AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0296820


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0296820 MtrunA17_Chr2g0319591 92.551 443 7 2 1 417 1 443 0.0 835
Msa0296820 MtrunA17_Chr4g0041821 71.719 442 91 6 1 415 1 435 0.0 653
Msa0296820 MtrunA17_Chr1g0183581 49.887 441 165 5 1 415 12 422 2.55e-161 461
Msa0296820 MtrunA17_Chr2g0329651 50.581 172 84 1 148 319 360 530 1.38e-51 184
Msa0296820 MtrunA17_Chr4g0064141 31.387 274 149 6 36 306 337 574 5.28e-33 131
Msa0296820 MtrunA17_Chr3g0127461 33.929 224 120 5 184 406 340 536 7.12e-29 118
Msa0296820 MtrunA17_Chr1g0146661 32.143 224 124 5 184 406 385 581 1.07e-27 115
Msa0296820 MtrunA17_Chr8g0378291 27.329 161 99 4 162 304 222 382 2.44e-12 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0296820 AT4G27100.2 68.100 442 106 5 1 416 1 433 0.0 609
Msa0296820 AT4G27100.1 67.727 440 107 5 1 414 1 431 0.0 604
Msa0296820 AT5G54780.1 66.125 431 108 5 1 404 1 420 0.0 575
Msa0296820 AT2G20440.1 50.000 440 168 6 1 414 7 420 1.37e-160 459
Msa0296820 AT2G20440.2 50.000 440 168 6 1 414 7 420 1.37e-160 459
Msa0296820 AT4G28550.1 49.773 440 169 6 1 414 7 420 1.39e-158 454
Msa0296820 AT4G28550.3 51.852 324 113 3 1 302 7 309 3.69e-123 361
Msa0296820 AT2G20440.3 51.534 326 115 3 1 304 7 311 3.99e-123 361
Msa0296820 AT4G28550.2 51.692 325 114 3 1 303 7 310 2.31e-122 358
Msa0296820 AT2G20440.4 50.303 330 134 5 89 414 1 304 6.63e-119 348
Msa0296820 AT3G59570.1 37.082 329 152 5 136 413 339 663 2.62e-56 197
Msa0296820 AT2G43490.1 53.801 171 78 1 140 310 339 508 2.33e-55 195
Msa0296820 AT2G43490.7 53.801 171 78 1 140 310 339 508 2.33e-55 195
Msa0296820 AT2G43490.3 53.801 171 78 1 140 310 339 508 2.33e-55 195
Msa0296820 AT2G43490.2 53.801 171 78 1 140 310 339 508 2.33e-55 195
Msa0296820 AT2G43490.6 53.801 171 78 1 140 310 335 504 2.37e-55 195
Msa0296820 AT2G43490.8 53.801 171 78 1 140 310 335 504 2.37e-55 195
Msa0296820 AT2G43490.5 53.801 171 78 1 140 310 339 508 2.79e-55 194
Msa0296820 AT2G43490.4 53.801 171 78 1 140 310 339 508 2.94e-55 195
Msa0296820 AT3G59570.2 51.429 175 84 1 136 310 339 512 4.10e-52 186
Msa0296820 AT3G59570.3 51.429 175 84 1 136 310 339 512 5.38e-52 186
Msa0296820 AT5G52580.1 29.630 297 161 7 22 306 322 582 7.85e-33 131
Msa0296820 AT5G52580.3 29.630 297 161 7 22 306 328 588 8.17e-33 131
Msa0296820 AT5G52580.2 30.153 262 144 5 48 306 374 599 2.26e-31 127
Msa0296820 AT5G53570.1 32.287 223 124 4 184 406 338 533 5.36e-29 119
Msa0296820 AT5G53570.2 32.287 223 124 4 184 406 365 560 5.51e-29 119
Msa0296820 AT5G41940.1 33.929 224 120 6 184 406 345 541 2.10e-28 117
Msa0296820 AT5G24390.1 41.463 123 70 1 184 306 317 437 3.50e-27 114
Msa0296820 AT3G49350.1 39.837 123 72 1 184 306 330 450 1.05e-25 109
Msa0296820 AT1G04830.1 29.651 172 98 6 159 311 223 390 2.40e-15 78.2
Msa0296820 AT1G04830.2 29.651 172 98 6 159 311 223 390 3.05e-15 77.8

Find 118 sgRNAs with CRISPR-Local

Find 331 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCTTGTCTGGATTTCTTTC+AGG 0.106976 2_3:+50367317 None:intergenic
AAGAAAACTTGTCAAAATTA+TGG 0.190885 2_3:-50367021 Msa0296820:CDS
ATAAAATACCTATATGTTTA+TGG 0.198183 2_3:+50366310 None:intergenic
TGTTTGGTGCTAGGCTTTCT+TGG 0.220830 2_3:+50364228 None:intergenic
CCTATATGTTTATGGAGTTT+TGG 0.239607 2_3:+50366318 None:intergenic
CGCCAATTGTTTCCTCTTGT+TGG 0.248172 2_3:-50367410 Msa0296820:CDS
CTTCATTATTGTCTCCTATA+AGG 0.248619 2_3:+50364131 None:intergenic
AGGGAGTCCATCCATCAATT+AGG 0.263963 2_3:-50367802 Msa0296820:CDS
GGAGGCTCAACTAAGTAATT+TGG 0.270154 2_3:-50366364 Msa0296820:CDS
CATCAATTAGGGGAGAAGTT+TGG 0.292286 2_3:-50367790 Msa0296820:CDS
ATCAATTAGGGGAGAAGTTT+GGG 0.302400 2_3:-50367789 Msa0296820:CDS
CTGTCAATGTTATACCTTAT+AGG 0.304756 2_3:-50364145 Msa0296820:three_prime_UTR
TGGTTTGCAGAATTGATTAA+AGG 0.313100 2_3:-50364090 Msa0296820:three_prime_UTR
AAACACTAAGTCCAAGAAAA+TGG 0.315609 2_3:-50368115 Msa0296820:CDS
GCATTGTTGTTGAATGTATA+GGG 0.322322 2_3:-50369393 Msa0296820:five_prime_UTR
CAAACTTCTCCCCTAATTGA+TGG 0.323763 2_3:+50367791 None:intergenic
CATCCAAGCCTCGCGCTTCA+TGG 0.324462 2_3:+50365075 None:intergenic
GGGAGTCCATCCATCAATTA+GGG 0.330099 2_3:-50367801 Msa0296820:CDS
ATGATGAAGCAGACGCATTT+TGG 0.333770 2_3:-50366585 Msa0296820:CDS
GATGTACTGGTCGCACTCTT+GGG 0.336065 2_3:-50366389 Msa0296820:CDS
AGTTCCCTCAGGGAATTTAA+TGG 0.338293 2_3:+50364053 None:intergenic
TGCATTGTTGTTGAATGTAT+AGG 0.342965 2_3:-50369394 Msa0296820:five_prime_UTR
AGATGTACTGGTCGCACTCT+TGG 0.345747 2_3:-50366390 Msa0296820:CDS
AGGAAATCTAGATGCCAAAA+AGG 0.346102 2_3:-50364740 Msa0296820:CDS
AAATTCACAAACCTATTTGA+TGG 0.347183 2_3:+50367189 None:intergenic
ATGTTAACTCTCCATCAAAT+AGG 0.350184 2_3:-50367200 Msa0296820:intron
TCATACATCAAGAACAAATA+AGG 0.353993 2_3:+50365278 None:intergenic
AGAAAACTTGTCAAAATTAT+GGG 0.382772 2_3:-50367020 Msa0296820:CDS
TACTTCCTCAAGATAATAAT+AGG 0.382978 2_3:-50367286 Msa0296820:CDS
TTTGTGATTCATTGTACCTA+TGG 0.385679 2_3:-50365985 Msa0296820:CDS
TTTACAGAATCTATACTTGA+AGG 0.394310 2_3:+50367263 None:intergenic
GTTCCCTCAGGGAATTTAAT+GGG 0.404583 2_3:+50364054 None:intergenic
GAATTTAATGGGTGGAAACT+TGG 0.405507 2_3:+50364065 None:intergenic
CCAAAACTCCATAAACATAT+AGG 0.406934 2_3:-50366318 Msa0296820:intron
ATAATCATGGGGTCTTGAAT+TGG 0.410294 2_3:+50367341 None:intergenic
GCAACAAGGAAAACAGATAT+AGG 0.410679 2_3:+50365131 None:intergenic
ATTTACTCAAGAAGGGTATC+TGG 0.414638 2_3:-50368084 Msa0296820:CDS
GACCACTCAATGACATGAAA+TGG 0.415891 2_3:+50363889 None:intergenic
CATCTCAAGATTCAAGATCA+AGG 0.418043 2_3:-50369133 Msa0296820:intron
GAGAGACAAAATATGAGAAA+TGG 0.418641 2_3:-50365179 Msa0296820:CDS
ATCATTACTGCAATCTGGTC+TGG 0.419284 2_3:+50369161 None:intergenic
CATCAAGAAGAATTATCATT+GGG 0.422403 2_3:+50366605 None:intergenic
CATTTGAGATGATTAAATGA+TGG 0.423009 2_3:-50364183 Msa0296820:three_prime_UTR
CAAGAAGGGTATCTGGATAT+AGG 0.425363 2_3:-50368077 Msa0296820:CDS
CTTGTGATGTGGAGAGATCC+AGG 0.427729 2_3:-50369210 Msa0296820:exon
ATATTCTTGCAGTTTATGCT+TGG 0.433846 2_3:-50366997 Msa0296820:CDS
TTTCGTCAAATGTACTCTTC+GGG 0.441710 2_3:+50367744 None:intergenic
CTTGATCTTGAATCTTGAGA+TGG 0.445826 2_3:+50369134 None:intergenic
ACTTGTCAACTCAAAGAGAA+TGG 0.449458 2_3:+50369368 None:intergenic
TCATCAAGAAGAATTATCAT+TGG 0.451073 2_3:+50366604 None:intergenic
GCTTGGATAGATAAAGAAGT+TGG 0.451389 2_3:-50366980 Msa0296820:CDS
TTGACGTGGTACGCACTGAT+AGG 0.451450 2_3:-50367066 Msa0296820:CDS
TTGTGATTCATTGTACCTAT+GGG 0.454384 2_3:-50365984 Msa0296820:CDS
TTGTTTCCTCTTGTTGGAAG+TGG 0.462346 2_3:-50367404 Msa0296820:CDS
CATCATTTAATCATCTCAAA+TGG 0.467433 2_3:+50364184 None:intergenic
ATTTCTTTCAGGCATAATCA+TGG 0.468298 2_3:+50367328 None:intergenic
AGTACAGCTAATCCCTTGTC+TGG 0.469428 2_3:+50367305 None:intergenic
CGAGGAAATTTCAGATGTAC+TGG 0.471593 2_3:-50366402 Msa0296820:CDS
GGAACATCATTACTGCAATC+TGG 0.472237 2_3:+50369156 None:intergenic
CATGATGCATTTACTCAAGA+AGG 0.472341 2_3:-50368092 Msa0296820:CDS
ACTCCATGAAGCGCGAGGCT+TGG 0.472658 2_3:-50365078 Msa0296820:CDS
AAAGAATCAGCTGAAACTCC+TGG 0.480245 2_3:+50369192 None:intergenic
CAATGGATATGTTTGGTGCT+AGG 0.484607 2_3:+50364219 None:intergenic
CAGATATTGAATGACACAAC+AGG 0.486107 2_3:-50364760 Msa0296820:CDS
TGGTCGCACTCTTGGGGTGG+AGG 0.488394 2_3:-50366382 Msa0296820:CDS
GATGGAGAGTTAACATCCAC+TGG 0.490352 2_3:+50367207 None:intergenic
TGGCCATCATCAGTAATTAC+AGG 0.493011 2_3:+50367365 None:intergenic
TTCCAACAAGAGGAAACAAT+TGG 0.498284 2_3:+50367408 None:intergenic
TTTCTTTCAGGCATAATCAT+GGG 0.498518 2_3:+50367329 None:intergenic
TAGGTACAATGAATCACAAA+AGG 0.507991 2_3:+50365988 None:intergenic
TAACATACAACAGTTCCCTC+AGG 0.510849 2_3:+50364042 None:intergenic
TCTTTCAGTTTCTTGTGATG+TGG 0.511895 2_3:-50369221 Msa0296820:exon
CTTGTCAACTCAAAGAGAAT+GGG 0.517137 2_3:+50369369 None:intergenic
ATTTGAGATGATTAAATGAT+GGG 0.519694 2_3:-50364182 Msa0296820:three_prime_UTR
GTAAAAGCTGAGGGCGTCAA+AGG 0.527510 2_3:-50365236 Msa0296820:CDS
TCACCTGTAATTACTGATGA+TGG 0.529934 2_3:-50367368 Msa0296820:CDS
CACAAACACAAGAAGAAACA+AGG 0.539544 2_3:+50369268 None:intergenic
AGGAAAACAGATATAGGAAG+AGG 0.540547 2_3:+50365137 None:intergenic
GAATTATCATTGGGGAGCAT+AGG 0.542492 2_3:+50366614 None:intergenic
TTGATCTTGAATCTTGAGAT+GGG 0.545349 2_3:+50369135 None:intergenic
GTGTATCCATCCAAAAGAGC+AGG 0.551455 2_3:-50363997 Msa0296820:three_prime_UTR
AGTCAATCAAATTTAGAGTG+TGG 0.558511 2_3:-50364110 Msa0296820:three_prime_UTR
TACTGGTCGCACTCTTGGGG+TGG 0.558646 2_3:-50366385 Msa0296820:CDS
GAAGGCCTATTATTATCTTG+AGG 0.560973 2_3:+50367281 None:intergenic
TGGAGAACAGAACATATTGG+TGG 0.562536 2_3:-50366067 Msa0296820:intron
CTTCTCCCCTAATTGATGGA+TGG 0.563411 2_3:+50367795 None:intergenic
TCATGGGGTCTTGAATTGGT+TGG 0.566507 2_3:+50367345 None:intergenic
ATTTAATCATCTCAAATGGA+AGG 0.566778 2_3:+50364188 None:intergenic
TTCTTTCAGGCATAATCATG+GGG 0.568000 2_3:+50367330 None:intergenic
ATGTACTGGTCGCACTCTTG+GGG 0.573792 2_3:-50366388 Msa0296820:CDS
AAAGAAGTTGGATACGGTCA+AGG 0.579690 2_3:-50366968 Msa0296820:intron
TGATTCATTGTACCTATGGG+AGG 0.581982 2_3:-50365981 Msa0296820:intron
ATCAGCTTCTGTAAAAGCTG+AGG 0.587749 2_3:-50365246 Msa0296820:CDS
CTTTCAACACACCAGCAACA+AGG 0.588036 2_3:+50365117 None:intergenic
ATCCATTTCATGTCATTGAG+TGG 0.590110 2_3:-50363891 Msa0296820:three_prime_UTR
AATCGACCACTTCCAACAAG+AGG 0.590144 2_3:+50367398 None:intergenic
ATAGATAAAGAAGTTGGATA+CGG 0.592454 2_3:-50366974 Msa0296820:CDS
CCACCCATTAAATTCCCTGA+GGG 0.594717 2_3:-50364057 Msa0296820:three_prime_UTR
AACATACAACAGTTCCCTCA+GGG 0.598715 2_3:+50364043 None:intergenic
AGGCTTGGATGATGTTGTCA+AGG 0.604218 2_3:-50365063 Msa0296820:intron
TCAGCTTCTGTAAAAGCTGA+GGG 0.607394 2_3:-50365245 Msa0296820:CDS
ATGATGCATTTACTCAAGAA+GGG 0.608798 2_3:-50368091 Msa0296820:CDS
CCTGAAAGAAATCCAGACAA+GGG 0.614978 2_3:-50367317 Msa0296820:CDS
AGAACAGAACATATTGGTGG+AGG 0.618638 2_3:-50366064 Msa0296820:intron
AAGCCAGACACACCTCCCAT+AGG 0.625296 2_3:+50365969 None:intergenic
GCCTGAAAGAAATCCAGACA+AGG 0.626590 2_3:-50367318 Msa0296820:CDS
GGTACGCACTGATAGGACAT+TGG 0.627837 2_3:-50367059 Msa0296820:CDS
CCCTCAGGGAATTTAATGGG+TGG 0.639260 2_3:+50364057 None:intergenic
GCAAAGTCAATACGACAATG+TGG 0.656189 2_3:-50365209 Msa0296820:CDS
CTTTGAGACGAATCTACCGA+GGG 0.661418 2_3:-50368049 Msa0296820:CDS
CAGACAAGAAACTAATCCAG+TGG 0.668020 2_3:-50367223 Msa0296820:CDS
ATCAAGAAGAATTATCATTG+GGG 0.677023 2_3:+50366606 None:intergenic
TCCACCCATTAAATTCCCTG+AGG 0.686227 2_3:-50364058 Msa0296820:three_prime_UTR
GGAGTCCATCCATCAATTAG+GGG 0.691468 2_3:-50367800 Msa0296820:CDS
AAACTACTCCATGAAGCGCG+AGG 0.691668 2_3:-50365083 Msa0296820:CDS
ACTTTGAGACGAATCTACCG+AGG 0.700779 2_3:-50368050 Msa0296820:CDS
ATACGTTTCAGGTCTTGACG+TGG 0.710991 2_3:-50367080 Msa0296820:intron
TTTGAGACGAATCTACCGAG+GGG 0.798701 2_3:-50368048 Msa0296820:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTAAAGTTTTTTTTTATAAA+TGG - chr2_3:50364461-50364480 Msa0296820:intron 10.0%
!!! TTTTTTTTATTCTAATAAGA+AGG - chr2_3:50366418-50366437 Msa0296820:intron 10.0%
!!! TTTTATTCAACAAATTTTAA+TGG + chr2_3:50367123-50367142 None:intergenic 10.0%
!!! AAAGTTTGATTTTTATTTCT+GGG - chr2_3:50364172-50364191 Msa0296820:three_prime_UTR 15.0%
!!! GTTTTTGTTATAATTTTGTT+TGG - chr2_3:50364194-50364213 Msa0296820:three_prime_UTR 15.0%
!! ATAAAATACCTATATGTTTA+TGG + chr2_3:50366959-50366978 None:intergenic 15.0%
!!! AATTTACTGTCTTTTAATTT+TGG - chr2_3:50367179-50367198 Msa0296820:intron 15.0%
!!! ATTTACATTTTATTGAACAA+TGG - chr2_3:50367345-50367364 Msa0296820:CDS 15.0%
!! CATATATATATATAGTACTA+CGG - chr2_3:50367611-50367630 Msa0296820:intron 15.0%
!!! ATATCATAAACTGTTTTAAT+GGG + chr2_3:50367871-50367890 None:intergenic 15.0%
!!! TATATCATAAACTGTTTTAA+TGG + chr2_3:50367872-50367891 None:intergenic 15.0%
!! AATTTAACACATACATAAAA+AGG + chr2_3:50368447-50368466 None:intergenic 15.0%
!! CAGAAATAAAAATCAAACTT+TGG + chr2_3:50364173-50364192 None:intergenic 20.0%
!!! CAAAGTTTGATTTTTATTTC+TGG - chr2_3:50364171-50364190 Msa0296820:three_prime_UTR 20.0%
!!! TTTAAGATAGTGTCTTTTTT+TGG - chr2_3:50364821-50364840 Msa0296820:intron 20.0%
!!! TTTTCTTAATTTTGGAAACT+CGG - chr2_3:50365061-50365080 Msa0296820:intron 20.0%
!! ATAATCATCAATACTTTCAA+GGG + chr2_3:50365352-50365371 None:intergenic 20.0%
!!! CAAGAATTTTTATGTTTATG+TGG - chr2_3:50365402-50365421 Msa0296820:intron 20.0%
!! TTGTTAAAAAATTTCAAACC+AGG - chr2_3:50365444-50365463 Msa0296820:intron 20.0%
!! TGTTAAAAAATTTCAAACCA+GGG - chr2_3:50365445-50365464 Msa0296820:intron 20.0%
!! ACATTGAAACAATTATGAAA+TGG + chr2_3:50365584-50365603 None:intergenic 20.0%
!! TTACCATGTGATTTATATTA+CGG + chr2_3:50366145-50366164 None:intergenic 20.0%
!! AAGAAAACTTGTCAAAATTA+TGG - chr2_3:50366245-50366264 Msa0296820:intron 20.0%
!! AGAAAACTTGTCAAAATTAT+GGG - chr2_3:50366246-50366265 Msa0296820:intron 20.0%
!! AATAAACCAAGTAAACAAAT+TGG - chr2_3:50366448-50366467 Msa0296820:intron 20.0%
!! TAAAAGAGATAATAGAGATA+AGG + chr2_3:50366741-50366760 None:intergenic 20.0%
!! TTTCCATTAATAATTTCTTC+AGG + chr2_3:50367079-50367098 None:intergenic 20.0%
!! CGTAGTACTATATATATATA+TGG + chr2_3:50367613-50367632 None:intergenic 20.0%
!!! TATCATAAACTGTTTTAATG+GGG + chr2_3:50367870-50367889 None:intergenic 20.0%
!!! AAATTTTTAACAGATGATGT+GGG - chr2_3:50367951-50367970 Msa0296820:intron 20.0%
!! TCACAAAAAATATTTGAGAA+AGG - chr2_3:50368571-50368590 Msa0296820:intron 20.0%
!! AAACAAAAAATGTTAACTAG+TGG - chr2_3:50368714-50368733 Msa0296820:intron 20.0%
!! AAAAAATCAATGGATATGTT+TGG + chr2_3:50369057-50369076 None:intergenic 20.0%
!!! ATTTGAGATGATTAAATGAT+GGG - chr2_3:50369084-50369103 Msa0296820:intron 20.0%
!! TAATACAAAAAAGAAAAGAC+AGG - chr2_3:50369344-50369363 Msa0296820:five_prime_UTR 20.0%
! ATTATTGGATTGATGGAAAT+TGG - chr2_3:50364249-50364268 Msa0296820:intron 25.0%
!! AGAAACTTTTGTTCATTTTG+AGG - chr2_3:50364531-50364550 Msa0296820:intron 25.0%
!! GAAACTTTTGTTCATTTTGA+GGG - chr2_3:50364532-50364551 Msa0296820:intron 25.0%
!! AAACTTTTGTTCATTTTGAG+GGG - chr2_3:50364533-50364552 Msa0296820:intron 25.0%
! TTAACACACAATGTTATCAA+CGG + chr2_3:50364713-50364732 None:intergenic 25.0%
! TGATAACATTGTGTGTTAAA+TGG - chr2_3:50364714-50364733 Msa0296820:CDS 25.0%
! GATAACATTGTGTGTTAAAT+GGG - chr2_3:50364715-50364734 Msa0296820:CDS 25.0%
!! ATGCAAATGATTTTGTGTTA+AGG + chr2_3:50364979-50364998 None:intergenic 25.0%
!! ACTTCTTGATTGTTATTACA+TGG - chr2_3:50365116-50365135 Msa0296820:intron 25.0%
! AAATATGATTAAGATCAGAC+AGG + chr2_3:50365318-50365337 None:intergenic 25.0%
! CATAATCATCAATACTTTCA+AGG + chr2_3:50365353-50365372 None:intergenic 25.0%
!!! CTTGAAAGTATTGATGATTA+TGG - chr2_3:50365351-50365370 Msa0296820:intron 25.0%
!!! CAATGTTTTAAAAACTCAAC+CGG - chr2_3:50365598-50365617 Msa0296820:intron 25.0%
!! AGTTCAAGTAATGATCTTTT+AGG + chr2_3:50365781-50365800 None:intergenic 25.0%
!! ACTTTTATGTTTATGTCATC+AGG - chr2_3:50365803-50365822 Msa0296820:intron 25.0%
! TACTTCCTCAAGATAATAAT+AGG - chr2_3:50365980-50365999 Msa0296820:intron 25.0%
! TTTACAGAATCTATACTTGA+AGG + chr2_3:50366006-50366025 None:intergenic 25.0%
! AAATTCACAAACCTATTTGA+TGG + chr2_3:50366080-50366099 None:intergenic 25.0%
! ACGTATTATGTGCATAAAAA+GGG + chr2_3:50366172-50366191 None:intergenic 25.0%
! AACGTATTATGTGCATAAAA+AGG + chr2_3:50366173-50366192 None:intergenic 25.0%
! ATAGATAAAGAAGTTGGATA+CGG - chr2_3:50366292-50366311 Msa0296820:intron 25.0%
! AAAAAAAACTACTACTTGCA+TGG + chr2_3:50366402-50366421 None:intergenic 25.0%
!! TTGTTTCCAATTTGTTTACT+TGG + chr2_3:50366457-50366476 None:intergenic 25.0%
! ATCAAGAAGAATTATCATTG+GGG + chr2_3:50366663-50366682 None:intergenic 25.0%
! CATCAAGAAGAATTATCATT+GGG + chr2_3:50366664-50366683 None:intergenic 25.0%
! TCATCAAGAAGAATTATCAT+TGG + chr2_3:50366665-50366684 None:intergenic 25.0%
! AAGTATGTAATTCAAGTGTT+CGG - chr2_3:50366790-50366809 Msa0296820:intron 25.0%
!! TAGAATCGAATTTTCTAACT+CGG - chr2_3:50367011-50367030 Msa0296820:CDS 25.0%
! ATGCCTGAAGAAATTATTAA+TGG - chr2_3:50367073-50367092 Msa0296820:intron 25.0%
! TTTCTTCAACATAACAAAAG+AGG + chr2_3:50367148-50367167 None:intergenic 25.0%
!!! CTTTTGTTATGTTGAAGAAA+TGG - chr2_3:50367148-50367167 Msa0296820:intron 25.0%
! CTAACACTATCTCATTAATT+CGG + chr2_3:50367430-50367449 None:intergenic 25.0%
!!! ATCATAAACTGTTTTAATGG+GGG + chr2_3:50367869-50367888 None:intergenic 25.0%
!! GAAATTTTTAACAGATGATG+TGG - chr2_3:50367950-50367969 Msa0296820:intron 25.0%
! TCATACATCAAGAACAAATA+AGG + chr2_3:50367991-50368010 None:intergenic 25.0%
! TGAAAAAAACTGTTACATTC+TGG - chr2_3:50368405-50368424 Msa0296820:intron 25.0%
! AGACTTTGCAATAAATGTAT+TGG + chr2_3:50368674-50368693 None:intergenic 25.0%
! TTTATTGCAAAGTCTTAGAT+TGG - chr2_3:50368679-50368698 Msa0296820:intron 25.0%
! AAAATGTTAACTAGTGGTTA+AGG - chr2_3:50368720-50368739 Msa0296820:intron 25.0%
! AATAAACTTTAATTGCTTGC+AGG - chr2_3:50369015-50369034 Msa0296820:intron 25.0%
! AATGGAAGGAAAAAAATCAA+TGG + chr2_3:50369067-50369086 None:intergenic 25.0%
! ATTTAATCATCTCAAATGGA+AGG + chr2_3:50369081-50369100 None:intergenic 25.0%
! CATCATTTAATCATCTCAAA+TGG + chr2_3:50369085-50369104 None:intergenic 25.0%
!! CATTTGAGATGATTAAATGA+TGG - chr2_3:50369083-50369102 Msa0296820:intron 25.0%
! TGCATTGTTGTTGAATGTAT+AGG - chr2_3:50363872-50363891 Msa0296820:three_prime_UTR 30.0%
! GCATTGTTGTTGAATGTATA+GGG - chr2_3:50363873-50363892 Msa0296820:three_prime_UTR 30.0%
!! AGTTGACAAGTTTTTGTTTC+TGG - chr2_3:50363910-50363929 Msa0296820:three_prime_UTR 30.0%
!! GTTGACAAGTTTTTGTTTCT+GGG - chr2_3:50363911-50363930 Msa0296820:three_prime_UTR 30.0%
TTGATCTTGAATCTTGAGAT+GGG + chr2_3:50364134-50364153 None:intergenic 30.0%
! TTGGTGATATAAACTGTTGT+TGG - chr2_3:50364213-50364232 Msa0296820:three_prime_UTR 30.0%
TGGTGATATAAACTGTTGTT+GGG - chr2_3:50364214-50364233 Msa0296820:three_prime_UTR 30.0%
TATAAACTGTTGTTGGGTAT+AGG - chr2_3:50364220-50364239 Msa0296820:exon 30.0%
GAAGTGTATTATTGGATTGA+TGG - chr2_3:50364242-50364261 Msa0296820:intron 30.0%
TAGTACATAACAATGAAGCA+CGG + chr2_3:50364401-50364420 None:intergenic 30.0%
! TTTCAGATAGTTGATATGTG+AGG - chr2_3:50364566-50364585 Msa0296820:intron 30.0%
! TTGAATGTGTTGACAAGTAT+TGG - chr2_3:50364589-50364608 Msa0296820:intron 30.0%
AAACACTAAGTCCAAGAAAA+TGG - chr2_3:50365151-50365170 Msa0296820:CDS 30.0%
ATGATGCATTTACTCAAGAA+GGG - chr2_3:50365175-50365194 Msa0296820:CDS 30.0%
! GAAGTTTGGGAATTTTTACT+TGG - chr2_3:50365490-50365509 Msa0296820:intron 30.0%
! TTAGGTCTAGAATTCAGAAA+TGG + chr2_3:50365763-50365782 None:intergenic 30.0%
TTTCTTTCAGGCATAATCAT+GGG + chr2_3:50365940-50365959 None:intergenic 30.0%
ATTTCTTTCAGGCATAATCA+TGG + chr2_3:50365941-50365960 None:intergenic 30.0%
ATGTTAACTCTCCATCAAAT+AGG - chr2_3:50366066-50366085 Msa0296820:intron 30.0%
TCACCGTAATATAAATCACA+TGG - chr2_3:50366139-50366158 Msa0296820:intron 30.0%
TTATGCACATAATACGTTTC+AGG - chr2_3:50366175-50366194 Msa0296820:intron 30.0%
ATATTCTTGCAGTTTATGCT+TGG - chr2_3:50366269-50366288 Msa0296820:intron 30.0%
!! AGTACTGATCTATTTCAAAG+AGG + chr2_3:50366334-50366353 None:intergenic 30.0%
TTCTCGATATATCAATCTAG+TGG + chr2_3:50366495-50366514 None:intergenic 30.0%
AACAATTCACAATTCTGAAC+AGG - chr2_3:50366620-50366639 Msa0296820:CDS 30.0%
! CCTATATGTTTATGGAGTTT+TGG + chr2_3:50366951-50366970 None:intergenic 30.0%
CCAAAACTCCATAAACATAT+AGG - chr2_3:50366948-50366967 Msa0296820:intron 30.0%
!! TTTTGGAGAACAGAACATAT+TGG - chr2_3:50367196-50367215 Msa0296820:intron 30.0%
TAGGTACAATGAATCACAAA+AGG + chr2_3:50367281-50367300 None:intergenic 30.0%
TTTGTGATTCATTGTACCTA+TGG - chr2_3:50367281-50367300 Msa0296820:CDS 30.0%
TTGTGATTCATTGTACCTAT+GGG - chr2_3:50367282-50367301 Msa0296820:CDS 30.0%
CATATATAGACACATAAGAG+AGG + chr2_3:50367759-50367778 None:intergenic 30.0%
GTAAAACTATCTGTTGAGTA+TGG + chr2_3:50367784-50367803 None:intergenic 30.0%
GAGAGACAAAATATGAGAAA+TGG - chr2_3:50368087-50368106 Msa0296820:CDS 30.0%
! TGAAATTGATGTTCCCTTTT+TGG - chr2_3:50368303-50368322 Msa0296820:intron 30.0%
!! CATAGCTTGTTAACCAAAAA+GGG + chr2_3:50368319-50368338 None:intergenic 30.0%
!! ACATAGCTTGTTAACCAAAA+AGG + chr2_3:50368320-50368339 None:intergenic 30.0%
! AAGTTTTACATCGTACCATA+TGG + chr2_3:50368967-50368986 None:intergenic 30.0%
CTGTCAATGTTATACCTTAT+AGG - chr2_3:50369121-50369140 Msa0296820:intron 30.0%
CTTCATTATTGTCTCCTATA+AGG + chr2_3:50369138-50369157 None:intergenic 30.0%
! AGTCAATCAAATTTAGAGTG+TGG - chr2_3:50369156-50369175 Msa0296820:CDS 30.0%
! TGGTTTGCAGAATTGATTAA+AGG - chr2_3:50369176-50369195 Msa0296820:CDS 30.0%
! ACAATTTTTACCTGCTCTTT+TGG + chr2_3:50369282-50369301 None:intergenic 30.0%
CTTGTCAACTCAAAGAGAAT+GGG + chr2_3:50363900-50363919 None:intergenic 35.0%
ACTTGTCAACTCAAAGAGAA+TGG + chr2_3:50363901-50363920 None:intergenic 35.0%
CACAAACACAAGAAGAAACA+AGG + chr2_3:50364001-50364020 None:intergenic 35.0%
TCTTTCAGTTTCTTGTGATG+TGG - chr2_3:50364045-50364064 Msa0296820:three_prime_UTR 35.0%
CTTGATCTTGAATCTTGAGA+TGG + chr2_3:50364135-50364154 None:intergenic 35.0%
CATCTCAAGATTCAAGATCA+AGG - chr2_3:50364133-50364152 Msa0296820:three_prime_UTR 35.0%
! GGGTATAGGAAGTGTATTAT+TGG - chr2_3:50364234-50364253 Msa0296820:intron 35.0%
!! GAGCTTGTTAAGTTGATAAC+AGG - chr2_3:50364507-50364526 Msa0296820:intron 35.0%
!!! GGATTTTTTGACAATCTCCA+TGG - chr2_3:50364619-50364638 Msa0296820:intron 35.0%
! GTATCCATCATGGTGTTTTA+TGG - chr2_3:50364662-50364681 Msa0296820:intron 35.0%
!! ATTGTGTGTTAAATGGGTTG+TGG - chr2_3:50364721-50364740 Msa0296820:CDS 35.0%
CTTTGCTAAGTTGTCAGTAA+TGG - chr2_3:50364746-50364765 Msa0296820:CDS 35.0%
!!! GTTGTCAGTAATGGTTTTGT+TGG - chr2_3:50364755-50364774 Msa0296820:CDS 35.0%
CTAGACTTTCAATCTCACAA+TGG - chr2_3:50365022-50365041 Msa0296820:intron 35.0%
! TGATTGTTATTACATGGCTC+AGG - chr2_3:50365122-50365141 Msa0296820:intron 35.0%
!!! AATGCATCATGCCATTTTCT+TGG + chr2_3:50365165-50365184 None:intergenic 35.0%
CATGATGCATTTACTCAAGA+AGG - chr2_3:50365174-50365193 Msa0296820:CDS 35.0%
!! ATTTACTCAAGAAGGGTATC+TGG - chr2_3:50365182-50365201 Msa0296820:CDS 35.0%
ATATAAGAGCAAATACCCCT+CGG + chr2_3:50365236-50365255 None:intergenic 35.0%
ATATCTGAATCCTAGCTTGA+TGG - chr2_3:50365288-50365307 Msa0296820:CDS 35.0%
ATCAATTAGGGGAGAAGTTT+GGG - chr2_3:50365477-50365496 Msa0296820:intron 35.0%
TTTCGTCAAATGTACTCTTC+GGG + chr2_3:50365525-50365544 None:intergenic 35.0%
CTTTCGTCAAATGTACTCTT+CGG + chr2_3:50365526-50365545 None:intergenic 35.0%
CAACTATTCGGTTATTTGAG+TGG + chr2_3:50365691-50365710 None:intergenic 35.0%
GTTTAACTGGTTGAACTGTA+TGG - chr2_3:50365727-50365746 Msa0296820:intron 35.0%
! GTCTAGAATTCAGAAATGGT+GGG + chr2_3:50365759-50365778 None:intergenic 35.0%
TTCCAACAAGAGGAAACAAT+TGG + chr2_3:50365861-50365880 None:intergenic 35.0%
TCACCTGTAATTACTGATGA+TGG - chr2_3:50365898-50365917 Msa0296820:intron 35.0%
ATAATCATGGGGTCTTGAAT+TGG + chr2_3:50365928-50365947 None:intergenic 35.0%
TTCTTTCAGGCATAATCATG+GGG + chr2_3:50365939-50365958 None:intergenic 35.0%
GAAGGCCTATTATTATCTTG+AGG + chr2_3:50365988-50366007 None:intergenic 35.0%
! CTTGTGCACTATTTTGTAGT+AGG - chr2_3:50366105-50366124 Msa0296820:intron 35.0%
GCTTGGATAGATAAAGAAGT+TGG - chr2_3:50366286-50366305 Msa0296820:intron 35.0%
ATCACATGTATCAACGTAGT+TGG + chr2_3:50366375-50366394 None:intergenic 35.0%
TTGCAAGGTTGCAAGAAAAA+TGG + chr2_3:50366546-50366565 None:intergenic 35.0%
TGCAACCTTGCAACAAATAA+TGG - chr2_3:50366553-50366572 Msa0296820:intron 35.0%
! ACTTGCCATTATTTGTTGCA+AGG + chr2_3:50366561-50366580 None:intergenic 35.0%
AAGCTTAGAGACATTGCAAA+TGG + chr2_3:50366592-50366611 None:intergenic 35.0%
! TCGAATTTTCTAACTCGGTT+TGG - chr2_3:50367016-50367035 Msa0296820:CDS 35.0%
! CGAATTTTCTAACTCGGTTT+GGG - chr2_3:50367017-50367036 Msa0296820:CDS 35.0%
!! GCGACTATGTATTTGCTTTT+CGG - chr2_3:50367224-50367243 Msa0296820:CDS 35.0%
!! ATTTGCTTTTCGGATGCTTA+TGG - chr2_3:50367234-50367253 Msa0296820:CDS 35.0%
AGAACGCAAATTGCAAACAA+TGG - chr2_3:50367478-50367497 Msa0296820:intron 35.0%
AGGAAAACAGATATAGGAAG+AGG + chr2_3:50368132-50368151 None:intergenic 35.0%
GCAACAAGGAAAACAGATAT+AGG + chr2_3:50368138-50368157 None:intergenic 35.0%
! ATATCTGTTTTCCTTGTTGC+TGG - chr2_3:50368138-50368157 Msa0296820:intron 35.0%
! ATGTTGTCAAGGTTAGTCAT+GGG - chr2_3:50368214-50368233 Msa0296820:intron 35.0%
CAGATATTGAATGACACAAC+AGG - chr2_3:50368506-50368525 Msa0296820:intron 35.0%
AGGAAATCTAGATGCCAAAA+AGG - chr2_3:50368526-50368545 Msa0296820:intron 35.0%
GAGAATACGAAGATTGTACA+AGG + chr2_3:50368619-50368638 None:intergenic 35.0%
CGAAATACAGATCTATGTGA+CGG + chr2_3:50368776-50368795 None:intergenic 35.0%
AAGTTGGCAAAAATGGCATA+TGG + chr2_3:50368832-50368851 None:intergenic 35.0%
TTTCTCAGTAGTTAGCCATA+TGG - chr2_3:50368949-50368968 Msa0296820:intron 35.0%
! GAATTTAATGGGTGGAAACT+TGG + chr2_3:50369204-50369223 None:intergenic 35.0%
! TTTTTACCTGCTCTTTTGGA+TGG + chr2_3:50369278-50369297 None:intergenic 35.0%
ATCCATTTCATGTCATTGAG+TGG - chr2_3:50369375-50369394 Msa0296820:five_prime_UTR 35.0%
AAAGAATCAGCTGAAACTCC+TGG + chr2_3:50364077-50364096 None:intergenic 40.0%
ATCATTACTGCAATCTGGTC+TGG + chr2_3:50364108-50364127 None:intergenic 40.0%
GGAACATCATTACTGCAATC+TGG + chr2_3:50364113-50364132 None:intergenic 40.0%
GGATTGATGGAAATTGGTGT+TGG - chr2_3:50364255-50364274 Msa0296820:intron 40.0%
CCTAAAAGGCTTTCAATCAG+AGG + chr2_3:50364330-50364349 None:intergenic 40.0%
! CCTCTGATTGAAAGCCTTTT+AGG - chr2_3:50364327-50364346 Msa0296820:intron 40.0%
ATCAACACTGCACACCTAAA+AGG + chr2_3:50364344-50364363 None:intergenic 40.0%
GATTGTCAAAAAATCCGCCA+TGG + chr2_3:50364615-50364634 None:intergenic 40.0%
! TCCATCATGGTGTTTTATGG+TGG - chr2_3:50364665-50364684 Msa0296820:intron 40.0%
TCCACCATAAAACACCATGA+TGG + chr2_3:50364669-50364688 None:intergenic 40.0%
ACACACAATGTTATCAACGG+AGG + chr2_3:50364710-50364729 None:intergenic 40.0%
!! CAAGAAGGGTATCTGGATAT+AGG - chr2_3:50365189-50365208 Msa0296820:CDS 40.0%
CAAACTTCTCCCCTAATTGA+TGG + chr2_3:50365478-50365497 None:intergenic 40.0%
CATCAATTAGGGGAGAAGTT+TGG - chr2_3:50365476-50365495 Msa0296820:intron 40.0%
ATCAAATAAGAGAACGCCGA+AGG - chr2_3:50365548-50365567 Msa0296820:intron 40.0%
AAATGGAAGCTGACTACCTT+CGG + chr2_3:50365567-50365586 None:intergenic 40.0%
CATAGTTCAACCACTCAAAC+CGG - chr2_3:50365647-50365666 Msa0296820:intron 40.0%
GTTTGACTGTTGTTCTGTTC+CGG + chr2_3:50365669-50365688 None:intergenic 40.0%
AACCGAATAGTTGACAGCAT+CGG - chr2_3:50365698-50365717 Msa0296820:intron 40.0%
AACCGATGCTGTCAACTATT+CGG + chr2_3:50365703-50365722 None:intergenic 40.0%
ACTGGTTGAACTGTATGGTT+CGG - chr2_3:50365732-50365751 Msa0296820:intron 40.0%
! GGTCTAGAATTCAGAAATGG+TGG + chr2_3:50365760-50365779 None:intergenic 40.0%
TCAGGATGCAATATGCTACA+TGG - chr2_3:50365821-50365840 Msa0296820:intron 40.0%
TTGTTTCCTCTTGTTGGAAG+TGG - chr2_3:50365862-50365881 Msa0296820:intron 40.0%
TGGCCATCATCAGTAATTAC+AGG + chr2_3:50365904-50365923 None:intergenic 40.0%
CCTGAAAGAAATCCAGACAA+GGG - chr2_3:50365949-50365968 Msa0296820:intron 40.0%
CAGACAAGAAACTAATCCAG+TGG - chr2_3:50366043-50366062 Msa0296820:CDS 40.0%
AAAGAAGTTGGATACGGTCA+AGG - chr2_3:50366298-50366317 Msa0296820:intron 40.0%
GAGACATTGCAAATGGTGTT+TGG + chr2_3:50366585-50366604 None:intergenic 40.0%
! GAATTATCATTGGGGAGCAT+AGG + chr2_3:50366655-50366674 None:intergenic 40.0%
! ATGATGAAGCAGACGCATTT+TGG - chr2_3:50366681-50366700 Msa0296820:intron 40.0%
!! GTTCTTGAACTTTTCAAGCG+AGG - chr2_3:50366846-50366865 Msa0296820:intron 40.0%
CGAGGAAATTTCAGATGTAC+TGG - chr2_3:50366864-50366883 Msa0296820:intron 40.0%
GGAGGCTCAACTAAGTAATT+TGG - chr2_3:50366902-50366921 Msa0296820:intron 40.0%
!!! ATTTTCTAACTCGGTTTGGG+TGG - chr2_3:50367020-50367039 Msa0296820:CDS 40.0%
TGGAGAACAGAACATATTGG+TGG - chr2_3:50367199-50367218 Msa0296820:intron 40.0%
AGAACAGAACATATTGGTGG+AGG - chr2_3:50367202-50367221 Msa0296820:CDS 40.0%
TGATTCATTGTACCTATGGG+AGG - chr2_3:50367285-50367304 Msa0296820:CDS 40.0%
GATAGTGTTAGAACACCAAC+TGG - chr2_3:50367439-50367458 Msa0296820:intron 40.0%
! TTTCATTTTCCGCTACCAGT+TGG + chr2_3:50367457-50367476 None:intergenic 40.0%
TAGACACATAAGAGAGGCAA+GGG + chr2_3:50367753-50367772 None:intergenic 40.0%
ATAGACACATAAGAGAGGCA+AGG + chr2_3:50367754-50367773 None:intergenic 40.0%
ATCAGCTTCTGTAAAAGCTG+AGG - chr2_3:50368020-50368039 Msa0296820:intron 40.0%
TCAGCTTCTGTAAAAGCTGA+GGG - chr2_3:50368021-50368040 Msa0296820:intron 40.0%
GCAAAGTCAATACGACAATG+TGG - chr2_3:50368057-50368076 Msa0296820:CDS 40.0%
! GATGTTGTCAAGGTTAGTCA+TGG - chr2_3:50368213-50368232 Msa0296820:intron 40.0%
AATAACACGCAAGATGTCAG+AGG + chr2_3:50368481-50368500 None:intergenic 40.0%
CAGATCTATGTGACGGTAAA+TGG + chr2_3:50368769-50368788 None:intergenic 40.0%
!! CAATGGATATGTTTGGTGCT+AGG + chr2_3:50369050-50369069 None:intergenic 40.0%
GTTCCCTCAGGGAATTTAAT+GGG + chr2_3:50369215-50369234 None:intergenic 40.0%
AGTTCCCTCAGGGAATTTAA+TGG + chr2_3:50369216-50369235 None:intergenic 40.0%
AACATACAACAGTTCCCTCA+GGG + chr2_3:50369226-50369245 None:intergenic 40.0%
TAACATACAACAGTTCCCTC+AGG + chr2_3:50369227-50369246 None:intergenic 40.0%
GACCACTCAATGACATGAAA+TGG + chr2_3:50369380-50369399 None:intergenic 40.0%
TGATGTGTATGTGTCGTGTC+CGG - chr2_3:50364360-50364379 Msa0296820:intron 45.0%
ACGGACACAAACATGAACAC+CGG + chr2_3:50364382-50364401 None:intergenic 45.0%
!! GTGTTGACAAGTATTGGCCA+TGG - chr2_3:50364595-50364614 Msa0296820:intron 45.0%
!! TTGACAAGTATTGGCCATGG+CGG - chr2_3:50364598-50364617 Msa0296820:intron 45.0%
TCTCCATGGCCAATTTGTGA+AGG - chr2_3:50364633-50364652 Msa0296820:intron 45.0%
CATCCTTCACAAATTGGCCA+TGG + chr2_3:50364639-50364658 None:intergenic 45.0%
CATGGCCAATTTGTGAAGGA+TGG - chr2_3:50364637-50364656 Msa0296820:intron 45.0%
TACCGCCATCCTTCACAAAT+TGG + chr2_3:50364645-50364664 None:intergenic 45.0%
ATGTTATCAACGGAGGATCG+CGG + chr2_3:50364703-50364722 None:intergenic 45.0%
!! TTGGCGATGCTACTTTGTTG+AGG - chr2_3:50364774-50364793 Msa0296820:intron 45.0%
!! TGGCGATGCTACTTTGTTGA+GGG - chr2_3:50364775-50364794 Msa0296820:intron 45.0%
TGTTATTACATGGCTCAGGC+TGG - chr2_3:50365126-50365145 Msa0296820:intron 45.0%
!! ACTTTGAGACGAATCTACCG+AGG - chr2_3:50365216-50365235 Msa0296820:CDS 45.0%
!! CTTTGAGACGAATCTACCGA+GGG - chr2_3:50365217-50365236 Msa0296820:CDS 45.0%
! TTTGAGACGAATCTACCGAG+GGG - chr2_3:50365218-50365237 Msa0296820:CDS 45.0%
! GACAGGTTTTCCATCAAGCT+AGG + chr2_3:50365301-50365320 None:intergenic 45.0%
! TAATTGATGGATGGACTCCC+TGG + chr2_3:50365465-50365484 None:intergenic 45.0%
AGGGAGTCCATCCATCAATT+AGG - chr2_3:50365464-50365483 Msa0296820:intron 45.0%
GGGAGTCCATCCATCAATTA+GGG - chr2_3:50365465-50365484 Msa0296820:intron 45.0%
GGAGTCCATCCATCAATTAG+GGG - chr2_3:50365466-50365485 Msa0296820:intron 45.0%
CTTCTCCCCTAATTGATGGA+TGG + chr2_3:50365474-50365493 None:intergenic 45.0%
! GGTCTTGTCAGTTCAATGTC+CGG + chr2_3:50365620-50365639 None:intergenic 45.0%
CATTGAACTGACAAGACCTG+TGG - chr2_3:50365622-50365641 Msa0296820:intron 45.0%
! TTGTTCTGTTCCGGTTTGAG+TGG + chr2_3:50365660-50365679 None:intergenic 45.0%
!! TAGTTGACAGCATCGGTTCA+CGG - chr2_3:50365705-50365724 Msa0296820:intron 45.0%
CGCCAATTGTTTCCTCTTGT+TGG - chr2_3:50365856-50365875 Msa0296820:intron 45.0%
AATCGACCACTTCCAACAAG+AGG + chr2_3:50365871-50365890 None:intergenic 45.0%
TCATGGGGTCTTGAATTGGT+TGG + chr2_3:50365924-50365943 None:intergenic 45.0%
GCCTGAAAGAAATCCAGACA+AGG - chr2_3:50365948-50365967 Msa0296820:intron 45.0%
CCCTTGTCTGGATTTCTTTC+AGG + chr2_3:50365952-50365971 None:intergenic 45.0%
AGTACAGCTAATCCCTTGTC+TGG + chr2_3:50365964-50365983 None:intergenic 45.0%
GATGGAGAGTTAACATCCAC+TGG + chr2_3:50366062-50366081 None:intergenic 45.0%
! ATACGTTTCAGGTCTTGACG+TGG - chr2_3:50366186-50366205 Msa0296820:intron 45.0%
AAGTTGGATACGGTCAAGGT+GGG - chr2_3:50366302-50366321 Msa0296820:intron 45.0%
GTTAGAACACCAACTGGTAG+CGG - chr2_3:50367445-50367464 Msa0296820:intron 45.0%
! GTCGTAGAGGTATGCACAAT+CGG + chr2_3:50367532-50367551 None:intergenic 45.0%
TAGCTGCTCTATAGTCGTAG+AGG + chr2_3:50367545-50367564 None:intergenic 45.0%
AGACACATAAGAGAGGCAAG+GGG + chr2_3:50367752-50367771 None:intergenic 45.0%
CTTTCAACACACCAGCAACA+AGG + chr2_3:50368152-50368171 None:intergenic 45.0%
AGGCTTGGATGATGTTGTCA+AGG - chr2_3:50368203-50368222 Msa0296820:intron 45.0%
! TTGTCAAGGTTAGTCATGGG+AGG - chr2_3:50368217-50368236 Msa0296820:intron 45.0%
!! TGTTTGGTGCTAGGCTTTCT+TGG + chr2_3:50369041-50369060 None:intergenic 45.0%
TCCACCCATTAAATTCCCTG+AGG - chr2_3:50369208-50369227 Msa0296820:exon 45.0%
CCACCCATTAAATTCCCTGA+GGG - chr2_3:50369209-50369228 Msa0296820:exon 45.0%
GTGTATCCATCCAAAAGAGC+AGG - chr2_3:50369269-50369288 Msa0296820:five_prime_UTR 45.0%
!!! TTTTTTATTTTTCTTAATTT+TGG - chr2_3:50365053-50365072 Msa0296820:intron 5.0%
CTTGTGATGTGGAGAGATCC+AGG - chr2_3:50364056-50364075 Msa0296820:three_prime_UTR 50.0%
GGCCAATTTGTGAAGGATGG+CGG - chr2_3:50364640-50364659 Msa0296820:intron 50.0%
! AAGGATGGCGGTATCCATCA+TGG - chr2_3:50364652-50364671 Msa0296820:intron 50.0%
GTGGTTGAACTATGAGCCAC+AGG + chr2_3:50365641-50365660 None:intergenic 50.0%
!! GCATCGGTTCACGGTTTAAC+TGG - chr2_3:50365714-50365733 Msa0296820:intron 50.0%
! TTGACGTGGTACGCACTGAT+AGG - chr2_3:50366200-50366219 Msa0296820:intron 50.0%
! GGTACGCACTGATAGGACAT+TGG - chr2_3:50366207-50366226 Msa0296820:intron 50.0%
GAAGTTGGATACGGTCAAGG+TGG - chr2_3:50366301-50366320 Msa0296820:intron 50.0%
! AGATGTACTGGTCGCACTCT+TGG - chr2_3:50366876-50366895 Msa0296820:intron 50.0%
! GATGTACTGGTCGCACTCTT+GGG - chr2_3:50366877-50366896 Msa0296820:intron 50.0%
! ATGTACTGGTCGCACTCTTG+GGG - chr2_3:50366878-50366897 Msa0296820:intron 50.0%
TCTTAGGCCCGACTGTTTGT+CGG + chr2_3:50367690-50367709 None:intergenic 50.0%
!! GTAAAAGCTGAGGGCGTCAA+AGG - chr2_3:50368030-50368049 Msa0296820:intron 50.0%
AAACTACTCCATGAAGCGCG+AGG - chr2_3:50368183-50368202 Msa0296820:intron 50.0%
CACGCAAGATGTCAGAGGAA+CGG + chr2_3:50368476-50368495 None:intergenic 50.0%
TGCCAAAAAGGCTTGCGTTG+AGG - chr2_3:50368538-50368557 Msa0296820:intron 50.0%
! AGCCTCAACGCAAGCCTTTT+TGG + chr2_3:50368543-50368562 None:intergenic 50.0%
CCCTCAGGGAATTTAATGGG+TGG + chr2_3:50369212-50369231 None:intergenic 50.0%
! GTACCTATGGGAGGTGTGTC+TGG - chr2_3:50367294-50367313 Msa0296820:CDS 55.0%
AAGCCAGACACACCTCCCAT+AGG + chr2_3:50367300-50367319 None:intergenic 55.0%
AATACCCCTGAACCGTACCG+CGG - chr2_3:50367647-50367666 Msa0296820:intron 55.0%
TTAGGCCCGACTGTTTGTCG+GGG + chr2_3:50367688-50367707 None:intergenic 55.0%
CTTAGGCCCGACTGTTTGTC+GGG + chr2_3:50367689-50367708 None:intergenic 55.0%
TGAGCTAGCAAAGCTCCCTC+CGG + chr2_3:50367721-50367740 None:intergenic 55.0%
ACATAAGAGAGGCAAGGGGC+GGG + chr2_3:50367748-50367767 None:intergenic 55.0%
CACATAAGAGAGGCAAGGGG+CGG + chr2_3:50367749-50367768 None:intergenic 55.0%
TACTGGTCGCACTCTTGGGG+TGG - chr2_3:50366881-50366900 Msa0296820:intron 60.0%
ATACCCCTGAACCGTACCGC+GGG - chr2_3:50367648-50367667 Msa0296820:intron 60.0%
TAGGCCCGACTGTTTGTCGG+GGG + chr2_3:50367687-50367706 None:intergenic 60.0%
CAGTCGGGCCTAAGACACCA+AGG - chr2_3:50367695-50367714 Msa0296820:intron 60.0%
CCTAAGACACCAAGGCCGGA+GGG - chr2_3:50367703-50367722 Msa0296820:intron 60.0%
CATAAGAGAGGCAAGGGGCG+GGG + chr2_3:50367747-50367766 None:intergenic 60.0%
ACTCCATGAAGCGCGAGGCT+TGG - chr2_3:50368188-50368207 Msa0296820:intron 60.0%
CATCCAAGCCTCGCGCTTCA+TGG + chr2_3:50368194-50368213 None:intergenic 60.0%
TGGTCGCACTCTTGGGGTGG+AGG - chr2_3:50366884-50366903 Msa0296820:intron 65.0%
TACCCCTGAACCGTACCGCG+GGG - chr2_3:50367649-50367668 Msa0296820:intron 65.0%
ATCCCCCGCGGTACGGTTCA+GGG + chr2_3:50367655-50367674 None:intergenic 65.0%
TATCCCCCGCGGTACGGTTC+AGG + chr2_3:50367656-50367675 None:intergenic 65.0%
GACTGTTTGTCGGGGGAGGG+GGG + chr2_3:50367680-50367699 None:intergenic 65.0%
CGACTGTTTGTCGGGGGAGG+GGG + chr2_3:50367681-50367700 None:intergenic 65.0%
CCGACTGTTTGTCGGGGGAG+GGG + chr2_3:50367682-50367701 None:intergenic 65.0%
CCCCTCCCCCGACAAACAGT+CGG - chr2_3:50367679-50367698 Msa0296820:intron 65.0%
CCCGACTGTTTGTCGGGGGA+GGG + chr2_3:50367683-50367702 None:intergenic 65.0%
CCCTCCCCCGACAAACAGTC+GGG - chr2_3:50367680-50367699 Msa0296820:intron 65.0%
CGGGCCTAAGACACCAAGGC+CGG - chr2_3:50367699-50367718 Msa0296820:intron 65.0%
GCCTAAGACACCAAGGCCGG+AGG - chr2_3:50367702-50367721 Msa0296820:intron 65.0%
!! CCCTCCGGCCTTGGTGTCTT+AGG + chr2_3:50367706-50367725 None:intergenic 65.0%
AGCAAAGCTCCCTCCGGCCT+TGG + chr2_3:50367715-50367734 None:intergenic 65.0%
ACCCCTGAACCGTACCGCGG+GGG - chr2_3:50367650-50367669 Msa0296820:intron 70.0%
TCCCCCGCGGTACGGTTCAG+GGG + chr2_3:50367654-50367673 None:intergenic 70.0%
GGGGGATATCCCCCGCGGTA+CGG + chr2_3:50367662-50367681 None:intergenic 70.0%
GCCCGACTGTTTGTCGGGGG+AGG + chr2_3:50367684-50367703 None:intergenic 70.0%
GGGAGGGGGGATATCCCCCG+CGG + chr2_3:50367667-50367686 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 50363857 50369431 50363857 ID=Msa0296820;Name=Msa0296820
chr2_3 mRNA 50363857 50369431 50363857 ID=Msa0296820-mRNA-1;Parent=Msa0296820;Name=Msa0296820-mRNA-1;_AED=0.06;_eAED=0.06;_QI=205|0.81|0.66|1|0.81|0.66|12|380|417
chr2_3 exon 50363857 50364251 50363857 ID=Msa0296820-mRNA-1:exon:15822;Parent=Msa0296820-mRNA-1
chr2_3 exon 50364696 50364779 50364696 ID=Msa0296820-mRNA-1:exon:15821;Parent=Msa0296820-mRNA-1
chr2_3 exon 50365064 50365116 50365064 ID=Msa0296820-mRNA-1:exon:15820;Parent=Msa0296820-mRNA-1
chr2_3 exon 50365129 50365324 50365129 ID=Msa0296820-mRNA-1:exon:15819;Parent=Msa0296820-mRNA-1
chr2_3 exon 50365982 50366079 50365982 ID=Msa0296820-mRNA-1:exon:15818;Parent=Msa0296820-mRNA-1
chr2_3 exon 50366319 50366424 50366319 ID=Msa0296820-mRNA-1:exon:15817;Parent=Msa0296820-mRNA-1
chr2_3 exon 50366558 50366646 50366558 ID=Msa0296820-mRNA-1:exon:15816;Parent=Msa0296820-mRNA-1
chr2_3 exon 50366969 50367091 50366969 ID=Msa0296820-mRNA-1:exon:15815;Parent=Msa0296820-mRNA-1
chr2_3 exon 50367201 50367437 50367201 ID=Msa0296820-mRNA-1:exon:15814;Parent=Msa0296820-mRNA-1
chr2_3 exon 50367759 50367822 50367759 ID=Msa0296820-mRNA-1:exon:15813;Parent=Msa0296820-mRNA-1
chr2_3 exon 50368049 50368144 50368049 ID=Msa0296820-mRNA-1:exon:15812;Parent=Msa0296820-mRNA-1
chr2_3 exon 50369134 50369431 50369134 ID=Msa0296820-mRNA-1:exon:15811;Parent=Msa0296820-mRNA-1
chr2_3 five_prime_UTR 50369227 50369431 50369227 ID=Msa0296820-mRNA-1:five_prime_utr;Parent=Msa0296820-mRNA-1
chr2_3 CDS 50369134 50369226 50369134 ID=Msa0296820-mRNA-1:cds;Parent=Msa0296820-mRNA-1
chr2_3 CDS 50368049 50368144 50368049 ID=Msa0296820-mRNA-1:cds;Parent=Msa0296820-mRNA-1
chr2_3 CDS 50367759 50367822 50367759 ID=Msa0296820-mRNA-1:cds;Parent=Msa0296820-mRNA-1
chr2_3 CDS 50367201 50367437 50367201 ID=Msa0296820-mRNA-1:cds;Parent=Msa0296820-mRNA-1
chr2_3 CDS 50366969 50367091 50366969 ID=Msa0296820-mRNA-1:cds;Parent=Msa0296820-mRNA-1
chr2_3 CDS 50366558 50366646 50366558 ID=Msa0296820-mRNA-1:cds;Parent=Msa0296820-mRNA-1
chr2_3 CDS 50366319 50366424 50366319 ID=Msa0296820-mRNA-1:cds;Parent=Msa0296820-mRNA-1
chr2_3 CDS 50365982 50366079 50365982 ID=Msa0296820-mRNA-1:cds;Parent=Msa0296820-mRNA-1
chr2_3 CDS 50365129 50365324 50365129 ID=Msa0296820-mRNA-1:cds;Parent=Msa0296820-mRNA-1
chr2_3 CDS 50365064 50365116 50365064 ID=Msa0296820-mRNA-1:cds;Parent=Msa0296820-mRNA-1
chr2_3 CDS 50364696 50364779 50364696 ID=Msa0296820-mRNA-1:cds;Parent=Msa0296820-mRNA-1
chr2_3 CDS 50364237 50364251 50364237 ID=Msa0296820-mRNA-1:cds;Parent=Msa0296820-mRNA-1
chr2_3 three_prime_UTR 50363857 50364236 50363857 ID=Msa0296820-mRNA-1:three_prime_utr;Parent=Msa0296820-mRNA-1
Gene Sequence

>Msa0296820

ATGTGGAGAGATCCAGGAGTTTCAGCTGATTCTTTCTATGAAACCAGACCAGATTGCAGTAATGATGTTCCCATCTCAAGATTCAAGATCAAGGCTGGTAAAACACTAAGTCCAAGAAAATGGCATGATGCATTTACTCAAGAAGGGTATCTGGATATAGGCAAGACTTTGAGACGAATCTACCGAGGGGGAGTCCATCCATCAATTAGGGGAGAAGTTTGGGAATTTTTACTTGGTTGCTATGACCCGAAGAAATGTCGCCAATTGTTTCCTCTTGTTGGAAGTGGTCGATTTATCACATCACCTGTAATTACTGATGATGGCCAACCAATTCAAGACCCCATGATTATGCCTGAAAGAAATCCAGACAAGGGATTAGCTGTACTTCCTCAAGATAATAATAGGCCTTCAAGTATAGATTCTGTAAATAATTTAGAAAATGTGACAGACAAGAAACTAATCCAGTGGATGTTAACTCTCCATCAAATAGGTCTTGACGTGGTACGCACTGATAGGACATTGGTTTTTTATGAGAAACAAGAAAACTTGTCAAAATTATGGGATATTCTTGCAGTTTATGCTTGGATAGATAAAGAAGTTGGATACGGTCAAGGAATGAGTGACCTATGCTCCCCAATGATAATTCTTCTTGATGATGAAGCAGACGCATTTTGGTGCTTTGAGCGTCTGATGCGCAGACTTCGAGGAAATTTCAGATGTACTGGTCGCACTCTTGGGGTGGAGGCTCAACTAAGTAATTTGGCTTCAATTACTCAAGTAGTTGATCCAAAACTCCATAAACATATAGAACATATTGGTGGAGGCGACTATGTATTTGCTTTTCGGATGCTTATGGTTCTGTTTCGTCGAGAATTTTCCTTTTGTGATTCATTGTACCTATGGGAGATGATGTGGGCTCTAGAGTATGATCCTTATTTGTTCTTGATGTATGAAGAAGCTCAATCAGCTTCTGTAAAAGCTGAGGGCGTCAAAGGAAAAGCAAAGTCAATACGACAATGTGGAAAATACGAGAGACAAAATATGAGAAATGGAGCAAAGAATGCTGAATCTCCTCTTCCTATATCTGTTTTCCTTGTTGCTGATAAAAGTACAAAACTACTCCATGAAGCGCGAGGCTTGGATGATGTTGTCAAGATATTGAATGACACAACAGGAAATCTAGATGCCAAAAAGGCTTGCGTTGAGGCTATGAAGCTTCACAAAAAATATTTGAGAAAGGCCAAGAAAGCCTAG

Protein sequence

>Msa0296820

MWRDPGVSADSFYETRPDCSNDVPISRFKIKAGKTLSPRKWHDAFTQEGYLDIGKTLRRIYRGGVHPSIRGEVWEFLLGCYDPKKCRQLFPLVGSGRFITSPVITDDGQPIQDPMIMPERNPDKGLAVLPQDNNRPSSIDSVNNLENVTDKKLIQWMLTLHQIGLDVVRTDRTLVFYEKQENLSKLWDILAVYAWIDKEVGYGQGMSDLCSPMIILLDDEADAFWCFERLMRRLRGNFRCTGRTLGVEAQLSNLASITQVVDPKLHKHIEHIGGGDYVFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPYLFLMYEEAQSASVKAEGVKGKAKSIRQCGKYERQNMRNGAKNAESPLPISVFLVADKSTKLLHEARGLDDVVKILNDTTGNLDAKKACVEAMKLHKKYLRKAKKA*