1256850:three_prime_UTR |
| AAGCCATTGAGAGGGGAAAA+AGG | 0.306993 | 8_2:+57091986 | Msa1256850:CDS |
| GTTCAAGACACGGTAAATAT+TGG | 0.323026 | 8_2:+57092905 | Msa1256850:CDS |
| TATAAAGAAAGCATCTAAAT+TGG | 0.326069 | 8_2:+57093109 | Msa1256850:CDS |
| TGCTACTGACAAGTGTATTA+TGG | 0.366980 | 8_2:+57093251 | Msa1256850:CDS |
| CTTCTGTTGTTCGTGACAAC+AGG | 0.367521 | 8_2:-57093970 | None:intergenic |
| AAGGACATTCGCGACATTCC+AGG | 0.392891 | 8_2:+57093937 | Msa1256850:CDS |
| TGAGACTGCTGCAGCTCTTA+AGG | 0.393912 | 8_2:+57092931 | Msa1256850:CDS |
| TCGCGAATGTCCTTGTTCTC+TGG | 0.411929 | 8_2:-57093928 | None:intergenic |
| TCTAAATTGGTCAAGGAAAT+CGG | 0.417319 | 8_2:+57093122 | Msa1256850:CDS |
| AATGTCAAATGAACAGCTAA+TGG | 0.436817 | 8_2:+57091930 | Msa1256850:exon |
| ATTGTGTTGTTACATAATAG+TGG | 0.440547 | 8_2:+57094184 | Msa1256850:three_prime_UTR |
| AATGAACAGCTAATGGATCA+TGG | 0.468547 | 8_2:+57091937 | Msa1256850:CDS |
| CGAACAACAGAAGACTGCTT+TGG | 0.487369 | 8_2:+57093980 | Msa1256850:CDS |
| AGCTAATGGATCATGGGAAT+CGG | 0.490306 | 8_2:+57091944 | Msa1256850:CDS |
| AATTGCTATCATTATTGTAA+AGG | 0.494738 | 8_2:+57093302 | Msa1256850:CDS |
| ACAACAGGAGGAGCTAATCC+TGG | 0.528610 | 8_2:-57093955 | None:intergenic |
| GAGCAGAGTTGTCAATGAGC+TGG | 0.530134 | 8_2:+57093070 | Msa1256850:CDS |
| TGCTGCAGCTCTTAAGGCAC+AGG | 0.531146 | 8_2:+57092937 | Msa1256850:CDS |
| ATGAACAGCTAATGGATCAT+GGG | 0.537163 | 8_2:+57091938 | Msa1256850:CDS |
| GGTCAAGGAAATCGGTAGGC+AGG | 0.545431 | 8_2:+57093130 | Msa1256850:CDS |
| GTTGTTACATAATAGTGGAT+TGG | 0.547648 | 8_2:+57094189 | Msa1256850:three_prime_UTR |
| GATTGTGATGAACTTAAATG+AGG | 0.550199 | 8_2:+57094029 | Msa1256850:three_prime_UTR |
| GGATCATGGGAATCGGATGA+TGG | 0.561416 | 8_2:+57091951 | Msa1256850:CDS |
| GCTAAACAAACGAATCCTCT+CGG | 0.574048 | 8_2:+57094328 | Msa1256850:three_prime_UTR |
| GAAAGCATCTAAATTGGTCA+AGG | 0.580083 | 8_2:+57093115 | Msa1256850:CDS |
| ACACAGATCAAGCCATTGAG+AGG | 0.592198 | 8_2:+57091977 | Msa1256850:CDS |
| ATTGTGATGAACTTAAATGA+GGG | 0.593340 | 8_2:+57094030 | Msa1256850:three_prime_UTR |
| CACAGATCAAGCCATTGAGA+GGG | 0.597880 | 8_2:+57091978 | Msa1256850:CDS |
| CTGTTGTTCGTGACAACAGG+AGG | 0.605031 | 8_2:-57093967 | None:intergenic |
| GTCAATCTTGTAATATACAG+CGG | 0.611557 | 8_2:+57094373 | Msa1256850:three_prime_UTR |
| TGGTTTGACGGCGATGACAA+TGG | 0.620641 | 8_2:+57094128 | Msa1256850:three_prime_UTR |
| GCTTGTACATCCAGAGAACA+AGG | 0.635136 | 8_2:+57093918 | Msa1256850:intron |
| AATTGGTCAAGGAAATCGGT+AGG | 0.642065 | 8_2:+57093126 | Msa1256850:CDS |
| GCAATAGATTGTTCAAGACA+CGG | 0.645457 | 8_2:+57092895 | Msa1256850:intron |
| CAATTACTCCAATGACGATG+AGG | 0.668385 | 8_2:-57093284 | None:intergenic |
| ACAGATCAAGCCATTGAGAG+GGG | 0.669219 | 8_2:+57091979 | Msa1256850:CDS |
| CAAACAACAAACAATCCGAG+AGG | 0.740636 | 8_2:-57094343 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAATAGTGATATTCA+AGG | - | chr8_2:57092023-57092042 | None:intergenic | 15.0% |
| !! | AAATTGTCATAAGATATTTA+CGG | - | chr8_2:57092321-57092340 | None:intergenic | 15.0% |
| !!! | ATTCTTTAATTTAAATGAGA+AGG | - | chr8_2:57092367-57092386 | None:intergenic | 15.0% |
| !!! | TTTCTATATTTTGTTTTCAA+AGG | + | chr8_2:57092561-57092580 | Msa1256850:intron | 15.0% |
| !!! | TTATTATGTTGAAATTTTCT+CGG | + | chr8_2:57093602-57093621 | Msa1256850:intron | 15.0% |
| !! | AGTTCAAGAAAAATAATTAA+AGG | - | chr8_2:57094261-57094280 | None:intergenic | 15.0% |
| !!! | TTTTTATCTGTTTAATCATA+GGG | + | chr8_2:57094302-57094321 | Msa1256850:three_prime_UTR | 15.0% |
| !! | CAGTTAGTTAAGAAAATATA+TGG | + | chr8_2:57092166-57092185 | Msa1256850:intron | 20.0% |
| !! | TTGTATATGAATAAAAAGCA+AGG | - | chr8_2:57092453-57092472 | None:intergenic | 20.0% |
| !! | AGCTTAAATAAACTTGATAT+TGG | + | chr8_2:57092472-57092491 | Msa1256850:intron | 20.0% |
| !! | TATTTCATGTGGATAAAATT+TGG | + | chr8_2:57092837-57092856 | Msa1256850:intron | 20.0% |
| !!! | AAAATCAAGTTTTTTTTCCT+TGG | - | chr8_2:57093000-57093019 | None:intergenic | 20.0% |
| !!! | AAAAAAACTTGATTTTGACA+TGG | + | chr8_2:57093004-57093023 | Msa1256850:intron | 20.0% |
| !!! | AAAAAACTTGATTTTGACAT+GGG | + | chr8_2:57093005-57093024 | Msa1256850:intron | 20.0% |
| !! | ATGCTTTCTTTATAGAAAAA+TGG | - | chr8_2:57093103-57093122 | None:intergenic | 20.0% |
| !!! | TATAAAGAAAGCATCTAAAT+TGG | + | chr8_2:57093109-57093128 | Msa1256850:CDS | 20.0% |
| !! | AATGATTCATAAAGTAAGTT+AGG | - | chr8_2:57093197-57093216 | None:intergenic | 20.0% |
| !! | AATTGCTATCATTATTGTAA+AGG | + | chr8_2:57093302-57093321 | Msa1256850:CDS | 20.0% |
| !! | TATCATTATTGTAAAGGTAA+GGG | + | chr8_2:57093308-57093327 | Msa1256850:intron | 20.0% |
| !!! | AAATTTGCTTTCTAACTTTT+TGG | + | chr8_2:57093331-57093350 | Msa1256850:intron | 20.0% |
| !!! | AGAAAAATAATTAAAGGTAC+AGG | - | chr8_2:57094255-57094274 | None:intergenic | 20.0% |
| !!! | GTTTTTATCTGTTTAATCAT+AGG | + | chr8_2:57094301-57094320 | Msa1256850:three_prime_UTR | 20.0% |
| !!! | ATCAAGTATTTTTGTAAGAA+CGG | - | chr8_2:57094414-57094433 | None:intergenic | 20.0% |
| !!! | TAGTATTTTATTTGTCCTAG+AGG | + | chr8_2:57092087-57092106 | Msa1256850:intron | 25.0% |
| ! | TTTGACCTTCAAGTAATATA+TGG | + | chr8_2:57092222-57092241 | Msa1256850:intron | 25.0% |
| ! | AAAGACCATATATTACTTGA+AGG | - | chr8_2:57092230-57092249 | None:intergenic | 25.0% |
| ! | TATGAATAAAAAGCAAGGTT+GGG | - | chr8_2:57092448-57092467 | None:intergenic | 25.0% |
| ! | ATATGAATAAAAAGCAAGGT+TGG | - | chr8_2:57092449-57092468 | None:intergenic | 25.0% |
| ! | ATTGGATTATTGCTAAATCA+TGG | + | chr8_2:57092490-57092509 | Msa1256850:intron | 25.0% |
| !! | TGCAATTGTGGTTTAATTTA+AGG | - | chr8_2:57092700-57092719 | None:intergenic | 25.0% |
| ! | GAGAACTGAAAAATACTAAA+TGG | + | chr8_2:57092774-57092793 | Msa1256850:intron | 25.0% |
| ! | CTATCATTATTGTAAAGGTA+AGG | + | chr8_2:57093307-57093326 | Msa1256850:intron | 25.0% |
| ! | ATACATGCATAAACTAAAAG+CGG | - | chr8_2:57093580-57093599 | None:intergenic | 25.0% |
| !!! | TTCTTGAATCTAGTTTTACA+AGG | - | chr8_2:57093798-57093817 | None:intergenic | 25.0% |
| ! | AATCAGTAAAATAAGCAGTT+TGG | - | chr8_2:57093833-57093852 | None:intergenic | 25.0% |
| ! | ATTGTGATGAACTTAAATGA+GGG | + | chr8_2:57094030-57094049 | Msa1256850:three_prime_UTR | 25.0% |
| !! | ATTGTGTTGTTACATAATAG+TGG | + | chr8_2:57094184-57094203 | Msa1256850:three_prime_UTR | 25.0% |
| AATGTCAAATGAACAGCTAA+TGG | + | chr8_2:57091930-57091949 | Msa1256850:exon | 30.0% | |
| TTTCCAAATACATAGACTAC+TGG | + | chr8_2:57092046-57092065 | Msa1256850:intron | 30.0% | |
| AAGTAAGCAAGCATAATATG+TGG | - | chr8_2:57092127-57092146 | None:intergenic | 30.0% | |
| TTAGAGCACAATTTAATTGC+TGG | + | chr8_2:57092192-57092211 | Msa1256850:intron | 30.0% | |
| ! | TTTTTGTCAAACTGTTGTCT+TGG | + | chr8_2:57092252-57092271 | Msa1256850:intron | 30.0% |
| GACGGTACTAAATAAACAAT+AGG | - | chr8_2:57092284-57092303 | None:intergenic | 30.0% | |
| ATCATGGAATCAGTGAAATA+AGG | + | chr8_2:57092506-57092525 | Msa1256850:intron | 30.0% | |
| ! | AATAAGGATGAAAAAGTGTG+AGG | + | chr8_2:57092522-57092541 | Msa1256850:intron | 30.0% |
| ! | CTACTCAATTTAAGACTACA+AGG | - | chr8_2:57092612-57092631 | None:intergenic | 30.0% |
| !! | GGTGTTTGATTTGAATATTC+TGG | + | chr8_2:57092795-57092814 | Msa1256850:intron | 30.0% |
| ATTCTGTTGTCTATTTCATG+TGG | + | chr8_2:57092826-57092845 | Msa1256850:intron | 30.0% | |
| TTGAACAATCTATTGCAGAA+GGG | - | chr8_2:57092891-57092910 | None:intergenic | 30.0% | |
| TCTAAATTGGTCAAGGAAAT+CGG | + | chr8_2:57093122-57093141 | Msa1256850:CDS | 30.0% | |
| CTATACTGAACAAAATGATG+TGG | - | chr8_2:57093172-57093191 | None:intergenic | 30.0% | |
| GTACTTCATGGTGAATTTAT+TGG | + | chr8_2:57093384-57093403 | Msa1256850:intron | 30.0% | |
| ATTTCTACCATAGGTAAACA+TGG | - | chr8_2:57093422-57093441 | None:intergenic | 30.0% | |
| ! | AAACTCTATTCAGTGCTTTT+TGG | + | chr8_2:57093665-57093684 | Msa1256850:intron | 30.0% |
| !! | AACTCTATTCAGTGCTTTTT+GGG | + | chr8_2:57093666-57093685 | Msa1256850:intron | 30.0% |
| GGCGTTTACAAAAAGAAAAT+TGG | - | chr8_2:57093758-57093777 | None:intergenic | 30.0% | |
| GATTGTGATGAACTTAAATG+AGG | + | chr8_2:57094029-57094048 | Msa1256850:three_prime_UTR | 30.0% | |
| ! | TAAATGAGGGACAATTGTTT+TGG | + | chr8_2:57094043-57094062 | Msa1256850:three_prime_UTR | 30.0% |
| ! | AAATGAGGGACAATTGTTTT+GGG | + | chr8_2:57094044-57094063 | Msa1256850:three_prime_UTR | 30.0% |
| !!! | CATATTGATTTTGTGCTCTT+TGG | + | chr8_2:57094108-57094127 | Msa1256850:three_prime_UTR | 30.0% |
| !! | GTTGTTACATAATAGTGGAT+TGG | + | chr8_2:57094189-57094208 | Msa1256850:three_prime_UTR | 30.0% |
| GTCAATCTTGTAATATACAG+CGG | + | chr8_2:57094373-57094392 | Msa1256850:three_prime_UTR | 30.0% | |
| ! | AATGAACAGCTAATGGATCA+TGG | + | chr8_2:57091937-57091956 | Msa1256850:CDS | 35.0% |
| ! | ATGAACAGCTAATGGATCAT+GGG | + | chr8_2:57091938-57091957 | Msa1256850:CDS | 35.0% |
| TCACCAGTAGTCTATGTATT+TGG | - | chr8_2:57092052-57092071 | None:intergenic | 35.0% | |
| AATAAAAAGCAAGGTTGGGA+AGG | - | chr8_2:57092444-57092463 | None:intergenic | 35.0% | |
| TTGTTATACATACACCTCCT+TGG | + | chr8_2:57092637-57092656 | Msa1256850:intron | 35.0% | |
| TGTTATACATACACCTCCTT+GGG | + | chr8_2:57092638-57092657 | Msa1256850:intron | 35.0% | |
| ! | ATATTTTCCACATGTACCCA+AGG | - | chr8_2:57092657-57092676 | None:intergenic | 35.0% |
| ACTGTACATCAAACTTCTAG+AGG | - | chr8_2:57092741-57092760 | None:intergenic | 35.0% | |
| TCTAGAAGTTTGATGTACAG+TGG | + | chr8_2:57092740-57092759 | Msa1256850:intron | 35.0% | |
| CTTGAACAATCTATTGCAGA+AGG | - | chr8_2:57092892-57092911 | None:intergenic | 35.0% | |
| GCAATAGATTGTTCAAGACA+CGG | + | chr8_2:57092895-57092914 | Msa1256850:intron | 35.0% | |
| GTTCAAGACACGGTAAATAT+TGG | + | chr8_2:57092905-57092924 | Msa1256850:CDS | 35.0% | |
| ! | TTTTTCCTTGGACTACTTCT+GGG | - | chr8_2:57092988-57093007 | None:intergenic | 35.0% |
| !!! | TTTTTTCCTTGGACTACTTC+TGG | - | chr8_2:57092989-57093008 | None:intergenic | 35.0% |
| !! | TGATTTTGACATGGGTACTA+AGG | + | chr8_2:57093013-57093032 | Msa1256850:intron | 35.0% |
| !! | GATTTTGACATGGGTACTAA+GGG | + | chr8_2:57093014-57093033 | Msa1256850:intron | 35.0% |
| ! | TAACCTCTTCCTTTTGTAGA+CGG | + | chr8_2:57093040-57093059 | Msa1256850:intron | 35.0% |
| TCATTTGTTCCGTCTACAAA+AGG | - | chr8_2:57093052-57093071 | None:intergenic | 35.0% | |
| !! | GAAAGCATCTAAATTGGTCA+AGG | + | chr8_2:57093115-57093134 | Msa1256850:CDS | 35.0% |
| ! | CTTGCTCGCATTTTTGTAAT+AGG | + | chr8_2:57093227-57093246 | Msa1256850:intron | 35.0% |
| TGCTACTGACAAGTGTATTA+TGG | + | chr8_2:57093251-57093270 | Msa1256850:CDS | 35.0% | |
| !! | TTACTTTTCCTCATCGTCAT+TGG | + | chr8_2:57093276-57093295 | Msa1256850:CDS | 35.0% |
| TGAAGTACAGCAACAATAGA+GGG | - | chr8_2:57093372-57093391 | None:intergenic | 35.0% | |
| ATGAAGTACAGCAACAATAG+AGG | - | chr8_2:57093373-57093392 | None:intergenic | 35.0% | |
| TCTATTGTTGCTGTACTTCA+TGG | + | chr8_2:57093372-57093391 | Msa1256850:intron | 35.0% | |
| GTCAAAGCAATTTCTACCAT+AGG | - | chr8_2:57093431-57093450 | None:intergenic | 35.0% | |
| AAAAGCGGTAAATCTGTGAA+AGG | - | chr8_2:57093565-57093584 | None:intergenic | 35.0% | |
| !!! | CTTTTTGGGTTGTTAACAGA+CGG | + | chr8_2:57093680-57093699 | Msa1256850:intron | 35.0% |
| TACAAGGTAAACTGAAACCA+AGG | - | chr8_2:57093782-57093801 | None:intergenic | 35.0% | |
| !!! | TTTTGTGCTCTTTGGTTTGA+CGG | + | chr8_2:57094116-57094135 | Msa1256850:three_prime_UTR | 35.0% |
| ATAATGCTCTCTCATGTTTC+AGG | - | chr8_2:57094223-57094242 | None:intergenic | 35.0% | |
| ! | CTGAACAATTTTTACTCGAC+AGG | + | chr8_2:57094279-57094298 | Msa1256850:three_prime_UTR | 35.0% |
| ! | AGCTAATGGATCATGGGAAT+CGG | + | chr8_2:57091944-57091963 | Msa1256850:CDS | 40.0% |
| ! | GATGAAAAAGTGTGAGGAAG+TGG | + | chr8_2:57092528-57092547 | Msa1256850:intron | 40.0% |
| ! | TTTTCCTTGGACTACTTCTG+GGG | - | chr8_2:57092987-57093006 | None:intergenic | 40.0% |
| AATTGGTCAAGGAAATCGGT+AGG | + | chr8_2:57093126-57093145 | Msa1256850:CDS | 40.0% | |
| CAATTACTCCAATGACGATG+AGG | - | chr8_2:57093287-57093306 | None:intergenic | 40.0% | |
| TAGGTAAACATGGCACATCT+AGG | - | chr8_2:57093412-57093431 | None:intergenic | 40.0% | |
| AGATGTGCCATGTTTACCTA+TGG | + | chr8_2:57093412-57093431 | Msa1256850:intron | 40.0% | |
| GAAATTGCTTTGACAACACG+TGG | + | chr8_2:57093437-57093456 | Msa1256850:intron | 40.0% | |
| !! | AGTGGAGGAGTTCTTTTTCA+TGG | - | chr8_2:57093514-57093533 | None:intergenic | 40.0% |
| ! | TCACTAGGCATAGCTTTTGA+TGG | + | chr8_2:57093539-57093558 | Msa1256850:intron | 40.0% |
| ! | TCTTTTTGTAAACGCCACCT+TGG | + | chr8_2:57093762-57093781 | Msa1256850:intron | 40.0% |
| AAGGTAAACTGAAACCAAGG+TGG | - | chr8_2:57093779-57093798 | None:intergenic | 40.0% | |
| !!! | TTGTTTTGGGAACACACACA+AGG | + | chr8_2:57094057-57094076 | Msa1256850:three_prime_UTR | 40.0% |
| GCTAAACAAACGAATCCTCT+CGG | + | chr8_2:57094328-57094347 | Msa1256850:three_prime_UTR | 40.0% | |
| CAAACAACAAACAATCCGAG+AGG | - | chr8_2:57094346-57094365 | None:intergenic | 40.0% | |
| ACACAGATCAAGCCATTGAG+AGG | + | chr8_2:57091977-57091996 | Msa1256850:CDS | 45.0% | |
| CACAGATCAAGCCATTGAGA+GGG | + | chr8_2:57091978-57091997 | Msa1256850:CDS | 45.0% | |
| ACAGATCAAGCCATTGAGAG+GGG | + | chr8_2:57091979-57091998 | Msa1256850:CDS | 45.0% | |
| AAGCCATTGAGAGGGGAAAA+AGG | + | chr8_2:57091986-57092005 | Msa1256850:CDS | 45.0% | |
| AGCCATTGAGAGGGGAAAAA+GGG | + | chr8_2:57091987-57092006 | Msa1256850:CDS | 45.0% | |
| ! | AACCCTTTTTCCCCTCTCAA+TGG | - | chr8_2:57091992-57092011 | None:intergenic | 45.0% |
| ATTGAGAGGGGAAAAAGGGT+TGG | + | chr8_2:57091991-57092010 | Msa1256850:intron | 45.0% | |
| GAGCTACAACATTTGCCTCT+AGG | - | chr8_2:57092105-57092124 | None:intergenic | 45.0% | |
| ACGGAAGTAAACTGACGAGA+CGG | - | chr8_2:57092302-57092321 | None:intergenic | 45.0% | |
| GGTTGGGAAGGTAATGTTTC+AGG | - | chr8_2:57092432-57092451 | None:intergenic | 45.0% | |
| ! | TTTTCCACATGTACCCAAGG+AGG | - | chr8_2:57092654-57092673 | None:intergenic | 45.0% |
| ! | AAACTTCTAGAGGAGCAGAG+GGG | - | chr8_2:57092731-57092750 | None:intergenic | 45.0% |
| ! | CAAACTTCTAGAGGAGCAGA+GGG | - | chr8_2:57092732-57092751 | None:intergenic | 45.0% |
| ! | TCAAACTTCTAGAGGAGCAG+AGG | - | chr8_2:57092733-57092752 | None:intergenic | 45.0% |
| GTTCCGTCTACAAAAGGAAG+AGG | - | chr8_2:57093046-57093065 | None:intergenic | 45.0% | |
| CTATGCCTAGTGAAGACTAG+TGG | - | chr8_2:57093532-57093551 | None:intergenic | 45.0% | |
| GTTAACAGACGGTCAAGATC+AGG | + | chr8_2:57093691-57093710 | Msa1256850:intron | 45.0% | |
| GCTTGTACATCCAGAGAACA+AGG | + | chr8_2:57093918-57093937 | Msa1256850:intron | 45.0% | |
| CTTCTGTTGTTCGTGACAAC+AGG | - | chr8_2:57093973-57093992 | None:intergenic | 45.0% | |
| CGAACAACAGAAGACTGCTT+TGG | + | chr8_2:57093980-57093999 | Msa1256850:CDS | 45.0% | |
| GGATCATGGGAATCGGATGA+TGG | + | chr8_2:57091951-57091970 | Msa1256850:CDS | 50.0% | |
| TACACCTCCTTGGGTACATG+TGG | + | chr8_2:57092647-57092666 | Msa1256850:intron | 50.0% | |
| TGAGACTGCTGCAGCTCTTA+AGG | + | chr8_2:57092931-57092950 | Msa1256850:CDS | 50.0% | |
| !! | TTGGACTACTTCTGGGGTGA+AGG | - | chr8_2:57092981-57093000 | None:intergenic | 50.0% |
| TTCACCCCAGAAGTAGTCCA+AGG | + | chr8_2:57092980-57092999 | Msa1256850:intron | 50.0% | |
| GAGCAGAGTTGTCAATGAGC+TGG | + | chr8_2:57093070-57093089 | Msa1256850:CDS | 50.0% | |
| !! | CTCCTCCACTAGTCTTCACT+AGG | + | chr8_2:57093524-57093543 | Msa1256850:intron | 50.0% |
| TGCCTAGTGAAGACTAGTGG+AGG | - | chr8_2:57093529-57093548 | None:intergenic | 50.0% | |
| TCGCGAATGTCCTTGTTCTC+TGG | - | chr8_2:57093931-57093950 | None:intergenic | 50.0% | |
| AAGGACATTCGCGACATTCC+AGG | + | chr8_2:57093937-57093956 | Msa1256850:CDS | 50.0% | |
| ACAACAGGAGGAGCTAATCC+TGG | - | chr8_2:57093958-57093977 | None:intergenic | 50.0% | |
| CTGTTGTTCGTGACAACAGG+AGG | - | chr8_2:57093970-57093989 | None:intergenic | 50.0% | |
| TGGTTTGACGGCGATGACAA+TGG | + | chr8_2:57094128-57094147 | Msa1256850:three_prime_UTR | 50.0% | |
| GGGGACATGGAGTGCAATTG+TGG | - | chr8_2:57092712-57092731 | None:intergenic | 55.0% | |
| TGCTGCAGCTCTTAAGGCAC+AGG | + | chr8_2:57092937-57092956 | Msa1256850:CDS | 55.0% | |
| GGTCAAGGAAATCGGTAGGC+AGG | + | chr8_2:57093130-57093149 | Msa1256850:CDS | 55.0% | |
| CTAGAGGAGCAGAGGGGACA+TGG | - | chr8_2:57092725-57092744 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 57091924 | 57094510 | 57091924 | ID=Msa1256850;Name=Msa1256850 |
| chr8_2 | mRNA | 57091924 | 57094510 | 57091924 | ID=Msa1256850-mRNA-1;Parent=Msa1256850;Name=Msa1256850-mRNA-1;_AED=0.08;_eAED=0.08;_QI=7|1|1|1|1|1|5|487|135 |
| chr8_2 | exon | 57091924 | 57092008 | 57091924 | ID=Msa1256850-mRNA-1:exon:17620;Parent=Msa1256850-mRNA-1 |
| chr8_2 | exon | 57092902 | 57092958 | 57092902 | ID=Msa1256850-mRNA-1:exon:17621;Parent=Msa1256850-mRNA-1 |
| chr8_2 | exon | 57093059 | 57093151 | 57093059 | ID=Msa1256850-mRNA-1:exon:17622;Parent=Msa1256850-mRNA-1 |
| chr8_2 | exon | 57093249 | 57093323 | 57093249 | ID=Msa1256850-mRNA-1:exon:17623;Parent=Msa1256850-mRNA-1 |
| chr8_2 | exon | 57093919 | 57094510 | 57093919 | ID=Msa1256850-mRNA-1:exon:17624;Parent=Msa1256850-mRNA-1 |
| chr8_2 | five_prime_UTR | 57091924 | 57091930 | 57091924 | ID=Msa1256850-mRNA-1:five_prime_utr;Parent=Msa1256850-mRNA-1 |
| chr8_2 | CDS | 57091931 | 57092008 | 57091931 | ID=Msa1256850-mRNA-1:cds;Parent=Msa1256850-mRNA-1 |
| chr8_2 | CDS | 57092902 | 57092958 | 57092902 | ID=Msa1256850-mRNA-1:cds;Parent=Msa1256850-mRNA-1 |
| chr8_2 | CDS | 57093059 | 57093151 | 57093059 | ID=Msa1256850-mRNA-1:cds;Parent=Msa1256850-mRNA-1 |
| chr8_2 | CDS | 57093249 | 57093323 | 57093249 | ID=Msa1256850-mRNA-1:cds;Parent=Msa1256850-mRNA-1 |
| chr8_2 | CDS | 57093919 | 57094023 | 57093919 | ID=Msa1256850-mRNA-1:cds;Parent=Msa1256850-mRNA-1 |
| chr8_2 | three_prime_UTR | 57094024 | 57094510 | 57094024 | ID=Msa1256850-mRNA-1:three_prime_utr;Parent=Msa1256850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
