Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1427790 | XP_039683725.1 | 92.742 | 248 | 18 | 0 | 1 | 248 | 1 | 248 | 7.94e-169 | 480 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1427790 | sp|Q5XLY0|ANR_GINBI | 34.711 | 242 | 150 | 4 | 7 | 248 | 15 | 248 | 1.74e-35 | 133 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1427790 | G7L426 | 92.742 | 248 | 18 | 0 | 1 | 248 | 1 | 248 | 3.79e-169 | 480 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1427790 | Msa1441210 | 0.941269 | 5.581008e-101 | -8.615850e-47 |
| Msa0437340 | Msa1427790 | 0.952759 | 1.210627e-110 | -8.615850e-47 |
| Msa1037720 | Msa1427790 | 0.861568 | 9.364365e-64 | -8.615850e-47 |
| Msa1130340 | Msa1427790 | 0.933434 | 1.887673e-95 | -8.615850e-47 |
| Msa1130640 | Msa1427790 | 0.947415 | 7.030756e-106 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1427790 | MtrunA17_Chr7g0275521 | 92.742 | 248 | 18 | 0 | 1 | 248 | 1 | 248 | 9.54e-172 | 478 |
| Msa1427790 | MtrunA17_Chr2g0281991 | 57.600 | 250 | 102 | 3 | 1 | 248 | 2 | 249 | 6.81e-98 | 291 |
| Msa1427790 | MtrunA17_Chr2g0282001 | 57.600 | 250 | 102 | 3 | 1 | 248 | 1 | 248 | 2.08e-96 | 287 |
| Msa1427790 | MtrunA17_Chr2g0282011 | 58.000 | 250 | 101 | 3 | 1 | 248 | 2 | 249 | 2.11e-90 | 272 |
| Msa1427790 | MtrunA17_Chr1g0155411 | 35.484 | 217 | 130 | 4 | 7 | 223 | 8 | 214 | 1.42e-33 | 125 |
| Msa1427790 | MtrunA17_Chr7g0245731 | 33.200 | 250 | 144 | 6 | 2 | 248 | 53 | 282 | 5.62e-33 | 124 |
| Msa1427790 | MtrunA17_Chr7g0245741 | 33.600 | 250 | 143 | 6 | 2 | 248 | 3 | 232 | 1.88e-32 | 122 |
| Msa1427790 | MtrunA17_Chr4g0042101 | 34.000 | 250 | 148 | 9 | 6 | 248 | 23 | 262 | 3.88e-32 | 121 |
| Msa1427790 | MtrunA17_Chr7g0245641 | 37.500 | 216 | 123 | 6 | 2 | 215 | 40 | 245 | 5.90e-32 | 121 |
| Msa1427790 | MtrunA17_Chr7g0245671 | 34.426 | 244 | 144 | 7 | 6 | 248 | 7 | 235 | 1.67e-31 | 119 |
| Msa1427790 | MtrunA17_Chr7g0245691 | 35.341 | 249 | 144 | 8 | 2 | 248 | 3 | 236 | 4.52e-31 | 118 |
| Msa1427790 | MtrunA17_Chr4g0048961 | 32.932 | 249 | 146 | 7 | 6 | 248 | 13 | 246 | 1.58e-30 | 117 |
| Msa1427790 | MtrunA17_Chr1g0155431 | 32.877 | 219 | 137 | 4 | 7 | 225 | 8 | 216 | 1.72e-30 | 117 |
| Msa1427790 | MtrunA17_Chr7g0245631 | 31.452 | 248 | 151 | 7 | 2 | 248 | 3 | 232 | 2.79e-27 | 108 |
| Msa1427790 | MtrunA17_Chr4g0010991 | 35.556 | 180 | 107 | 4 | 7 | 184 | 8 | 180 | 8.52e-27 | 107 |
| Msa1427790 | MtrunA17_Chr3g0077221 | 31.336 | 217 | 139 | 4 | 7 | 223 | 10 | 216 | 8.09e-26 | 104 |
| Msa1427790 | MtrunA17_Chr4g0039321 | 37.419 | 155 | 82 | 4 | 7 | 154 | 9 | 155 | 1.07e-25 | 103 |
| Msa1427790 | MtrunA17_Chr3g0077231 | 32.258 | 217 | 137 | 5 | 7 | 223 | 6 | 212 | 5.17e-25 | 102 |
| Msa1427790 | MtrunA17_Chr3g0106111 | 38.926 | 149 | 87 | 3 | 7 | 154 | 5 | 150 | 1.09e-24 | 100 |
| Msa1427790 | MtrunA17_Chr8g0364051 | 30.290 | 241 | 137 | 8 | 7 | 240 | 8 | 224 | 3.77e-24 | 99.8 |
| Msa1427790 | MtrunA17_Chr4g0039311 | 34.286 | 175 | 102 | 6 | 7 | 178 | 11 | 175 | 1.16e-23 | 98.2 |
| Msa1427790 | MtrunA17_Chr4g0002661 | 31.579 | 266 | 161 | 9 | 6 | 269 | 12 | 258 | 1.51e-23 | 97.8 |
| Msa1427790 | MtrunA17_Chr2g0331211 | 33.010 | 206 | 124 | 6 | 6 | 209 | 4 | 197 | 3.59e-23 | 97.1 |
| Msa1427790 | MtrunA17_Chr8g0363831 | 33.632 | 223 | 126 | 9 | 7 | 223 | 9 | 215 | 1.04e-22 | 95.5 |
| Msa1427790 | MtrunA17_Chr2g0291541 | 33.333 | 216 | 125 | 8 | 7 | 217 | 10 | 211 | 2.11e-22 | 95.1 |
| Msa1427790 | MtrunA17_Chr5g0431311 | 32.178 | 202 | 124 | 6 | 7 | 207 | 5 | 194 | 2.60e-22 | 94.4 |
| Msa1427790 | MtrunA17_Chr4g0002961 | 31.250 | 224 | 132 | 7 | 6 | 224 | 12 | 218 | 1.66e-20 | 89.7 |
| Msa1427790 | MtrunA17_Chr4g0001321 | 31.792 | 173 | 102 | 6 | 7 | 178 | 17 | 174 | 2.61e-19 | 86.3 |
| Msa1427790 | MtrunA17_Chr2g0333781 | 32.653 | 147 | 91 | 4 | 7 | 153 | 20 | 158 | 2.78e-19 | 86.3 |
| Msa1427790 | MtrunA17_Chr7g0245711 | 29.952 | 207 | 123 | 5 | 44 | 248 | 8 | 194 | 1.18e-18 | 84.0 |
| Msa1427790 | MtrunA17_Chr5g0423551 | 27.642 | 246 | 157 | 9 | 4 | 248 | 1 | 226 | 2.48e-16 | 77.8 |
| Msa1427790 | MtrunA17_Chr5g0411071 | 23.350 | 197 | 134 | 6 | 7 | 202 | 12 | 192 | 1.01e-11 | 64.3 |
| Msa1427790 | MtrunA17_Chr3g0133771 | 27.459 | 244 | 124 | 12 | 4 | 243 | 1 | 195 | 8.85e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1427790 | AT4G27250.1 | 34.940 | 249 | 144 | 6 | 8 | 248 | 14 | 252 | 1.82e-37 | 136 |
| Msa1427790 | AT4G27250.2 | 34.538 | 249 | 135 | 7 | 8 | 248 | 14 | 242 | 8.12e-36 | 131 |
| Msa1427790 | AT1G09510.1 | 34.389 | 221 | 135 | 3 | 7 | 227 | 8 | 218 | 1.75e-31 | 119 |
| Msa1427790 | AT1G09490.1 | 32.653 | 245 | 146 | 6 | 7 | 247 | 8 | 237 | 2.47e-31 | 119 |
| Msa1427790 | AT1G09500.3 | 36.279 | 215 | 124 | 6 | 7 | 219 | 8 | 211 | 3.95e-31 | 117 |
| Msa1427790 | AT1G09500.1 | 36.279 | 215 | 124 | 6 | 7 | 219 | 8 | 211 | 1.25e-30 | 117 |
| Msa1427790 | AT1G09480.2 | 31.818 | 242 | 152 | 5 | 7 | 247 | 8 | 237 | 6.03e-30 | 115 |
| Msa1427790 | AT1G09480.1 | 31.818 | 242 | 152 | 5 | 7 | 247 | 55 | 284 | 1.33e-29 | 115 |
| Msa1427790 | AT1G61720.1 | 33.197 | 244 | 152 | 6 | 6 | 248 | 12 | 245 | 2.53e-29 | 114 |
| Msa1427790 | AT1G66800.1 | 34.008 | 247 | 136 | 10 | 7 | 247 | 8 | 233 | 2.75e-29 | 113 |
| Msa1427790 | AT2G45400.4 | 33.945 | 218 | 137 | 4 | 7 | 222 | 40 | 252 | 1.36e-27 | 107 |
| Msa1427790 | AT5G19440.1 | 32.609 | 230 | 133 | 6 | 7 | 232 | 10 | 221 | 1.56e-27 | 109 |
| Msa1427790 | AT2G45400.2 | 33.937 | 221 | 139 | 4 | 7 | 225 | 40 | 255 | 3.54e-27 | 108 |
| Msa1427790 | AT1G51410.1 | 34.259 | 216 | 132 | 4 | 7 | 222 | 9 | 214 | 3.57e-27 | 108 |
| Msa1427790 | AT5G42800.1 | 31.507 | 219 | 140 | 4 | 7 | 225 | 8 | 216 | 3.68e-27 | 109 |
| Msa1427790 | AT2G45400.1 | 32.653 | 245 | 149 | 6 | 7 | 248 | 40 | 271 | 5.86e-27 | 108 |
| Msa1427790 | AT4G35420.1 | 31.250 | 208 | 128 | 6 | 2 | 207 | 3 | 197 | 3.28e-24 | 100 |
| Msa1427790 | AT5G58490.1 | 32.178 | 202 | 124 | 6 | 7 | 207 | 9 | 198 | 6.30e-23 | 96.7 |
| Msa1427790 | AT2G33590.1 | 34.404 | 218 | 107 | 8 | 6 | 211 | 8 | 201 | 9.90e-23 | 95.9 |
| Msa1427790 | AT1G76470.1 | 32.864 | 213 | 126 | 8 | 1 | 209 | 1 | 200 | 1.37e-21 | 92.8 |
| Msa1427790 | AT1G80820.2 | 30.350 | 257 | 145 | 9 | 7 | 257 | 8 | 236 | 5.69e-21 | 90.5 |
| Msa1427790 | AT1G15950.6 | 35.333 | 150 | 85 | 5 | 7 | 154 | 13 | 152 | 6.49e-21 | 90.1 |
| Msa1427790 | AT1G15950.5 | 35.333 | 150 | 85 | 5 | 7 | 154 | 13 | 152 | 6.90e-21 | 90.5 |
| Msa1427790 | AT1G15950.4 | 35.333 | 150 | 85 | 5 | 7 | 154 | 13 | 152 | 9.20e-21 | 90.1 |
| Msa1427790 | AT1G15950.3 | 35.333 | 150 | 85 | 5 | 7 | 154 | 13 | 152 | 1.81e-20 | 90.1 |
| Msa1427790 | AT1G15950.1 | 35.333 | 150 | 85 | 5 | 7 | 154 | 13 | 152 | 1.81e-20 | 90.1 |
| Msa1427790 | AT1G15950.2 | 35.333 | 150 | 85 | 5 | 7 | 154 | 13 | 152 | 2.13e-20 | 89.7 |
| Msa1427790 | AT1G80820.1 | 30.859 | 256 | 145 | 10 | 7 | 257 | 8 | 236 | 2.38e-20 | 89.7 |
| Msa1427790 | AT2G33600.1 | 33.333 | 216 | 112 | 7 | 6 | 211 | 8 | 201 | 5.32e-19 | 85.9 |
| Msa1427790 | AT2G02400.1 | 32.759 | 174 | 103 | 6 | 7 | 178 | 6 | 167 | 4.57e-18 | 83.2 |
| Msa1427790 | AT1G68540.1 | 31.492 | 181 | 106 | 5 | 4 | 178 | 1 | 169 | 6.04e-17 | 80.1 |
| Msa1427790 | AT2G45400.3 | 30.435 | 207 | 133 | 5 | 19 | 225 | 3 | 198 | 7.55e-16 | 76.6 |
| Msa1427790 | AT1G09490.2 | 26.761 | 213 | 137 | 6 | 39 | 247 | 9 | 206 | 6.39e-15 | 73.9 |
| Msa1427790 | AT1G09500.2 | 30.601 | 183 | 114 | 6 | 39 | 219 | 6 | 177 | 2.09e-14 | 72.4 |
| Msa1427790 | AT1G25460.1 | 31.111 | 180 | 106 | 5 | 4 | 178 | 1 | 167 | 2.86e-14 | 72.4 |
Find 63 sgRNAs with CRISPR-Local
Find 236 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGACTTTGAGGCTGCAATTA+AGG | 0.212022 | tig0026223:+4405 | Msa1427790:CDS |
| CAATCATTCTGCAGTTCTTA+TGG | 0.218227 | tig0026223:+5772 | Msa1427790:CDS |
| GTACCATGATGCTTATCTTA+AGG | 0.339878 | tig0026223:+5261 | Msa1427790:CDS |
| ATTACTGAAGCATCGCTTGC+TGG | 0.342941 | tig0026223:+5073 | Msa1427790:CDS |
| GACTTTGAGGCTGCAATTAA+GGG | 0.352832 | tig0026223:+4406 | Msa1427790:CDS |
| GTATGCGTCACAGGTGCTTC+TGG | 0.352861 | tig0026223:+4108 | Msa1427790:CDS |
| TTACAACTCAATTGACTTTG+AGG | 0.381158 | tig0026223:+4393 | Msa1427790:CDS |
| GACTGGTTTCAATGATATAA+TGG | 0.390602 | tig0026223:+5195 | Msa1427790:CDS |
| TAACCTGAGATGCGGGTTCA+TGG | 0.394734 | tig0026223:-4465 | None:intergenic |
| CTTTACAGAGGATGAGTCTA+AGG | 0.400084 | tig0026223:+4309 | Msa1427790:intron |
| TCCACAATCACAAGACAAAC+TGG | 0.405298 | tig0026223:+4351 | Msa1427790:CDS |
| CCAGTCCCATCATCTTTCAT+TGG | 0.410585 | tig0026223:-5178 | None:intergenic |
| AGTCTCCTATGTGGGGTTGT+AGG | 0.417874 | tig0026223:+5571 | Msa1427790:CDS |
| ATATAATGGATGAAACTTGC+TGG | 0.423061 | tig0026223:+5209 | Msa1427790:CDS |
| GATCCATGAACCCGCATCTC+AGG | 0.456989 | tig0026223:+4462 | Msa1427790:CDS |
| GCTTCTCCAATGAAAGATGA+TGG | 0.461395 | tig0026223:+5172 | Msa1427790:CDS |
| CAATGAAAATGGTGGAGGGT+TGG | 0.467224 | tig0026223:+5540 | Msa1427790:CDS |
| ATGTGTAAGGTATGCGTCAC+AGG | 0.467565 | tig0026223:+4099 | Msa1427790:CDS |
| AGCTGTGGGAACAATGAAAA+TGG | 0.468232 | tig0026223:+5529 | Msa1427790:CDS |
| TGCAAATGGACGCAAATCAC+TGG | 0.474718 | tig0026223:+5660 | Msa1427790:CDS |
| TGAAAATGGTGGAGGGTTGG+AGG | 0.475120 | tig0026223:+5543 | Msa1427790:CDS |
| CATATCACAGAAAATGCAAA+TGG | 0.475143 | tig0026223:+5646 | Msa1427790:CDS |
| AGGTGGTAAGTCTCCTATGT+GGG | 0.493459 | tig0026223:+5563 | Msa1427790:CDS |
| ACCAGTTTGTCTTGTGATTG+TGG | 0.493902 | tig0026223:-4352 | None:intergenic |
| TTACTGAAGCATCGCTTGCT+GGG | 0.524780 | tig0026223:+5074 | Msa1427790:CDS |
| AGATGCGGGTTCATGGATCA+AGG | 0.529187 | tig0026223:-4458 | None:intergenic |
| GATACAAATTGCAACGCTAC+CGG | 0.530650 | tig0026223:-5620 | None:intergenic |
| GGTGATGGAAGCAATGTGTA+AGG | 0.539971 | tig0026223:+4086 | Msa1427790:exon |
| TATAATTTAACCTGAGATGC+GGG | 0.540168 | tig0026223:-4472 | None:intergenic |
| ATATGCTAAAGAATCGTTGA+GGG | 0.549055 | tig0026223:-5236 | None:intergenic |
| AAATGGTGGAGGGTTGGAGG+TGG | 0.552531 | tig0026223:+5546 | Msa1427790:CDS |
| TGCAACGCTACCGGGTGTGA+AGG | 0.555436 | tig0026223:-5611 | None:intergenic |
| GAGGTGGTAAGTCTCCTATG+TGG | 0.557624 | tig0026223:+5562 | Msa1427790:CDS |
| GCTCTTCATTATCAGAATGA+CGG | 0.557647 | tig0026223:+5813 | Msa1427790:CDS |
| ATACAAATTGCAACGCTACC+GGG | 0.561526 | tig0026223:-5619 | None:intergenic |
| CTCCTATGTGGGGTTGTAGG+AGG | 0.562515 | tig0026223:+5574 | Msa1427790:CDS |
| AGAAGCAGATACAACAGATC+CGG | 0.565206 | tig0026223:-5155 | None:intergenic |
| CTTCTCCAATGAAAGATGAT+GGG | 0.569500 | tig0026223:+5173 | Msa1427790:CDS |
| GCTATGTATTGTAAGAGAGC+GGG | 0.575478 | tig0026223:+5109 | Msa1427790:CDS |
| GACACATCAACATGTACAAG+AGG | 0.577503 | tig0026223:-5712 | None:intergenic |
| TGAAGCTCATATATTCTGCA+TGG | 0.578726 | tig0026223:+5737 | Msa1427790:CDS |
| AGGAATATATGTTGAGCTGT+GGG | 0.579788 | tig0026223:+5515 | Msa1427790:CDS |
| GGGTTCATGGATCAAGGGTG+TGG | 0.581982 | tig0026223:-4452 | None:intergenic |
| GAGGAATATATGTTGAGCTG+TGG | 0.584405 | tig0026223:+5514 | Msa1427790:CDS |
| TCAAGTCTCTGAGAGTTGCA+TGG | 0.594926 | tig0026223:-4182 | None:intergenic |
| GGGAACAATGAAAATGGTGG+AGG | 0.596591 | tig0026223:+5535 | Msa1427790:CDS |
| ATATAATTTAACCTGAGATG+CGG | 0.598236 | tig0026223:-4473 | None:intergenic |
| AATATGCTAAAGAATCGTTG+AGG | 0.599579 | tig0026223:-5237 | None:intergenic |
| TGCTATGTATTGTAAGAGAG+CGG | 0.604433 | tig0026223:+5108 | Msa1427790:CDS |
| CCAATGAAAGATGATGGGAC+TGG | 0.605272 | tig0026223:+5178 | Msa1427790:CDS |
| GTATTGTAAGAGAGCGGGAA+CGG | 0.611184 | tig0026223:+5114 | Msa1427790:CDS |
| GACCAGAAAAGGGAAGGTGA+TGG | 0.618651 | tig0026223:+4071 | None:intergenic |
| TTACCTTAAGATAAGCATCA+TGG | 0.622737 | tig0026223:-5264 | None:intergenic |
| GGTGGTAAGTCTCCTATGTG+GGG | 0.640603 | tig0026223:+5564 | Msa1427790:CDS |
| TACAGAGGATGAGTCTAAGG+TGG | 0.642409 | tig0026223:+4312 | Msa1427790:intron |
| GATGCGGGTTCATGGATCAA+GGG | 0.646418 | tig0026223:-4457 | None:intergenic |
| ACTCTTCAATCCTTCACACC+CGG | 0.652288 | tig0026223:+5601 | Msa1427790:CDS |
| GGAACAATGAAAATGGTGGA+GGG | 0.652681 | tig0026223:+5536 | Msa1427790:CDS |
| TTATTCAAAGACAGTGACAG+AGG | 0.655380 | tig0026223:+5495 | Msa1427790:CDS |
| TATGCTAAAGAATCGTTGAG+GGG | 0.679306 | tig0026223:-5235 | None:intergenic |
| CACCTCCTACAACCCCACAT+AGG | 0.680826 | tig0026223:-5576 | None:intergenic |
| GTGAAGCGTCTCATTTACAC+CGG | 0.695408 | tig0026223:+5136 | Msa1427790:CDS |
| TGTGGGAACAATGAAAATGG+TGG | 0.725840 | tig0026223:+5532 | Msa1427790:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATACAAAAAATCTATCA+TGG | + | tig0026223:4732-4751 | Msa1427790:intron | 15.0% |
| !!! | TAAGAATAATTGATTTTGTA+GGG | + | tig0026223:4922-4941 | Msa1427790:intron | 15.0% |
| !!! | GTATTTGAATTTTATTGTAA+TGG | + | tig0026223:5449-5468 | Msa1427790:intron | 15.0% |
| !! | TTAATACAAAAAATCTATCA+TGG | + | tig0026223:4732-4751 | Msa1427790:intron | 15.0% |
| !!! | TAAGAATAATTGATTTTGTA+GGG | + | tig0026223:4922-4941 | Msa1427790:intron | 15.0% |
| !!! | GTATTTGAATTTTATTGTAA+TGG | + | tig0026223:5449-5468 | Msa1427790:intron | 15.0% |
| !! | TTAAATTATATCCATGTGTT+TGG | + | tig0026223:4485-4504 | Msa1427790:intron | 20.0% |
| !! | CTAATATGATAATATAGCTA+GGG | - | tig0026223:4652-4671 | None:intergenic | 20.0% |
| !! | TCTAATATGATAATATAGCT+AGG | - | tig0026223:4653-4672 | None:intergenic | 20.0% |
| !!! | GTAAGAATAATTGATTTTGT+AGG | + | tig0026223:4921-4940 | Msa1427790:intron | 20.0% |
| !! | CATATGGTTAAAATTTGAAT+CGG | - | tig0026223:4963-4982 | None:intergenic | 20.0% |
| !!! | TTTTAACCATATGAAAACAT+AGG | + | tig0026223:4970-4989 | Msa1427790:intron | 20.0% |
| !!! | TTTTTACCTATGTTTTCATA+TGG | - | tig0026223:4979-4998 | None:intergenic | 20.0% |
| !! | TGAAAACATAGGTAAAAATA+AGG | + | tig0026223:4981-5000 | Msa1427790:intron | 20.0% |
| !! | TTAAATTATATCCATGTGTT+TGG | + | tig0026223:4485-4504 | Msa1427790:intron | 20.0% |
| !! | CTAATATGATAATATAGCTA+GGG | - | tig0026223:4652-4671 | None:intergenic | 20.0% |
| !! | TCTAATATGATAATATAGCT+AGG | - | tig0026223:4653-4672 | None:intergenic | 20.0% |
| !!! | GTAAGAATAATTGATTTTGT+AGG | + | tig0026223:4921-4940 | Msa1427790:intron | 20.0% |
| !! | CATATGGTTAAAATTTGAAT+CGG | - | tig0026223:4963-4982 | None:intergenic | 20.0% |
| !!! | TTTTAACCATATGAAAACAT+AGG | + | tig0026223:4970-4989 | Msa1427790:intron | 20.0% |
| !!! | TTTTTACCTATGTTTTCATA+TGG | - | tig0026223:4979-4998 | None:intergenic | 20.0% |
| !! | TGAAAACATAGGTAAAAATA+AGG | + | tig0026223:4981-5000 | Msa1427790:intron | 20.0% |
| ! | ATATAATTTAACCTGAGATG+CGG | - | tig0026223:4476-4495 | None:intergenic | 25.0% |
| ! | TTTGGATATCTAGTTGTATT+TGG | + | tig0026223:4503-4522 | Msa1427790:intron | 25.0% |
| ! | ATATCTAGTTGTATTTGGAT+AGG | + | tig0026223:4508-4527 | Msa1427790:intron | 25.0% |
| ! | TCTCACATTTAACAGAAATA+TGG | - | tig0026223:4590-4609 | None:intergenic | 25.0% |
| ! | ATCTTTGACAAATATGAGTT+TGG | - | tig0026223:5293-5312 | None:intergenic | 25.0% |
| ! | TATTTGTCAAAGATAGATCA+TGG | + | tig0026223:5299-5318 | Msa1427790:intron | 25.0% |
| ! | TTCTTCCGAAACTATTATTA+AGG | + | tig0026223:5370-5389 | Msa1427790:intron | 25.0% |
| ! | TGTCACCTTAATAATAGTTT+CGG | - | tig0026223:5378-5397 | None:intergenic | 25.0% |
| !! | ATGTCTTATCTCTTTTCAAT+TGG | + | tig0026223:5424-5443 | Msa1427790:intron | 25.0% |
| !!! | GTAATGGACTTGTTTTTTTA+AGG | + | tig0026223:5465-5484 | Msa1427790:intron | 25.0% |
| ! | GAGTTTGTACAAAAATTCTT+GGG | + | tig0026223:5682-5701 | Msa1427790:CDS | 25.0% |
| ! | AGTTTGTACAAAAATTCTTG+GGG | + | tig0026223:5683-5702 | Msa1427790:CDS | 25.0% |
| ! | ATATAATTTAACCTGAGATG+CGG | - | tig0026223:4476-4495 | None:intergenic | 25.0% |
| ! | TTTGGATATCTAGTTGTATT+TGG | + | tig0026223:4503-4522 | Msa1427790:intron | 25.0% |
| ! | ATATCTAGTTGTATTTGGAT+AGG | + | tig0026223:4508-4527 | Msa1427790:intron | 25.0% |
| ! | TCTCACATTTAACAGAAATA+TGG | - | tig0026223:4590-4609 | None:intergenic | 25.0% |
| ! | ATCTTTGACAAATATGAGTT+TGG | - | tig0026223:5293-5312 | None:intergenic | 25.0% |
| ! | TATTTGTCAAAGATAGATCA+TGG | + | tig0026223:5299-5318 | Msa1427790:intron | 25.0% |
| ! | TTCTTCCGAAACTATTATTA+AGG | + | tig0026223:5370-5389 | Msa1427790:intron | 25.0% |
| ! | TGTCACCTTAATAATAGTTT+CGG | - | tig0026223:5378-5397 | None:intergenic | 25.0% |
| !! | ATGTCTTATCTCTTTTCAAT+TGG | + | tig0026223:5424-5443 | Msa1427790:intron | 25.0% |
| !!! | GTAATGGACTTGTTTTTTTA+AGG | + | tig0026223:5465-5484 | Msa1427790:intron | 25.0% |
| ! | GAGTTTGTACAAAAATTCTT+GGG | + | tig0026223:5682-5701 | Msa1427790:CDS | 25.0% |
| ! | AGTTTGTACAAAAATTCTTG+GGG | + | tig0026223:5683-5702 | Msa1427790:CDS | 25.0% |
| !! | ATCAACAAGCTTTTAGCTAA+AGG | + | tig0026223:4150-4169 | Msa1427790:CDS | 30.0% |
| TTTGCAAAGCCTTTATTAGT+GGG | - | tig0026223:4282-4301 | None:intergenic | 30.0% | |
| ATTTGCAAAGCCTTTATTAG+TGG | - | tig0026223:4283-4302 | None:intergenic | 30.0% | |
| ! | TTACAACTCAATTGACTTTG+AGG | + | tig0026223:4393-4412 | Msa1427790:CDS | 30.0% |
| TATAATTTAACCTGAGATGC+GGG | - | tig0026223:4475-4494 | None:intergenic | 30.0% | |
| TAACTCAGTATTTACGAAAC+TGG | + | tig0026223:4533-4552 | Msa1427790:intron | 30.0% | |
| ! | ATTTACGAAACTGGCTTATA+AGG | + | tig0026223:4542-4561 | Msa1427790:intron | 30.0% |
| GCTCTTTATTGGAATTGTAT+TGG | - | tig0026223:4861-4880 | None:intergenic | 30.0% | |
| TGGTTAAAATTTGAATCGGT+CGG | - | tig0026223:4959-4978 | None:intergenic | 30.0% | |
| ATAATATGCATAGCAGTTCA+AGG | + | tig0026223:5048-5067 | Msa1427790:intron | 30.0% | |
| !! | GACTGGTTTCAATGATATAA+TGG | + | tig0026223:5195-5214 | Msa1427790:CDS | 30.0% |
| !! | ATATAATGGATGAAACTTGC+TGG | + | tig0026223:5209-5228 | Msa1427790:CDS | 30.0% |
| ATATGCTAAAGAATCGTTGA+GGG | - | tig0026223:5239-5258 | None:intergenic | 30.0% | |
| AATATGCTAAAGAATCGTTG+AGG | - | tig0026223:5240-5259 | None:intergenic | 30.0% | |
| TTACCTTAAGATAAGCATCA+TGG | - | tig0026223:5267-5286 | None:intergenic | 30.0% | |
| ! | TCTTATCTCTTTTCAATTGG+TGG | + | tig0026223:5427-5446 | Msa1427790:intron | 30.0% |
| CATATCACAGAAAATGCAAA+TGG | + | tig0026223:5646-5665 | Msa1427790:CDS | 30.0% | |
| GGAGTTTGTACAAAAATTCT+TGG | + | tig0026223:5681-5700 | Msa1427790:CDS | 30.0% | |
| !! | ATCAACAAGCTTTTAGCTAA+AGG | + | tig0026223:4150-4169 | Msa1427790:CDS | 30.0% |
| TTTGCAAAGCCTTTATTAGT+GGG | - | tig0026223:4282-4301 | None:intergenic | 30.0% | |
| ATTTGCAAAGCCTTTATTAG+TGG | - | tig0026223:4283-4302 | None:intergenic | 30.0% | |
| ! | TTACAACTCAATTGACTTTG+AGG | + | tig0026223:4393-4412 | Msa1427790:CDS | 30.0% |
| TATAATTTAACCTGAGATGC+GGG | - | tig0026223:4475-4494 | None:intergenic | 30.0% | |
| TAACTCAGTATTTACGAAAC+TGG | + | tig0026223:4533-4552 | Msa1427790:intron | 30.0% | |
| ! | ATTTACGAAACTGGCTTATA+AGG | + | tig0026223:4542-4561 | Msa1427790:intron | 30.0% |
| GCTCTTTATTGGAATTGTAT+TGG | - | tig0026223:4861-4880 | None:intergenic | 30.0% | |
| TGGTTAAAATTTGAATCGGT+CGG | - | tig0026223:4959-4978 | None:intergenic | 30.0% | |
| ATAATATGCATAGCAGTTCA+AGG | + | tig0026223:5048-5067 | Msa1427790:intron | 30.0% | |
| !! | GACTGGTTTCAATGATATAA+TGG | + | tig0026223:5195-5214 | Msa1427790:CDS | 30.0% |
| !! | ATATAATGGATGAAACTTGC+TGG | + | tig0026223:5209-5228 | Msa1427790:CDS | 30.0% |
| ATATGCTAAAGAATCGTTGA+GGG | - | tig0026223:5239-5258 | None:intergenic | 30.0% | |
| AATATGCTAAAGAATCGTTG+AGG | - | tig0026223:5240-5259 | None:intergenic | 30.0% | |
| TTACCTTAAGATAAGCATCA+TGG | - | tig0026223:5267-5286 | None:intergenic | 30.0% | |
| ! | TCTTATCTCTTTTCAATTGG+TGG | + | tig0026223:5427-5446 | Msa1427790:intron | 30.0% |
| CATATCACAGAAAATGCAAA+TGG | + | tig0026223:5646-5665 | Msa1427790:CDS | 30.0% | |
| GGAGTTTGTACAAAAATTCT+TGG | + | tig0026223:5681-5700 | Msa1427790:CDS | 30.0% | |
| CAACTAGATATCCAAACACA+TGG | - | tig0026223:4499-4518 | None:intergenic | 35.0% | |
| TAGGGCTATCAAAAATCCAT+TGG | - | tig0026223:4634-4653 | None:intergenic | 35.0% | |
| ! | CTCACAAAATCAGCTTTGTA+AGG | - | tig0026223:4700-4719 | None:intergenic | 35.0% |
| !! | CTTACAAAGCTGATTTTGTG+AGG | + | tig0026223:4698-4717 | Msa1427790:intron | 35.0% |
| AACAAGTGGTTCAACTTCAA+CGG | - | tig0026223:4778-4797 | None:intergenic | 35.0% | |
| !! | ACCACTTGTTATCAAACAAG+AGG | + | tig0026223:4788-4807 | Msa1427790:intron | 35.0% |
| ! | TCCTCTTGTTTGATAACAAG+TGG | - | tig0026223:4792-4811 | None:intergenic | 35.0% |
| !! | ACTTGTTATCAAACAAGAGG+AGG | + | tig0026223:4791-4810 | Msa1427790:intron | 35.0% |
| ! | CTTGTTATCAAACAAGAGGA+GGG | + | tig0026223:4792-4811 | Msa1427790:intron | 35.0% |
| TATTGGAGTCTCATATTGCT+CGG | - | tig0026223:4844-4863 | None:intergenic | 35.0% | |
| TTAAACGTGGAGCTCTTTAT+TGG | - | tig0026223:4872-4891 | None:intergenic | 35.0% | |
| AGACCTTACATCATTAAACG+TGG | - | tig0026223:4885-4904 | None:intergenic | 35.0% | |
| TGCTATGTATTGTAAGAGAG+CGG | + | tig0026223:5108-5127 | Msa1427790:CDS | 35.0% | |
| CTTCTCCAATGAAAGATGAT+GGG | + | tig0026223:5173-5192 | Msa1427790:CDS | 35.0% | |
| TATGCTAAAGAATCGTTGAG+GGG | - | tig0026223:5238-5257 | None:intergenic | 35.0% | |
| GTACCATGATGCTTATCTTA+AGG | + | tig0026223:5261-5280 | Msa1427790:CDS | 35.0% | |
| TTATTCAAAGACAGTGACAG+AGG | + | tig0026223:5495-5514 | Msa1427790:CDS | 35.0% | |
| AGGAATATATGTTGAGCTGT+GGG | + | tig0026223:5515-5534 | Msa1427790:CDS | 35.0% | |
| TGAAGCTCATATATTCTGCA+TGG | + | tig0026223:5737-5756 | Msa1427790:CDS | 35.0% | |
| CAATCATTCTGCAGTTCTTA+TGG | + | tig0026223:5772-5791 | Msa1427790:CDS | 35.0% | |
| GCTCTTCATTATCAGAATGA+CGG | + | tig0026223:5813-5832 | Msa1427790:CDS | 35.0% | |
| CAACTAGATATCCAAACACA+TGG | - | tig0026223:4499-4518 | None:intergenic | 35.0% | |
| TAGGGCTATCAAAAATCCAT+TGG | - | tig0026223:4634-4653 | None:intergenic | 35.0% | |
| ! | CTCACAAAATCAGCTTTGTA+AGG | - | tig0026223:4700-4719 | None:intergenic | 35.0% |
| !! | CTTACAAAGCTGATTTTGTG+AGG | + | tig0026223:4698-4717 | Msa1427790:intron | 35.0% |
| AACAAGTGGTTCAACTTCAA+CGG | - | tig0026223:4778-4797 | None:intergenic | 35.0% | |
| !! | ACCACTTGTTATCAAACAAG+AGG | + | tig0026223:4788-4807 | Msa1427790:intron | 35.0% |
| ! | TCCTCTTGTTTGATAACAAG+TGG | - | tig0026223:4792-4811 | None:intergenic | 35.0% |
| !! | ACTTGTTATCAAACAAGAGG+AGG | + | tig0026223:4791-4810 | Msa1427790:intron | 35.0% |
| ! | CTTGTTATCAAACAAGAGGA+GGG | + | tig0026223:4792-4811 | Msa1427790:intron | 35.0% |
| TATTGGAGTCTCATATTGCT+CGG | - | tig0026223:4844-4863 | None:intergenic | 35.0% | |
| TTAAACGTGGAGCTCTTTAT+TGG | - | tig0026223:4872-4891 | None:intergenic | 35.0% | |
| AGACCTTACATCATTAAACG+TGG | - | tig0026223:4885-4904 | None:intergenic | 35.0% | |
| TGCTATGTATTGTAAGAGAG+CGG | + | tig0026223:5108-5127 | Msa1427790:CDS | 35.0% | |
| CTTCTCCAATGAAAGATGAT+GGG | + | tig0026223:5173-5192 | Msa1427790:CDS | 35.0% | |
| TATGCTAAAGAATCGTTGAG+GGG | - | tig0026223:5238-5257 | None:intergenic | 35.0% | |
| GTACCATGATGCTTATCTTA+AGG | + | tig0026223:5261-5280 | Msa1427790:CDS | 35.0% | |
| TTATTCAAAGACAGTGACAG+AGG | + | tig0026223:5495-5514 | Msa1427790:CDS | 35.0% | |
| AGGAATATATGTTGAGCTGT+GGG | + | tig0026223:5515-5534 | Msa1427790:CDS | 35.0% | |
| TGAAGCTCATATATTCTGCA+TGG | + | tig0026223:5737-5756 | Msa1427790:CDS | 35.0% | |
| CAATCATTCTGCAGTTCTTA+TGG | + | tig0026223:5772-5791 | Msa1427790:CDS | 35.0% | |
| GCTCTTCATTATCAGAATGA+CGG | + | tig0026223:5813-5832 | Msa1427790:CDS | 35.0% | |
| GCAAATCACACACTTTACAG+AGG | + | tig0026223:4297-4316 | Msa1427790:intron | 40.0% | |
| CTTTACAGAGGATGAGTCTA+AGG | + | tig0026223:4309-4328 | Msa1427790:intron | 40.0% | |
| TCCACAATCACAAGACAAAC+TGG | + | tig0026223:4351-4370 | Msa1427790:CDS | 40.0% | |
| ACCAGTTTGTCTTGTGATTG+TGG | - | tig0026223:4355-4374 | None:intergenic | 40.0% | |
| !! | TGACTTTGAGGCTGCAATTA+AGG | + | tig0026223:4405-4424 | Msa1427790:CDS | 40.0% |
| !! | GACTTTGAGGCTGCAATTAA+GGG | + | tig0026223:4406-4425 | Msa1427790:CDS | 40.0% |
| AGACTGTGTCCAATAGAAAG+TGG | + | tig0026223:4607-4626 | Msa1427790:intron | 40.0% | |
| TCCAATAGAAAGTGGTCCAA+TGG | + | tig0026223:4615-4634 | Msa1427790:intron | 40.0% | |
| TCCATTGGACCACTTTCTAT+TGG | - | tig0026223:4619-4638 | None:intergenic | 40.0% | |
| ATTGGAGTCTCATATTGCTC+GGG | - | tig0026223:4843-4862 | None:intergenic | 40.0% | |
| GCTCCACGTTTAATGATGTA+AGG | + | tig0026223:4879-4898 | Msa1427790:intron | 40.0% | |
| GCTATGTATTGTAAGAGAGC+GGG | + | tig0026223:5109-5128 | Msa1427790:CDS | 40.0% | |
| AGAAGCAGATACAACAGATC+CGG | - | tig0026223:5158-5177 | None:intergenic | 40.0% | |
| GCTTCTCCAATGAAAGATGA+TGG | + | tig0026223:5172-5191 | Msa1427790:CDS | 40.0% | |
| GAGGAATATATGTTGAGCTG+TGG | + | tig0026223:5514-5533 | Msa1427790:CDS | 40.0% | |
| AGCTGTGGGAACAATGAAAA+TGG | + | tig0026223:5529-5548 | Msa1427790:CDS | 40.0% | |
| TGTGGGAACAATGAAAATGG+TGG | + | tig0026223:5532-5551 | Msa1427790:CDS | 40.0% | |
| ! | GGAACAATGAAAATGGTGGA+GGG | + | tig0026223:5536-5555 | Msa1427790:CDS | 40.0% |
| ATACAAATTGCAACGCTACC+GGG | - | tig0026223:5622-5641 | None:intergenic | 40.0% | |
| GATACAAATTGCAACGCTAC+CGG | - | tig0026223:5623-5642 | None:intergenic | 40.0% | |
| GACACATCAACATGTACAAG+AGG | - | tig0026223:5715-5734 | None:intergenic | 40.0% | |
| ! | ATGACGGTTCTTGTTGATTG+AGG | + | tig0026223:5829-5848 | Msa1427790:CDS | 40.0% |
| ! | TGACGGTTCTTGTTGATTGA+GGG | + | tig0026223:5830-5849 | Msa1427790:CDS | 40.0% |
| GCAAATCACACACTTTACAG+AGG | + | tig0026223:4297-4316 | Msa1427790:intron | 40.0% | |
| CTTTACAGAGGATGAGTCTA+AGG | + | tig0026223:4309-4328 | Msa1427790:intron | 40.0% | |
| TCCACAATCACAAGACAAAC+TGG | + | tig0026223:4351-4370 | Msa1427790:CDS | 40.0% | |
| ACCAGTTTGTCTTGTGATTG+TGG | - | tig0026223:4355-4374 | None:intergenic | 40.0% | |
| !! | TGACTTTGAGGCTGCAATTA+AGG | + | tig0026223:4405-4424 | Msa1427790:CDS | 40.0% |
| !! | GACTTTGAGGCTGCAATTAA+GGG | + | tig0026223:4406-4425 | Msa1427790:CDS | 40.0% |
| AGACTGTGTCCAATAGAAAG+TGG | + | tig0026223:4607-4626 | Msa1427790:intron | 40.0% | |
| TCCAATAGAAAGTGGTCCAA+TGG | + | tig0026223:4615-4634 | Msa1427790:intron | 40.0% | |
| TCCATTGGACCACTTTCTAT+TGG | - | tig0026223:4619-4638 | None:intergenic | 40.0% | |
| ATTGGAGTCTCATATTGCTC+GGG | - | tig0026223:4843-4862 | None:intergenic | 40.0% | |
| GCTCCACGTTTAATGATGTA+AGG | + | tig0026223:4879-4898 | Msa1427790:intron | 40.0% | |
| GCTATGTATTGTAAGAGAGC+GGG | + | tig0026223:5109-5128 | Msa1427790:CDS | 40.0% | |
| AGAAGCAGATACAACAGATC+CGG | - | tig0026223:5158-5177 | None:intergenic | 40.0% | |
| GCTTCTCCAATGAAAGATGA+TGG | + | tig0026223:5172-5191 | Msa1427790:CDS | 40.0% | |
| GAGGAATATATGTTGAGCTG+TGG | + | tig0026223:5514-5533 | Msa1427790:CDS | 40.0% | |
| AGCTGTGGGAACAATGAAAA+TGG | + | tig0026223:5529-5548 | Msa1427790:CDS | 40.0% | |
| TGTGGGAACAATGAAAATGG+TGG | + | tig0026223:5532-5551 | Msa1427790:CDS | 40.0% | |
| ! | GGAACAATGAAAATGGTGGA+GGG | + | tig0026223:5536-5555 | Msa1427790:CDS | 40.0% |
| ATACAAATTGCAACGCTACC+GGG | - | tig0026223:5622-5641 | None:intergenic | 40.0% | |
| GATACAAATTGCAACGCTAC+CGG | - | tig0026223:5623-5642 | None:intergenic | 40.0% | |
| GACACATCAACATGTACAAG+AGG | - | tig0026223:5715-5734 | None:intergenic | 40.0% | |
| !! | GGTGATGGAAGCAATGTGTA+AGG | + | tig0026223:4086-4105 | Msa1427790:exon | 45.0% |
| ATGTGTAAGGTATGCGTCAC+AGG | + | tig0026223:4099-4118 | Msa1427790:CDS | 45.0% | |
| ! | TCAAGTCTCTGAGAGTTGCA+TGG | - | tig0026223:4185-4204 | None:intergenic | 45.0% |
| CTTCCACCACCCACTAATAA+AGG | + | tig0026223:4270-4289 | Msa1427790:intron | 45.0% | |
| ! | AAGCCTTTATTAGTGGGTGG+TGG | - | tig0026223:4276-4295 | None:intergenic | 45.0% |
| GCAAAGCCTTTATTAGTGGG+TGG | - | tig0026223:4279-4298 | None:intergenic | 45.0% | |
| TACAGAGGATGAGTCTAAGG+TGG | + | tig0026223:4312-4331 | Msa1427790:intron | 45.0% | |
| GGTTCAACTTCAACGGATCT+TGG | - | tig0026223:4771-4790 | None:intergenic | 45.0% | |
| ! | TCTCATATTGCTCGGGTTGT+TGG | - | tig0026223:4836-4855 | None:intergenic | 45.0% |
| !! | ATTACTGAAGCATCGCTTGC+TGG | + | tig0026223:5073-5092 | Msa1427790:CDS | 45.0% |
| !! | TTACTGAAGCATCGCTTGCT+GGG | + | tig0026223:5074-5093 | Msa1427790:CDS | 45.0% |
| GTATTGTAAGAGAGCGGGAA+CGG | + | tig0026223:5114-5133 | Msa1427790:CDS | 45.0% | |
| ! | GTGAAGCGTCTCATTTACAC+CGG | + | tig0026223:5136-5155 | Msa1427790:CDS | 45.0% |
| CCAGTCCCATCATCTTTCAT+TGG | - | tig0026223:5181-5200 | None:intergenic | 45.0% | |
| !! | CCAATGAAAGATGATGGGAC+TGG | + | tig0026223:5178-5197 | Msa1427790:CDS | 45.0% |
| GGGAACAATGAAAATGGTGG+AGG | + | tig0026223:5535-5554 | Msa1427790:CDS | 45.0% | |
| ! | CAATGAAAATGGTGGAGGGT+TGG | + | tig0026223:5540-5559 | Msa1427790:CDS | 45.0% |
| AGGTGGTAAGTCTCCTATGT+GGG | + | tig0026223:5563-5582 | Msa1427790:CDS | 45.0% | |
| ACTCTTCAATCCTTCACACC+CGG | + | tig0026223:5601-5620 | Msa1427790:CDS | 45.0% | |
| TGCAAATGGACGCAAATCAC+TGG | + | tig0026223:5660-5679 | Msa1427790:CDS | 45.0% | |
| !! | GGTGATGGAAGCAATGTGTA+AGG | + | tig0026223:4086-4105 | Msa1427790:exon | 45.0% |
| ATGTGTAAGGTATGCGTCAC+AGG | + | tig0026223:4099-4118 | Msa1427790:CDS | 45.0% | |
| ! | TCAAGTCTCTGAGAGTTGCA+TGG | - | tig0026223:4185-4204 | None:intergenic | 45.0% |
| CTTCCACCACCCACTAATAA+AGG | + | tig0026223:4270-4289 | Msa1427790:intron | 45.0% | |
| ! | AAGCCTTTATTAGTGGGTGG+TGG | - | tig0026223:4276-4295 | None:intergenic | 45.0% |
| GCAAAGCCTTTATTAGTGGG+TGG | - | tig0026223:4279-4298 | None:intergenic | 45.0% | |
| TACAGAGGATGAGTCTAAGG+TGG | + | tig0026223:4312-4331 | Msa1427790:intron | 45.0% | |
| GGTTCAACTTCAACGGATCT+TGG | - | tig0026223:4771-4790 | None:intergenic | 45.0% | |
| ! | TCTCATATTGCTCGGGTTGT+TGG | - | tig0026223:4836-4855 | None:intergenic | 45.0% |
| !! | ATTACTGAAGCATCGCTTGC+TGG | + | tig0026223:5073-5092 | Msa1427790:CDS | 45.0% |
| !! | TTACTGAAGCATCGCTTGCT+GGG | + | tig0026223:5074-5093 | Msa1427790:CDS | 45.0% |
| GTATTGTAAGAGAGCGGGAA+CGG | + | tig0026223:5114-5133 | Msa1427790:CDS | 45.0% | |
| ! | GTGAAGCGTCTCATTTACAC+CGG | + | tig0026223:5136-5155 | Msa1427790:CDS | 45.0% |
| CCAGTCCCATCATCTTTCAT+TGG | - | tig0026223:5181-5200 | None:intergenic | 45.0% | |
| !! | CCAATGAAAGATGATGGGAC+TGG | + | tig0026223:5178-5197 | Msa1427790:CDS | 45.0% |
| GGGAACAATGAAAATGGTGG+AGG | + | tig0026223:5535-5554 | Msa1427790:CDS | 45.0% | |
| ! | CAATGAAAATGGTGGAGGGT+TGG | + | tig0026223:5540-5559 | Msa1427790:CDS | 45.0% |
| AGGTGGTAAGTCTCCTATGT+GGG | + | tig0026223:5563-5582 | Msa1427790:CDS | 45.0% | |
| ACTCTTCAATCCTTCACACC+CGG | + | tig0026223:5601-5620 | Msa1427790:CDS | 45.0% | |
| TGCAAATGGACGCAAATCAC+TGG | + | tig0026223:5660-5679 | Msa1427790:CDS | 45.0% | |
| GATGCGGGTTCATGGATCAA+GGG | - | tig0026223:4460-4479 | None:intergenic | 50.0% | |
| AGATGCGGGTTCATGGATCA+AGG | - | tig0026223:4461-4480 | None:intergenic | 50.0% | |
| TAACCTGAGATGCGGGTTCA+TGG | - | tig0026223:4468-4487 | None:intergenic | 50.0% | |
| ! | TGAAAATGGTGGAGGGTTGG+AGG | + | tig0026223:5543-5562 | Msa1427790:CDS | 50.0% |
| GAGGTGGTAAGTCTCCTATG+TGG | + | tig0026223:5562-5581 | Msa1427790:CDS | 50.0% | |
| GGTGGTAAGTCTCCTATGTG+GGG | + | tig0026223:5564-5583 | Msa1427790:CDS | 50.0% | |
| AGTCTCCTATGTGGGGTTGT+AGG | + | tig0026223:5571-5590 | Msa1427790:CDS | 50.0% | |
| GATGCGGGTTCATGGATCAA+GGG | - | tig0026223:4460-4479 | None:intergenic | 50.0% | |
| AGATGCGGGTTCATGGATCA+AGG | - | tig0026223:4461-4480 | None:intergenic | 50.0% | |
| TAACCTGAGATGCGGGTTCA+TGG | - | tig0026223:4468-4487 | None:intergenic | 50.0% | |
| ! | TGAAAATGGTGGAGGGTTGG+AGG | + | tig0026223:5543-5562 | Msa1427790:CDS | 50.0% |
| GAGGTGGTAAGTCTCCTATG+TGG | + | tig0026223:5562-5581 | Msa1427790:CDS | 50.0% | |
| GGTGGTAAGTCTCCTATGTG+GGG | + | tig0026223:5564-5583 | Msa1427790:CDS | 50.0% | |
| AGTCTCCTATGTGGGGTTGT+AGG | + | tig0026223:5571-5590 | Msa1427790:CDS | 50.0% | |
| GTATGCGTCACAGGTGCTTC+TGG | + | tig0026223:4108-4127 | Msa1427790:CDS | 55.0% | |
| GGGTTCATGGATCAAGGGTG+TGG | - | tig0026223:4455-4474 | None:intergenic | 55.0% | |
| GATCCATGAACCCGCATCTC+AGG | + | tig0026223:4462-4481 | Msa1427790:CDS | 55.0% | |
| ! | AAATGGTGGAGGGTTGGAGG+TGG | + | tig0026223:5546-5565 | Msa1427790:CDS | 55.0% |
| CTCCTATGTGGGGTTGTAGG+AGG | + | tig0026223:5574-5593 | Msa1427790:CDS | 55.0% | |
| CACCTCCTACAACCCCACAT+AGG | - | tig0026223:5579-5598 | None:intergenic | 55.0% | |
| GTATGCGTCACAGGTGCTTC+TGG | + | tig0026223:4108-4127 | Msa1427790:CDS | 55.0% | |
| GGGTTCATGGATCAAGGGTG+TGG | - | tig0026223:4455-4474 | None:intergenic | 55.0% | |
| GATCCATGAACCCGCATCTC+AGG | + | tig0026223:4462-4481 | Msa1427790:CDS | 55.0% | |
| ! | AAATGGTGGAGGGTTGGAGG+TGG | + | tig0026223:5546-5565 | Msa1427790:CDS | 55.0% |
| CTCCTATGTGGGGTTGTAGG+AGG | + | tig0026223:5574-5593 | Msa1427790:CDS | 55.0% | |
| CACCTCCTACAACCCCACAT+AGG | - | tig0026223:5579-5598 | None:intergenic | 55.0% | |
| TGCAACGCTACCGGGTGTGA+AGG | - | tig0026223:5614-5633 | None:intergenic | 60.0% | |
| TGCAACGCTACCGGGTGTGA+AGG | - | tig0026223:5614-5633 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0026223 | gene | 4081 | 5849 | 4081 | ID=Msa1427790;Name=Msa1427790 |
| tig0026223 | mRNA | 4081 | 5849 | 4081 | ID=Msa1427790-mRNA-1;Parent=Msa1427790;Name=Msa1427790-mRNA-1;_AED=0.18;_eAED=0.24;_QI=9|1|0.5|1|1|1|4|0|287 |
| tig0026223 | exon | 4081 | 4204 | 4081 | ID=Msa1427790-mRNA-1:exon:5607;Parent=Msa1427790-mRNA-1 |
| tig0026223 | exon | 4317 | 4483 | 4317 | ID=Msa1427790-mRNA-1:exon:5608;Parent=Msa1427790-mRNA-1 |
| tig0026223 | exon | 5064 | 5282 | 5064 | ID=Msa1427790-mRNA-1:exon:5609;Parent=Msa1427790-mRNA-1 |
| tig0026223 | exon | 5487 | 5849 | 5487 | ID=Msa1427790-mRNA-1:exon:5610;Parent=Msa1427790-mRNA-1 |
| tig0026223 | five_prime_UTR | 4081 | 4089 | 4081 | ID=Msa1427790-mRNA-1:five_prime_utr;Parent=Msa1427790-mRNA-1 |
| tig0026223 | CDS | 4090 | 4204 | 4090 | ID=Msa1427790-mRNA-1:cds;Parent=Msa1427790-mRNA-1 |
| tig0026223 | CDS | 4317 | 4483 | 4317 | ID=Msa1427790-mRNA-1:cds;Parent=Msa1427790-mRNA-1 |
| tig0026223 | CDS | 5064 | 5282 | 5064 | ID=Msa1427790-mRNA-1:cds;Parent=Msa1427790-mRNA-1 |
| tig0026223 | CDS | 5487 | 5849 | 5487 | ID=Msa1427790-mRNA-1:cds;Parent=Msa1427790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
