Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0437350 | XP_024631004.2 | 97.857 | 140 | 3 | 0 | 1 | 140 | 646 | 785 | 5.58e-90 | 289 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0437350 | sp|Q9XTR8|LIP1_CAEEL | 41.558 | 77 | 43 | 1 | 19 | 95 | 153 | 227 | 4.59e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0437350 | G7I787 | 97.857 | 140 | 3 | 0 | 1 | 140 | 646 | 785 | 2.77e-90 | 290 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0437350 | Msa0585230 | 0.811752 | 5.982641e-51 | -8.615850e-47 |
| Msa0437350 | Msa0599890 | 0.800938 | 1.139305e-48 | -8.615850e-47 |
| Msa0437350 | Msa1451620 | -0.805018 | 1.634368e-49 | -8.615850e-47 |
| Msa0437350 | Msa1460830 | 0.805490 | 1.301689e-49 | -8.615850e-47 |
| Msa0339620 | Msa0437350 | 0.808409 | 3.140999e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0437350 | MtrunA17_Chr1g0168851 | 97.857 | 140 | 3 | 0 | 1 | 140 | 646 | 785 | 5.38e-94 | 290 |
| Msa0437350 | MtrunA17_Chr4g0046011 | 34.234 | 111 | 58 | 4 | 23 | 119 | 214 | 323 | 3.79e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0437350 | AT4G13550.1 | 69.286 | 140 | 39 | 1 | 1 | 140 | 614 | 749 | 2.84e-55 | 186 |
| Msa0437350 | AT4G13550.3 | 69.286 | 140 | 39 | 1 | 1 | 140 | 646 | 781 | 3.20e-55 | 186 |
| Msa0437350 | AT4G13550.2 | 69.286 | 140 | 39 | 1 | 1 | 140 | 646 | 781 | 3.61e-55 | 186 |
| Msa0437350 | AT5G18640.5 | 43.243 | 74 | 38 | 1 | 22 | 95 | 169 | 238 | 1.70e-13 | 66.6 |
| Msa0437350 | AT5G18640.1 | 43.243 | 74 | 38 | 1 | 22 | 95 | 169 | 238 | 2.27e-13 | 66.6 |
| Msa0437350 | AT5G18640.3 | 43.243 | 74 | 38 | 1 | 22 | 95 | 169 | 238 | 2.27e-13 | 66.6 |
| Msa0437350 | AT5G18640.4 | 43.243 | 74 | 38 | 1 | 22 | 95 | 181 | 250 | 2.39e-13 | 66.6 |
| Msa0437350 | AT5G18640.2 | 43.243 | 74 | 38 | 1 | 22 | 95 | 181 | 250 | 2.39e-13 | 66.6 |
| Msa0437350 | AT5G18630.3 | 40.541 | 74 | 40 | 1 | 22 | 95 | 169 | 238 | 8.59e-12 | 62.0 |
| Msa0437350 | AT5G18630.2 | 40.541 | 74 | 40 | 1 | 22 | 95 | 169 | 238 | 1.15e-11 | 61.6 |
| Msa0437350 | AT5G18630.1 | 40.541 | 74 | 40 | 1 | 22 | 95 | 170 | 239 | 1.15e-11 | 61.6 |
| Msa0437350 | AT2G30550.1 | 43.820 | 89 | 43 | 3 | 12 | 97 | 305 | 389 | 3.49e-11 | 60.5 |
| Msa0437350 | AT2G30550.2 | 43.820 | 89 | 43 | 3 | 12 | 97 | 305 | 389 | 7.39e-11 | 59.7 |
Find 34 sgRNAs with CRISPR-Local
Find 347 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTACAATACCCCGGTTAA+TGG | 0.230357 | 3_2:+91556614 | Msa0437350:CDS |
| AAATGGCATATTTATGTTAC+TGG | 0.266430 | 3_2:+91553527 | Msa0437350:CDS |
| TTATGTTACTGGTCATAGTT+TGG | 0.318254 | 3_2:+91553538 | Msa0437350:CDS |
| CATGACAATAACCCATTAAC+CGG | 0.341967 | 3_2:-91556626 | None:intergenic |
| GTTACGAAGGTGATGTTCTT+GGG | 0.347906 | 3_2:+91558222 | Msa0437350:CDS |
| ACAGGAAAATAAAGATATCT+TGG | 0.349524 | 3_2:+91558193 | Msa0437350:intron |
| CCCATTAACCGGGGTATTGT+AGG | 0.371130 | 3_2:-91556615 | None:intergenic |
| TATGTTACTGGTCATAGTTT+GGG | 0.373760 | 3_2:+91553539 | Msa0437350:CDS |
| CCTACAATACCCCGGTTAAT+GGG | 0.375088 | 3_2:+91556615 | Msa0437350:CDS |
| GGTTACGAAGGTGATGTTCT+TGG | 0.384990 | 3_2:+91558221 | Msa0437350:CDS |
| ACTCCCGCAGCAAGAAATAA+AGG | 0.417461 | 3_2:-91556657 | None:intergenic |
| TAACATAAATATGCCATTTG+TGG | 0.431363 | 3_2:-91553523 | None:intergenic |
| CAGGAAAATAAAGATATCTT+GGG | 0.480127 | 3_2:+91558194 | Msa0437350:intron |
| CAACCTTTATTTCTTGCTGC+GGG | 0.494358 | 3_2:+91556654 | Msa0437350:CDS |
| TCATAGTTTGGGTGGTGCAT+TGG | 0.512489 | 3_2:+91553550 | Msa0437350:CDS |
| ACTTTGATCTATCCAGATGA+AGG | 0.512816 | 3_2:+91558740 | Msa0437350:CDS |
| ATTCTGAGTTCATCCACAAA+TGG | 0.529548 | 3_2:+91553510 | Msa0437350:CDS |
| TGCAGAAAGTGAAAGATAGC+TGG | 0.537699 | 3_2:+91556565 | Msa0437350:intron |
| TGAAAGTTCAAGAGCAAGCA+AGG | 0.541093 | 3_2:-91553576 | None:intergenic |
| GCTGGCGAATTGTGAATCAC+AGG | 0.546360 | 3_2:+91556583 | Msa0437350:CDS |
| AATAAAGATATCTTGGGAGA+TGG | 0.546737 | 3_2:+91558200 | Msa0437350:CDS |
| ATTTGCAGAGGTTTACAATG+AGG | 0.573302 | 3_2:+91555270 | Msa0437350:CDS |
| TGGTAACAAAAGATTTGCAG+AGG | 0.591510 | 3_2:+91555258 | Msa0437350:CDS |
| GTTACTGGTCATAGTTTGGG+TGG | 0.592963 | 3_2:+91553542 | Msa0437350:CDS |
| TCAACCTTTATTTCTTGCTG+CGG | 0.608618 | 3_2:+91556653 | Msa0437350:CDS |
| GGATAGATCAAAGTTGTGAA+TGG | 0.615206 | 3_2:-91558731 | None:intergenic |
| ATGACAATAACCCATTAACC+GGG | 0.615546 | 3_2:-91556625 | None:intergenic |
| CTTTGATCTATCCAGATGAA+GGG | 0.618511 | 3_2:+91558741 | Msa0437350:CDS |
| ATCTTGGGAGATGGTTACGA+AGG | 0.623499 | 3_2:+91558209 | Msa0437350:CDS |
| TTACGAAGGTGATGTTCTTG+GGG | 0.631176 | 3_2:+91558223 | Msa0437350:CDS |
| CTGGCGAATTGTGAATCACA+GGG | 0.633195 | 3_2:+91556584 | Msa0437350:CDS |
| GTTGACTATGACATCTGGTG+TGG | 0.664313 | 3_2:-91558249 | None:intergenic |
| ATATCATACCTACAATACCC+CGG | 0.723074 | 3_2:+91556607 | Msa0437350:CDS |
| TGACAATAACCCATTAACCG+GGG | 0.739534 | 3_2:-91556624 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTTTAAATTAAATTTT+TGG | + | chr3_2:91557027-91557046 | Msa0437350:intron | 0.0% |
| !! | TTATTTCATAATGATAAAAT+AGG | - | chr3_2:91553266-91553285 | None:intergenic | 10.0% |
| !! | TATATAGTATTATCTTATAT+AGG | - | chr3_2:91553727-91553746 | None:intergenic | 10.0% |
| !! | TAATATAAAAAATGAACATT+CGG | + | chr3_2:91554719-91554738 | Msa0437350:intron | 10.0% |
| !! | TAATATATTAAAACTTACTA+AGG | - | chr3_2:91556694-91556713 | None:intergenic | 10.0% |
| !!! | CCAAAAATTTAATTTAAAAA+AGG | - | chr3_2:91556994-91557013 | None:intergenic | 10.0% |
| !!! | CCTTTTTTAAATTAAATTTT+TGG | + | chr3_2:91556991-91557010 | Msa0437350:intron | 10.0% |
| !!! | AAAAATATTTTTAGTTAAAC+AGG | + | chr3_2:91558442-91558461 | Msa0437350:intron | 10.0% |
| !!! | TTTTACATTATTTTTTCTCA+TGG | + | chr3_2:91553289-91553308 | Msa0437350:intron | 15.0% |
| !!! | TGTAATTATTTAAAATGCAT+AGG | - | chr3_2:91554235-91554254 | None:intergenic | 15.0% |
| !! | ATACATATATTCAAAACAAT+GGG | - | chr3_2:91554369-91554388 | None:intergenic | 15.0% |
| !!! | TCTTTTACTATGTATAATTT+TGG | + | chr3_2:91555223-91555242 | Msa0437350:CDS | 15.0% |
| !! | AAATGTTATAAACACTATAA+AGG | - | chr3_2:91556062-91556081 | None:intergenic | 15.0% |
| !!! | GTAAGTTTTAATATATTACT+CGG | + | chr3_2:91556696-91556715 | Msa0437350:intron | 15.0% |
| !!! | AGAGTATACTTTTATATTTT+AGG | - | chr3_2:91556738-91556757 | None:intergenic | 15.0% |
| !!! | TTTTCTATACAAGAAATTTA+GGG | - | chr3_2:91557147-91557166 | None:intergenic | 15.0% |
| !!! | TTTTTCTATACAAGAAATTT+AGG | - | chr3_2:91557148-91557167 | None:intergenic | 15.0% |
| !! | AAAAAAAAAATCAGTCATTA+AGG | + | chr3_2:91557163-91557182 | Msa0437350:intron | 15.0% |
| !! | TTATCAAAAAAATAAACACT+TGG | - | chr3_2:91557399-91557418 | None:intergenic | 15.0% |
| !!! | TAAAAAACTGACTTTTAAAA+AGG | + | chr3_2:91557416-91557435 | Msa0437350:intron | 15.0% |
| !!! | AAAAAACTGACTTTTAAAAA+GGG | + | chr3_2:91557417-91557436 | Msa0437350:intron | 15.0% |
| !!! | AAGTAGTTTGTATAAAAAAA+AGG | + | chr3_2:91557700-91557719 | Msa0437350:intron | 15.0% |
| !!! | AAAATTCAAATTATTTTACG+AGG | - | chr3_2:91557959-91557978 | None:intergenic | 15.0% |
| !!! | ATGTCTTAGAATATTGTTTT+CGG | + | chr3_2:91552856-91552875 | Msa0437350:intron | 20.0% |
| !!! | TAAAACTAAAAGCATAAACT+TGG | - | chr3_2:91552905-91552924 | None:intergenic | 20.0% |
| !!! | ATGCTTTTAGTTTTAATCAT+TGG | + | chr3_2:91552910-91552929 | Msa0437350:intron | 20.0% |
| !! | ATAGGAAATACATATAATAG+AGG | + | chr3_2:91553059-91553078 | Msa0437350:intron | 20.0% |
| !! | TATTATCTTATATAGGATCT+TGG | - | chr3_2:91553720-91553739 | None:intergenic | 20.0% |
| !!! | TGTTTAAATAATTTTCCTAG+AGG | - | chr3_2:91554152-91554171 | None:intergenic | 20.0% |
| !!! | ATTTAAAATGCATAGGTAAA+AGG | - | chr3_2:91554228-91554247 | None:intergenic | 20.0% |
| !! | CATACATATATTCAAAACAA+TGG | - | chr3_2:91554370-91554389 | None:intergenic | 20.0% |
| !!! | CATTGTTTTGAATATATGTA+TGG | + | chr3_2:91554368-91554387 | Msa0437350:intron | 20.0% |
| !!! | GGATCTGATAATAAATTTTT+GGG | + | chr3_2:91554540-91554559 | Msa0437350:intron | 20.0% |
| !!! | GATCTGATAATAAATTTTTG+GGG | + | chr3_2:91554541-91554560 | Msa0437350:intron | 20.0% |
| !!! | TAATTTTACTTCAAAACAGA+TGG | - | chr3_2:91554614-91554633 | None:intergenic | 20.0% |
| !!! | TTTATTTAACTTCTCTGTTT+TGG | + | chr3_2:91554963-91554982 | Msa0437350:intron | 20.0% |
| !! | ATGAACAATGAATATATAGT+TGG | - | chr3_2:91555124-91555143 | None:intergenic | 20.0% |
| !! | TTTACCATGTATATATCATA+TGG | - | chr3_2:91555148-91555167 | None:intergenic | 20.0% |
| !! | AAATGTCTTATGATTCATTA+TGG | + | chr3_2:91555507-91555526 | Msa0437350:intron | 20.0% |
| !! | AAAAAAATTGAGACAACTTA+TGG | - | chr3_2:91555849-91555868 | None:intergenic | 20.0% |
| !! | TGCTTTATATTATGGAAAAA+GGG | - | chr3_2:91555876-91555895 | None:intergenic | 20.0% |
| !! | TGCTAAAACATTCATTTATT+TGG | + | chr3_2:91556250-91556269 | Msa0437350:intron | 20.0% |
| !! | GCTAAAACATTCATTTATTT+GGG | + | chr3_2:91556251-91556270 | Msa0437350:intron | 20.0% |
| !!! | TATAAAGAATCTTGTTTTTC+CGG | - | chr3_2:91556350-91556369 | None:intergenic | 20.0% |
| !!! | AAATATAAAAGTATACTCTG+CGG | + | chr3_2:91556739-91556758 | Msa0437350:intron | 20.0% |
| !! | CTCATTAAAATTATCAAACA+AGG | - | chr3_2:91556789-91556808 | None:intergenic | 20.0% |
| !!! | CTTGTTTGATAATTTTAATG+AGG | + | chr3_2:91556787-91556806 | Msa0437350:intron | 20.0% |
| !!! | TGAAAAAGATCTTCATATTT+TGG | + | chr3_2:91556848-91556867 | Msa0437350:intron | 20.0% |
| !! | TTGTCAAATTAGTCATTAAA+TGG | + | chr3_2:91557053-91557072 | Msa0437350:intron | 20.0% |
| !! | TTTGATATGCTAAAAAATGA+AGG | + | chr3_2:91557190-91557209 | Msa0437350:intron | 20.0% |
| !!! | TTGATTTGTAAAATTGTTTC+TGG | + | chr3_2:91557244-91557263 | Msa0437350:intron | 20.0% |
| !!! | TGATTTGTAAAATTGTTTCT+GGG | + | chr3_2:91557245-91557264 | Msa0437350:intron | 20.0% |
| !! | AAATAAATATGGTGATATCA+AGG | - | chr3_2:91557569-91557588 | None:intergenic | 20.0% |
| !!! | AGAAATCAAATTATTTTACG+AGG | - | chr3_2:91557606-91557625 | None:intergenic | 20.0% |
| !! | TAAATCAAAGAAGGAAATTT+CGG | - | chr3_2:91557919-91557938 | None:intergenic | 20.0% |
| !! | AGATATTGACAAAAAAAATG+TGG | + | chr3_2:91558419-91558438 | Msa0437350:intron | 20.0% |
| !!! | TCATTAAAACTACTTTTTCA+GGG | - | chr3_2:91558516-91558535 | None:intergenic | 20.0% |
| !!! | ATCATTAAAACTACTTTTTC+AGG | - | chr3_2:91558517-91558536 | None:intergenic | 20.0% |
| !!! | AATGATTTTAGTGTATCATT+TGG | + | chr3_2:91558545-91558564 | Msa0437350:intron | 20.0% |
| !!! | CTAAGACATAAATGTTTTGA+AGG | - | chr3_2:91552845-91552864 | None:intergenic | 25.0% |
| !!! | TATTCATTGATTCAAGGAAA+AGG | - | chr3_2:91553034-91553053 | None:intergenic | 25.0% |
| ! | TCCTTGAATCAATGAATAAT+TGG | + | chr3_2:91553036-91553055 | Msa0437350:intron | 25.0% |
| !!! | TCCAATTATTCATTGATTCA+AGG | - | chr3_2:91553040-91553059 | None:intergenic | 25.0% |
| ! | GAATCAATGAATAATTGGAT+AGG | + | chr3_2:91553041-91553060 | Msa0437350:intron | 25.0% |
| ! | GAAATACATATAATAGAGGA+AGG | + | chr3_2:91553063-91553082 | Msa0437350:intron | 25.0% |
| ! | TGAATATGATCAATAGTCAT+TGG | - | chr3_2:91553323-91553342 | None:intergenic | 25.0% |
| ! | GACTATTGATCATATTCATT+TGG | + | chr3_2:91553325-91553344 | Msa0437350:intron | 25.0% |
| ! | ACCAAATGAATATGATCAAT+AGG | - | chr3_2:91553400-91553419 | None:intergenic | 25.0% |
| ! | ATTTCATACTTACAAACTGA+AGG | + | chr3_2:91553460-91553479 | Msa0437350:intron | 25.0% |
| !! | TAACATAAATATGCCATTTG+TGG | - | chr3_2:91553526-91553545 | None:intergenic | 25.0% |
| ! | AAATGGCATATTTATGTTAC+TGG | + | chr3_2:91553527-91553546 | Msa0437350:CDS | 25.0% |
| ! | TAAACAGGATAAATTCAACT+AGG | - | chr3_2:91553637-91553656 | None:intergenic | 25.0% |
| ! | TATATATGTTCAGTAATGCT+TGG | + | chr3_2:91553741-91553760 | Msa0437350:intron | 25.0% |
| ! | ATATATGTTCAGTAATGCTT+GGG | + | chr3_2:91553742-91553761 | Msa0437350:intron | 25.0% |
| !! | ATGACTATTATTTAGGGTAA+TGG | - | chr3_2:91553876-91553895 | None:intergenic | 25.0% |
| ! | TTAAAATTCAAAGTACACAG+TGG | - | chr3_2:91553901-91553920 | None:intergenic | 25.0% |
| ! | TTCCACCATATATAAATACA+AGG | - | chr3_2:91554187-91554206 | None:intergenic | 25.0% |
| !!! | TAAACTTATATGGTATTGGT+AGG | - | chr3_2:91554402-91554421 | None:intergenic | 25.0% |
| ! | GAGATAAACTTATATGGTAT+TGG | - | chr3_2:91554406-91554425 | None:intergenic | 25.0% |
| !! | AAATTGTTTCTTTAGAAGAG+AGG | + | chr3_2:91554439-91554458 | Msa0437350:intron | 25.0% |
| !! | AATTGTTTCTTTAGAAGAGA+GGG | + | chr3_2:91554440-91554459 | Msa0437350:intron | 25.0% |
| !! | CGGATCTGATAATAAATTTT+TGG | + | chr3_2:91554539-91554558 | Msa0437350:intron | 25.0% |
| ! | ACAATTAATGTATGTCAACA+AGG | - | chr3_2:91555045-91555064 | None:intergenic | 25.0% |
| !!! | TATTGATTGATTTTTCGAAC+AGG | + | chr3_2:91555188-91555207 | Msa0437350:intron | 25.0% |
| ! | CAATATACTAGCATATAACA+AGG | - | chr3_2:91555340-91555359 | None:intergenic | 25.0% |
| !!! | ATATATTGCTGTTGATAACT+AGG | - | chr3_2:91555754-91555773 | None:intergenic | 25.0% |
| ! | CTTTATATTATGGAAAAAGG+GGG | - | chr3_2:91555874-91555893 | None:intergenic | 25.0% |
| ! | GCTTTATATTATGGAAAAAG+GGG | - | chr3_2:91555875-91555894 | None:intergenic | 25.0% |
| ! | GTGCTTTATATTATGGAAAA+AGG | - | chr3_2:91555877-91555896 | None:intergenic | 25.0% |
| ! | TAAGCAATCTTCTTTAATTG+TGG | + | chr3_2:91555921-91555940 | Msa0437350:intron | 25.0% |
| !!! | TTATTTGGGATTTTAGCTAA+AGG | + | chr3_2:91556265-91556284 | Msa0437350:intron | 25.0% |
| !!! | ATAAAGAATCTTGTTTTTCC+GGG | - | chr3_2:91556349-91556368 | None:intergenic | 25.0% |
| ! | AAAATTATCAAACAAGGATC+TGG | - | chr3_2:91556783-91556802 | None:intergenic | 25.0% |
| !!! | ATCTTCATATTTTGGCAAAA+AGG | + | chr3_2:91556856-91556875 | Msa0437350:intron | 25.0% |
| !! | AGAATTTAGAATACCAACAT+TGG | + | chr3_2:91556901-91556920 | Msa0437350:intron | 25.0% |
| !! | GAATTTAGAATACCAACATT+GGG | + | chr3_2:91556902-91556921 | Msa0437350:intron | 25.0% |
| ! | ATAAAGACATGATAAACTGA+AGG | + | chr3_2:91557273-91557292 | Msa0437350:intron | 25.0% |
| ! | AAACGTTTATAGTAGTTGAT+TGG | - | chr3_2:91557528-91557547 | None:intergenic | 25.0% |
| ! | GGTTAGGTCATAAATAAATA+TGG | - | chr3_2:91557580-91557599 | None:intergenic | 25.0% |
| !!! | TCAAATTATTTTACGAGGAA+AGG | - | chr3_2:91557601-91557620 | None:intergenic | 25.0% |
| ! | TTTCTTCTAGTCATTAAAAG+TGG | + | chr3_2:91557621-91557640 | Msa0437350:intron | 25.0% |
| !!! | AACATTTAAAGTAGGTTGAT+AGG | - | chr3_2:91557892-91557911 | None:intergenic | 25.0% |
| ! | GGTTGTAAATAAATCAAAGA+AGG | - | chr3_2:91557928-91557947 | None:intergenic | 25.0% |
| !!! | TCAAATTATTTTACGAGGAA+AGG | - | chr3_2:91557601-91557620 | None:intergenic | 25.0% |
| ! | ATAAAGAATTCCAACATAGA+AGG | - | chr3_2:91558000-91558019 | None:intergenic | 25.0% |
| !!! | TCTTTTCATCATGCTATTTT+AGG | + | chr3_2:91558024-91558043 | Msa0437350:intron | 25.0% |
| !!! | AAGATATCTTTATTTTCCTG+TGG | - | chr3_2:91558194-91558213 | None:intergenic | 25.0% |
| ! | ACAGGAAAATAAAGATATCT+TGG | + | chr3_2:91558193-91558212 | Msa0437350:intron | 25.0% |
| ! | CAGGAAAATAAAGATATCTT+GGG | + | chr3_2:91558194-91558213 | Msa0437350:intron | 25.0% |
| ! | ATGATACACTAAAATCATTG+AGG | - | chr3_2:91558544-91558563 | None:intergenic | 25.0% |
| ! | AAGCACTAAAAATAGAAATC+AGG | - | chr3_2:91558655-91558674 | None:intergenic | 25.0% |
| GTAACAAATTGTTTCAGTAG+TGG | + | chr3_2:91552953-91552972 | Msa0437350:intron | 30.0% | |
| !!! | ACTCAAACTTTTGAGTTAGT+TGG | - | chr3_2:91553163-91553182 | None:intergenic | 30.0% |
| ACTAACTCAAAAGTTTGAGT+TGG | + | chr3_2:91553163-91553182 | Msa0437350:intron | 30.0% | |
| ! | CAAAGAACTTTTGCAAGAAA+GGG | - | chr3_2:91553210-91553229 | None:intergenic | 30.0% |
| ! | TCAAAGAACTTTTGCAAGAA+AGG | - | chr3_2:91553211-91553230 | None:intergenic | 30.0% |
| TGAATATGATCAATAGGCAT+TGG | - | chr3_2:91553394-91553413 | None:intergenic | 30.0% | |
| GCCTATTGATCATATTCATT+TGG | + | chr3_2:91553396-91553415 | Msa0437350:intron | 30.0% | |
| TTATGTTACTGGTCATAGTT+TGG | + | chr3_2:91553538-91553557 | Msa0437350:CDS | 30.0% | |
| TATGTTACTGGTCATAGTTT+GGG | + | chr3_2:91553539-91553558 | Msa0437350:CDS | 30.0% | |
| ACTGTAGAAAGACAATAAAC+AGG | - | chr3_2:91553652-91553671 | None:intergenic | 30.0% | |
| GTGGTCATGACTATTATTTA+GGG | - | chr3_2:91553882-91553901 | None:intergenic | 30.0% | |
| AGTGGTCATGACTATTATTT+AGG | - | chr3_2:91553883-91553902 | None:intergenic | 30.0% | |
| CTTTGTTAATCATTGTGTGT+AGG | - | chr3_2:91553934-91553953 | None:intergenic | 30.0% | |
| ! | ACACCTAGTGACAAATTTTA+AGG | + | chr3_2:91553975-91553994 | Msa0437350:intron | 30.0% |
| ! | CACCTAGTGACAAATTTTAA+GGG | + | chr3_2:91553976-91553995 | Msa0437350:intron | 30.0% |
| ! | TTATCCATGCATTTGAAATG+TGG | + | chr3_2:91554077-91554096 | Msa0437350:intron | 30.0% |
| ! | TATCCATGCATTTGAAATGT+GGG | + | chr3_2:91554078-91554097 | Msa0437350:intron | 30.0% |
| TGCTGCCTTGTATTTATATA+TGG | + | chr3_2:91554179-91554198 | Msa0437350:intron | 30.0% | |
| TGCCTTGTATTTATATATGG+TGG | + | chr3_2:91554182-91554201 | Msa0437350:intron | 30.0% | |
| ATGGCAGAGATAAACTTATA+TGG | - | chr3_2:91554412-91554431 | None:intergenic | 30.0% | |
| AAGAAACAATTTGCCAAGAA+TGG | - | chr3_2:91554431-91554450 | None:intergenic | 30.0% | |
| !! | AATGTTTTTACTATGAGGAG+AGG | + | chr3_2:91554513-91554532 | Msa0437350:intron | 30.0% |
| AAAACGTCAAATCATCATGA+TGG | + | chr3_2:91554666-91554685 | Msa0437350:intron | 30.0% | |
| TCATTGATGTATTCAGAAGA+AGG | - | chr3_2:91554750-91554769 | None:intergenic | 30.0% | |
| CTTCTGAATACATCAATGAT+CGG | + | chr3_2:91554751-91554770 | Msa0437350:intron | 30.0% | |
| CATGCCATATGATATATACA+TGG | + | chr3_2:91555141-91555160 | Msa0437350:intron | 30.0% | |
| !!! | TGTATAATTTTGGTTCTCCT+AGG | + | chr3_2:91555233-91555252 | Msa0437350:CDS | 30.0% |
| !!! | GTATAATTTTGGTTCTCCTA+GGG | + | chr3_2:91555234-91555253 | Msa0437350:CDS | 30.0% |
| ATGTCCTTAATGTCTTTCAT+TGG | + | chr3_2:91555366-91555385 | Msa0437350:intron | 30.0% | |
| TAGTCCAATGAAAGACATTA+AGG | - | chr3_2:91555373-91555392 | None:intergenic | 30.0% | |
| AGTATAGTTGTCATGGAATT+TGG | + | chr3_2:91555397-91555416 | Msa0437350:intron | 30.0% | |
| AAGACTATTATGCACTCATT+TGG | - | chr3_2:91555437-91555456 | None:intergenic | 30.0% | |
| AATAGTAGACGAGTTATATG+TGG | + | chr3_2:91555539-91555558 | Msa0437350:intron | 30.0% | |
| CATCAGATCTTAATAAGAGA+TGG | + | chr3_2:91555618-91555637 | Msa0437350:intron | 30.0% | |
| CAGCAATATATAGCCTAAAT+AGG | + | chr3_2:91555763-91555782 | Msa0437350:intron | 30.0% | |
| AGTGTTAGTATCTCCTATTT+AGG | - | chr3_2:91555779-91555798 | None:intergenic | 30.0% | |
| !! | TGTGGAAGTGCTTTATATTA+TGG | - | chr3_2:91555884-91555903 | None:intergenic | 30.0% |
| ! | TATAAAGCACTTCCACATTA+TGG | + | chr3_2:91555887-91555906 | Msa0437350:intron | 30.0% |
| ATAAGAACTACACCATAATG+TGG | - | chr3_2:91555902-91555921 | None:intergenic | 30.0% | |
| !!! | ACCTTTAGTTTTCTGAGTTT+AGG | + | chr3_2:91556000-91556019 | Msa0437350:intron | 30.0% |
| TCCTAAACTCAGAAAACTAA+AGG | - | chr3_2:91556004-91556023 | None:intergenic | 30.0% | |
| ACTATAAAGGCTAGATATCT+AGG | - | chr3_2:91556049-91556068 | None:intergenic | 30.0% | |
| ! | TACTCATAGTCTTTAGAAGT+TGG | - | chr3_2:91556113-91556132 | None:intergenic | 30.0% |
| TGTTCAAACTAGAAGTTATG+AGG | + | chr3_2:91556200-91556219 | Msa0437350:intron | 30.0% | |
| CAATTGATGTCTTCTTAGTA+CGG | + | chr3_2:91556288-91556307 | Msa0437350:intron | 30.0% | |
| ! | CCATTATTCATTTTGAGCTT+TGG | - | chr3_2:91556401-91556420 | None:intergenic | 30.0% |
| CCAAAGCTCAAAATGAATAA+TGG | + | chr3_2:91556398-91556417 | Msa0437350:intron | 30.0% | |
| ATATAGCTTGGAAGACAAAA+AGG | - | chr3_2:91556472-91556491 | None:intergenic | 30.0% | |
| ! | CTTTTACCTAACATATAGCT+TGG | - | chr3_2:91556484-91556503 | None:intergenic | 30.0% |
| CTTTCACTTTCTGCAAATAT+AGG | - | chr3_2:91556560-91556579 | None:intergenic | 30.0% | |
| TACCAGGTTGTCAAATTAAT+TGG | - | chr3_2:91556813-91556832 | None:intergenic | 30.0% | |
| !! | AAGGTTTACCTTAAGTTGAT+TGG | + | chr3_2:91556875-91556894 | Msa0437350:intron | 30.0% |
| !! | AGGTTTACCTTAAGTTGATT+GGG | + | chr3_2:91556876-91556895 | Msa0437350:intron | 30.0% |
| ATTCTTACCCAATCAACTTA+AGG | - | chr3_2:91556886-91556905 | None:intergenic | 30.0% | |
| ! | ATACAAGAAATTTAGGGTGA+GGG | - | chr3_2:91557141-91557160 | None:intergenic | 30.0% |
| ! | TATACAAGAAATTTAGGGTG+AGG | - | chr3_2:91557142-91557161 | None:intergenic | 30.0% |
| AGGAAAAGAAAACCACTTTA+GGG | - | chr3_2:91557363-91557382 | None:intergenic | 30.0% | |
| AAGGAAAAGAAAACCACTTT+AGG | - | chr3_2:91557364-91557383 | None:intergenic | 30.0% | |
| !! | CACTTGGTTTTTGAAAACAA+AGG | - | chr3_2:91557383-91557402 | None:intergenic | 30.0% |
| AAATATGGTGATATCAAGGA+AGG | - | chr3_2:91557565-91557584 | None:intergenic | 30.0% | |
| !! | TTATTTTACGAGGAAAGGTT+AGG | - | chr3_2:91557596-91557615 | None:intergenic | 30.0% |
| ! | TCGGCAAAAACATTTAAAGT+AGG | - | chr3_2:91557900-91557919 | None:intergenic | 30.0% |
| !! | TTATTTTACGAGGAAAGGTT+AGG | - | chr3_2:91557596-91557615 | None:intergenic | 30.0% |
| TTCATCAGTCTTAGTTAGAT+TGG | + | chr3_2:91558121-91558140 | Msa0437350:intron | 30.0% | |
| ! | TAGTTAGATTGGACATTTTC+TGG | + | chr3_2:91558132-91558151 | Msa0437350:intron | 30.0% |
| AATAAAGATATCTTGGGAGA+TGG | + | chr3_2:91558200-91558219 | Msa0437350:CDS | 30.0% | |
| !!! | AATGTTTTGAAGGCAGTGTT+TGG | - | chr3_2:91552835-91552854 | None:intergenic | 35.0% |
| !!! | CTTTTGAGTTAGTTGGTTCA+TGG | - | chr3_2:91553156-91553175 | None:intergenic | 35.0% |
| AGTTCTTTGAGCATGAAATG+TGG | + | chr3_2:91553221-91553240 | Msa0437350:intron | 35.0% | |
| CAATGCTTATTGGAGTATGA+AGG | - | chr3_2:91553371-91553390 | None:intergenic | 35.0% | |
| ATTCTGAGTTCATCCACAAA+TGG | + | chr3_2:91553510-91553529 | Msa0437350:CDS | 35.0% | |
| CTCCCTTAAAATTTGTCACT+AGG | - | chr3_2:91553981-91554000 | None:intergenic | 35.0% | |
| ! | TGCATAAATAGACTTTTCGC+AGG | + | chr3_2:91554122-91554141 | Msa0437350:intron | 35.0% |
| ! | GCATAAATAGACTTTTCGCA+GGG | + | chr3_2:91554123-91554142 | Msa0437350:intron | 35.0% |
| TAAGCACTCAAGGGAAAATT+TGG | - | chr3_2:91554260-91554279 | None:intergenic | 35.0% | |
| GCAACAAAATAAGCACTCAA+GGG | - | chr3_2:91554269-91554288 | None:intergenic | 35.0% | |
| TGCAACAAAATAAGCACTCA+AGG | - | chr3_2:91554270-91554289 | None:intergenic | 35.0% | |
| AAGTTTATCTCTGCCATTCT+TGG | + | chr3_2:91554415-91554434 | Msa0437350:intron | 35.0% | |
| !! | GCGACAATGTTTTTACTATG+AGG | + | chr3_2:91554508-91554527 | Msa0437350:intron | 35.0% |
| ! | ACGTTTTCAAAAGAATGCAG+GGG | - | chr3_2:91554653-91554672 | None:intergenic | 35.0% |
| ! | GACGTTTTCAAAAGAATGCA+GGG | - | chr3_2:91554654-91554673 | None:intergenic | 35.0% |
| ! | TGACGTTTTCAAAAGAATGC+AGG | - | chr3_2:91554655-91554674 | None:intergenic | 35.0% |
| !! | TGATTGATTTTTCGAACAGG+CGG | + | chr3_2:91555191-91555210 | Msa0437350:intron | 35.0% |
| ! | AATCTTTTGTTACCAACCCT+AGG | - | chr3_2:91555253-91555272 | None:intergenic | 35.0% |
| TGGTAACAAAAGATTTGCAG+AGG | + | chr3_2:91555258-91555277 | Msa0437350:CDS | 35.0% | |
| ATTTGCAGAGGTTTACAATG+AGG | + | chr3_2:91555270-91555289 | Msa0437350:CDS | 35.0% | |
| CTAGAGTAGTATAGTTGTCA+TGG | + | chr3_2:91555390-91555409 | Msa0437350:intron | 35.0% | |
| TCTTATGCACAAGATACCTT+TGG | + | chr3_2:91555456-91555475 | Msa0437350:intron | 35.0% | |
| AAGACATTTGTAACATCCAG+CGG | - | chr3_2:91555496-91555515 | None:intergenic | 35.0% | |
| !! | TTTGCTATTAAGTCGAGTAG+AGG | - | chr3_2:91555573-91555592 | None:intergenic | 35.0% |
| GTAAAGATCCAGTAAGATGA+AGG | + | chr3_2:91555595-91555614 | Msa0437350:intron | 35.0% | |
| AACTATGACAGAAAGAAGAC+TGG | + | chr3_2:91555820-91555839 | Msa0437350:intron | 35.0% | |
| ACTATGACAGAAAGAAGACT+GGG | + | chr3_2:91555821-91555840 | Msa0437350:intron | 35.0% | |
| GCTAGATATCTAGGAAATGT+GGG | - | chr3_2:91556040-91556059 | None:intergenic | 35.0% | |
| GTTCTTACCTTACAAGACTA+TGG | + | chr3_2:91556087-91556106 | Msa0437350:intron | 35.0% | |
| ! | TCATCTTTGAAAATCCCCTA+TGG | + | chr3_2:91556138-91556157 | Msa0437350:intron | 35.0% |
| ! | CATCTTTGAAAATCCCCTAT+GGG | + | chr3_2:91556139-91556158 | Msa0437350:intron | 35.0% |
| TGTGAGTTTATGTTCCCATA+GGG | - | chr3_2:91556156-91556175 | None:intergenic | 35.0% | |
| TGTCTTCCAAGCTATATGTT+AGG | + | chr3_2:91556475-91556494 | Msa0437350:intron | 35.0% | |
| ATATCATACCTACAATACCC+CGG | + | chr3_2:91556607-91556626 | Msa0437350:CDS | 35.0% | |
| ATGACAATAACCCATTAACC+GGG | - | chr3_2:91556628-91556647 | None:intergenic | 35.0% | |
| CATGACAATAACCCATTAAC+CGG | - | chr3_2:91556629-91556648 | None:intergenic | 35.0% | |
| ! | TCAACCTTTATTTCTTGCTG+CGG | + | chr3_2:91556653-91556672 | Msa0437350:CDS | 35.0% |
| AATTTGACAACCTGGTATGT+AGG | + | chr3_2:91556816-91556835 | Msa0437350:intron | 35.0% | |
| ! | AATCATTTTGCCTACATACC+AGG | - | chr3_2:91556829-91556848 | None:intergenic | 35.0% |
| AATTTAAAAAAGGGCCCAAC+CGG | - | chr3_2:91556984-91557003 | None:intergenic | 35.0% | |
| ! | TACAAGAAATTTAGGGTGAG+GGG | - | chr3_2:91557140-91557159 | None:intergenic | 35.0% |
| CAAATCAAAGACTGTACAAC+TGG | - | chr3_2:91557232-91557251 | None:intergenic | 35.0% | |
| !! | TGTAAAATTGTTTCTGGGAC+AGG | + | chr3_2:91557250-91557269 | Msa0437350:intron | 35.0% |
| !! | ATTTTAAAAAAGGGCCCAAC+CGG | + | chr3_2:91557745-91557764 | Msa0437350:intron | 35.0% |
| TAATTTCGTGCCTTCTATGT+TGG | + | chr3_2:91557987-91558006 | Msa0437350:intron | 35.0% | |
| ATCAAATGCATGTTATCCAC+AGG | + | chr3_2:91558175-91558194 | Msa0437350:intron | 35.0% | |
| TCTGCTGCTATAATCACATT+TGG | + | chr3_2:91558598-91558617 | Msa0437350:intron | 35.0% | |
| CTGCTGCTATAATCACATTT+GGG | + | chr3_2:91558599-91558618 | Msa0437350:intron | 35.0% | |
| TGCTGCTATAATCACATTTG+GGG | + | chr3_2:91558600-91558619 | Msa0437350:intron | 35.0% | |
| GGATAGATCAAAGTTGTGAA+TGG | - | chr3_2:91558734-91558753 | None:intergenic | 35.0% | |
| ACTTTGATCTATCCAGATGA+AGG | + | chr3_2:91558740-91558759 | Msa0437350:CDS | 35.0% | |
| ! | TCTCTGATTCGACTTGCAAT+TGG | + | chr3_2:91552771-91552790 | Msa0437350:CDS | 40.0% |
| TGAGCATGAAATGTGGTATG+TGG | + | chr3_2:91553228-91553247 | Msa0437350:intron | 40.0% | |
| GGAGTATGAAGGAAGACAAT+TGG | - | chr3_2:91553360-91553379 | None:intergenic | 40.0% | |
| !! | TAGGCATTGGCAATGCTTAT+TGG | - | chr3_2:91553381-91553400 | None:intergenic | 40.0% |
| TGAAAGTTCAAGAGCAAGCA+AGG | - | chr3_2:91553579-91553598 | None:intergenic | 40.0% | |
| AGTAATGCTTGGGATGATAC+AGG | + | chr3_2:91553752-91553771 | Msa0437350:intron | 40.0% | |
| TCACCCACATTTCAAATGCA+TGG | - | chr3_2:91554084-91554103 | None:intergenic | 40.0% | |
| AGTCTATTTATGCAGCCTCT+AGG | - | chr3_2:91554116-91554135 | None:intergenic | 40.0% | |
| AAAAGGTGACACAGTGAATG+AGG | - | chr3_2:91554211-91554230 | None:intergenic | 40.0% | |
| TTTACTATGAGGAGAGGTGA+CGG | + | chr3_2:91554519-91554538 | Msa0437350:intron | 40.0% | |
| AGTAAATCACTCTGAGCAGT+GGG | - | chr3_2:91554567-91554586 | None:intergenic | 40.0% | |
| TAAGTGAGCACATAGTGTAC+AGG | + | chr3_2:91554813-91554832 | Msa0437350:intron | 40.0% | |
| ATCCATCACATGCTGCAAAA+AGG | - | chr3_2:91554899-91554918 | None:intergenic | 40.0% | |
| !! | GATTGATTTTTCGAACAGGC+GGG | + | chr3_2:91555192-91555211 | Msa0437350:intron | 40.0% |
| !! | ATTGATTTTTCGAACAGGCG+GGG | + | chr3_2:91555193-91555212 | Msa0437350:intron | 40.0% |
| !!! | AATTTTGGTTCTCCTAGGGT+TGG | + | chr3_2:91555238-91555257 | Msa0437350:CDS | 40.0% |
| GGCTCAATTATCAAAGCCAA+AGG | - | chr3_2:91555475-91555494 | None:intergenic | 40.0% | |
| ATCTGATGCCTTCATCTTAC+TGG | - | chr3_2:91555606-91555625 | None:intergenic | 40.0% | |
| ACACACACAAGATCAGAGTA+TGG | - | chr3_2:91555709-91555728 | None:intergenic | 40.0% | |
| TACTCTGATCTTGTGTGTGT+AGG | + | chr3_2:91555709-91555728 | Msa0437350:intron | 40.0% | |
| GGCTAGATATCTAGGAAATG+TGG | - | chr3_2:91556041-91556060 | None:intergenic | 40.0% | |
| !! | AAGTTGGCCATAGTCTTGTA+AGG | - | chr3_2:91556097-91556116 | None:intergenic | 40.0% |
| GTGAGTTTATGTTCCCATAG+GGG | - | chr3_2:91556155-91556174 | None:intergenic | 40.0% | |
| GTGTGAGTTTATGTTCCCAT+AGG | - | chr3_2:91556157-91556176 | None:intergenic | 40.0% | |
| ACATAAACTCACACTCTCTG+AGG | + | chr3_2:91556163-91556182 | Msa0437350:intron | 40.0% | |
| GGAGAATGTTCAATTAGACC+CGG | + | chr3_2:91556328-91556347 | Msa0437350:intron | 40.0% | |
| TGCAGAAAGTGAAAGATAGC+TGG | + | chr3_2:91556565-91556584 | Msa0437350:intron | 40.0% | |
| TGACAATAACCCATTAACCG+GGG | - | chr3_2:91556627-91556646 | None:intergenic | 40.0% | |
| ! | CAACCTTTATTTCTTGCTGC+GGG | + | chr3_2:91556654-91556673 | Msa0437350:CDS | 40.0% |
| ! | GGCCAATTAATTTGACAACC+TGG | + | chr3_2:91556808-91556827 | Msa0437350:intron | 40.0% |
| ATTTAAAAAAGGGCCCAACC+GGG | - | chr3_2:91556983-91557002 | None:intergenic | 40.0% | |
| AGACATGATAAACTGAAGGC+AGG | + | chr3_2:91557277-91557296 | Msa0437350:intron | 40.0% | |
| GACATGATAAACTGAAGGCA+GGG | + | chr3_2:91557278-91557297 | Msa0437350:intron | 40.0% | |
| ACATGATAAACTGAAGGCAG+GGG | + | chr3_2:91557279-91557298 | Msa0437350:intron | 40.0% | |
| AAATCAAACGCACCCTAAAG+TGG | + | chr3_2:91557348-91557367 | Msa0437350:intron | 40.0% | |
| !! | ACTTTTAAAAAGGGCCCAAC+CGG | + | chr3_2:91557426-91557445 | Msa0437350:intron | 40.0% |
| !! | TTTTAAAAAAGGGCCCAACC+GGG | + | chr3_2:91557746-91557765 | Msa0437350:intron | 40.0% |
| AGGATAAGAACGTTAGCAGT+GGG | - | chr3_2:91557872-91557891 | None:intergenic | 40.0% | |
| TAGGATAAGAACGTTAGCAG+TGG | - | chr3_2:91557873-91557892 | None:intergenic | 40.0% | |
| GTTACGAAGGTGATGTTCTT+GGG | + | chr3_2:91558222-91558241 | Msa0437350:CDS | 40.0% | |
| TTACGAAGGTGATGTTCTTG+GGG | + | chr3_2:91558223-91558242 | Msa0437350:CDS | 40.0% | |
| ! | AACTCGTTGACTATGACATC+TGG | - | chr3_2:91558257-91558276 | None:intergenic | 40.0% |
| CATGGCTGTTGGACAATCAA+GGG | - | chr3_2:91553138-91553157 | None:intergenic | 45.0% | |
| TCATGGCTGTTGGACAATCA+AGG | - | chr3_2:91553139-91553158 | None:intergenic | 45.0% | |
| ! | GTTAGTTGGTTCATGGCTGT+TGG | - | chr3_2:91553149-91553168 | None:intergenic | 45.0% |
| GTTACTGGTCATAGTTTGGG+TGG | + | chr3_2:91553542-91553561 | Msa0437350:CDS | 45.0% | |
| TCATAGTTTGGGTGGTGCAT+TGG | + | chr3_2:91553550-91553569 | Msa0437350:CDS | 45.0% | |
| GAGTAAATCACTCTGAGCAG+TGG | - | chr3_2:91554568-91554587 | None:intergenic | 45.0% | |
| ! | GTCCTTTTTGCAGCATGTGA+TGG | + | chr3_2:91554894-91554913 | Msa0437350:intron | 45.0% |
| CACACCCACGATCTGTTATT+GGG | + | chr3_2:91555945-91555964 | Msa0437350:intron | 45.0% | |
| AGTGCCCAATAACAGATCGT+GGG | - | chr3_2:91555952-91555971 | None:intergenic | 45.0% | |
| AAGTGCCCAATAACAGATCG+TGG | - | chr3_2:91555953-91555972 | None:intergenic | 45.0% | |
| ACGGCTGACAACAGACATTT+CGG | + | chr3_2:91556307-91556326 | Msa0437350:intron | 45.0% | |
| CTGGCGAATTGTGAATCACA+GGG | + | chr3_2:91556584-91556603 | Msa0437350:CDS | 45.0% | |
| ACCTACAATACCCCGGTTAA+TGG | + | chr3_2:91556614-91556633 | Msa0437350:CDS | 45.0% | |
| CCTACAATACCCCGGTTAAT+GGG | + | chr3_2:91556615-91556634 | Msa0437350:CDS | 45.0% | |
| ACTCCCGCAGCAAGAAATAA+AGG | - | chr3_2:91556660-91556679 | None:intergenic | 45.0% | |
| AATGCTCTACCACTGAGCTA+TGG | - | chr3_2:91557481-91557500 | None:intergenic | 45.0% | |
| GCATTTGACTGCAGATCAAG+AGG | + | chr3_2:91556944-91556963 | Msa0437350:intron | 45.0% | |
| !! | GGCTCAAAGAGCACTTACAA+AGG | - | chr3_2:91557084-91557103 | None:intergenic | 45.0% |
| ! | AGAAATTTAGGGTGAGGGGA+TGG | - | chr3_2:91557136-91557155 | None:intergenic | 45.0% |
| !! | CTTTTAAAAAGGGCCCAACC+GGG | + | chr3_2:91557427-91557446 | Msa0437350:intron | 45.0% |
| GCATTTGACTGCAGATCAAG+AGG | - | chr3_2:91556944-91556963 | None:intergenic | 45.0% | |
| AATGCTCTACCACTGAGCTA+TGG | + | chr3_2:91557481-91557500 | Msa0437350:intron | 45.0% | |
| TGGATCAGAATGCCAACAGT+GGG | - | chr3_2:91557508-91557527 | None:intergenic | 45.0% | |
| TTGGATCAGAATGCCAACAG+TGG | - | chr3_2:91557509-91557528 | None:intergenic | 45.0% | |
| GCATTTGACTGCAGATCAAG+AGG | - | chr3_2:91556944-91556963 | None:intergenic | 45.0% | |
| AATGCTCTACCACTGAGCTA+TGG | + | chr3_2:91557481-91557500 | Msa0437350:intron | 45.0% | |
| ATCTTGGGAGATGGTTACGA+AGG | + | chr3_2:91558209-91558228 | Msa0437350:CDS | 45.0% | |
| GGTTACGAAGGTGATGTTCT+TGG | + | chr3_2:91558221-91558240 | Msa0437350:CDS | 45.0% | |
| GTTGACTATGACATCTGGTG+TGG | - | chr3_2:91558252-91558271 | None:intergenic | 45.0% | |
| AACCAGGAGTTATAGTTCCG+AGG | - | chr3_2:91558579-91558598 | None:intergenic | 45.0% | |
| GTGATTATAGCAGCAGAACC+AGG | - | chr3_2:91558595-91558614 | None:intergenic | 45.0% | |
| !!! | CAAAAATTTAATTTAAAAAA+GGG | - | chr3_2:91556993-91557012 | None:intergenic | 5.0% |
| !!! | TTTTTTATATTGTAAAAAAA+AGG | + | chr3_2:91557648-91557667 | Msa0437350:intron | 5.0% |
| !!! | TAAAAATTTGATTTTAAAAA+AGG | + | chr3_2:91557735-91557754 | Msa0437350:intron | 5.0% |
| !!! | AAAAATTTGATTTTAAAAAA+GGG | + | chr3_2:91557736-91557755 | Msa0437350:intron | 5.0% |
| !!! | TAAAAATTTGATTTTAAAAA+AGG | + | chr3_2:91557735-91557754 | Msa0437350:intron | 5.0% |
| !!! | AAAAATTTGATTTTAAAAAA+GGG | + | chr3_2:91557736-91557755 | Msa0437350:intron | 5.0% |
| TGAAATGTGGGTGAGCCTTG+TGG | + | chr3_2:91554090-91554109 | Msa0437350:intron | 50.0% | |
| ! | GGCTTTGATAATTGAGCCGC+TGG | + | chr3_2:91555477-91555496 | Msa0437350:intron | 50.0% |
| CCAATAACAGATCGTGGGTG+TGG | - | chr3_2:91555947-91555966 | None:intergenic | 50.0% | |
| CCACACCCACGATCTGTTAT+TGG | + | chr3_2:91555944-91555963 | Msa0437350:intron | 50.0% | |
| GCTGGCGAATTGTGAATCAC+AGG | + | chr3_2:91556583-91556602 | Msa0437350:CDS | 50.0% | |
| !! | CCCATTAACCGGGGTATTGT+AGG | - | chr3_2:91556618-91556637 | None:intergenic | 50.0% |
| CTGAGCTATGGACCCAATGT+TGG | - | chr3_2:91556917-91556936 | None:intergenic | 50.0% | |
| ACATTGGGTCCATAGCTCAG+TGG | + | chr3_2:91556917-91556936 | Msa0437350:intron | 50.0% | |
| ACTGCAGATCAAGAGGTCAC+CGG | + | chr3_2:91556951-91556970 | Msa0437350:intron | 50.0% | |
| TAAGTGCTCTTTGAGCCCGA+AGG | + | chr3_2:91557087-91557106 | Msa0437350:intron | 50.0% | |
| ACTGCAGATCAAGAGGTCAC+CGG | - | chr3_2:91556951-91556970 | None:intergenic | 50.0% | |
| ACTGCAGATCAAGAGGTCAC+TGG | - | chr3_2:91556951-91556970 | None:intergenic | 50.0% | |
| GAGTTATAGTTCCGAGGTGC+GGG | - | chr3_2:91558573-91558592 | None:intergenic | 50.0% | |
| GGAGTTATAGTTCCGAGGTG+CGG | - | chr3_2:91558574-91558593 | None:intergenic | 50.0% | |
| CACCTCGGAACTATAACTCC+TGG | + | chr3_2:91558574-91558593 | Msa0437350:intron | 50.0% | |
| TATGCAGCCTCTAGGCCACA+AGG | - | chr3_2:91554108-91554127 | None:intergenic | 55.0% | |
| ! | CTTTTCGCAGGGAAGCCTCT+AGG | + | chr3_2:91554134-91554153 | Msa0437350:intron | 55.0% |
| TCCAAGGCAGGAAGACCTTC+GGG | - | chr3_2:91557105-91557124 | None:intergenic | 55.0% | |
| GTCCAAGGCAGGAAGACCTT+CGG | - | chr3_2:91557106-91557125 | None:intergenic | 55.0% | |
| AGGTCTTCCTGCCTTGGACT+AGG | + | chr3_2:91557107-91557126 | Msa0437350:intron | 55.0% | |
| ACAGTGGGTCCATAGCTCAG+TGG | - | chr3_2:91557493-91557512 | None:intergenic | 55.0% | |
| CTGAGCTATGGACCCACTGT+TGG | + | chr3_2:91557493-91557512 | Msa0437350:intron | 55.0% | |
| !! | TCACTGGTTCGAACCCGGTT+GGG | - | chr3_2:91557807-91557826 | None:intergenic | 55.0% |
| !! | AGAGGTCACTGGTTCGAACC+CGG | - | chr3_2:91557812-91557831 | None:intergenic | 55.0% |
| ATCATTTGGCACCCGCACCT+CGG | + | chr3_2:91558559-91558578 | Msa0437350:intron | 55.0% | |
| !! | AGAGGTCACCGGTTCGAACC+CGG | + | chr3_2:91556962-91556981 | Msa0437350:intron | 60.0% |
| !! | TCACCGGTTCGAACCCGGTT+GGG | + | chr3_2:91556967-91556986 | Msa0437350:intron | 60.0% |
| ATGGCGTCCTAGTCCAAGGC+AGG | - | chr3_2:91557117-91557136 | None:intergenic | 60.0% | |
| !! | TCACCGGTTCGAACCCGGTT+GGG | - | chr3_2:91556967-91556986 | None:intergenic | 60.0% |
| !! | AGAGGTCACCGGTTCGAACC+CGG | - | chr3_2:91556962-91556981 | None:intergenic | 60.0% |
| !! | GTCACTGGTTCGAACCCGGT+TGG | - | chr3_2:91557808-91557827 | None:intergenic | 60.0% |
| GCAGTGGGTCCATAGCTCAG+TGG | - | chr3_2:91557857-91557876 | None:intergenic | 60.0% | |
| GCGCGCGAGTGCATATGAAC+AGG | - | chr3_2:91558313-91558332 | None:intergenic | 60.0% | |
| ! | GGGTGAGCCTTGTGGCCTAG+AGG | + | chr3_2:91554098-91554117 | Msa0437350:intron | 65.0% |
| !! | GTCACCGGTTCGAACCCGGT+TGG | + | chr3_2:91556966-91556985 | Msa0437350:intron | 65.0% |
| GCCCGAAGGTCTTCCTGCCT+TGG | + | chr3_2:91557101-91557120 | Msa0437350:intron | 65.0% | |
| GGGGATGGCGTCCTAGTCCA+AGG | - | chr3_2:91557121-91557140 | None:intergenic | 65.0% | |
| !! | GTCACCGGTTCGAACCCGGT+TGG | - | chr3_2:91556966-91556985 | None:intergenic | 65.0% |
| GGGCCCAACCGGGTTCGAAC+CGG | - | chr3_2:91557437-91557456 | None:intergenic | 70.0% | |
| GGGCCCAACCGGGTTCGAAC+CGG | + | chr3_2:91557437-91557456 | Msa0437350:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 91552768 | 91558763 | 91552768 | ID=Msa0437350;Name=Msa0437350 |
| chr3_2 | mRNA | 91552768 | 91558763 | 91552768 | ID=Msa0437350-mRNA-1;Parent=Msa0437350;Name=Msa0437350-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.8|0.66|0.83|0.6|0.5|6|0|157 |
| chr3_2 | exon | 91552768 | 91552799 | 91552768 | ID=Msa0437350-mRNA-1:exon:27363;Parent=Msa0437350-mRNA-1 |
| chr3_2 | exon | 91553502 | 91553615 | 91553502 | ID=Msa0437350-mRNA-1:exon:27364;Parent=Msa0437350-mRNA-1 |
| chr3_2 | exon | 91555210 | 91555291 | 91555210 | ID=Msa0437350-mRNA-1:exon:27365;Parent=Msa0437350-mRNA-1 |
| chr3_2 | exon | 91556570 | 91556695 | 91556570 | ID=Msa0437350-mRNA-1:exon:27366;Parent=Msa0437350-mRNA-1 |
| chr3_2 | exon | 91558197 | 91558259 | 91558197 | ID=Msa0437350-mRNA-1:exon:27367;Parent=Msa0437350-mRNA-1 |
| chr3_2 | exon | 91558710 | 91558763 | 91558710 | ID=Msa0437350-mRNA-1:exon:27368;Parent=Msa0437350-mRNA-1 |
| chr3_2 | CDS | 91552768 | 91552799 | 91552768 | ID=Msa0437350-mRNA-1:cds;Parent=Msa0437350-mRNA-1 |
| chr3_2 | CDS | 91553502 | 91553615 | 91553502 | ID=Msa0437350-mRNA-1:cds;Parent=Msa0437350-mRNA-1 |
| chr3_2 | CDS | 91555210 | 91555291 | 91555210 | ID=Msa0437350-mRNA-1:cds;Parent=Msa0437350-mRNA-1 |
| chr3_2 | CDS | 91556570 | 91556695 | 91556570 | ID=Msa0437350-mRNA-1:cds;Parent=Msa0437350-mRNA-1 |
| chr3_2 | CDS | 91558197 | 91558259 | 91558197 | ID=Msa0437350-mRNA-1:cds;Parent=Msa0437350-mRNA-1 |
| chr3_2 | CDS | 91558710 | 91558763 | 91558710 | ID=Msa0437350-mRNA-1:cds;Parent=Msa0437350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
