Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0437340 | XP_039683725.1 | 93.426 | 289 | 19 | 0 | 1 | 289 | 1 | 289 | 0.0 | 564 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0437340 | sp|Q5XLY0|ANR_GINBI | 34.982 | 283 | 175 | 5 | 7 | 289 | 15 | 288 | 9.56e-47 | 163 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0437340 | G7L426 | 93.426 | 289 | 19 | 0 | 1 | 289 | 1 | 289 | 0.0 | 564 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0437340 | Msa1037720 | 0.884114 | 2.527451e-71 | -8.615850e-47 |
| Msa0437340 | Msa1130340 | 0.955210 | 5.118579e-113 | -8.615850e-47 |
| Msa0437340 | Msa1130640 | 0.988347 | 1.159380e-173 | -8.615850e-47 |
| Msa0437340 | Msa1427790 | 0.952759 | 1.210627e-110 | -8.615850e-47 |
| Msa0437340 | Msa1441210 | 0.961299 | 1.533651e-119 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0437340 | MtrunA17_Chr7g0275521 | 93.426 | 289 | 19 | 0 | 1 | 289 | 1 | 289 | 0.0 | 562 |
| Msa0437340 | MtrunA17_Chr2g0281991 | 59.107 | 291 | 114 | 4 | 1 | 289 | 2 | 289 | 4.88e-119 | 345 |
| Msa0437340 | MtrunA17_Chr2g0282001 | 59.107 | 291 | 114 | 4 | 1 | 289 | 1 | 288 | 1.89e-117 | 341 |
| Msa0437340 | MtrunA17_Chr2g0282011 | 58.763 | 291 | 115 | 4 | 1 | 289 | 2 | 289 | 1.36e-109 | 322 |
| Msa0437340 | MtrunA17_Chr7g0245731 | 33.559 | 295 | 171 | 8 | 2 | 292 | 53 | 326 | 8.04e-45 | 156 |
| Msa0437340 | MtrunA17_Chr4g0048961 | 33.793 | 290 | 170 | 8 | 6 | 289 | 13 | 286 | 1.83e-43 | 151 |
| Msa0437340 | MtrunA17_Chr1g0155411 | 33.569 | 283 | 170 | 6 | 7 | 289 | 8 | 272 | 5.49e-43 | 150 |
| Msa0437340 | MtrunA17_Chr4g0042101 | 34.629 | 283 | 167 | 10 | 6 | 281 | 23 | 294 | 6.58e-43 | 150 |
| Msa0437340 | MtrunA17_Chr7g0245741 | 33.677 | 291 | 169 | 7 | 2 | 289 | 3 | 272 | 8.09e-43 | 149 |
| Msa0437340 | MtrunA17_Chr1g0155431 | 32.509 | 283 | 173 | 6 | 7 | 289 | 8 | 272 | 9.35e-42 | 147 |
| Msa0437340 | MtrunA17_Chr7g0245691 | 35.517 | 290 | 169 | 9 | 2 | 289 | 3 | 276 | 1.81e-41 | 146 |
| Msa0437340 | MtrunA17_Chr7g0245671 | 34.386 | 285 | 170 | 8 | 6 | 289 | 7 | 275 | 2.56e-41 | 145 |
| Msa0437340 | MtrunA17_Chr7g0245641 | 35.034 | 294 | 164 | 9 | 2 | 289 | 40 | 312 | 1.46e-40 | 144 |
| Msa0437340 | MtrunA17_Chr7g0245631 | 31.834 | 289 | 177 | 8 | 2 | 289 | 3 | 272 | 6.44e-37 | 134 |
| Msa0437340 | MtrunA17_Chr4g0010991 | 32.517 | 286 | 171 | 8 | 7 | 289 | 8 | 274 | 5.27e-35 | 129 |
| Msa0437340 | MtrunA17_Chr2g0331211 | 31.597 | 288 | 171 | 10 | 6 | 289 | 4 | 269 | 3.37e-31 | 119 |
| Msa0437340 | MtrunA17_Chr3g0077231 | 32.069 | 290 | 174 | 10 | 7 | 296 | 6 | 272 | 2.98e-30 | 116 |
| Msa0437340 | MtrunA17_Chr7g0245711 | 30.952 | 252 | 150 | 7 | 44 | 292 | 8 | 238 | 3.43e-30 | 115 |
| Msa0437340 | MtrunA17_Chr8g0364051 | 31.379 | 290 | 164 | 10 | 7 | 289 | 8 | 269 | 5.58e-30 | 115 |
| Msa0437340 | MtrunA17_Chr3g0077221 | 31.679 | 262 | 157 | 8 | 7 | 267 | 10 | 250 | 1.51e-29 | 114 |
| Msa0437340 | MtrunA17_Chr4g0039321 | 30.435 | 299 | 171 | 11 | 7 | 298 | 9 | 277 | 2.43e-29 | 114 |
| Msa0437340 | MtrunA17_Chr2g0291541 | 31.399 | 293 | 170 | 12 | 7 | 291 | 10 | 279 | 7.49e-29 | 112 |
| Msa0437340 | MtrunA17_Chr3g0106111 | 30.208 | 288 | 171 | 9 | 7 | 289 | 5 | 267 | 8.06e-29 | 112 |
| Msa0437340 | MtrunA17_Chr4g0002661 | 31.119 | 286 | 172 | 10 | 6 | 289 | 12 | 274 | 3.47e-28 | 110 |
| Msa0437340 | MtrunA17_Chr8g0363831 | 32.872 | 289 | 161 | 12 | 7 | 289 | 9 | 270 | 5.77e-28 | 110 |
| Msa0437340 | MtrunA17_Chr4g0039311 | 29.720 | 286 | 175 | 11 | 7 | 289 | 11 | 273 | 1.97e-27 | 108 |
| Msa0437340 | MtrunA17_Chr5g0431311 | 29.577 | 284 | 178 | 9 | 7 | 289 | 5 | 267 | 2.98e-27 | 108 |
| Msa0437340 | MtrunA17_Chr5g0423551 | 28.571 | 287 | 183 | 10 | 4 | 289 | 1 | 266 | 1.99e-25 | 103 |
| Msa0437340 | MtrunA17_Chr2g0333781 | 29.268 | 287 | 174 | 10 | 7 | 290 | 20 | 280 | 3.57e-25 | 103 |
| Msa0437340 | MtrunA17_Chr4g0002961 | 29.412 | 289 | 173 | 10 | 6 | 289 | 12 | 274 | 1.99e-24 | 100 |
| Msa0437340 | MtrunA17_Chr4g0001321 | 27.875 | 287 | 173 | 11 | 7 | 289 | 17 | 273 | 7.78e-24 | 99.4 |
| Msa0437340 | MtrunA17_Chr5g0411071 | 22.826 | 276 | 179 | 9 | 7 | 281 | 12 | 254 | 5.30e-12 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0437340 | AT4G27250.1 | 34.737 | 285 | 167 | 6 | 8 | 284 | 14 | 287 | 2.18e-47 | 162 |
| Msa0437340 | AT4G27250.2 | 34.386 | 285 | 158 | 7 | 8 | 284 | 14 | 277 | 1.28e-45 | 157 |
| Msa0437340 | AT1G61720.1 | 33.333 | 285 | 178 | 7 | 6 | 289 | 12 | 285 | 1.55e-39 | 141 |
| Msa0437340 | AT1G09510.1 | 33.569 | 283 | 168 | 6 | 7 | 289 | 8 | 270 | 1.91e-38 | 138 |
| Msa0437340 | AT1G09500.3 | 34.035 | 285 | 165 | 9 | 7 | 289 | 8 | 271 | 3.46e-38 | 136 |
| Msa0437340 | AT1G09500.1 | 34.035 | 285 | 165 | 9 | 7 | 289 | 8 | 271 | 1.34e-37 | 136 |
| Msa0437340 | AT5G42800.1 | 30.742 | 283 | 178 | 6 | 7 | 289 | 8 | 272 | 2.31e-36 | 134 |
| Msa0437340 | AT2G45400.2 | 32.168 | 286 | 177 | 7 | 7 | 289 | 40 | 311 | 1.29e-35 | 131 |
| Msa0437340 | AT1G09480.2 | 32.971 | 276 | 165 | 7 | 7 | 282 | 8 | 263 | 1.49e-35 | 130 |
| Msa0437340 | AT2G45400.1 | 31.757 | 296 | 184 | 8 | 7 | 299 | 40 | 320 | 1.72e-35 | 131 |
| Msa0437340 | AT1G09490.1 | 32.168 | 286 | 168 | 8 | 7 | 289 | 8 | 270 | 1.89e-35 | 130 |
| Msa0437340 | AT1G09480.1 | 32.971 | 276 | 165 | 7 | 7 | 282 | 55 | 310 | 4.42e-35 | 130 |
| Msa0437340 | AT4G35420.1 | 30.137 | 292 | 177 | 10 | 2 | 289 | 3 | 271 | 6.57e-35 | 129 |
| Msa0437340 | AT1G66800.1 | 34.532 | 278 | 150 | 11 | 7 | 280 | 8 | 257 | 2.01e-34 | 127 |
| Msa0437340 | AT5G19440.1 | 33.101 | 287 | 164 | 9 | 7 | 289 | 10 | 272 | 1.81e-33 | 125 |
| Msa0437340 | AT1G51410.1 | 31.802 | 283 | 173 | 7 | 7 | 289 | 9 | 271 | 8.39e-31 | 118 |
| Msa0437340 | AT2G45400.4 | 33.945 | 218 | 137 | 4 | 7 | 222 | 40 | 252 | 1.71e-27 | 107 |
| Msa0437340 | AT5G58490.1 | 29.577 | 284 | 178 | 9 | 7 | 289 | 9 | 271 | 2.75e-26 | 106 |
| Msa0437340 | AT1G68540.1 | 30.137 | 292 | 174 | 10 | 4 | 289 | 1 | 268 | 5.28e-26 | 105 |
| Msa0437340 | AT2G02400.1 | 28.772 | 285 | 177 | 10 | 7 | 289 | 6 | 266 | 3.67e-25 | 102 |
| Msa0437340 | AT2G33590.1 | 30.405 | 296 | 162 | 11 | 6 | 289 | 8 | 271 | 4.22e-25 | 102 |
| Msa0437340 | AT1G15950.6 | 30.175 | 285 | 169 | 10 | 7 | 289 | 13 | 269 | 9.08e-25 | 100 |
| Msa0437340 | AT1G15950.5 | 30.175 | 285 | 169 | 10 | 7 | 289 | 13 | 269 | 9.81e-25 | 101 |
| Msa0437340 | AT1G15950.4 | 30.175 | 285 | 169 | 10 | 7 | 289 | 13 | 269 | 1.46e-24 | 100 |
| Msa0437340 | AT1G80820.2 | 29.474 | 285 | 171 | 9 | 7 | 289 | 8 | 264 | 2.08e-24 | 100 |
| Msa0437340 | AT1G76470.1 | 30.375 | 293 | 178 | 11 | 1 | 289 | 1 | 271 | 2.78e-24 | 100 |
| Msa0437340 | AT1G15950.2 | 30.175 | 285 | 169 | 10 | 7 | 289 | 13 | 269 | 3.67e-24 | 100 |
| Msa0437340 | AT1G15950.3 | 30.175 | 285 | 169 | 10 | 7 | 289 | 13 | 269 | 3.96e-24 | 100 |
| Msa0437340 | AT1G15950.1 | 30.175 | 285 | 169 | 10 | 7 | 289 | 13 | 269 | 3.96e-24 | 100 |
| Msa0437340 | AT1G80820.1 | 29.861 | 288 | 166 | 11 | 7 | 289 | 8 | 264 | 7.43e-24 | 99.8 |
| Msa0437340 | AT2G45400.3 | 29.078 | 282 | 178 | 9 | 19 | 299 | 3 | 263 | 7.48e-24 | 99.4 |
| Msa0437340 | AT1G25460.1 | 29.010 | 293 | 178 | 10 | 4 | 291 | 1 | 268 | 3.97e-23 | 97.4 |
| Msa0437340 | AT2G33600.1 | 30.796 | 289 | 154 | 11 | 6 | 281 | 8 | 263 | 8.33e-22 | 94.0 |
| Msa0437340 | AT1G09500.2 | 30.315 | 254 | 152 | 10 | 39 | 289 | 6 | 237 | 6.45e-21 | 90.9 |
| Msa0437340 | AT1G09490.2 | 27.165 | 254 | 159 | 8 | 39 | 289 | 9 | 239 | 1.08e-18 | 84.7 |
| Msa0437340 | AT4G33360.2 | 24.739 | 287 | 169 | 11 | 6 | 286 | 14 | 259 | 9.10e-14 | 70.9 |
| Msa0437340 | AT4G33360.3 | 24.739 | 287 | 169 | 11 | 6 | 286 | 2 | 247 | 1.03e-13 | 70.9 |
| Msa0437340 | AT4G33360.1 | 24.739 | 287 | 169 | 11 | 6 | 286 | 14 | 259 | 1.09e-13 | 70.9 |
| Msa0437340 | AT2G23910.3 | 22.464 | 276 | 184 | 10 | 8 | 281 | 11 | 258 | 5.62e-13 | 68.2 |
| Msa0437340 | AT2G23910.2 | 22.464 | 276 | 184 | 10 | 8 | 281 | 11 | 258 | 7.20e-13 | 67.8 |
| Msa0437340 | AT2G23910.1 | 22.464 | 276 | 184 | 10 | 8 | 281 | 11 | 258 | 7.99e-13 | 68.2 |
| Msa0437340 | AT4G30470.1 | 20.714 | 280 | 183 | 8 | 8 | 281 | 11 | 257 | 7.85e-11 | 62.4 |
Find 64 sgRNAs with CRISPR-Local
Find 238 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGACTTTGAGGCTGCAATTA+AGG | 0.212022 | 3_2:-91544214 | Msa0437340:CDS |
| GTACCATGATGCTTATCTTA+AGG | 0.339878 | 3_2:-91543358 | Msa0437340:intron |
| ATTACTGAAGCATCGCTTGC+TGG | 0.342941 | 3_2:-91543546 | Msa0437340:CDS |
| GACTTTGAGGCTGCAATTAA+GGG | 0.352832 | 3_2:-91544213 | Msa0437340:CDS |
| GTATGCGTCACAGGTGCTTC+TGG | 0.352861 | 3_2:-91544511 | Msa0437340:CDS |
| TTACAACTCAATTGACTTTG+AGG | 0.381158 | 3_2:-91544226 | Msa0437340:CDS |
| GACTGGTTTCAATGATATAA+TGG | 0.390602 | 3_2:-91543424 | Msa0437340:CDS |
| TAACCTGAGATGCGGGTTCA+TGG | 0.394734 | 3_2:+91544154 | None:intergenic |
| CTTTACAGAGGATGAGTCTA+AGG | 0.400084 | 3_2:-91544310 | Msa0437340:intron |
| TCCACAATCACAAGACAAAC+TGG | 0.405298 | 3_2:-91544268 | Msa0437340:CDS |
| CCAGTCCCATCATCTTTCAT+TGG | 0.410585 | 3_2:+91543441 | None:intergenic |
| AGTCTCCTATGTGGGGTTGT+AGG | 0.417874 | 3_2:-91543048 | Msa0437340:CDS |
| ATATAATGGATGAAACTTGC+TGG | 0.423061 | 3_2:-91543410 | Msa0437340:CDS |
| ATTTGAATACTGAGATGAAC+TGG | 0.428593 | 3_2:+91542769 | None:intergenic |
| GATCCATGAACCCGCATCTC+AGG | 0.456989 | 3_2:-91544157 | Msa0437340:intron |
| GCTTCTCCAATGAAAGATGA+TGG | 0.461395 | 3_2:-91543447 | Msa0437340:CDS |
| CAATGAAAATGGTGGAGGGT+TGG | 0.467224 | 3_2:-91543079 | Msa0437340:CDS |
| ATGTGTAAGGTATGCGTCAC+AGG | 0.467565 | 3_2:-91544520 | Msa0437340:CDS |
| AGCTGTGGGAACAATGAAAA+TGG | 0.468232 | 3_2:-91543090 | Msa0437340:CDS |
| TGCAAATGGACGCAAATCAC+TGG | 0.474718 | 3_2:-91542959 | Msa0437340:CDS |
| TGAAAATGGTGGAGGGTTGG+AGG | 0.475120 | 3_2:-91543076 | Msa0437340:CDS |
| CATATCACAGAAAATGCAAA+TGG | 0.475143 | 3_2:-91542973 | Msa0437340:CDS |
| AGGTGGTAAGTCTCCTATGT+GGG | 0.493459 | 3_2:-91543056 | Msa0437340:CDS |
| ACCAGTTTGTCTTGTGATTG+TGG | 0.493902 | 3_2:+91544267 | None:intergenic |
| GAAAGTACTTCATCAATCAA+TGG | 0.516637 | 3_2:-91542859 | Msa0437340:CDS |
| TTACTGAAGCATCGCTTGCT+GGG | 0.524780 | 3_2:-91543545 | Msa0437340:CDS |
| AGATGCGGGTTCATGGATCA+AGG | 0.529187 | 3_2:+91544161 | None:intergenic |
| GATACAAATTGCAACGCTAC+CGG | 0.530650 | 3_2:+91542999 | None:intergenic |
| GGTGATGGAAGCAATGTGTA+AGG | 0.539971 | 3_2:-91544533 | Msa0437340:exon |
| TATAATTTAACCTGAGATGC+GGG | 0.540168 | 3_2:+91544147 | None:intergenic |
| ATATGCTAAAGAATCGTTGA+GGG | 0.549055 | 3_2:+91543383 | None:intergenic |
| AAATGGTGGAGGGTTGGAGG+TGG | 0.552531 | 3_2:-91543073 | Msa0437340:CDS |
| TGCAACGCTACCGGGTGTGA+AGG | 0.555436 | 3_2:+91543008 | None:intergenic |
| GAGGTGGTAAGTCTCCTATG+TGG | 0.557624 | 3_2:-91543057 | Msa0437340:CDS |
| ATACAAATTGCAACGCTACC+GGG | 0.561526 | 3_2:+91543000 | None:intergenic |
| CTCCTATGTGGGGTTGTAGG+AGG | 0.562515 | 3_2:-91543045 | Msa0437340:CDS |
| AGAAGCAGATACAACAGATC+CGG | 0.565206 | 3_2:+91543464 | None:intergenic |
| CTTCTCCAATGAAAGATGAT+GGG | 0.569500 | 3_2:-91543446 | Msa0437340:CDS |
| GCTATGTATTGTAAGAGAGC+GGG | 0.575478 | 3_2:-91543510 | Msa0437340:CDS |
| TGAAGCTCATATATTCTGCA+TGG | 0.578726 | 3_2:-91542881 | Msa0437340:CDS |
| AGGAATATATGTTGAGCTGT+GGG | 0.579788 | 3_2:-91543104 | Msa0437340:CDS |
| GGGTTCATGGATCAAGGGTG+TGG | 0.581982 | 3_2:+91544167 | None:intergenic |
| GAGGAATATATGTTGAGCTG+TGG | 0.584405 | 3_2:-91543105 | Msa0437340:CDS |
| ACATCATCAACATGTACAAG+AGG | 0.587208 | 3_2:+91542907 | None:intergenic |
| TCAAGTCTCTGAGAGTTGCA+TGG | 0.594926 | 3_2:+91544437 | None:intergenic |
| GGGAACAATGAAAATGGTGG+AGG | 0.596591 | 3_2:-91543084 | Msa0437340:CDS |
| ATATAATTTAACCTGAGATG+CGG | 0.598236 | 3_2:+91544146 | None:intergenic |
| AATATGCTAAAGAATCGTTG+AGG | 0.599579 | 3_2:+91543382 | None:intergenic |
| TGCTATGTATTGTAAGAGAG+CGG | 0.604433 | 3_2:-91543511 | Msa0437340:CDS |
| CCAATGAAAGATGATGGGAC+TGG | 0.605272 | 3_2:-91543441 | Msa0437340:CDS |
| GTATTGTAAGAGAGCGGGAA+CGG | 0.611184 | 3_2:-91543505 | Msa0437340:CDS |
| GACCAGAAAAGGGAAGGTGA+TGG | 0.618651 | 3_2:-91544548 | None:intergenic |
| TTACCTTAAGATAAGCATCA+TGG | 0.622737 | 3_2:+91543355 | None:intergenic |
| GGTGGTAAGTCTCCTATGTG+GGG | 0.640603 | 3_2:-91543055 | Msa0437340:CDS |
| TACAGAGGATGAGTCTAAGG+TGG | 0.642409 | 3_2:-91544307 | Msa0437340:intron |
| GATGCGGGTTCATGGATCAA+GGG | 0.646418 | 3_2:+91544162 | None:intergenic |
| ACTCTTCAATCCTTCACACC+CGG | 0.652288 | 3_2:-91543018 | Msa0437340:CDS |
| GGAACAATGAAAATGGTGGA+GGG | 0.652681 | 3_2:-91543083 | Msa0437340:CDS |
| GTACTTCATCAATCAATGGA+CGG | 0.654655 | 3_2:-91542855 | Msa0437340:CDS |
| TTATTCAAAGACAGTGACAG+AGG | 0.655380 | 3_2:-91543124 | Msa0437340:CDS |
| TATGCTAAAGAATCGTTGAG+GGG | 0.679306 | 3_2:+91543384 | None:intergenic |
| CACCTCCTACAACCCCACAT+AGG | 0.680826 | 3_2:+91543043 | None:intergenic |
| GTGAAGCGTCTCATTTACAC+CGG | 0.695408 | 3_2:-91543483 | Msa0437340:CDS |
| TGTGGGAACAATGAAAATGG+TGG | 0.725840 | 3_2:-91543087 | Msa0437340:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATACAAAAAATCTATCA+TGG | - | chr3_2:91543364-91543383 | Msa0437340:CDS | 15.0% |
| !!! | TAAGAATAATTGATTTTGTA+GGG | - | chr3_2:91543554-91543573 | Msa0437340:CDS | 15.0% |
| !!! | GTATTTGAATTTTATTGTAA+TGG | - | chr3_2:91544081-91544100 | Msa0437340:intron | 15.0% |
| !! | TTAATACAAAAAATCTATCA+TGG | - | chr3_2:91543364-91543383 | Msa0437340:CDS | 15.0% |
| !!! | TAAGAATAATTGATTTTGTA+GGG | - | chr3_2:91543554-91543573 | Msa0437340:CDS | 15.0% |
| !!! | GTATTTGAATTTTATTGTAA+TGG | - | chr3_2:91544081-91544100 | Msa0437340:intron | 15.0% |
| !! | TTAAATTATATCCATGTGTT+TGG | - | chr3_2:91543117-91543136 | Msa0437340:CDS | 20.0% |
| !! | CTAATATGATAATATAGCTA+GGG | + | chr3_2:91543284-91543303 | None:intergenic | 20.0% |
| !! | TCTAATATGATAATATAGCT+AGG | + | chr3_2:91543285-91543304 | None:intergenic | 20.0% |
| !!! | GTAAGAATAATTGATTTTGT+AGG | - | chr3_2:91543553-91543572 | Msa0437340:CDS | 20.0% |
| !! | CATATGGTTAAAATTTGAAT+CGG | + | chr3_2:91543595-91543614 | None:intergenic | 20.0% |
| !!! | TTTTAACCATATGAAAACAT+AGG | - | chr3_2:91543602-91543621 | Msa0437340:intron | 20.0% |
| !!! | TTTTTACCTATGTTTTCATA+TGG | + | chr3_2:91543611-91543630 | None:intergenic | 20.0% |
| !! | TGAAAACATAGGTAAAAATA+AGG | - | chr3_2:91543613-91543632 | Msa0437340:intron | 20.0% |
| !! | TTAAATTATATCCATGTGTT+TGG | - | chr3_2:91543117-91543136 | Msa0437340:CDS | 20.0% |
| !! | CTAATATGATAATATAGCTA+GGG | + | chr3_2:91543284-91543303 | None:intergenic | 20.0% |
| !! | TCTAATATGATAATATAGCT+AGG | + | chr3_2:91543285-91543304 | None:intergenic | 20.0% |
| !!! | GTAAGAATAATTGATTTTGT+AGG | - | chr3_2:91543553-91543572 | Msa0437340:CDS | 20.0% |
| !! | CATATGGTTAAAATTTGAAT+CGG | + | chr3_2:91543595-91543614 | None:intergenic | 20.0% |
| !!! | TTTTAACCATATGAAAACAT+AGG | - | chr3_2:91543602-91543621 | Msa0437340:intron | 20.0% |
| !!! | TTTTTACCTATGTTTTCATA+TGG | + | chr3_2:91543611-91543630 | None:intergenic | 20.0% |
| !! | TGAAAACATAGGTAAAAATA+AGG | - | chr3_2:91543613-91543632 | Msa0437340:intron | 20.0% |
| ! | ATATAATTTAACCTGAGATG+CGG | + | chr3_2:91543108-91543127 | None:intergenic | 25.0% |
| ! | TTTGGATATCTAGTTGTATT+TGG | - | chr3_2:91543135-91543154 | Msa0437340:CDS | 25.0% |
| ! | ATATCTAGTTGTATTTGGAT+AGG | - | chr3_2:91543140-91543159 | Msa0437340:intron | 25.0% |
| ! | TCTCACATTTAACAGAAATA+TGG | + | chr3_2:91543222-91543241 | None:intergenic | 25.0% |
| ! | ATCTTTGACAAATATGAGTT+TGG | + | chr3_2:91543925-91543944 | None:intergenic | 25.0% |
| ! | TATTTGTCAAAGATAGATCA+TGG | - | chr3_2:91543931-91543950 | Msa0437340:intron | 25.0% |
| ! | TTCTTCCGAAACTATTATTA+AGG | - | chr3_2:91544002-91544021 | Msa0437340:intron | 25.0% |
| ! | TGTCACCTTAATAATAGTTT+CGG | + | chr3_2:91544010-91544029 | None:intergenic | 25.0% |
| !! | ATGTCTTATCTCTTTTCAAT+TGG | - | chr3_2:91544056-91544075 | Msa0437340:intron | 25.0% |
| !!! | GTAATGGACTTGTTTTTTTA+AGG | - | chr3_2:91544097-91544116 | Msa0437340:intron | 25.0% |
| ! | GAGTTTGTACAAAAATTCTT+GGG | - | chr3_2:91544314-91544333 | Msa0437340:intron | 25.0% |
| ! | AGTTTGTACAAAAATTCTTG+GGG | - | chr3_2:91544315-91544334 | Msa0437340:intron | 25.0% |
| !! | ATATTGCATTCAATTAGTCT+GGG | - | chr3_2:91544541-91544560 | Msa0437340:exon | 25.0% |
| ! | ATATAATTTAACCTGAGATG+CGG | + | chr3_2:91543108-91543127 | None:intergenic | 25.0% |
| ! | TTTGGATATCTAGTTGTATT+TGG | - | chr3_2:91543135-91543154 | Msa0437340:CDS | 25.0% |
| ! | ATATCTAGTTGTATTTGGAT+AGG | - | chr3_2:91543140-91543159 | Msa0437340:intron | 25.0% |
| ! | TCTCACATTTAACAGAAATA+TGG | + | chr3_2:91543222-91543241 | None:intergenic | 25.0% |
| ! | ATCTTTGACAAATATGAGTT+TGG | + | chr3_2:91543925-91543944 | None:intergenic | 25.0% |
| ! | TATTTGTCAAAGATAGATCA+TGG | - | chr3_2:91543931-91543950 | Msa0437340:intron | 25.0% |
| ! | TTCTTCCGAAACTATTATTA+AGG | - | chr3_2:91544002-91544021 | Msa0437340:intron | 25.0% |
| ! | TGTCACCTTAATAATAGTTT+CGG | + | chr3_2:91544010-91544029 | None:intergenic | 25.0% |
| !! | ATGTCTTATCTCTTTTCAAT+TGG | - | chr3_2:91544056-91544075 | Msa0437340:intron | 25.0% |
| !!! | GTAATGGACTTGTTTTTTTA+AGG | - | chr3_2:91544097-91544116 | Msa0437340:intron | 25.0% |
| ! | GAGTTTGTACAAAAATTCTT+GGG | - | chr3_2:91544314-91544333 | Msa0437340:intron | 25.0% |
| ! | AGTTTGTACAAAAATTCTTG+GGG | - | chr3_2:91544315-91544334 | Msa0437340:intron | 25.0% |
| !! | ATCAACAAGCTTTTAGCTAA+AGG | - | chr3_2:91542782-91542801 | Msa0437340:CDS | 30.0% |
| TTTGCAAAGCCTTTATTAGT+GGG | + | chr3_2:91542914-91542933 | None:intergenic | 30.0% | |
| ATTTGCAAAGCCTTTATTAG+TGG | + | chr3_2:91542915-91542934 | None:intergenic | 30.0% | |
| ! | TTACAACTCAATTGACTTTG+AGG | - | chr3_2:91543025-91543044 | Msa0437340:CDS | 30.0% |
| TATAATTTAACCTGAGATGC+GGG | + | chr3_2:91543107-91543126 | None:intergenic | 30.0% | |
| TAACTCAGTATTTACGAAAC+TGG | - | chr3_2:91543165-91543184 | Msa0437340:intron | 30.0% | |
| ! | ATTTACGAAACTGGCTTATA+AGG | - | chr3_2:91543174-91543193 | Msa0437340:intron | 30.0% |
| GCTCTTTATTGGAATTGTAT+TGG | + | chr3_2:91543493-91543512 | None:intergenic | 30.0% | |
| TGGTTAAAATTTGAATCGGT+CGG | + | chr3_2:91543591-91543610 | None:intergenic | 30.0% | |
| ATAATATGCATAGCAGTTCA+AGG | - | chr3_2:91543680-91543699 | Msa0437340:intron | 30.0% | |
| !! | GACTGGTTTCAATGATATAA+TGG | - | chr3_2:91543827-91543846 | Msa0437340:intron | 30.0% |
| !! | ATATAATGGATGAAACTTGC+TGG | - | chr3_2:91543841-91543860 | Msa0437340:intron | 30.0% |
| ATATGCTAAAGAATCGTTGA+GGG | + | chr3_2:91543871-91543890 | None:intergenic | 30.0% | |
| AATATGCTAAAGAATCGTTG+AGG | + | chr3_2:91543872-91543891 | None:intergenic | 30.0% | |
| TTACCTTAAGATAAGCATCA+TGG | + | chr3_2:91543899-91543918 | None:intergenic | 30.0% | |
| ! | TCTTATCTCTTTTCAATTGG+TGG | - | chr3_2:91544059-91544078 | Msa0437340:intron | 30.0% |
| CATATCACAGAAAATGCAAA+TGG | - | chr3_2:91544278-91544297 | Msa0437340:CDS | 30.0% | |
| GGAGTTTGTACAAAAATTCT+TGG | - | chr3_2:91544313-91544332 | Msa0437340:intron | 30.0% | |
| !! | GAAAGTACTTCATCAATCAA+TGG | - | chr3_2:91544392-91544411 | Msa0437340:intron | 30.0% |
| ATTTGAATACTGAGATGAAC+TGG | + | chr3_2:91544485-91544504 | None:intergenic | 30.0% | |
| CATATTGCATTCAATTAGTC+TGG | - | chr3_2:91544540-91544559 | Msa0437340:exon | 30.0% | |
| !! | ATCAACAAGCTTTTAGCTAA+AGG | - | chr3_2:91542782-91542801 | Msa0437340:CDS | 30.0% |
| TTTGCAAAGCCTTTATTAGT+GGG | + | chr3_2:91542914-91542933 | None:intergenic | 30.0% | |
| ATTTGCAAAGCCTTTATTAG+TGG | + | chr3_2:91542915-91542934 | None:intergenic | 30.0% | |
| ! | TTACAACTCAATTGACTTTG+AGG | - | chr3_2:91543025-91543044 | Msa0437340:CDS | 30.0% |
| TATAATTTAACCTGAGATGC+GGG | + | chr3_2:91543107-91543126 | None:intergenic | 30.0% | |
| TAACTCAGTATTTACGAAAC+TGG | - | chr3_2:91543165-91543184 | Msa0437340:intron | 30.0% | |
| ! | ATTTACGAAACTGGCTTATA+AGG | - | chr3_2:91543174-91543193 | Msa0437340:intron | 30.0% |
| GCTCTTTATTGGAATTGTAT+TGG | + | chr3_2:91543493-91543512 | None:intergenic | 30.0% | |
| TGGTTAAAATTTGAATCGGT+CGG | + | chr3_2:91543591-91543610 | None:intergenic | 30.0% | |
| ATAATATGCATAGCAGTTCA+AGG | - | chr3_2:91543680-91543699 | Msa0437340:intron | 30.0% | |
| !! | GACTGGTTTCAATGATATAA+TGG | - | chr3_2:91543827-91543846 | Msa0437340:intron | 30.0% |
| !! | ATATAATGGATGAAACTTGC+TGG | - | chr3_2:91543841-91543860 | Msa0437340:intron | 30.0% |
| ATATGCTAAAGAATCGTTGA+GGG | + | chr3_2:91543871-91543890 | None:intergenic | 30.0% | |
| AATATGCTAAAGAATCGTTG+AGG | + | chr3_2:91543872-91543891 | None:intergenic | 30.0% | |
| TTACCTTAAGATAAGCATCA+TGG | + | chr3_2:91543899-91543918 | None:intergenic | 30.0% | |
| ! | TCTTATCTCTTTTCAATTGG+TGG | - | chr3_2:91544059-91544078 | Msa0437340:intron | 30.0% |
| CATATCACAGAAAATGCAAA+TGG | - | chr3_2:91544278-91544297 | Msa0437340:CDS | 30.0% | |
| GGAGTTTGTACAAAAATTCT+TGG | - | chr3_2:91544313-91544332 | Msa0437340:intron | 30.0% | |
| !! | GAAAGTACTTCATCAATCAA+TGG | - | chr3_2:91544392-91544411 | Msa0437340:intron | 30.0% |
| ATTTGAATACTGAGATGAAC+TGG | + | chr3_2:91544485-91544504 | None:intergenic | 30.0% | |
| CAACTAGATATCCAAACACA+TGG | + | chr3_2:91543131-91543150 | None:intergenic | 35.0% | |
| TAGGGCTATCAAAAATCCAT+TGG | + | chr3_2:91543266-91543285 | None:intergenic | 35.0% | |
| ! | CTCACAAAATCAGCTTTGTA+AGG | + | chr3_2:91543332-91543351 | None:intergenic | 35.0% |
| !! | CTTACAAAGCTGATTTTGTG+AGG | - | chr3_2:91543330-91543349 | Msa0437340:intron | 35.0% |
| AACAAGTGGTTCAACTTCAA+CGG | + | chr3_2:91543410-91543429 | None:intergenic | 35.0% | |
| !! | ACCACTTGTTATCAAACAAG+AGG | - | chr3_2:91543420-91543439 | Msa0437340:CDS | 35.0% |
| ! | TCCTCTTGTTTGATAACAAG+TGG | + | chr3_2:91543424-91543443 | None:intergenic | 35.0% |
| !! | ACTTGTTATCAAACAAGAGG+AGG | - | chr3_2:91543423-91543442 | Msa0437340:CDS | 35.0% |
| ! | CTTGTTATCAAACAAGAGGA+GGG | - | chr3_2:91543424-91543443 | Msa0437340:CDS | 35.0% |
| TATTGGAGTCTCATATTGCT+CGG | + | chr3_2:91543476-91543495 | None:intergenic | 35.0% | |
| TTAAACGTGGAGCTCTTTAT+TGG | + | chr3_2:91543504-91543523 | None:intergenic | 35.0% | |
| AGACCTTACATCATTAAACG+TGG | + | chr3_2:91543517-91543536 | None:intergenic | 35.0% | |
| TGCTATGTATTGTAAGAGAG+CGG | - | chr3_2:91543740-91543759 | Msa0437340:intron | 35.0% | |
| CTTCTCCAATGAAAGATGAT+GGG | - | chr3_2:91543805-91543824 | Msa0437340:intron | 35.0% | |
| TATGCTAAAGAATCGTTGAG+GGG | + | chr3_2:91543870-91543889 | None:intergenic | 35.0% | |
| GTACCATGATGCTTATCTTA+AGG | - | chr3_2:91543893-91543912 | Msa0437340:intron | 35.0% | |
| TTATTCAAAGACAGTGACAG+AGG | - | chr3_2:91544127-91544146 | Msa0437340:intron | 35.0% | |
| AGGAATATATGTTGAGCTGT+GGG | - | chr3_2:91544147-91544166 | Msa0437340:intron | 35.0% | |
| ACATCATCAACATGTACAAG+AGG | + | chr3_2:91544347-91544366 | None:intergenic | 35.0% | |
| TGAAGCTCATATATTCTGCA+TGG | - | chr3_2:91544370-91544389 | Msa0437340:intron | 35.0% | |
| GTACTTCATCAATCAATGGA+CGG | - | chr3_2:91544396-91544415 | Msa0437340:intron | 35.0% | |
| CAACTAGATATCCAAACACA+TGG | + | chr3_2:91543131-91543150 | None:intergenic | 35.0% | |
| TAGGGCTATCAAAAATCCAT+TGG | + | chr3_2:91543266-91543285 | None:intergenic | 35.0% | |
| ! | CTCACAAAATCAGCTTTGTA+AGG | + | chr3_2:91543332-91543351 | None:intergenic | 35.0% |
| !! | CTTACAAAGCTGATTTTGTG+AGG | - | chr3_2:91543330-91543349 | Msa0437340:intron | 35.0% |
| AACAAGTGGTTCAACTTCAA+CGG | + | chr3_2:91543410-91543429 | None:intergenic | 35.0% | |
| !! | ACCACTTGTTATCAAACAAG+AGG | - | chr3_2:91543420-91543439 | Msa0437340:CDS | 35.0% |
| ! | TCCTCTTGTTTGATAACAAG+TGG | + | chr3_2:91543424-91543443 | None:intergenic | 35.0% |
| !! | ACTTGTTATCAAACAAGAGG+AGG | - | chr3_2:91543423-91543442 | Msa0437340:CDS | 35.0% |
| ! | CTTGTTATCAAACAAGAGGA+GGG | - | chr3_2:91543424-91543443 | Msa0437340:CDS | 35.0% |
| TATTGGAGTCTCATATTGCT+CGG | + | chr3_2:91543476-91543495 | None:intergenic | 35.0% | |
| TTAAACGTGGAGCTCTTTAT+TGG | + | chr3_2:91543504-91543523 | None:intergenic | 35.0% | |
| AGACCTTACATCATTAAACG+TGG | + | chr3_2:91543517-91543536 | None:intergenic | 35.0% | |
| TGCTATGTATTGTAAGAGAG+CGG | - | chr3_2:91543740-91543759 | Msa0437340:intron | 35.0% | |
| CTTCTCCAATGAAAGATGAT+GGG | - | chr3_2:91543805-91543824 | Msa0437340:intron | 35.0% | |
| TATGCTAAAGAATCGTTGAG+GGG | + | chr3_2:91543870-91543889 | None:intergenic | 35.0% | |
| GTACCATGATGCTTATCTTA+AGG | - | chr3_2:91543893-91543912 | Msa0437340:intron | 35.0% | |
| TTATTCAAAGACAGTGACAG+AGG | - | chr3_2:91544127-91544146 | Msa0437340:intron | 35.0% | |
| AGGAATATATGTTGAGCTGT+GGG | - | chr3_2:91544147-91544166 | Msa0437340:intron | 35.0% | |
| ACATCATCAACATGTACAAG+AGG | + | chr3_2:91544347-91544366 | None:intergenic | 35.0% | |
| TGAAGCTCATATATTCTGCA+TGG | - | chr3_2:91544370-91544389 | Msa0437340:intron | 35.0% | |
| GTACTTCATCAATCAATGGA+CGG | - | chr3_2:91544396-91544415 | Msa0437340:intron | 35.0% | |
| GCAAATCACACACTTTACAG+AGG | - | chr3_2:91542929-91542948 | Msa0437340:CDS | 40.0% | |
| CTTTACAGAGGATGAGTCTA+AGG | - | chr3_2:91542941-91542960 | Msa0437340:CDS | 40.0% | |
| TCCACAATCACAAGACAAAC+TGG | - | chr3_2:91542983-91543002 | Msa0437340:CDS | 40.0% | |
| ACCAGTTTGTCTTGTGATTG+TGG | + | chr3_2:91542987-91543006 | None:intergenic | 40.0% | |
| !! | TGACTTTGAGGCTGCAATTA+AGG | - | chr3_2:91543037-91543056 | Msa0437340:CDS | 40.0% |
| !! | GACTTTGAGGCTGCAATTAA+GGG | - | chr3_2:91543038-91543057 | Msa0437340:CDS | 40.0% |
| AGACTGTGTCCAATAGAAAG+TGG | - | chr3_2:91543239-91543258 | Msa0437340:intron | 40.0% | |
| TCCAATAGAAAGTGGTCCAA+TGG | - | chr3_2:91543247-91543266 | Msa0437340:intron | 40.0% | |
| TCCATTGGACCACTTTCTAT+TGG | + | chr3_2:91543251-91543270 | None:intergenic | 40.0% | |
| ATTGGAGTCTCATATTGCTC+GGG | + | chr3_2:91543475-91543494 | None:intergenic | 40.0% | |
| GCTCCACGTTTAATGATGTA+AGG | - | chr3_2:91543511-91543530 | Msa0437340:CDS | 40.0% | |
| GCTATGTATTGTAAGAGAGC+GGG | - | chr3_2:91543741-91543760 | Msa0437340:intron | 40.0% | |
| AGAAGCAGATACAACAGATC+CGG | + | chr3_2:91543790-91543809 | None:intergenic | 40.0% | |
| GCTTCTCCAATGAAAGATGA+TGG | - | chr3_2:91543804-91543823 | Msa0437340:intron | 40.0% | |
| GAGGAATATATGTTGAGCTG+TGG | - | chr3_2:91544146-91544165 | Msa0437340:intron | 40.0% | |
| AGCTGTGGGAACAATGAAAA+TGG | - | chr3_2:91544161-91544180 | Msa0437340:CDS | 40.0% | |
| TGTGGGAACAATGAAAATGG+TGG | - | chr3_2:91544164-91544183 | Msa0437340:CDS | 40.0% | |
| ! | GGAACAATGAAAATGGTGGA+GGG | - | chr3_2:91544168-91544187 | Msa0437340:CDS | 40.0% |
| ATACAAATTGCAACGCTACC+GGG | + | chr3_2:91544254-91544273 | None:intergenic | 40.0% | |
| GATACAAATTGCAACGCTAC+CGG | + | chr3_2:91544255-91544274 | None:intergenic | 40.0% | |
| GCAAATCACACACTTTACAG+AGG | - | chr3_2:91542929-91542948 | Msa0437340:CDS | 40.0% | |
| CTTTACAGAGGATGAGTCTA+AGG | - | chr3_2:91542941-91542960 | Msa0437340:CDS | 40.0% | |
| TCCACAATCACAAGACAAAC+TGG | - | chr3_2:91542983-91543002 | Msa0437340:CDS | 40.0% | |
| ACCAGTTTGTCTTGTGATTG+TGG | + | chr3_2:91542987-91543006 | None:intergenic | 40.0% | |
| !! | TGACTTTGAGGCTGCAATTA+AGG | - | chr3_2:91543037-91543056 | Msa0437340:CDS | 40.0% |
| !! | GACTTTGAGGCTGCAATTAA+GGG | - | chr3_2:91543038-91543057 | Msa0437340:CDS | 40.0% |
| AGACTGTGTCCAATAGAAAG+TGG | - | chr3_2:91543239-91543258 | Msa0437340:intron | 40.0% | |
| TCCAATAGAAAGTGGTCCAA+TGG | - | chr3_2:91543247-91543266 | Msa0437340:intron | 40.0% | |
| TCCATTGGACCACTTTCTAT+TGG | + | chr3_2:91543251-91543270 | None:intergenic | 40.0% | |
| ATTGGAGTCTCATATTGCTC+GGG | + | chr3_2:91543475-91543494 | None:intergenic | 40.0% | |
| GCTCCACGTTTAATGATGTA+AGG | - | chr3_2:91543511-91543530 | Msa0437340:CDS | 40.0% | |
| GCTATGTATTGTAAGAGAGC+GGG | - | chr3_2:91543741-91543760 | Msa0437340:intron | 40.0% | |
| AGAAGCAGATACAACAGATC+CGG | + | chr3_2:91543790-91543809 | None:intergenic | 40.0% | |
| GCTTCTCCAATGAAAGATGA+TGG | - | chr3_2:91543804-91543823 | Msa0437340:intron | 40.0% | |
| GAGGAATATATGTTGAGCTG+TGG | - | chr3_2:91544146-91544165 | Msa0437340:intron | 40.0% | |
| AGCTGTGGGAACAATGAAAA+TGG | - | chr3_2:91544161-91544180 | Msa0437340:CDS | 40.0% | |
| TGTGGGAACAATGAAAATGG+TGG | - | chr3_2:91544164-91544183 | Msa0437340:CDS | 40.0% | |
| ! | GGAACAATGAAAATGGTGGA+GGG | - | chr3_2:91544168-91544187 | Msa0437340:CDS | 40.0% |
| ATACAAATTGCAACGCTACC+GGG | + | chr3_2:91544254-91544273 | None:intergenic | 40.0% | |
| GATACAAATTGCAACGCTAC+CGG | + | chr3_2:91544255-91544274 | None:intergenic | 40.0% | |
| !! | GGTGATGGAAGCAATGTGTA+AGG | - | chr3_2:91542718-91542737 | Msa0437340:three_prime_UTR | 45.0% |
| ATGTGTAAGGTATGCGTCAC+AGG | - | chr3_2:91542731-91542750 | Msa0437340:exon | 45.0% | |
| ! | TCAAGTCTCTGAGAGTTGCA+TGG | + | chr3_2:91542817-91542836 | None:intergenic | 45.0% |
| CTTCCACCACCCACTAATAA+AGG | - | chr3_2:91542902-91542921 | Msa0437340:CDS | 45.0% | |
| ! | AAGCCTTTATTAGTGGGTGG+TGG | + | chr3_2:91542908-91542927 | None:intergenic | 45.0% |
| GCAAAGCCTTTATTAGTGGG+TGG | + | chr3_2:91542911-91542930 | None:intergenic | 45.0% | |
| TACAGAGGATGAGTCTAAGG+TGG | - | chr3_2:91542944-91542963 | Msa0437340:CDS | 45.0% | |
| GGTTCAACTTCAACGGATCT+TGG | + | chr3_2:91543403-91543422 | None:intergenic | 45.0% | |
| ! | TCTCATATTGCTCGGGTTGT+TGG | + | chr3_2:91543468-91543487 | None:intergenic | 45.0% |
| !! | ATTACTGAAGCATCGCTTGC+TGG | - | chr3_2:91543705-91543724 | Msa0437340:intron | 45.0% |
| !! | TTACTGAAGCATCGCTTGCT+GGG | - | chr3_2:91543706-91543725 | Msa0437340:intron | 45.0% |
| GTATTGTAAGAGAGCGGGAA+CGG | - | chr3_2:91543746-91543765 | Msa0437340:intron | 45.0% | |
| ! | GTGAAGCGTCTCATTTACAC+CGG | - | chr3_2:91543768-91543787 | Msa0437340:intron | 45.0% |
| CCAGTCCCATCATCTTTCAT+TGG | + | chr3_2:91543813-91543832 | None:intergenic | 45.0% | |
| !! | CCAATGAAAGATGATGGGAC+TGG | - | chr3_2:91543810-91543829 | Msa0437340:intron | 45.0% |
| GGGAACAATGAAAATGGTGG+AGG | - | chr3_2:91544167-91544186 | Msa0437340:CDS | 45.0% | |
| ! | CAATGAAAATGGTGGAGGGT+TGG | - | chr3_2:91544172-91544191 | Msa0437340:CDS | 45.0% |
| AGGTGGTAAGTCTCCTATGT+GGG | - | chr3_2:91544195-91544214 | Msa0437340:CDS | 45.0% | |
| ACTCTTCAATCCTTCACACC+CGG | - | chr3_2:91544233-91544252 | Msa0437340:CDS | 45.0% | |
| TGCAAATGGACGCAAATCAC+TGG | - | chr3_2:91544292-91544311 | Msa0437340:CDS | 45.0% | |
| !! | GGTGATGGAAGCAATGTGTA+AGG | - | chr3_2:91542718-91542737 | Msa0437340:three_prime_UTR | 45.0% |
| ATGTGTAAGGTATGCGTCAC+AGG | - | chr3_2:91542731-91542750 | Msa0437340:exon | 45.0% | |
| ! | TCAAGTCTCTGAGAGTTGCA+TGG | + | chr3_2:91542817-91542836 | None:intergenic | 45.0% |
| CTTCCACCACCCACTAATAA+AGG | - | chr3_2:91542902-91542921 | Msa0437340:CDS | 45.0% | |
| ! | AAGCCTTTATTAGTGGGTGG+TGG | + | chr3_2:91542908-91542927 | None:intergenic | 45.0% |
| GCAAAGCCTTTATTAGTGGG+TGG | + | chr3_2:91542911-91542930 | None:intergenic | 45.0% | |
| TACAGAGGATGAGTCTAAGG+TGG | - | chr3_2:91542944-91542963 | Msa0437340:CDS | 45.0% | |
| GGTTCAACTTCAACGGATCT+TGG | + | chr3_2:91543403-91543422 | None:intergenic | 45.0% | |
| ! | TCTCATATTGCTCGGGTTGT+TGG | + | chr3_2:91543468-91543487 | None:intergenic | 45.0% |
| !! | ATTACTGAAGCATCGCTTGC+TGG | - | chr3_2:91543705-91543724 | Msa0437340:intron | 45.0% |
| !! | TTACTGAAGCATCGCTTGCT+GGG | - | chr3_2:91543706-91543725 | Msa0437340:intron | 45.0% |
| GTATTGTAAGAGAGCGGGAA+CGG | - | chr3_2:91543746-91543765 | Msa0437340:intron | 45.0% | |
| ! | GTGAAGCGTCTCATTTACAC+CGG | - | chr3_2:91543768-91543787 | Msa0437340:intron | 45.0% |
| CCAGTCCCATCATCTTTCAT+TGG | + | chr3_2:91543813-91543832 | None:intergenic | 45.0% | |
| !! | CCAATGAAAGATGATGGGAC+TGG | - | chr3_2:91543810-91543829 | Msa0437340:intron | 45.0% |
| GGGAACAATGAAAATGGTGG+AGG | - | chr3_2:91544167-91544186 | Msa0437340:CDS | 45.0% | |
| ! | CAATGAAAATGGTGGAGGGT+TGG | - | chr3_2:91544172-91544191 | Msa0437340:CDS | 45.0% |
| AGGTGGTAAGTCTCCTATGT+GGG | - | chr3_2:91544195-91544214 | Msa0437340:CDS | 45.0% | |
| ACTCTTCAATCCTTCACACC+CGG | - | chr3_2:91544233-91544252 | Msa0437340:CDS | 45.0% | |
| TGCAAATGGACGCAAATCAC+TGG | - | chr3_2:91544292-91544311 | Msa0437340:CDS | 45.0% | |
| GATGCGGGTTCATGGATCAA+GGG | + | chr3_2:91543092-91543111 | None:intergenic | 50.0% | |
| AGATGCGGGTTCATGGATCA+AGG | + | chr3_2:91543093-91543112 | None:intergenic | 50.0% | |
| TAACCTGAGATGCGGGTTCA+TGG | + | chr3_2:91543100-91543119 | None:intergenic | 50.0% | |
| ! | TGAAAATGGTGGAGGGTTGG+AGG | - | chr3_2:91544175-91544194 | Msa0437340:CDS | 50.0% |
| GAGGTGGTAAGTCTCCTATG+TGG | - | chr3_2:91544194-91544213 | Msa0437340:CDS | 50.0% | |
| GGTGGTAAGTCTCCTATGTG+GGG | - | chr3_2:91544196-91544215 | Msa0437340:CDS | 50.0% | |
| AGTCTCCTATGTGGGGTTGT+AGG | - | chr3_2:91544203-91544222 | Msa0437340:CDS | 50.0% | |
| GATGCGGGTTCATGGATCAA+GGG | + | chr3_2:91543092-91543111 | None:intergenic | 50.0% | |
| AGATGCGGGTTCATGGATCA+AGG | + | chr3_2:91543093-91543112 | None:intergenic | 50.0% | |
| TAACCTGAGATGCGGGTTCA+TGG | + | chr3_2:91543100-91543119 | None:intergenic | 50.0% | |
| ! | TGAAAATGGTGGAGGGTTGG+AGG | - | chr3_2:91544175-91544194 | Msa0437340:CDS | 50.0% |
| GAGGTGGTAAGTCTCCTATG+TGG | - | chr3_2:91544194-91544213 | Msa0437340:CDS | 50.0% | |
| GGTGGTAAGTCTCCTATGTG+GGG | - | chr3_2:91544196-91544215 | Msa0437340:CDS | 50.0% | |
| AGTCTCCTATGTGGGGTTGT+AGG | - | chr3_2:91544203-91544222 | Msa0437340:CDS | 50.0% | |
| GTATGCGTCACAGGTGCTTC+TGG | - | chr3_2:91542740-91542759 | Msa0437340:exon | 55.0% | |
| GGGTTCATGGATCAAGGGTG+TGG | + | chr3_2:91543087-91543106 | None:intergenic | 55.0% | |
| GATCCATGAACCCGCATCTC+AGG | - | chr3_2:91543094-91543113 | Msa0437340:CDS | 55.0% | |
| ! | AAATGGTGGAGGGTTGGAGG+TGG | - | chr3_2:91544178-91544197 | Msa0437340:CDS | 55.0% |
| CTCCTATGTGGGGTTGTAGG+AGG | - | chr3_2:91544206-91544225 | Msa0437340:CDS | 55.0% | |
| CACCTCCTACAACCCCACAT+AGG | + | chr3_2:91544211-91544230 | None:intergenic | 55.0% | |
| GTATGCGTCACAGGTGCTTC+TGG | - | chr3_2:91542740-91542759 | Msa0437340:exon | 55.0% | |
| GGGTTCATGGATCAAGGGTG+TGG | + | chr3_2:91543087-91543106 | None:intergenic | 55.0% | |
| GATCCATGAACCCGCATCTC+AGG | - | chr3_2:91543094-91543113 | Msa0437340:CDS | 55.0% | |
| ! | AAATGGTGGAGGGTTGGAGG+TGG | - | chr3_2:91544178-91544197 | Msa0437340:CDS | 55.0% |
| CTCCTATGTGGGGTTGTAGG+AGG | - | chr3_2:91544206-91544225 | Msa0437340:CDS | 55.0% | |
| CACCTCCTACAACCCCACAT+AGG | + | chr3_2:91544211-91544230 | None:intergenic | 55.0% | |
| TGCAACGCTACCGGGTGTGA+AGG | + | chr3_2:91544246-91544265 | None:intergenic | 60.0% | |
| TGCAACGCTACCGGGTGTGA+AGG | + | chr3_2:91544246-91544265 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 91542713 | 91544560 | 91542713 | ID=Msa0437340;Name=Msa0437340 |
| chr3_2 | mRNA | 91542713 | 91544560 | 91542713 | ID=Msa0437340-mRNA-1;Parent=Msa0437340;Name=Msa0437340-mRNA-1;_AED=0.16;_eAED=0.16;_QI=9|1|0.75|1|1|1|4|37|301 |
| chr3_2 | exon | 91542713 | 91543154 | 91542713 | ID=Msa0437340-mRNA-1:exon:27391;Parent=Msa0437340-mRNA-1 |
| chr3_2 | exon | 91543359 | 91543577 | 91543359 | ID=Msa0437340-mRNA-1:exon:27390;Parent=Msa0437340-mRNA-1 |
| chr3_2 | exon | 91544158 | 91544324 | 91544158 | ID=Msa0437340-mRNA-1:exon:27389;Parent=Msa0437340-mRNA-1 |
| chr3_2 | exon | 91544437 | 91544560 | 91544437 | ID=Msa0437340-mRNA-1:exon:27388;Parent=Msa0437340-mRNA-1 |
| chr3_2 | five_prime_UTR | 91544552 | 91544560 | 91544552 | ID=Msa0437340-mRNA-1:five_prime_utr;Parent=Msa0437340-mRNA-1 |
| chr3_2 | CDS | 91544437 | 91544551 | 91544437 | ID=Msa0437340-mRNA-1:cds;Parent=Msa0437340-mRNA-1 |
| chr3_2 | CDS | 91544158 | 91544324 | 91544158 | ID=Msa0437340-mRNA-1:cds;Parent=Msa0437340-mRNA-1 |
| chr3_2 | CDS | 91543359 | 91543577 | 91543359 | ID=Msa0437340-mRNA-1:cds;Parent=Msa0437340-mRNA-1 |
| chr3_2 | CDS | 91542750 | 91543154 | 91542750 | ID=Msa0437340-mRNA-1:cds;Parent=Msa0437340-mRNA-1 |
| chr3_2 | three_prime_UTR | 91542713 | 91542749 | 91542713 | ID=Msa0437340-mRNA-1:three_prime_utr;Parent=Msa0437340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
