Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1441210 | sp|Q5XLY0|ANR_GINBI | 39.189 | 148 | 88 | 1 | 7 | 154 | 15 | 160 | 4.99e-31 | 120 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1441210 | G7L426 | 93.299 | 194 | 13 | 0 | 1 | 194 | 1 | 194 | 1.16e-128 | 376 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1427790 | Msa1441210 | 0.941269 | 5.581008e-101 | -8.615850e-47 |
| Msa0437340 | Msa1441210 | 0.961299 | 1.533651e-119 | -8.615850e-47 |
| Msa1037720 | Msa1441210 | 0.855627 | 5.556916e-62 | -8.615850e-47 |
| Msa1130340 | Msa1441210 | 0.949255 | 1.841981e-107 | -8.615850e-47 |
| Msa1130640 | Msa1441210 | 0.964128 | 6.139782e-123 | -8.615850e-47 |
| Msa1202800 | Msa1441210 | 0.804537 | 2.060308e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1441210 | MtrunA17_Chr7g0275521 | 93.299 | 194 | 13 | 0 | 1 | 194 | 1 | 194 | 3.01e-131 | 374 |
| Msa1441210 | MtrunA17_Chr7g0275521 | 72.727 | 66 | 18 | 0 | 194 | 259 | 275 | 340 | 2.83e-25 | 102 |
| Msa1441210 | MtrunA17_Chr2g0281991 | 60.714 | 196 | 73 | 3 | 1 | 194 | 2 | 195 | 5.20e-78 | 239 |
| Msa1441210 | MtrunA17_Chr2g0282011 | 60.000 | 195 | 74 | 3 | 1 | 193 | 2 | 194 | 3.84e-77 | 237 |
| Msa1441210 | MtrunA17_Chr2g0282001 | 59.184 | 196 | 76 | 3 | 1 | 194 | 1 | 194 | 3.17e-75 | 232 |
| Msa1441210 | MtrunA17_Chr2g0282001 | 70.455 | 44 | 13 | 0 | 216 | 259 | 296 | 339 | 4.70e-14 | 70.9 |
| Msa1441210 | MtrunA17_Chr1g0155411 | 42.069 | 145 | 80 | 1 | 7 | 151 | 8 | 148 | 5.15e-31 | 117 |
| Msa1441210 | MtrunA17_Chr7g0245741 | 36.735 | 196 | 109 | 5 | 2 | 194 | 3 | 186 | 2.03e-28 | 110 |
| Msa1441210 | MtrunA17_Chr7g0245671 | 38.333 | 180 | 103 | 5 | 6 | 184 | 7 | 179 | 2.47e-28 | 110 |
| Msa1441210 | MtrunA17_Chr7g0245731 | 35.638 | 188 | 109 | 4 | 2 | 186 | 53 | 231 | 3.60e-28 | 110 |
| Msa1441210 | MtrunA17_Chr7g0245641 | 37.949 | 195 | 109 | 6 | 2 | 194 | 40 | 224 | 4.08e-28 | 110 |
| Msa1441210 | MtrunA17_Chr1g0155431 | 39.310 | 145 | 84 | 1 | 7 | 151 | 8 | 148 | 1.56e-27 | 108 |
| Msa1441210 | MtrunA17_Chr7g0245691 | 38.462 | 195 | 108 | 7 | 2 | 194 | 3 | 187 | 1.82e-27 | 107 |
| Msa1441210 | MtrunA17_Chr4g0010991 | 35.556 | 180 | 107 | 4 | 7 | 184 | 8 | 180 | 2.09e-27 | 107 |
| Msa1441210 | MtrunA17_Chr4g0048961 | 40.411 | 146 | 84 | 2 | 6 | 151 | 13 | 155 | 1.21e-26 | 105 |
| Msa1441210 | MtrunA17_Chr4g0039321 | 37.419 | 155 | 82 | 4 | 7 | 154 | 9 | 155 | 7.88e-26 | 103 |
| Msa1441210 | MtrunA17_Chr7g0245631 | 34.392 | 189 | 115 | 5 | 2 | 189 | 3 | 183 | 3.33e-25 | 101 |
| Msa1441210 | MtrunA17_Chr3g0106111 | 38.926 | 149 | 87 | 3 | 7 | 154 | 5 | 150 | 5.58e-25 | 100 |
| Msa1441210 | MtrunA17_Chr3g0077221 | 35.570 | 149 | 87 | 2 | 7 | 151 | 10 | 153 | 5.66e-25 | 101 |
| Msa1441210 | MtrunA17_Chr3g0077231 | 35.862 | 145 | 92 | 1 | 7 | 151 | 6 | 149 | 1.08e-24 | 100 |
| Msa1441210 | MtrunA17_Chr4g0039311 | 37.500 | 128 | 74 | 2 | 7 | 131 | 11 | 135 | 7.76e-24 | 98.2 |
| Msa1441210 | MtrunA17_Chr2g0331211 | 37.584 | 149 | 90 | 3 | 6 | 153 | 4 | 150 | 4.64e-23 | 95.9 |
| Msa1441210 | MtrunA17_Chr4g0042101 | 35.602 | 191 | 108 | 8 | 6 | 189 | 23 | 205 | 6.48e-23 | 95.9 |
| Msa1441210 | MtrunA17_Chr8g0364051 | 37.209 | 129 | 75 | 2 | 7 | 132 | 8 | 133 | 9.41e-23 | 95.1 |
| Msa1441210 | MtrunA17_Chr5g0431311 | 35.616 | 146 | 90 | 3 | 7 | 151 | 5 | 147 | 2.70e-22 | 93.6 |
| Msa1441210 | MtrunA17_Chr8g0363831 | 36.486 | 148 | 81 | 4 | 7 | 148 | 9 | 149 | 1.08e-21 | 92.0 |
| Msa1441210 | MtrunA17_Chr2g0291541 | 36.242 | 149 | 86 | 5 | 7 | 151 | 10 | 153 | 2.60e-21 | 91.3 |
| Msa1441210 | MtrunA17_Chr4g0002661 | 34.694 | 147 | 91 | 4 | 6 | 151 | 12 | 154 | 3.35e-20 | 88.2 |
| Msa1441210 | MtrunA17_Chr4g0001321 | 31.792 | 173 | 102 | 6 | 7 | 178 | 17 | 174 | 1.25e-19 | 86.7 |
| Msa1441210 | MtrunA17_Chr2g0333781 | 32.653 | 147 | 91 | 4 | 7 | 153 | 20 | 158 | 1.33e-19 | 86.7 |
| Msa1441210 | MtrunA17_Chr4g0002961 | 31.522 | 184 | 101 | 6 | 6 | 181 | 12 | 178 | 3.14e-17 | 79.7 |
| Msa1441210 | MtrunA17_Chr5g0423551 | 29.545 | 176 | 114 | 5 | 4 | 178 | 1 | 167 | 3.99e-15 | 73.9 |
| Msa1441210 | MtrunA17_Chr7g0245711 | 31.724 | 145 | 88 | 3 | 44 | 186 | 8 | 143 | 5.09e-14 | 70.5 |
| Msa1441210 | MtrunA17_Chr5g0411071 | 24.324 | 148 | 106 | 3 | 7 | 154 | 12 | 153 | 1.64e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1441210 | AT1G09490.1 | 40.690 | 145 | 85 | 1 | 7 | 151 | 8 | 151 | 4.70e-30 | 115 |
| Msa1441210 | AT1G09510.1 | 39.865 | 148 | 88 | 1 | 7 | 154 | 8 | 154 | 5.50e-30 | 114 |
| Msa1441210 | AT1G09500.3 | 38.728 | 173 | 98 | 4 | 7 | 178 | 8 | 173 | 4.99e-29 | 111 |
| Msa1441210 | AT1G09500.1 | 38.728 | 173 | 98 | 4 | 7 | 178 | 8 | 173 | 1.23e-28 | 111 |
| Msa1441210 | AT1G09480.2 | 38.415 | 164 | 88 | 3 | 7 | 158 | 8 | 170 | 2.17e-28 | 110 |
| Msa1441210 | AT1G09480.1 | 38.415 | 164 | 88 | 3 | 7 | 158 | 55 | 217 | 3.45e-28 | 110 |
| Msa1441210 | AT1G66800.1 | 37.143 | 175 | 93 | 5 | 7 | 178 | 8 | 168 | 1.43e-27 | 108 |
| Msa1441210 | AT1G61720.1 | 38.356 | 146 | 87 | 2 | 6 | 151 | 12 | 154 | 2.30e-27 | 108 |
| Msa1441210 | AT4G27250.2 | 37.430 | 179 | 97 | 4 | 8 | 178 | 14 | 185 | 1.11e-26 | 106 |
| Msa1441210 | AT4G27250.1 | 37.430 | 179 | 97 | 4 | 8 | 178 | 14 | 185 | 1.31e-26 | 106 |
| Msa1441210 | AT5G19440.1 | 39.516 | 124 | 75 | 0 | 7 | 130 | 10 | 133 | 2.61e-25 | 102 |
| Msa1441210 | AT1G51410.1 | 38.095 | 126 | 78 | 0 | 7 | 132 | 9 | 134 | 4.12e-25 | 102 |
| Msa1441210 | AT4G35420.1 | 34.868 | 152 | 93 | 3 | 2 | 151 | 3 | 150 | 1.49e-23 | 97.8 |
| Msa1441210 | AT5G42800.1 | 36.054 | 147 | 90 | 1 | 7 | 153 | 8 | 150 | 1.71e-23 | 98.2 |
| Msa1441210 | AT5G58490.1 | 35.862 | 145 | 89 | 3 | 7 | 150 | 9 | 150 | 1.30e-22 | 95.1 |
| Msa1441210 | AT2G45400.4 | 34.211 | 190 | 118 | 4 | 7 | 194 | 40 | 224 | 1.42e-22 | 93.6 |
| Msa1441210 | AT2G33590.1 | 39.073 | 151 | 79 | 6 | 6 | 151 | 8 | 150 | 1.58e-22 | 94.7 |
| Msa1441210 | AT2G45400.1 | 34.211 | 190 | 118 | 4 | 7 | 194 | 40 | 224 | 4.49e-22 | 94.4 |
| Msa1441210 | AT2G45400.2 | 34.211 | 190 | 118 | 4 | 7 | 194 | 40 | 224 | 6.33e-22 | 93.2 |
| Msa1441210 | AT1G15950.6 | 35.333 | 150 | 85 | 5 | 7 | 154 | 13 | 152 | 9.21e-21 | 89.4 |
| Msa1441210 | AT1G15950.4 | 35.333 | 150 | 85 | 5 | 7 | 154 | 13 | 152 | 1.20e-20 | 89.4 |
| Msa1441210 | AT1G15950.5 | 35.333 | 150 | 85 | 5 | 7 | 154 | 13 | 152 | 1.32e-20 | 89.0 |
| Msa1441210 | AT1G15950.2 | 35.333 | 150 | 85 | 5 | 7 | 154 | 13 | 152 | 1.58e-20 | 89.4 |
| Msa1441210 | AT1G15950.3 | 35.333 | 150 | 85 | 5 | 7 | 154 | 13 | 152 | 1.75e-20 | 89.4 |
| Msa1441210 | AT1G15950.1 | 35.333 | 150 | 85 | 5 | 7 | 154 | 13 | 152 | 1.75e-20 | 89.4 |
| Msa1441210 | AT1G80820.2 | 35.333 | 150 | 85 | 5 | 7 | 154 | 8 | 147 | 4.26e-20 | 87.4 |
| Msa1441210 | AT1G80820.1 | 35.333 | 150 | 85 | 5 | 7 | 154 | 8 | 147 | 1.06e-19 | 87.0 |
| Msa1441210 | AT1G76470.1 | 33.514 | 185 | 109 | 7 | 1 | 181 | 1 | 175 | 2.94e-19 | 85.9 |
| Msa1441210 | AT2G02400.1 | 32.759 | 174 | 103 | 6 | 7 | 178 | 6 | 167 | 5.23e-18 | 82.4 |
| Msa1441210 | AT2G33600.1 | 37.584 | 149 | 84 | 5 | 6 | 151 | 8 | 150 | 5.51e-18 | 82.4 |
| Msa1441210 | AT1G68540.1 | 32.258 | 155 | 93 | 3 | 4 | 156 | 1 | 145 | 4.80e-17 | 79.7 |
| Msa1441210 | AT1G25460.1 | 31.111 | 180 | 106 | 5 | 4 | 178 | 1 | 167 | 3.58e-14 | 71.6 |
| Msa1441210 | AT1G09490.2 | 32.759 | 116 | 71 | 2 | 39 | 151 | 9 | 120 | 1.09e-13 | 69.7 |
| Msa1441210 | AT1G09500.2 | 31.915 | 141 | 88 | 4 | 39 | 178 | 6 | 139 | 1.40e-12 | 66.6 |
| Msa1441210 | AT2G45400.3 | 30.114 | 176 | 112 | 5 | 19 | 194 | 3 | 167 | 4.65e-11 | 62.4 |
Find 60 sgRNAs with CRISPR-Local
Find 267 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATGACGCTAAGATGATTT+TGG | 0.198390 | tig0029236:-2953 | Msa1441210:CDS |
| TGACTTTGAGGCTGCAATTA+AGG | 0.212022 | tig0029236:-4654 | Msa1441210:CDS |
| CCCCACTTCATATCCTTCTT+TGG | 0.223576 | tig0029236:+3012 | None:intergenic |
| GTACCATGATGCTTATCTTA+AGG | 0.339878 | tig0029236:-3798 | Msa1441210:intron |
| ATTACTGAAGCATCGCTTGC+TGG | 0.342941 | tig0029236:-3986 | Msa1441210:CDS |
| GACTTTGAGGCTGCAATTAA+GGG | 0.352832 | tig0029236:-4653 | Msa1441210:CDS |
| GTATGCGTCACAGGTGCTTC+TGG | 0.352861 | tig0029236:-4951 | Msa1441210:CDS |
| TTACAACTCAATTGACTTTG+AGG | 0.381158 | tig0029236:-4666 | Msa1441210:CDS |
| GACTGGTTTCAATGATATAA+TGG | 0.390602 | tig0029236:-3864 | Msa1441210:CDS |
| TAACCTGAGATGCGGGTTCA+TGG | 0.394734 | tig0029236:+4594 | None:intergenic |
| CTTTACAGAGGATGAGTCTA+AGG | 0.400084 | tig0029236:-4750 | Msa1441210:intron |
| TCCACAATCACAAGACAAAC+TGG | 0.405298 | tig0029236:-4708 | Msa1441210:CDS |
| CCAGTCCCATCATCTTTCAT+TGG | 0.410585 | tig0029236:+3881 | None:intergenic |
| ATATAATGGATGAAACTTGC+TGG | 0.423061 | tig0029236:-3850 | Msa1441210:CDS |
| GATCCATGAACCCGCATCTC+AGG | 0.456989 | tig0029236:-4597 | Msa1441210:intron |
| GCTTCTCCAATGAAAGATGA+TGG | 0.461395 | tig0029236:-3887 | Msa1441210:CDS |
| CAATGAAAATGGTGGAGGGT+TGG | 0.467224 | tig0029236:-3519 | Msa1441210:CDS |
| ATGTGTAAGGTATGCGTCAC+AGG | 0.467565 | tig0029236:-4960 | Msa1441210:CDS |
| AGCTGTGGGAACAATGAAAA+TGG | 0.468232 | tig0029236:-3530 | Msa1441210:CDS |
| TGCAAATGGACGCAAATCAC+TGG | 0.474718 | tig0029236:-3400 | Msa1441210:CDS |
| TGAAAATGGTGGAGGGTTGG+AGG | 0.475120 | tig0029236:-3516 | Msa1441210:CDS |
| CATATCACAGAAAATGCAAA+TGG | 0.475143 | tig0029236:-3414 | Msa1441210:intron |
| ACCAGTTTGTCTTGTGATTG+TGG | 0.493902 | tig0029236:+4707 | None:intergenic |
| CACATTACAGATATGCAGAT+AGG | 0.522186 | tig0029236:-3035 | Msa1441210:intron |
| TGTCAAATGTGCTAGAAGAA+TGG | 0.523502 | tig0029236:-2923 | Msa1441210:CDS |
| TTACTGAAGCATCGCTTGCT+GGG | 0.524780 | tig0029236:-3985 | Msa1441210:CDS |
| AGATGCGGGTTCATGGATCA+AGG | 0.529187 | tig0029236:+4601 | None:intergenic |
| GTCAAATGTGCTAGAAGAAT+GGG | 0.531939 | tig0029236:-2922 | Msa1441210:CDS |
| GGTGATGGAAGCAATGTGTA+AGG | 0.539971 | tig0029236:-4973 | Msa1441210:exon |
| TATAATTTAACCTGAGATGC+GGG | 0.540168 | tig0029236:+4587 | None:intergenic |
| ATATGCTAAAGAATCGTTGA+GGG | 0.549055 | tig0029236:+3823 | None:intergenic |
| AAATGGTGGAGGGTTGGAGG+TGG | 0.552531 | tig0029236:-3513 | Msa1441210:intron |
| AGAAGCAGATACAACAGATC+CGG | 0.565206 | tig0029236:+3904 | None:intergenic |
| CTTCTCCAATGAAAGATGAT+GGG | 0.569500 | tig0029236:-3886 | Msa1441210:CDS |
| ATATGCAGATAGGCCAAAGA+AGG | 0.573819 | tig0029236:-3025 | Msa1441210:CDS |
| GCCAAAGAAGGATATGAAGT+GGG | 0.575408 | tig0029236:-3013 | Msa1441210:CDS |
| GCTATGTATTGTAAGAGAGC+GGG | 0.575478 | tig0029236:-3950 | Msa1441210:CDS |
| AGGAATATATGTTGAGCTGT+GGG | 0.579788 | tig0029236:-3544 | Msa1441210:CDS |
| GGGTTCATGGATCAAGGGTG+TGG | 0.581982 | tig0029236:+4607 | None:intergenic |
| GAGGAATATATGTTGAGCTG+TGG | 0.584405 | tig0029236:-3545 | Msa1441210:CDS |
| TCAAGTCTCTGAGAGTTGCA+TGG | 0.594926 | tig0029236:+4877 | None:intergenic |
| GGGAACAATGAAAATGGTGG+AGG | 0.596591 | tig0029236:-3524 | Msa1441210:CDS |
| ATATAATTTAACCTGAGATG+CGG | 0.598236 | tig0029236:+4586 | None:intergenic |
| AATATGCTAAAGAATCGTTG+AGG | 0.599579 | tig0029236:+3822 | None:intergenic |
| TGCTATGTATTGTAAGAGAG+CGG | 0.604433 | tig0029236:-3951 | Msa1441210:CDS |
| CCAATGAAAGATGATGGGAC+TGG | 0.605272 | tig0029236:-3881 | Msa1441210:CDS |
| GTATTGTAAGAGAGCGGGAA+CGG | 0.611184 | tig0029236:-3945 | Msa1441210:CDS |
| GGCCAAAGAAGGATATGAAG+TGG | 0.614579 | tig0029236:-3014 | Msa1441210:CDS |
| GACCAGAAAAGGGAAGGTGA+TGG | 0.618651 | tig0029236:-4988 | None:intergenic |
| TTACCTTAAGATAAGCATCA+TGG | 0.622737 | tig0029236:+3795 | None:intergenic |
| TCAACAAAGCTATGTGACAA+AGG | 0.632597 | tig0029236:-2988 | Msa1441210:CDS |
| CCAAAGAAGGATATGAAGTG+GGG | 0.633636 | tig0029236:-3012 | Msa1441210:CDS |
| TACAGAGGATGAGTCTAAGG+TGG | 0.642409 | tig0029236:-4747 | Msa1441210:intron |
| GATGCGGGTTCATGGATCAA+GGG | 0.646418 | tig0029236:+4602 | None:intergenic |
| GGAACAATGAAAATGGTGGA+GGG | 0.652681 | tig0029236:-3523 | Msa1441210:CDS |
| TTATTCAAAGACAGTGACAG+AGG | 0.655380 | tig0029236:-3564 | Msa1441210:CDS |
| TATGCTAAAGAATCGTTGAG+GGG | 0.679306 | tig0029236:+3824 | None:intergenic |
| CAAAGAAGGATATGAAGTGG+GGG | 0.680278 | tig0029236:-3011 | Msa1441210:CDS |
| GTGAAGCGTCTCATTTACAC+CGG | 0.695408 | tig0029236:-3923 | Msa1441210:CDS |
| TGTGGGAACAATGAAAATGG+TGG | 0.725840 | tig0029236:-3527 | Msa1441210:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATACAAAAAATCTATCA+TGG | - | tig0029236:3563-3582 | Msa1441210:CDS | 15.0% |
| !!! | TAAGAATAATTGATTTTGTA+GGG | - | tig0029236:3753-3772 | Msa1441210:intron | 15.0% |
| !!! | GTATTTGAATTTTATTGTAA+TGG | - | tig0029236:4280-4299 | Msa1441210:intron | 15.0% |
| !! | TTAATACAAAAAATCTATCA+TGG | - | tig0029236:3563-3582 | Msa1441210:CDS | 15.0% |
| !!! | TAAGAATAATTGATTTTGTA+GGG | - | tig0029236:3753-3772 | Msa1441210:intron | 15.0% |
| !!! | GTATTTGAATTTTATTGTAA+TGG | - | tig0029236:4280-4299 | Msa1441210:intron | 15.0% |
| !! | TTAAATTATATCCATGTGTT+TGG | - | tig0029236:3316-3335 | Msa1441210:intron | 20.0% |
| !! | CTAATATGATAATATAGCTA+GGG | + | tig0029236:3483-3502 | None:intergenic | 20.0% |
| !! | TCTAATATGATAATATAGCT+AGG | + | tig0029236:3484-3503 | None:intergenic | 20.0% |
| !!! | GTAAGAATAATTGATTTTGT+AGG | - | tig0029236:3752-3771 | Msa1441210:intron | 20.0% |
| !! | CATATGGTTAAAATTTGAAT+CGG | + | tig0029236:3794-3813 | None:intergenic | 20.0% |
| !!! | TTTTAACCATATGAAAACAT+AGG | - | tig0029236:3801-3820 | Msa1441210:CDS | 20.0% |
| !!! | TTTTTACCTATGTTTTCATA+TGG | + | tig0029236:3810-3829 | None:intergenic | 20.0% |
| !! | TGAAAACATAGGTAAAAATA+AGG | - | tig0029236:3812-3831 | Msa1441210:CDS | 20.0% |
| !! | TTAAATTATATCCATGTGTT+TGG | - | tig0029236:3316-3335 | Msa1441210:intron | 20.0% |
| !! | CTAATATGATAATATAGCTA+GGG | + | tig0029236:3483-3502 | None:intergenic | 20.0% |
| !! | TCTAATATGATAATATAGCT+AGG | + | tig0029236:3484-3503 | None:intergenic | 20.0% |
| !!! | GTAAGAATAATTGATTTTGT+AGG | - | tig0029236:3752-3771 | Msa1441210:intron | 20.0% |
| !! | CATATGGTTAAAATTTGAAT+CGG | + | tig0029236:3794-3813 | None:intergenic | 20.0% |
| !!! | TTTTAACCATATGAAAACAT+AGG | - | tig0029236:3801-3820 | Msa1441210:CDS | 20.0% |
| !!! | TTTTTACCTATGTTTTCATA+TGG | + | tig0029236:3810-3829 | None:intergenic | 20.0% |
| !! | TGAAAACATAGGTAAAAATA+AGG | - | tig0029236:3812-3831 | Msa1441210:CDS | 20.0% |
| ! | ATATAATTTAACCTGAGATG+CGG | + | tig0029236:3307-3326 | None:intergenic | 25.0% |
| ! | TTTGGATATCTAGTTGTATT+TGG | - | tig0029236:3334-3353 | Msa1441210:intron | 25.0% |
| ! | ATATCTAGTTGTATTTGGAT+AGG | - | tig0029236:3339-3358 | Msa1441210:intron | 25.0% |
| ! | TCTCACATTTAACAGAAATA+TGG | + | tig0029236:3421-3440 | None:intergenic | 25.0% |
| ! | ATCTTTGACAAATATGAGTT+TGG | + | tig0029236:4124-4143 | None:intergenic | 25.0% |
| ! | TATTTGTCAAAGATAGATCA+TGG | - | tig0029236:4130-4149 | Msa1441210:intron | 25.0% |
| ! | TTCTTCCGAAACTATTATTA+AGG | - | tig0029236:4201-4220 | Msa1441210:intron | 25.0% |
| ! | TGTCACCTTAATAATAGTTT+CGG | + | tig0029236:4209-4228 | None:intergenic | 25.0% |
| !! | ATGTCTTATCTCTTTTCAAT+TGG | - | tig0029236:4255-4274 | Msa1441210:intron | 25.0% |
| !!! | GTAATGGACTTGTTTTTTTA+AGG | - | tig0029236:4296-4315 | Msa1441210:intron | 25.0% |
| ! | GAGTTTGTACAAAAATTCTT+GGG | - | tig0029236:4512-4531 | Msa1441210:intron | 25.0% |
| ! | AGTTTGTACAAAAATTCTTG+GGG | - | tig0029236:4513-4532 | Msa1441210:intron | 25.0% |
| ! | ATATAATTTAACCTGAGATG+CGG | + | tig0029236:3307-3326 | None:intergenic | 25.0% |
| ! | TTTGGATATCTAGTTGTATT+TGG | - | tig0029236:3334-3353 | Msa1441210:intron | 25.0% |
| ! | ATATCTAGTTGTATTTGGAT+AGG | - | tig0029236:3339-3358 | Msa1441210:intron | 25.0% |
| ! | TCTCACATTTAACAGAAATA+TGG | + | tig0029236:3421-3440 | None:intergenic | 25.0% |
| ! | ATCTTTGACAAATATGAGTT+TGG | + | tig0029236:4124-4143 | None:intergenic | 25.0% |
| ! | TATTTGTCAAAGATAGATCA+TGG | - | tig0029236:4130-4149 | Msa1441210:intron | 25.0% |
| ! | TTCTTCCGAAACTATTATTA+AGG | - | tig0029236:4201-4220 | Msa1441210:intron | 25.0% |
| ! | TGTCACCTTAATAATAGTTT+CGG | + | tig0029236:4209-4228 | None:intergenic | 25.0% |
| !! | ATGTCTTATCTCTTTTCAAT+TGG | - | tig0029236:4255-4274 | Msa1441210:intron | 25.0% |
| !!! | GTAATGGACTTGTTTTTTTA+AGG | - | tig0029236:4296-4315 | Msa1441210:intron | 25.0% |
| ! | GAGTTTGTACAAAAATTCTT+GGG | - | tig0029236:4512-4531 | Msa1441210:intron | 25.0% |
| ! | AGTTTGTACAAAAATTCTTG+GGG | - | tig0029236:4513-4532 | Msa1441210:intron | 25.0% |
| !! | ATCAACAAGCTTTTAGCTAA+AGG | - | tig0029236:2981-3000 | Msa1441210:CDS | 30.0% |
| TTTGCAAAGCCTTTATTAGT+GGG | + | tig0029236:3113-3132 | None:intergenic | 30.0% | |
| ATTTGCAAAGCCTTTATTAG+TGG | + | tig0029236:3114-3133 | None:intergenic | 30.0% | |
| ! | TTACAACTCAATTGACTTTG+AGG | - | tig0029236:3224-3243 | Msa1441210:intron | 30.0% |
| TATAATTTAACCTGAGATGC+GGG | + | tig0029236:3306-3325 | None:intergenic | 30.0% | |
| TAACTCAGTATTTACGAAAC+TGG | - | tig0029236:3364-3383 | Msa1441210:intron | 30.0% | |
| ! | ATTTACGAAACTGGCTTATA+AGG | - | tig0029236:3373-3392 | Msa1441210:CDS | 30.0% |
| GCTCTTTATTGGAATTGTAT+TGG | + | tig0029236:3692-3711 | None:intergenic | 30.0% | |
| TGGTTAAAATTTGAATCGGT+CGG | + | tig0029236:3790-3809 | None:intergenic | 30.0% | |
| ATAATATGCATAGCAGTTCA+AGG | - | tig0029236:3879-3898 | Msa1441210:CDS | 30.0% | |
| !! | GACTGGTTTCAATGATATAA+TGG | - | tig0029236:4026-4045 | Msa1441210:intron | 30.0% |
| !! | ATATAATGGATGAAACTTGC+TGG | - | tig0029236:4040-4059 | Msa1441210:intron | 30.0% |
| ATATGCTAAAGAATCGTTGA+GGG | + | tig0029236:4070-4089 | None:intergenic | 30.0% | |
| AATATGCTAAAGAATCGTTG+AGG | + | tig0029236:4071-4090 | None:intergenic | 30.0% | |
| TTACCTTAAGATAAGCATCA+TGG | + | tig0029236:4098-4117 | None:intergenic | 30.0% | |
| ! | TCTTATCTCTTTTCAATTGG+TGG | - | tig0029236:4258-4277 | Msa1441210:intron | 30.0% |
| CATATCACAGAAAATGCAAA+TGG | - | tig0029236:4476-4495 | Msa1441210:intron | 30.0% | |
| GGAGTTTGTACAAAAATTCT+TGG | - | tig0029236:4511-4530 | Msa1441210:intron | 30.0% | |
| !! | GAAAGTACTTCATCAATCAA+TGG | - | tig0029236:4590-4609 | Msa1441210:intron | 30.0% |
| GCAATCATTAAACTGAATTC+TGG | + | tig0029236:4683-4702 | None:intergenic | 30.0% | |
| ! | ATATGACGCTAAGATGATTT+TGG | - | tig0029236:4937-4956 | Msa1441210:CDS | 30.0% |
| !! | ATCAACAAGCTTTTAGCTAA+AGG | - | tig0029236:2981-3000 | Msa1441210:CDS | 30.0% |
| TTTGCAAAGCCTTTATTAGT+GGG | + | tig0029236:3113-3132 | None:intergenic | 30.0% | |
| ATTTGCAAAGCCTTTATTAG+TGG | + | tig0029236:3114-3133 | None:intergenic | 30.0% | |
| ! | TTACAACTCAATTGACTTTG+AGG | - | tig0029236:3224-3243 | Msa1441210:intron | 30.0% |
| TATAATTTAACCTGAGATGC+GGG | + | tig0029236:3306-3325 | None:intergenic | 30.0% | |
| TAACTCAGTATTTACGAAAC+TGG | - | tig0029236:3364-3383 | Msa1441210:intron | 30.0% | |
| ! | ATTTACGAAACTGGCTTATA+AGG | - | tig0029236:3373-3392 | Msa1441210:CDS | 30.0% |
| GCTCTTTATTGGAATTGTAT+TGG | + | tig0029236:3692-3711 | None:intergenic | 30.0% | |
| TGGTTAAAATTTGAATCGGT+CGG | + | tig0029236:3790-3809 | None:intergenic | 30.0% | |
| ATAATATGCATAGCAGTTCA+AGG | - | tig0029236:3879-3898 | Msa1441210:CDS | 30.0% | |
| !! | GACTGGTTTCAATGATATAA+TGG | - | tig0029236:4026-4045 | Msa1441210:intron | 30.0% |
| !! | ATATAATGGATGAAACTTGC+TGG | - | tig0029236:4040-4059 | Msa1441210:intron | 30.0% |
| ATATGCTAAAGAATCGTTGA+GGG | + | tig0029236:4070-4089 | None:intergenic | 30.0% | |
| AATATGCTAAAGAATCGTTG+AGG | + | tig0029236:4071-4090 | None:intergenic | 30.0% | |
| TTACCTTAAGATAAGCATCA+TGG | + | tig0029236:4098-4117 | None:intergenic | 30.0% | |
| ! | TCTTATCTCTTTTCAATTGG+TGG | - | tig0029236:4258-4277 | Msa1441210:intron | 30.0% |
| CATATCACAGAAAATGCAAA+TGG | - | tig0029236:4476-4495 | Msa1441210:intron | 30.0% | |
| GGAGTTTGTACAAAAATTCT+TGG | - | tig0029236:4511-4530 | Msa1441210:intron | 30.0% | |
| !! | GAAAGTACTTCATCAATCAA+TGG | - | tig0029236:4590-4609 | Msa1441210:intron | 30.0% |
| GCAATCATTAAACTGAATTC+TGG | + | tig0029236:4683-4702 | None:intergenic | 30.0% | |
| ! | ATATGACGCTAAGATGATTT+TGG | - | tig0029236:4937-4956 | Msa1441210:CDS | 30.0% |
| CAACTAGATATCCAAACACA+TGG | + | tig0029236:3330-3349 | None:intergenic | 35.0% | |
| TAGGGCTATCAAAAATCCAT+TGG | + | tig0029236:3465-3484 | None:intergenic | 35.0% | |
| ! | CTCACAAAATCAGCTTTGTA+AGG | + | tig0029236:3531-3550 | None:intergenic | 35.0% |
| !! | CTTACAAAGCTGATTTTGTG+AGG | - | tig0029236:3529-3548 | Msa1441210:CDS | 35.0% |
| AACAAGTGGTTCAACTTCAA+CGG | + | tig0029236:3609-3628 | None:intergenic | 35.0% | |
| !! | ACCACTTGTTATCAAACAAG+AGG | - | tig0029236:3619-3638 | Msa1441210:intron | 35.0% |
| ! | TCCTCTTGTTTGATAACAAG+TGG | + | tig0029236:3623-3642 | None:intergenic | 35.0% |
| !! | ACTTGTTATCAAACAAGAGG+AGG | - | tig0029236:3622-3641 | Msa1441210:intron | 35.0% |
| ! | CTTGTTATCAAACAAGAGGA+GGG | - | tig0029236:3623-3642 | Msa1441210:intron | 35.0% |
| TATTGGAGTCTCATATTGCT+CGG | + | tig0029236:3675-3694 | None:intergenic | 35.0% | |
| TTAAACGTGGAGCTCTTTAT+TGG | + | tig0029236:3703-3722 | None:intergenic | 35.0% | |
| AGACCTTACATCATTAAACG+TGG | + | tig0029236:3716-3735 | None:intergenic | 35.0% | |
| TGCTATGTATTGTAAGAGAG+CGG | - | tig0029236:3939-3958 | Msa1441210:CDS | 35.0% | |
| CTTCTCCAATGAAAGATGAT+GGG | - | tig0029236:4004-4023 | Msa1441210:intron | 35.0% | |
| TATGCTAAAGAATCGTTGAG+GGG | + | tig0029236:4069-4088 | None:intergenic | 35.0% | |
| GTACCATGATGCTTATCTTA+AGG | - | tig0029236:4092-4111 | Msa1441210:intron | 35.0% | |
| TTATTCAAAGACAGTGACAG+AGG | - | tig0029236:4326-4345 | Msa1441210:intron | 35.0% | |
| AGGAATATATGTTGAGCTGT+GGG | - | tig0029236:4346-4365 | Msa1441210:intron | 35.0% | |
| ACATCATCAACATGTACAAG+AGG | + | tig0029236:4545-4564 | None:intergenic | 35.0% | |
| TGAAGCTCATATATTCTGCA+TGG | - | tig0029236:4568-4587 | Msa1441210:intron | 35.0% | |
| GTACTTCATCAATCAATGGA+CGG | - | tig0029236:4594-4613 | Msa1441210:intron | 35.0% | |
| CATGTATGAGAAGAAGGAAT+AGG | + | tig0029236:4726-4745 | None:intergenic | 35.0% | |
| AATGTGCATGTATGAGAAGA+AGG | + | tig0029236:4732-4751 | None:intergenic | 35.0% | |
| !! | CATACATGCACATTTTTCAG+TGG | - | tig0029236:4738-4757 | Msa1441210:CDS | 35.0% |
| !! | ATGCACATTTTTCAGTGGAT+TGG | - | tig0029236:4743-4762 | Msa1441210:CDS | 35.0% |
| CACATTACAGATATGCAGAT+AGG | - | tig0029236:4855-4874 | Msa1441210:intron | 35.0% | |
| TCAACAAAGCTATGTGACAA+AGG | - | tig0029236:4902-4921 | Msa1441210:CDS | 35.0% | |
| TGTCAAATGTGCTAGAAGAA+TGG | - | tig0029236:4967-4986 | Msa1441210:CDS | 35.0% | |
| GTCAAATGTGCTAGAAGAAT+GGG | - | tig0029236:4968-4987 | Msa1441210:CDS | 35.0% | |
| CAACTAGATATCCAAACACA+TGG | + | tig0029236:3330-3349 | None:intergenic | 35.0% | |
| TAGGGCTATCAAAAATCCAT+TGG | + | tig0029236:3465-3484 | None:intergenic | 35.0% | |
| ! | CTCACAAAATCAGCTTTGTA+AGG | + | tig0029236:3531-3550 | None:intergenic | 35.0% |
| !! | CTTACAAAGCTGATTTTGTG+AGG | - | tig0029236:3529-3548 | Msa1441210:CDS | 35.0% |
| AACAAGTGGTTCAACTTCAA+CGG | + | tig0029236:3609-3628 | None:intergenic | 35.0% | |
| !! | ACCACTTGTTATCAAACAAG+AGG | - | tig0029236:3619-3638 | Msa1441210:intron | 35.0% |
| ! | TCCTCTTGTTTGATAACAAG+TGG | + | tig0029236:3623-3642 | None:intergenic | 35.0% |
| !! | ACTTGTTATCAAACAAGAGG+AGG | - | tig0029236:3622-3641 | Msa1441210:intron | 35.0% |
| ! | CTTGTTATCAAACAAGAGGA+GGG | - | tig0029236:3623-3642 | Msa1441210:intron | 35.0% |
| TATTGGAGTCTCATATTGCT+CGG | + | tig0029236:3675-3694 | None:intergenic | 35.0% | |
| TTAAACGTGGAGCTCTTTAT+TGG | + | tig0029236:3703-3722 | None:intergenic | 35.0% | |
| AGACCTTACATCATTAAACG+TGG | + | tig0029236:3716-3735 | None:intergenic | 35.0% | |
| TGCTATGTATTGTAAGAGAG+CGG | - | tig0029236:3939-3958 | Msa1441210:CDS | 35.0% | |
| CTTCTCCAATGAAAGATGAT+GGG | - | tig0029236:4004-4023 | Msa1441210:intron | 35.0% | |
| TATGCTAAAGAATCGTTGAG+GGG | + | tig0029236:4069-4088 | None:intergenic | 35.0% | |
| GTACCATGATGCTTATCTTA+AGG | - | tig0029236:4092-4111 | Msa1441210:intron | 35.0% | |
| TTATTCAAAGACAGTGACAG+AGG | - | tig0029236:4326-4345 | Msa1441210:intron | 35.0% | |
| AGGAATATATGTTGAGCTGT+GGG | - | tig0029236:4346-4365 | Msa1441210:intron | 35.0% | |
| ACATCATCAACATGTACAAG+AGG | + | tig0029236:4545-4564 | None:intergenic | 35.0% | |
| TGAAGCTCATATATTCTGCA+TGG | - | tig0029236:4568-4587 | Msa1441210:intron | 35.0% | |
| GTACTTCATCAATCAATGGA+CGG | - | tig0029236:4594-4613 | Msa1441210:intron | 35.0% | |
| CATGTATGAGAAGAAGGAAT+AGG | + | tig0029236:4726-4745 | None:intergenic | 35.0% | |
| AATGTGCATGTATGAGAAGA+AGG | + | tig0029236:4732-4751 | None:intergenic | 35.0% | |
| !! | CATACATGCACATTTTTCAG+TGG | - | tig0029236:4738-4757 | Msa1441210:CDS | 35.0% |
| !! | ATGCACATTTTTCAGTGGAT+TGG | - | tig0029236:4743-4762 | Msa1441210:CDS | 35.0% |
| CACATTACAGATATGCAGAT+AGG | - | tig0029236:4855-4874 | Msa1441210:intron | 35.0% | |
| TCAACAAAGCTATGTGACAA+AGG | - | tig0029236:4902-4921 | Msa1441210:CDS | 35.0% | |
| TGTCAAATGTGCTAGAAGAA+TGG | - | tig0029236:4967-4986 | Msa1441210:CDS | 35.0% | |
| GTCAAATGTGCTAGAAGAAT+GGG | - | tig0029236:4968-4987 | Msa1441210:CDS | 35.0% | |
| GCAAATCACACACTTTACAG+AGG | - | tig0029236:3128-3147 | Msa1441210:intron | 40.0% | |
| CTTTACAGAGGATGAGTCTA+AGG | - | tig0029236:3140-3159 | Msa1441210:intron | 40.0% | |
| TCCACAATCACAAGACAAAC+TGG | - | tig0029236:3182-3201 | Msa1441210:intron | 40.0% | |
| ACCAGTTTGTCTTGTGATTG+TGG | + | tig0029236:3186-3205 | None:intergenic | 40.0% | |
| !! | TGACTTTGAGGCTGCAATTA+AGG | - | tig0029236:3236-3255 | Msa1441210:intron | 40.0% |
| !! | GACTTTGAGGCTGCAATTAA+GGG | - | tig0029236:3237-3256 | Msa1441210:intron | 40.0% |
| AGACTGTGTCCAATAGAAAG+TGG | - | tig0029236:3438-3457 | Msa1441210:intron | 40.0% | |
| TCCAATAGAAAGTGGTCCAA+TGG | - | tig0029236:3446-3465 | Msa1441210:intron | 40.0% | |
| TCCATTGGACCACTTTCTAT+TGG | + | tig0029236:3450-3469 | None:intergenic | 40.0% | |
| ATTGGAGTCTCATATTGCTC+GGG | + | tig0029236:3674-3693 | None:intergenic | 40.0% | |
| GCTCCACGTTTAATGATGTA+AGG | - | tig0029236:3710-3729 | Msa1441210:intron | 40.0% | |
| GCTATGTATTGTAAGAGAGC+GGG | - | tig0029236:3940-3959 | Msa1441210:CDS | 40.0% | |
| AGAAGCAGATACAACAGATC+CGG | + | tig0029236:3989-4008 | None:intergenic | 40.0% | |
| GCTTCTCCAATGAAAGATGA+TGG | - | tig0029236:4003-4022 | Msa1441210:intron | 40.0% | |
| GAGGAATATATGTTGAGCTG+TGG | - | tig0029236:4345-4364 | Msa1441210:intron | 40.0% | |
| AGCTGTGGGAACAATGAAAA+TGG | - | tig0029236:4360-4379 | Msa1441210:intron | 40.0% | |
| TGTGGGAACAATGAAAATGG+TGG | - | tig0029236:4363-4382 | Msa1441210:intron | 40.0% | |
| ! | GGAACAATGAAAATGGTGGA+GGG | - | tig0029236:4367-4386 | Msa1441210:intron | 40.0% |
| ATACAAATTGCAACGCTACC+GGG | + | tig0029236:4452-4471 | None:intergenic | 40.0% | |
| GATACAAATTGCAACGCTAC+CGG | + | tig0029236:4453-4472 | None:intergenic | 40.0% | |
| ATATGCAGATAGGCCAAAGA+AGG | - | tig0029236:4865-4884 | Msa1441210:intron | 40.0% | |
| GCCAAAGAAGGATATGAAGT+GGG | - | tig0029236:4877-4896 | Msa1441210:CDS | 40.0% | |
| CCAAAGAAGGATATGAAGTG+GGG | - | tig0029236:4878-4897 | Msa1441210:CDS | 40.0% | |
| CAAAGAAGGATATGAAGTGG+GGG | - | tig0029236:4879-4898 | Msa1441210:CDS | 40.0% | |
| TAGAAGAATGGGTGATCTCT+AGG | - | tig0029236:4979-4998 | Msa1441210:exon | 40.0% | |
| AGAAGAATGGGTGATCTCTA+GGG | - | tig0029236:4980-4999 | Msa1441210:exon | 40.0% | |
| GCAAATCACACACTTTACAG+AGG | - | tig0029236:3128-3147 | Msa1441210:intron | 40.0% | |
| CTTTACAGAGGATGAGTCTA+AGG | - | tig0029236:3140-3159 | Msa1441210:intron | 40.0% | |
| TCCACAATCACAAGACAAAC+TGG | - | tig0029236:3182-3201 | Msa1441210:intron | 40.0% | |
| ACCAGTTTGTCTTGTGATTG+TGG | + | tig0029236:3186-3205 | None:intergenic | 40.0% | |
| !! | TGACTTTGAGGCTGCAATTA+AGG | - | tig0029236:3236-3255 | Msa1441210:intron | 40.0% |
| !! | GACTTTGAGGCTGCAATTAA+GGG | - | tig0029236:3237-3256 | Msa1441210:intron | 40.0% |
| AGACTGTGTCCAATAGAAAG+TGG | - | tig0029236:3438-3457 | Msa1441210:intron | 40.0% | |
| TCCAATAGAAAGTGGTCCAA+TGG | - | tig0029236:3446-3465 | Msa1441210:intron | 40.0% | |
| TCCATTGGACCACTTTCTAT+TGG | + | tig0029236:3450-3469 | None:intergenic | 40.0% | |
| ATTGGAGTCTCATATTGCTC+GGG | + | tig0029236:3674-3693 | None:intergenic | 40.0% | |
| GCTCCACGTTTAATGATGTA+AGG | - | tig0029236:3710-3729 | Msa1441210:intron | 40.0% | |
| GCTATGTATTGTAAGAGAGC+GGG | - | tig0029236:3940-3959 | Msa1441210:CDS | 40.0% | |
| AGAAGCAGATACAACAGATC+CGG | + | tig0029236:3989-4008 | None:intergenic | 40.0% | |
| GCTTCTCCAATGAAAGATGA+TGG | - | tig0029236:4003-4022 | Msa1441210:intron | 40.0% | |
| GAGGAATATATGTTGAGCTG+TGG | - | tig0029236:4345-4364 | Msa1441210:intron | 40.0% | |
| AGCTGTGGGAACAATGAAAA+TGG | - | tig0029236:4360-4379 | Msa1441210:intron | 40.0% | |
| TGTGGGAACAATGAAAATGG+TGG | - | tig0029236:4363-4382 | Msa1441210:intron | 40.0% | |
| ! | GGAACAATGAAAATGGTGGA+GGG | - | tig0029236:4367-4386 | Msa1441210:intron | 40.0% |
| ATACAAATTGCAACGCTACC+GGG | + | tig0029236:4452-4471 | None:intergenic | 40.0% | |
| GATACAAATTGCAACGCTAC+CGG | + | tig0029236:4453-4472 | None:intergenic | 40.0% | |
| ATATGCAGATAGGCCAAAGA+AGG | - | tig0029236:4865-4884 | Msa1441210:intron | 40.0% | |
| GCCAAAGAAGGATATGAAGT+GGG | - | tig0029236:4877-4896 | Msa1441210:CDS | 40.0% | |
| CCAAAGAAGGATATGAAGTG+GGG | - | tig0029236:4878-4897 | Msa1441210:CDS | 40.0% | |
| CAAAGAAGGATATGAAGTGG+GGG | - | tig0029236:4879-4898 | Msa1441210:CDS | 40.0% | |
| !! | GGTGATGGAAGCAATGTGTA+AGG | - | tig0029236:2917-2936 | Msa1441210:CDS | 45.0% |
| ATGTGTAAGGTATGCGTCAC+AGG | - | tig0029236:2930-2949 | Msa1441210:CDS | 45.0% | |
| ! | TCAAGTCTCTGAGAGTTGCA+TGG | + | tig0029236:3016-3035 | None:intergenic | 45.0% |
| CTTCCACCACCCACTAATAA+AGG | - | tig0029236:3101-3120 | Msa1441210:intron | 45.0% | |
| ! | AAGCCTTTATTAGTGGGTGG+TGG | + | tig0029236:3107-3126 | None:intergenic | 45.0% |
| GCAAAGCCTTTATTAGTGGG+TGG | + | tig0029236:3110-3129 | None:intergenic | 45.0% | |
| TACAGAGGATGAGTCTAAGG+TGG | - | tig0029236:3143-3162 | Msa1441210:intron | 45.0% | |
| GGTTCAACTTCAACGGATCT+TGG | + | tig0029236:3602-3621 | None:intergenic | 45.0% | |
| ! | TCTCATATTGCTCGGGTTGT+TGG | + | tig0029236:3667-3686 | None:intergenic | 45.0% |
| !! | ATTACTGAAGCATCGCTTGC+TGG | - | tig0029236:3904-3923 | Msa1441210:CDS | 45.0% |
| !! | TTACTGAAGCATCGCTTGCT+GGG | - | tig0029236:3905-3924 | Msa1441210:CDS | 45.0% |
| GTATTGTAAGAGAGCGGGAA+CGG | - | tig0029236:3945-3964 | Msa1441210:CDS | 45.0% | |
| ! | GTGAAGCGTCTCATTTACAC+CGG | - | tig0029236:3967-3986 | Msa1441210:CDS | 45.0% |
| CCAGTCCCATCATCTTTCAT+TGG | + | tig0029236:4012-4031 | None:intergenic | 45.0% | |
| !! | CCAATGAAAGATGATGGGAC+TGG | - | tig0029236:4009-4028 | Msa1441210:intron | 45.0% |
| GGGAACAATGAAAATGGTGG+AGG | - | tig0029236:4366-4385 | Msa1441210:intron | 45.0% | |
| ! | CAATGAAAATGGTGGAGGGT+TGG | - | tig0029236:4371-4390 | Msa1441210:intron | 45.0% |
| AGGTGGTAAGTCTCCTATGT+GGG | - | tig0029236:4394-4413 | Msa1441210:intron | 45.0% | |
| ! | AAGTCTCCTATGTGGGTTGT+AGG | - | tig0029236:4401-4420 | Msa1441210:intron | 45.0% |
| ACTCTTCAATCCTTCACACC+CGG | - | tig0029236:4431-4450 | Msa1441210:intron | 45.0% | |
| TGCAAATGGACGCAAATCAC+TGG | - | tig0029236:4490-4509 | Msa1441210:intron | 45.0% | |
| GGCCAAAGAAGGATATGAAG+TGG | - | tig0029236:4876-4895 | Msa1441210:intron | 45.0% | |
| CCCCACTTCATATCCTTCTT+TGG | + | tig0029236:4881-4900 | None:intergenic | 45.0% | |
| GAAGAATGGGTGATCTCTAG+GGG | - | tig0029236:4981-5000 | Msa1441210:exon | 45.0% | |
| !! | GGTGATGGAAGCAATGTGTA+AGG | - | tig0029236:2917-2936 | Msa1441210:CDS | 45.0% |
| ATGTGTAAGGTATGCGTCAC+AGG | - | tig0029236:2930-2949 | Msa1441210:CDS | 45.0% | |
| ! | TCAAGTCTCTGAGAGTTGCA+TGG | + | tig0029236:3016-3035 | None:intergenic | 45.0% |
| CTTCCACCACCCACTAATAA+AGG | - | tig0029236:3101-3120 | Msa1441210:intron | 45.0% | |
| ! | AAGCCTTTATTAGTGGGTGG+TGG | + | tig0029236:3107-3126 | None:intergenic | 45.0% |
| GCAAAGCCTTTATTAGTGGG+TGG | + | tig0029236:3110-3129 | None:intergenic | 45.0% | |
| TACAGAGGATGAGTCTAAGG+TGG | - | tig0029236:3143-3162 | Msa1441210:intron | 45.0% | |
| GGTTCAACTTCAACGGATCT+TGG | + | tig0029236:3602-3621 | None:intergenic | 45.0% | |
| ! | TCTCATATTGCTCGGGTTGT+TGG | + | tig0029236:3667-3686 | None:intergenic | 45.0% |
| !! | ATTACTGAAGCATCGCTTGC+TGG | - | tig0029236:3904-3923 | Msa1441210:CDS | 45.0% |
| !! | TTACTGAAGCATCGCTTGCT+GGG | - | tig0029236:3905-3924 | Msa1441210:CDS | 45.0% |
| GTATTGTAAGAGAGCGGGAA+CGG | - | tig0029236:3945-3964 | Msa1441210:CDS | 45.0% | |
| ! | GTGAAGCGTCTCATTTACAC+CGG | - | tig0029236:3967-3986 | Msa1441210:CDS | 45.0% |
| CCAGTCCCATCATCTTTCAT+TGG | + | tig0029236:4012-4031 | None:intergenic | 45.0% | |
| !! | CCAATGAAAGATGATGGGAC+TGG | - | tig0029236:4009-4028 | Msa1441210:intron | 45.0% |
| GGGAACAATGAAAATGGTGG+AGG | - | tig0029236:4366-4385 | Msa1441210:intron | 45.0% | |
| ! | CAATGAAAATGGTGGAGGGT+TGG | - | tig0029236:4371-4390 | Msa1441210:intron | 45.0% |
| AGGTGGTAAGTCTCCTATGT+GGG | - | tig0029236:4394-4413 | Msa1441210:intron | 45.0% | |
| ! | AAGTCTCCTATGTGGGTTGT+AGG | - | tig0029236:4401-4420 | Msa1441210:intron | 45.0% |
| ACTCTTCAATCCTTCACACC+CGG | - | tig0029236:4431-4450 | Msa1441210:intron | 45.0% | |
| TGCAAATGGACGCAAATCAC+TGG | - | tig0029236:4490-4509 | Msa1441210:intron | 45.0% | |
| GGCCAAAGAAGGATATGAAG+TGG | - | tig0029236:4876-4895 | Msa1441210:intron | 45.0% | |
| CCCCACTTCATATCCTTCTT+TGG | + | tig0029236:4881-4900 | None:intergenic | 45.0% | |
| GATGCGGGTTCATGGATCAA+GGG | + | tig0029236:3291-3310 | None:intergenic | 50.0% | |
| AGATGCGGGTTCATGGATCA+AGG | + | tig0029236:3292-3311 | None:intergenic | 50.0% | |
| TAACCTGAGATGCGGGTTCA+TGG | + | tig0029236:3299-3318 | None:intergenic | 50.0% | |
| ! | TGAAAATGGTGGAGGGTTGG+AGG | - | tig0029236:4374-4393 | Msa1441210:intron | 50.0% |
| GAGGTGGTAAGTCTCCTATG+TGG | - | tig0029236:4393-4412 | Msa1441210:intron | 50.0% | |
| ! | TCTCCTATGTGGGTTGTAGG+AGG | - | tig0029236:4404-4423 | Msa1441210:intron | 50.0% |
| TCACCTCCTACAACCCACAT+AGG | + | tig0029236:4410-4429 | None:intergenic | 50.0% | |
| GATGCGGGTTCATGGATCAA+GGG | + | tig0029236:3291-3310 | None:intergenic | 50.0% | |
| AGATGCGGGTTCATGGATCA+AGG | + | tig0029236:3292-3311 | None:intergenic | 50.0% | |
| TAACCTGAGATGCGGGTTCA+TGG | + | tig0029236:3299-3318 | None:intergenic | 50.0% | |
| ! | TGAAAATGGTGGAGGGTTGG+AGG | - | tig0029236:4374-4393 | Msa1441210:intron | 50.0% |
| GAGGTGGTAAGTCTCCTATG+TGG | - | tig0029236:4393-4412 | Msa1441210:intron | 50.0% | |
| ! | TCTCCTATGTGGGTTGTAGG+AGG | - | tig0029236:4404-4423 | Msa1441210:intron | 50.0% |
| TCACCTCCTACAACCCACAT+AGG | + | tig0029236:4410-4429 | None:intergenic | 50.0% | |
| GTATGCGTCACAGGTGCTTC+TGG | - | tig0029236:2939-2958 | Msa1441210:CDS | 55.0% | |
| GGGTTCATGGATCAAGGGTG+TGG | + | tig0029236:3286-3305 | None:intergenic | 55.0% | |
| GATCCATGAACCCGCATCTC+AGG | - | tig0029236:3293-3312 | Msa1441210:intron | 55.0% | |
| ! | AAATGGTGGAGGGTTGGAGG+TGG | - | tig0029236:4377-4396 | Msa1441210:intron | 55.0% |
| GTATGCGTCACAGGTGCTTC+TGG | - | tig0029236:2939-2958 | Msa1441210:CDS | 55.0% | |
| GGGTTCATGGATCAAGGGTG+TGG | + | tig0029236:3286-3305 | None:intergenic | 55.0% | |
| GATCCATGAACCCGCATCTC+AGG | - | tig0029236:3293-3312 | Msa1441210:intron | 55.0% | |
| ! | AAATGGTGGAGGGTTGGAGG+TGG | - | tig0029236:4377-4396 | Msa1441210:intron | 55.0% |
| TGCAACGCTACCGGGTGTGA+AGG | + | tig0029236:4444-4463 | None:intergenic | 60.0% | |
| TGCAACGCTACCGGGTGTGA+AGG | + | tig0029236:4444-4463 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0029236 | gene | 2912 | 5000 | 2912 | ID=Msa1441210;Name=Msa1441210 |
| tig0029236 | mRNA | 2912 | 5000 | 2912 | ID=Msa1441210-mRNA-1;Parent=Msa1441210;Name=Msa1441210-mRNA-1;_AED=0.21;_eAED=0.21;_QI=9|0.6|0.33|1|1|1|6|0|259 |
| tig0029236 | exon | 2912 | 3047 | 2912 | ID=Msa1441210-mRNA-1:exon:12711;Parent=Msa1441210-mRNA-1 |
| tig0029236 | exon | 3365 | 3426 | 3365 | ID=Msa1441210-mRNA-1:exon:12710;Parent=Msa1441210-mRNA-1 |
| tig0029236 | exon | 3514 | 3594 | 3514 | ID=Msa1441210-mRNA-1:exon:12709;Parent=Msa1441210-mRNA-1 |
| tig0029236 | exon | 3799 | 4017 | 3799 | ID=Msa1441210-mRNA-1:exon:12708;Parent=Msa1441210-mRNA-1 |
| tig0029236 | exon | 4598 | 4764 | 4598 | ID=Msa1441210-mRNA-1:exon:12707;Parent=Msa1441210-mRNA-1 |
| tig0029236 | exon | 4877 | 5000 | 4877 | ID=Msa1441210-mRNA-1:exon:12706;Parent=Msa1441210-mRNA-1 |
| tig0029236 | five_prime_UTR | 4992 | 5000 | 4992 | ID=Msa1441210-mRNA-1:five_prime_utr;Parent=Msa1441210-mRNA-1 |
| tig0029236 | CDS | 4877 | 4991 | 4877 | ID=Msa1441210-mRNA-1:cds;Parent=Msa1441210-mRNA-1 |
| tig0029236 | CDS | 4598 | 4764 | 4598 | ID=Msa1441210-mRNA-1:cds;Parent=Msa1441210-mRNA-1 |
| tig0029236 | CDS | 3799 | 4017 | 3799 | ID=Msa1441210-mRNA-1:cds;Parent=Msa1441210-mRNA-1 |
| tig0029236 | CDS | 3514 | 3594 | 3514 | ID=Msa1441210-mRNA-1:cds;Parent=Msa1441210-mRNA-1 |
| tig0029236 | CDS | 3365 | 3426 | 3365 | ID=Msa1441210-mRNA-1:cds;Parent=Msa1441210-mRNA-1 |
| tig0029236 | CDS | 2912 | 3047 | 2912 | ID=Msa1441210-mRNA-1:cds;Parent=Msa1441210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
