AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0585230


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0585230 MtrunA17_Chr4g0013301 85.037 401 19 3 1 398 1 363 0.0 636
Msa0585230 MtrunA17_Chr2g0308681 43.678 261 117 7 1 260 1 232 6.40e-55 183
Msa0585230 MtrunA17_Chr7g0258821 34.699 366 179 12 55 380 93 438 7.25e-48 171
Msa0585230 MtrunA17_Chr1g0175641 56.818 88 36 2 127 213 71 157 4.96e-29 112
Msa0585230 MtrunA17_Chr1g0175871 45.926 135 48 7 125 239 45 174 4.65e-28 110
Msa0585230 MtrunA17_Chr1g0175571 52.427 103 45 3 117 218 109 208 5.66e-28 111
Msa0585230 MtrunA17_Chr2g0324291 46.667 90 44 1 130 215 28 117 6.88e-25 100
Msa0585230 MtrunA17_Chr2g0324281 47.727 88 38 2 127 214 15 94 2.28e-23 97.4
Msa0585230 MtrunA17_Chr5g0403521 45.977 87 46 1 132 218 35 120 7.06e-23 97.4
Msa0585230 MtrunA17_Chr1g0154561 45.055 91 48 2 128 218 29 117 9.57e-23 96.7
Msa0585230 MtrunA17_Chr4g0021321 46.392 97 42 3 127 215 41 135 1.58e-21 93.6
Msa0585230 MtrunA17_Chr2g0324261 39.496 119 58 3 103 214 18 129 5.91e-21 92.0
Msa0585230 MtrunA17_Chr2g0282171 39.091 110 50 3 116 213 11 115 1.50e-20 90.5
Msa0585230 MtrunA17_Chr4g0047371 39.423 104 54 2 125 219 25 128 3.29e-20 88.6
Msa0585230 MtrunA17_Chr8g0360011 43.182 88 44 1 130 211 33 120 4.10e-20 89.7
Msa0585230 MtrunA17_Chr4g0047381 35.514 107 59 2 123 219 22 128 2.30e-19 87.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0585230 AT2G44410.1 43.462 260 104 8 1 245 10 241 8.40e-54 186
Msa0585230 AT3G58030.4 50.365 137 57 6 113 244 114 244 3.55e-35 136
Msa0585230 AT3G58030.2 50.365 137 57 6 113 244 114 244 3.55e-35 136
Msa0585230 AT3G58030.1 50.365 137 57 6 113 244 114 244 3.55e-35 136
Msa0585230 AT3G58030.3 50.365 137 57 6 113 244 114 244 3.55e-35 136
Msa0585230 AT1G74990.1 44.860 107 58 1 125 231 10 115 1.07e-28 110
Msa0585230 AT2G42030.1 38.272 162 88 3 93 250 100 253 1.31e-28 117
Msa0585230 AT1G19310.1 48.276 87 44 1 132 218 21 106 6.79e-24 100
Msa0585230 AT4G28270.1 46.000 100 34 3 128 214 15 107 1.08e-22 95.9
Msa0585230 AT2G23780.3 45.977 87 46 1 132 218 26 111 1.33e-22 96.7
Msa0585230 AT2G23780.2 45.977 87 46 1 132 218 26 111 1.33e-22 96.7
Msa0585230 AT2G23780.1 45.977 87 46 1 132 218 26 111 1.33e-22 96.7
Msa0585230 AT4G27470.1 35.200 125 64 3 132 243 42 162 5.93e-19 86.7
Msa0585230 AT4G03510.3 43.956 91 38 3 132 214 46 131 2.30e-18 85.1
Msa0585230 AT4G03510.1 43.956 91 38 3 132 214 46 131 2.30e-18 85.1
Msa0585230 AT4G03510.2 43.956 91 38 3 132 214 46 131 2.30e-18 85.1
Msa0585230 AT4G03510.4 43.956 91 38 3 132 214 46 131 2.30e-18 85.1

Find 121 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGGGTATTATTCCAATTTA+TGG 0.104536 4_2:+5759773 Msa0585230:CDS
CTTATTCTCATAAGCTCTTT+TGG 0.191630 4_2:+5762288 Msa0585230:three_prime_UTR
CCATTTCCATGTCCATAAAT+TGG 0.194274 4_2:-5759785 None:intergenic
TTATCAACATTCCTACTTAA+AGG 0.205288 4_2:-5760352 None:intergenic
CTCTCAGGTGTGGTACTATT+AGG 0.243365 4_2:-5759998 None:intergenic
GTCGATAATGTTGCTGTTAT+AGG 0.252556 4_2:+5761869 Msa0585230:CDS
TGTAAGGATATTTGCATGTT+TGG 0.275252 4_2:+5762168 Msa0585230:three_prime_UTR
CATAACCGAATTGGTGGATT+TGG 0.278139 4_2:+5759953 Msa0585230:CDS
CTTCTGTGTCTCTGTTAAAT+AGG 0.287511 4_2:+5761843 Msa0585230:CDS
TGACTGTTTGATATAACTTA+TGG 0.289048 4_2:+5762230 Msa0585230:three_prime_UTR
TCTCAGGTGTGGTACTATTA+GGG 0.289538 4_2:-5759997 None:intergenic
GTTGATAATGTTGCTGTTGC+AGG 0.300831 4_2:+5760367 Msa0585230:CDS
CTTCTATTGTCCAAAGTATT+CGG 0.320027 4_2:+5759924 Msa0585230:CDS
CTTTGATTGTAATATTTGTT+TGG 0.349272 4_2:+5759625 Msa0585230:CDS
TGATTTGAATCAGGAGCCTT+TGG 0.350787 4_2:+5759241 Msa0585230:CDS
TATGAAACCGCCGAATACTT+TGG 0.373232 4_2:-5759934 None:intergenic
TTCGAGAGCGAGGCAGCGTC+GGG 0.374026 4_2:+5759370 Msa0585230:CDS
ATTCAGATAACCAATGTTAC+AGG 0.375175 4_2:+5759416 Msa0585230:CDS
TTCTGCTGAAAGATTAGTTC+AGG 0.376998 4_2:+5760159 Msa0585230:CDS
CGGCGGTTTCATAACCGAAT+TGG 0.383576 4_2:+5759944 Msa0585230:CDS
CCAATTTATGGACATGGAAA+TGG 0.384021 4_2:+5759785 Msa0585230:CDS
ACATTCCTTTGCTTTCGAAT+AGG 0.388726 4_2:-5759723 None:intergenic
TATGGAGCTTGATTTGAATC+AGG 0.400185 4_2:+5759232 None:intergenic
CTCTCGAAGTAATTGCTTCA+AGG 0.402049 4_2:-5759355 None:intergenic
GGAGCGGAACGATGCTGATC+AGG 0.409682 4_2:+5759484 Msa0585230:CDS
GACCATTGATATATGATTCA+AGG 0.415979 4_2:-5760183 None:intergenic
TGAACATGGTGGTTCTCAAC+AGG 0.416867 4_2:+5760066 Msa0585230:CDS
AGCTGCTGCAGCTACAGAAT+TGG 0.416919 4_2:-5760320 None:intergenic
TGCAGTTTCTCCTGTAACAT+TGG 0.419434 4_2:-5759426 None:intergenic
CTTCTCTTTCTCCTTTAAGT+AGG 0.422331 4_2:+5760341 Msa0585230:CDS
CTTCTTCTACCGTTTGATGA+AGG 0.424965 4_2:-5761941 None:intergenic
GTGGTTCTCAACAGGTTTCA+AGG 0.428291 4_2:+5760074 Msa0585230:CDS
ATCTGAATCCGAGAGGAGTT+CGG 0.434023 4_2:-5759401 None:intergenic
GTTACCTCCCCTTTACAAAC+AGG 0.438464 4_2:-5759746 None:intergenic
TTGCTTCAAGGTGTGTGATT+CGG 0.441946 4_2:-5759343 None:intergenic
GTCTGCGTGCGAGACTGAAC+AGG 0.444476 4_2:-5760034 None:intergenic
GGGATGGAAGAGATTGATAA+TGG 0.448635 4_2:+5759575 Msa0585230:CDS
AGGAATGTCCTGTTTGTAAA+GGG 0.451056 4_2:+5759738 Msa0585230:CDS
AAATGAACGCACTGATGTAC+TGG 0.451580 4_2:-5759273 None:intergenic
AGTCATTTCGATATTCTTGT+TGG 0.454214 4_2:-5761995 None:intergenic
TGACCACAACATGTCAAAAC+AGG 0.454953 4_2:-5759662 None:intergenic
TATATCAATGGTCACAATAC+AGG 0.455204 4_2:+5760193 Msa0585230:CDS
TAGAAGAAGAAGATGCTCCT+TGG 0.455800 4_2:-5759907 None:intergenic
TAAAGGGGAGGTAACTGAAT+CGG 0.458742 4_2:+5759754 Msa0585230:CDS
GGCAAACCATTGTTTCTCTC+AGG 0.458959 4_2:-5760013 None:intergenic
TTCTTCTACCGTTTGATGAA+GGG 0.463767 4_2:-5761940 None:intergenic
CTCTCAACTCTAGGTGCCTT+AGG 0.467180 4_2:-5759863 None:intergenic
TATGTTGGAAGAACTTGAAT+CGG 0.467329 4_2:+5759301 Msa0585230:CDS
AGAAGAAGAAGATGCTCCTT+GGG 0.474601 4_2:-5759906 None:intergenic
GGTAAAGTGGAGGAGAGTAG+TGG 0.474653 4_2:+5759596 Msa0585230:CDS
CGGTTTCATAACCGAATTGG+TGG 0.476371 4_2:+5759947 Msa0585230:CDS
AATCTTATTCAATAGATGTA+AGG 0.478243 4_2:+5762152 Msa0585230:three_prime_UTR
GCTCTCCAAATCCACCAATT+CGG 0.478712 4_2:-5759958 None:intergenic
AACGATGCTGATCAGGATGA+AGG 0.485394 4_2:+5759491 Msa0585230:CDS
TCAAACGGTAGAAGAAGAAA+TGG 0.486110 4_2:+5761947 Msa0585230:CDS
GGTTGCCGCCGAACTCCTCT+CGG 0.492462 4_2:+5759393 Msa0585230:CDS
CTTGACCACGACTCTCTGAC+TGG 0.492720 4_2:-5760282 None:intergenic
AGAGATTGATAATGGTAAAG+TGG 0.493881 4_2:+5759583 Msa0585230:CDS
CTTCTACCTCTAGATGAAGA+AGG 0.495035 4_2:-5760439 None:intergenic
CATTTGATAGCAAAAGCTCT+AGG 0.498838 4_2:+5759554 Msa0585230:CDS
GAGAGTTCCTCCTCGACCTA+AGG 0.502667 4_2:+5759847 Msa0585230:CDS
AAGGAATGTCCTGTTTGTAA+AGG 0.503450 4_2:+5759737 Msa0585230:CDS
AACAGCATTAAATTCTGCAA+TGG 0.508273 4_2:+5760135 Msa0585230:CDS
CTTCGAGAGCGAGGCAGCGT+CGG 0.509799 4_2:+5759369 Msa0585230:CDS
CTGTTAGACCCTTCATCAAA+CGG 0.512392 4_2:+5761932 Msa0585230:CDS
GACCTTGAATCATATATCAA+TGG 0.517570 4_2:+5760181 Msa0585230:CDS
AAAGGGGAGGTAACTGAATC+GGG 0.517863 4_2:+5759755 Msa0585230:CDS
GCGAAGAACGGAGGGAGGAG+CGG 0.521333 4_2:+5759468 Msa0585230:CDS
ATTATTCCAATTTATGGACA+TGG 0.526065 4_2:+5759779 Msa0585230:CDS
GTAAAGTGGAGGAGAGTAGT+GGG 0.535109 4_2:+5759597 Msa0585230:CDS
TACAACTGATAGAAATGTAC+AGG 0.535539 4_2:+5760402 Msa0585230:CDS
GCAACAGCAGGTGATGTTCA+AGG 0.537071 4_2:+5759446 Msa0585230:CDS
TCGAGGAGGAACTCTCAAAC+CGG 0.538001 4_2:-5759840 None:intergenic
CTAGACCCTTCTTCATCTAG+AGG 0.541703 4_2:+5760433 Msa0585230:CDS
GGGATAGTTGAAAGTGTGAA+AGG 0.543494 4_2:+5759512 Msa0585230:CDS
ACTCTAGGTGCCTTAGGTCG+AGG 0.546117 4_2:-5759857 None:intergenic
CTGATGGAAATGAAAGAAGC+CGG 0.547924 4_2:+5759821 Msa0585230:CDS
GTTGAATTTCTAGTAACAGT+AGG 0.548372 4_2:-5760238 None:intergenic
GAATTTCTAGTAACAGTAGG+AGG 0.555492 4_2:-5760235 None:intergenic
TGTCTAATACTCTCAACTCT+AGG 0.555708 4_2:-5759872 None:intergenic
GGATAGTTGAAAGTGTGAAA+GGG 0.557671 4_2:+5759513 Msa0585230:CDS
GTTTCAAGGTTGCTAGAGCA+AGG 0.560862 4_2:+5760088 Msa0585230:CDS
GATAGTTGAAAGTGTGAAAG+GGG 0.566431 4_2:+5759514 Msa0585230:CDS
GCGTTCATTTGATTCTATGT+TGG 0.571256 4_2:+5759286 Msa0585230:CDS
ACAGGAGAAACTGCAACAGC+AGG 0.572374 4_2:+5759434 Msa0585230:CDS
GTGATGTTCAAGGCGAAGAA+CGG 0.575661 4_2:+5759456 Msa0585230:CDS
CGAGAGCGAGGCAGCGTCGG+GGG 0.578008 4_2:+5759372 Msa0585230:CDS
TGGCGGCGGTGATTGTCTGA+TGG 0.578360 4_2:+5759805 Msa0585230:CDS
TAGTTGAAAGTGTGAAAGGG+GGG 0.581279 4_2:+5759516 Msa0585230:CDS
ATTTGATAGCAAAAGCTCTA+GGG 0.584132 4_2:+5759555 Msa0585230:CDS
TTCTACCTCTAGATGAAGAA+GGG 0.590516 4_2:-5760438 None:intergenic
GATTGATAATGGTAAAGTGG+AGG 0.594410 4_2:+5759586 Msa0585230:CDS
ACCATTGTTTCTCTCAGGTG+TGG 0.595758 4_2:-5760008 None:intergenic
ACGATGCTGATCAGGATGAA+GGG 0.597581 4_2:+5759492 Msa0585230:CDS
TATGGACATGGAAATGGCGG+CGG 0.603447 4_2:+5759791 Msa0585230:CDS
CAGACAGACAACAATGAACA+TGG 0.607844 4_2:+5760052 Msa0585230:CDS
GATAGCAAAAGCTCTAGGGA+TGG 0.616270 4_2:+5759559 Msa0585230:CDS
ATGTTCAAGGCGAAGAACGG+AGG 0.619140 4_2:+5759459 Msa0585230:CDS
AGACAGAAGTTGCTAACCCA+AGG 0.623915 4_2:+5759890 Msa0585230:CDS
TCGAGAGCGAGGCAGCGTCG+GGG 0.626763 4_2:+5759371 Msa0585230:CDS
TGTTCAAGGCGAAGAACGGA+GGG 0.630328 4_2:+5759460 Msa0585230:CDS
ATAGTTGAAAGTGTGAAAGG+GGG 0.631256 4_2:+5759515 Msa0585230:CDS
AAGCAATTACTTCGAGAGCG+AGG 0.636181 4_2:+5759360 Msa0585230:CDS
TGCAGCTGTAGAATCAGTCA+CGG 0.640246 4_2:-5761816 None:intergenic
ACCACACCTGAGAGAAACAA+TGG 0.640564 4_2:+5760007 Msa0585230:CDS
ATCAATGGTCACAATACAGG+AGG 0.640899 4_2:+5760196 Msa0585230:CDS
ATGTCCTGTTTGTAAAGGGG+AGG 0.641102 4_2:+5759742 Msa0585230:CDS
GTATGCCTATTCGAAAGCAA+AGG 0.642527 4_2:+5759718 Msa0585230:CDS
ATTTATGGACATGGAAATGG+CGG 0.647005 4_2:+5759788 Msa0585230:CDS
GGAATGTCCTGTTTGTAAAG+GGG 0.658869 4_2:+5759739 Msa0585230:CDS
CTATTGTCCAAAGTATTCGG+CGG 0.665724 4_2:+5759927 Msa0585230:CDS
GTACTGGTTTGATGATCCAA+AGG 0.668438 4_2:-5759257 None:intergenic
TCAAGGCGAAGAACGGAGGG+AGG 0.671112 4_2:+5759463 Msa0585230:CDS
AGGCTCAGAAATTCAGACAA+CGG 0.673554 4_2:+5761889 Msa0585230:CDS
CTAGGTGCCTTAGGTCGAGG+AGG 0.679868 4_2:-5759854 None:intergenic
TACGATAACTGATAGAAACA+CGG 0.689120 4_2:-5759698 None:intergenic
ACAAACCAGTCAGAGAGTCG+TGG 0.695607 4_2:+5760277 Msa0585230:CDS
AGTATGCATGCAAGTAAACG+AGG 0.704101 4_2:-5762060 None:intergenic
TGAATCCGAGAGGAGTTCGG+CGG 0.720440 4_2:-5759398 None:intergenic
ATTGGTTATCTGAATCCGAG+AGG 0.732391 4_2:-5759408 None:intergenic
ACAGACAACAATGAACATGG+TGG 0.773237 4_2:+5760055 Msa0585230:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGAAAATTAATTTAAAATGA+AGG + chr4_2:5761621-5761640 Msa0585230:intron 10.0%
!! CTTTGATTGTAATATTTGTT+TGG + chr4_2:5759625-5759644 Msa0585230:CDS 20.0%
!! AACATATTTGATATTTGTCT+TGG - chr4_2:5760628-5760647 None:intergenic 20.0%
!!! AGTTTTATTCAATAGATGTA+AGG + chr4_2:5760675-5760694 Msa0585230:intron 20.0%
!! TTAAACTGTTTATCCAAATA+GGG + chr4_2:5760934-5760953 Msa0585230:intron 20.0%
!! TCTAATAAAGAACATGTAAA+GGG - chr4_2:5761044-5761063 None:intergenic 20.0%
!! ATCTAATAAAGAACATGTAA+AGG - chr4_2:5761045-5761064 None:intergenic 20.0%
!!! TCTTTTGAATATCTAGTTTT+TGG + chr4_2:5761074-5761093 Msa0585230:intron 20.0%
!!! TATCATGATTGTTTCTTATA+AGG + chr4_2:5761277-5761296 Msa0585230:intron 20.0%
!!! AGTTTGTTGTATATATCATA+TGG - chr4_2:5761335-5761354 None:intergenic 20.0%
!! AATCTTATTCAATAGATGTA+AGG + chr4_2:5762152-5762171 Msa0585230:three_prime_UTR 20.0%
! ATTATTCCAATTTATGGACA+TGG + chr4_2:5759779-5759798 Msa0585230:CDS 25.0%
! TTATCAACATTCCTACTTAA+AGG - chr4_2:5760355-5760374 None:intergenic 25.0%
!! ACTTATTTGAGATTATCTAC+TGG + chr4_2:5760718-5760737 Msa0585230:intron 25.0%
! GTTAAACTGTTTATCCAAAT+AGG + chr4_2:5760933-5760952 Msa0585230:intron 25.0%
! GTTCTTTATTAGATCTATCT+TGG + chr4_2:5761051-5761070 Msa0585230:intron 25.0%
!!! TATCTAGTTTTTGGATCTTT+TGG + chr4_2:5761083-5761102 Msa0585230:intron 25.0%
!! CATAAACTATAGAGTATTAG+AGG - chr4_2:5761203-5761222 None:intergenic 25.0%
! ACTCTAATGTTAAGCTAATT+AGG - chr4_2:5761435-5761454 None:intergenic 25.0%
!! ACTTAAGTTTTCTGTCTTTA+TGG - chr4_2:5761597-5761616 None:intergenic 25.0%
! CAAAAAAAGATAGAGACTTA+TGG + chr4_2:5761736-5761755 Msa0585230:intron 25.0%
! TGACTGTTTGATATAACTTA+TGG + chr4_2:5762230-5762249 Msa0585230:three_prime_UTR 25.0%
TATGTTGGAAGAACTTGAAT+CGG + chr4_2:5759301-5759320 Msa0585230:CDS 30.0%
ATTCAGATAACCAATGTTAC+AGG + chr4_2:5759416-5759435 Msa0585230:CDS 30.0%
! ATTTGATAGCAAAAGCTCTA+GGG + chr4_2:5759555-5759574 Msa0585230:CDS 30.0%
!! AGAGATTGATAATGGTAAAG+TGG + chr4_2:5759583-5759602 Msa0585230:CDS 30.0%
TACGATAACTGATAGAAACA+CGG - chr4_2:5759701-5759720 None:intergenic 30.0%
TCGGGTATTATTCCAATTTA+TGG + chr4_2:5759773-5759792 Msa0585230:CDS 30.0%
! CTTCTATTGTCCAAAGTATT+CGG + chr4_2:5759924-5759943 Msa0585230:CDS 30.0%
AACAGCATTAAATTCTGCAA+TGG + chr4_2:5760135-5760154 Msa0585230:CDS 30.0%
GACCTTGAATCATATATCAA+TGG + chr4_2:5760181-5760200 Msa0585230:CDS 30.0%
GACCATTGATATATGATTCA+AGG - chr4_2:5760186-5760205 None:intergenic 30.0%
TATATCAATGGTCACAATAC+AGG + chr4_2:5760193-5760212 Msa0585230:CDS 30.0%
!! GTTGAATTTCTAGTAACAGT+AGG - chr4_2:5760241-5760260 None:intergenic 30.0%
TACAACTGATAGAAATGTAC+AGG + chr4_2:5760402-5760421 Msa0585230:CDS 30.0%
TCAAATAAGTCAATCCAAAC+AGG - chr4_2:5760708-5760727 None:intergenic 30.0%
CATACTGTAACAAACATAAG+AGG - chr4_2:5760978-5760997 None:intergenic 30.0%
! CTCTTATGTTTGTTACAGTA+TGG + chr4_2:5760976-5760995 Msa0585230:intron 30.0%
! TTTTGGTCAGTATTCAGATT+GGG + chr4_2:5761100-5761119 Msa0585230:intron 30.0%
GATTACTTGAATACAACCTT+TGG + chr4_2:5761170-5761189 Msa0585230:intron 30.0%
CATGCAACATGTTGTATTAT+CGG + chr4_2:5761245-5761264 Msa0585230:intron 30.0%
AGTCATTTCGATATTCTTGT+TGG - chr4_2:5761998-5762017 None:intergenic 30.0%
! AAATGACTGTCTTTTCTGTT+AGG + chr4_2:5762010-5762029 Msa0585230:exon 30.0%
! AATGACTGTCTTTTCTGTTA+GGG + chr4_2:5762011-5762030 Msa0585230:exon 30.0%
TGTAAGGATATTTGCATGTT+TGG + chr4_2:5762168-5762187 Msa0585230:three_prime_UTR 30.0%
! CTTATTCTCATAAGCTCTTT+TGG + chr4_2:5762288-5762307 Msa0585230:three_prime_UTR 30.0%
! AAGCTCTTTTGGATAACTTA+TGG + chr4_2:5762299-5762318 Msa0585230:three_prime_UTR 30.0%
GCGTTCATTTGATTCTATGT+TGG + chr4_2:5759286-5759305 Msa0585230:CDS 35.0%
! GGATAGTTGAAAGTGTGAAA+GGG + chr4_2:5759513-5759532 Msa0585230:CDS 35.0%
! GATAGTTGAAAGTGTGAAAG+GGG + chr4_2:5759514-5759533 Msa0585230:CDS 35.0%
! ATAGTTGAAAGTGTGAAAGG+GGG + chr4_2:5759515-5759534 Msa0585230:CDS 35.0%
! CATTTGATAGCAAAAGCTCT+AGG + chr4_2:5759554-5759573 Msa0585230:CDS 35.0%
!! GATTGATAATGGTAAAGTGG+AGG + chr4_2:5759586-5759605 Msa0585230:CDS 35.0%
!!! GTTGTGGTCATTTGTTTTGT+TGG + chr4_2:5759675-5759694 Msa0585230:CDS 35.0%
ACATTCCTTTGCTTTCGAAT+AGG - chr4_2:5759726-5759745 None:intergenic 35.0%
AAGGAATGTCCTGTTTGTAA+AGG + chr4_2:5759737-5759756 Msa0585230:CDS 35.0%
AGGAATGTCCTGTTTGTAAA+GGG + chr4_2:5759738-5759757 Msa0585230:CDS 35.0%
CCATTTCCATGTCCATAAAT+TGG - chr4_2:5759788-5759807 None:intergenic 35.0%
CCAATTTATGGACATGGAAA+TGG + chr4_2:5759785-5759804 Msa0585230:CDS 35.0%
ATTTATGGACATGGAAATGG+CGG + chr4_2:5759788-5759807 Msa0585230:CDS 35.0%
TGTCTAATACTCTCAACTCT+AGG - chr4_2:5759875-5759894 None:intergenic 35.0%
! TTCTGCTGAAAGATTAGTTC+AGG + chr4_2:5760159-5760178 Msa0585230:CDS 35.0%
!! GAATTTCTAGTAACAGTAGG+AGG - chr4_2:5760238-5760257 None:intergenic 35.0%
CTTCTCTTTCTCCTTTAAGT+AGG + chr4_2:5760341-5760360 Msa0585230:CDS 35.0%
TTCTACCTCTAGATGAAGAA+GGG - chr4_2:5760441-5760460 None:intergenic 35.0%
! ATGACGGTCTTTTATGTAAG+TGG + chr4_2:5760519-5760538 Msa0585230:intron 35.0%
TGTAAGGATATTTGCCTGTT+TGG + chr4_2:5760691-5760710 Msa0585230:intron 35.0%
AGAGGATATTGACAATTAGC+AGG - chr4_2:5760960-5760979 None:intergenic 35.0%
! CTTTTGGTCAGTATTCAGAT+TGG + chr4_2:5761099-5761118 Msa0585230:intron 35.0%
TATTAGAGGCTCTTATCCAA+AGG - chr4_2:5761189-5761208 None:intergenic 35.0%
GCAATGCACATGATCTTTAT+GGG - chr4_2:5761226-5761245 None:intergenic 35.0%
TGCAATGCACATGATCTTTA+TGG - chr4_2:5761227-5761246 None:intergenic 35.0%
TATTTCCACTCCTTCTGTAT+TGG + chr4_2:5761488-5761507 Msa0585230:intron 35.0%
ATCCTGTTGTTGCATGTAAT+AGG + chr4_2:5761770-5761789 Msa0585230:intron 35.0%
TCCTGTTGTTGCATGTAATA+GGG + chr4_2:5761771-5761790 Msa0585230:intron 35.0%
CTTCTGTGTCTCTGTTAAAT+AGG + chr4_2:5761843-5761862 Msa0585230:CDS 35.0%
! GTCGATAATGTTGCTGTTAT+AGG + chr4_2:5761869-5761888 Msa0585230:CDS 35.0%
TTCTTCTACCGTTTGATGAA+GGG - chr4_2:5761943-5761962 None:intergenic 35.0%
TCAAACGGTAGAAGAAGAAA+TGG + chr4_2:5761947-5761966 Msa0585230:CDS 35.0%
TGATTTGAATCAGGAGCCTT+TGG + chr4_2:5759241-5759260 Msa0585230:CDS 40.0%
!! GTACTGGTTTGATGATCCAA+AGG - chr4_2:5759260-5759279 None:intergenic 40.0%
! AAATGAACGCACTGATGTAC+TGG - chr4_2:5759276-5759295 None:intergenic 40.0%
TTGCTTCAAGGTGTGTGATT+CGG - chr4_2:5759346-5759365 None:intergenic 40.0%
CTCTCGAAGTAATTGCTTCA+AGG - chr4_2:5759358-5759377 None:intergenic 40.0%
ATTGGTTATCTGAATCCGAG+AGG - chr4_2:5759411-5759430 None:intergenic 40.0%
TGCAGTTTCTCCTGTAACAT+TGG - chr4_2:5759429-5759448 None:intergenic 40.0%
! GGGATAGTTGAAAGTGTGAA+AGG + chr4_2:5759512-5759531 Msa0585230:CDS 40.0%
! TAGTTGAAAGTGTGAAAGGG+GGG + chr4_2:5759516-5759535 Msa0585230:CDS 40.0%
GGGATGGAAGAGATTGATAA+TGG + chr4_2:5759575-5759594 Msa0585230:CDS 40.0%
!!! GATCCTGTTTTGACATGTTG+TGG + chr4_2:5759659-5759678 Msa0585230:CDS 40.0%
TGACCACAACATGTCAAAAC+AGG - chr4_2:5759665-5759684 None:intergenic 40.0%
GTATGCCTATTCGAAAGCAA+AGG + chr4_2:5759718-5759737 Msa0585230:CDS 40.0%
GGAATGTCCTGTTTGTAAAG+GGG + chr4_2:5759739-5759758 Msa0585230:CDS 40.0%
TAAAGGGGAGGTAACTGAAT+CGG + chr4_2:5759754-5759773 Msa0585230:CDS 40.0%
CTGATGGAAATGAAAGAAGC+CGG + chr4_2:5759821-5759840 Msa0585230:CDS 40.0%
AGAAGAAGAAGATGCTCCTT+GGG - chr4_2:5759909-5759928 None:intergenic 40.0%
TAGAAGAAGAAGATGCTCCT+TGG - chr4_2:5759910-5759929 None:intergenic 40.0%
! CTATTGTCCAAAGTATTCGG+CGG + chr4_2:5759927-5759946 Msa0585230:CDS 40.0%
TATGAAACCGCCGAATACTT+TGG - chr4_2:5759937-5759956 None:intergenic 40.0%
!! CATAACCGAATTGGTGGATT+TGG + chr4_2:5759953-5759972 Msa0585230:CDS 40.0%
TCTCAGGTGTGGTACTATTA+GGG - chr4_2:5760000-5760019 None:intergenic 40.0%
CAGACAGACAACAATGAACA+TGG + chr4_2:5760052-5760071 Msa0585230:CDS 40.0%
ACAGACAACAATGAACATGG+TGG + chr4_2:5760055-5760074 Msa0585230:CDS 40.0%
ATCAATGGTCACAATACAGG+AGG + chr4_2:5760196-5760215 Msa0585230:CDS 40.0%
!! GTTGATAATGTTGCTGTTGC+AGG + chr4_2:5760367-5760386 Msa0585230:CDS 40.0%
CTTCTACCTCTAGATGAAGA+AGG - chr4_2:5760442-5760461 None:intergenic 40.0%
TCTTCATCTAGAGGTAGAAG+AGG + chr4_2:5760442-5760461 Msa0585230:intron 40.0%
CGCAATCTTCTTCTTCTTCT+TGG - chr4_2:5760499-5760518 None:intergenic 40.0%
GAAGAAGAAGATTGCGATGA+CGG + chr4_2:5760503-5760522 Msa0585230:intron 40.0%
AGTATGCATGCATGTAAACG+AGG - chr4_2:5760570-5760589 None:intergenic 40.0%
TGTCTCACTTGAGTAAGTTC+AGG + chr4_2:5760999-5761018 Msa0585230:intron 40.0%
! CAACAAACTAGAAGCATGTG+TGG + chr4_2:5761346-5761365 Msa0585230:intron 40.0%
ACATGCAACAACAGGATATC+TGG - chr4_2:5761767-5761786 None:intergenic 40.0%
TCCCTATTACATGCAACAAC+AGG - chr4_2:5761775-5761794 None:intergenic 40.0%
AGGCTCAGAAATTCAGACAA+CGG + chr4_2:5761889-5761908 Msa0585230:CDS 40.0%
CTGTTAGACCCTTCATCAAA+CGG + chr4_2:5761932-5761951 Msa0585230:CDS 40.0%
CTTCTTCTACCGTTTGATGA+AGG - chr4_2:5761944-5761963 None:intergenic 40.0%
AGTATGCATGCAAGTAAACG+AGG - chr4_2:5762063-5762082 None:intergenic 40.0%
AAGCAATTACTTCGAGAGCG+AGG + chr4_2:5759360-5759379 Msa0585230:CDS 45.0%
ATCTGAATCCGAGAGGAGTT+CGG - chr4_2:5759404-5759423 None:intergenic 45.0%
GTGATGTTCAAGGCGAAGAA+CGG + chr4_2:5759456-5759475 Msa0585230:CDS 45.0%
AACGATGCTGATCAGGATGA+AGG + chr4_2:5759491-5759510 Msa0585230:CDS 45.0%
ACGATGCTGATCAGGATGAA+GGG + chr4_2:5759492-5759511 Msa0585230:CDS 45.0%
AAAGTGTGAAAGGGGGGAAA+AGG + chr4_2:5759522-5759541 Msa0585230:CDS 45.0%
!! GATAGCAAAAGCTCTAGGGA+TGG + chr4_2:5759559-5759578 Msa0585230:CDS 45.0%
GTAAAGTGGAGGAGAGTAGT+GGG + chr4_2:5759597-5759616 Msa0585230:CDS 45.0%
ATGTCCTGTTTGTAAAGGGG+AGG + chr4_2:5759742-5759761 Msa0585230:CDS 45.0%
GTTACCTCCCCTTTACAAAC+AGG - chr4_2:5759749-5759768 None:intergenic 45.0%
AAAGGGGAGGTAACTGAATC+GGG + chr4_2:5759755-5759774 Msa0585230:CDS 45.0%
AGACAGAAGTTGCTAACCCA+AGG + chr4_2:5759890-5759909 Msa0585230:CDS 45.0%
CGGTTTCATAACCGAATTGG+TGG + chr4_2:5759947-5759966 Msa0585230:CDS 45.0%
GCTCTCCAAATCCACCAATT+CGG - chr4_2:5759961-5759980 None:intergenic 45.0%
CTCTCAGGTGTGGTACTATT+AGG - chr4_2:5760001-5760020 None:intergenic 45.0%
ACCACACCTGAGAGAAACAA+TGG + chr4_2:5760007-5760026 Msa0585230:CDS 45.0%
! ACCATTGTTTCTCTCAGGTG+TGG - chr4_2:5760011-5760030 None:intergenic 45.0%
! GGCAAACCATTGTTTCTCTC+AGG - chr4_2:5760016-5760035 None:intergenic 45.0%
TGAACATGGTGGTTCTCAAC+AGG + chr4_2:5760066-5760085 Msa0585230:CDS 45.0%
GTGGTTCTCAACAGGTTTCA+AGG + chr4_2:5760074-5760093 Msa0585230:CDS 45.0%
GTTTCAAGGTTGCTAGAGCA+AGG + chr4_2:5760088-5760107 Msa0585230:CDS 45.0%
CTAGACCCTTCTTCATCTAG+AGG + chr4_2:5760433-5760452 Msa0585230:CDS 45.0%
GACAATTAGCAGGCCCTATT+TGG - chr4_2:5760950-5760969 None:intergenic 45.0%
ACCACAAACTGGAGTCAATG+AGG - chr4_2:5761134-5761153 None:intergenic 45.0%
!! TCATTGACTCCAGTTTGTGG+TGG + chr4_2:5761133-5761152 Msa0585230:intron 45.0%
TTGTGCCAATACAGAAGGAG+TGG - chr4_2:5761496-5761515 None:intergenic 45.0%
! ACTCCTTCTGTATTGGCACA+AGG + chr4_2:5761495-5761514 Msa0585230:intron 45.0%
ATCGTCATACGAGTTGCTGT+CGG - chr4_2:5761521-5761540 None:intergenic 45.0%
TGCAGCTGTAGAATCAGTCA+CGG - chr4_2:5761819-5761838 None:intergenic 45.0%
ACAGGAGAAACTGCAACAGC+AGG + chr4_2:5759434-5759453 Msa0585230:CDS 50.0%
GCAACAGCAGGTGATGTTCA+AGG + chr4_2:5759446-5759465 Msa0585230:CDS 50.0%
ATGTTCAAGGCGAAGAACGG+AGG + chr4_2:5759459-5759478 Msa0585230:CDS 50.0%
TGTTCAAGGCGAAGAACGGA+GGG + chr4_2:5759460-5759479 Msa0585230:CDS 50.0%
GGTAAAGTGGAGGAGAGTAG+TGG + chr4_2:5759596-5759615 Msa0585230:CDS 50.0%
TATGGACATGGAAATGGCGG+CGG + chr4_2:5759791-5759810 Msa0585230:CDS 50.0%
TCGAGGAGGAACTCTCAAAC+CGG - chr4_2:5759843-5759862 None:intergenic 50.0%
CTCTCAACTCTAGGTGCCTT+AGG - chr4_2:5759866-5759885 None:intergenic 50.0%
CGGCGGTTTCATAACCGAAT+TGG + chr4_2:5759944-5759963 Msa0585230:CDS 50.0%
ACAAACCAGTCAGAGAGTCG+TGG + chr4_2:5760277-5760296 Msa0585230:CDS 50.0%
AGCTGCTGCAGCTACAGAAT+TGG - chr4_2:5760323-5760342 None:intergenic 50.0%
CAAACTGGAGTCAATGAGGC+AGG - chr4_2:5761130-5761149 None:intergenic 50.0%
!! GCCTCATTGACTCCAGTTTG+TGG + chr4_2:5761130-5761149 Msa0585230:intron 50.0%
TTGACTCCAGTTTGTGGTGG+TGG + chr4_2:5761136-5761155 Msa0585230:intron 50.0%
TGACTCCAGTTTGTGGTGGT+GGG + chr4_2:5761137-5761156 Msa0585230:intron 50.0%
TGAATCCGAGAGGAGTTCGG+CGG - chr4_2:5759401-5759420 None:intergenic 55.0%
GAGAGTTCCTCCTCGACCTA+AGG + chr4_2:5759847-5759866 Msa0585230:CDS 55.0%
ACTCTAGGTGCCTTAGGTCG+AGG - chr4_2:5759860-5759879 None:intergenic 55.0%
CTTGACCACGACTCTCTGAC+TGG - chr4_2:5760285-5760304 None:intergenic 55.0%
! GACTCCAGTTTGTGGTGGTG+GGG + chr4_2:5761138-5761157 Msa0585230:intron 55.0%
ATGACCCCACCACCACAAAC+TGG - chr4_2:5761145-5761164 None:intergenic 55.0%
!! AGTTTGTGGTGGTGGGGTCA+TGG + chr4_2:5761144-5761163 Msa0585230:intron 55.0%
! CGGCCTTGTGCCAATACAGA+AGG - chr4_2:5761501-5761520 None:intergenic 55.0%
TCAAGGCGAAGAACGGAGGG+AGG + chr4_2:5759463-5759482 Msa0585230:CDS 60.0%
GGAGCGGAACGATGCTGATC+AGG + chr4_2:5759484-5759503 Msa0585230:CDS 60.0%
TGGCGGCGGTGATTGTCTGA+TGG + chr4_2:5759805-5759824 Msa0585230:CDS 60.0%
CTAGGTGCCTTAGGTCGAGG+AGG - chr4_2:5759857-5759876 None:intergenic 60.0%
GTCTGCGTGCGAGACTGAAC+AGG - chr4_2:5760037-5760056 None:intergenic 60.0%
CTTCGAGAGCGAGGCAGCGT+CGG + chr4_2:5759369-5759388 Msa0585230:CDS 65.0%
TTCGAGAGCGAGGCAGCGTC+GGG + chr4_2:5759370-5759389 Msa0585230:CDS 65.0%
GGTTGCCGCCGAACTCCTCT+CGG + chr4_2:5759393-5759412 Msa0585230:CDS 65.0%
GCGAAGAACGGAGGGAGGAG+CGG + chr4_2:5759468-5759487 Msa0585230:CDS 65.0%
TCGAGAGCGAGGCAGCGTCG+GGG + chr4_2:5759371-5759390 Msa0585230:CDS 70.0%
! CGAGAGCGAGGCAGCGTCGG+GGG + chr4_2:5759372-5759391 Msa0585230:CDS 75.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 5759233 5762347 5759233 ID=Msa0585230;Name=Msa0585230
chr4_2 mRNA 5759233 5762347 5759233 ID=Msa0585230-mRNA-1;Parent=Msa0585230;Name=Msa0585230-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0.5|1|1|1|2|332|481
chr4_2 exon 5759233 5760454 5759233 ID=Msa0585230-mRNA-1:exon:1366;Parent=Msa0585230-mRNA-1
chr4_2 exon 5761792 5762347 5761792 ID=Msa0585230-mRNA-1:exon:1367;Parent=Msa0585230-mRNA-1
chr4_2 CDS 5759233 5760454 5759233 ID=Msa0585230-mRNA-1:cds;Parent=Msa0585230-mRNA-1
chr4_2 CDS 5761792 5762015 5761792 ID=Msa0585230-mRNA-1:cds;Parent=Msa0585230-mRNA-1
chr4_2 three_prime_UTR 5762016 5762347 5762016 ID=Msa0585230-mRNA-1:three_prime_utr;Parent=Msa0585230-mRNA-1
Gene Sequence

>Msa0585230

ATGGAGCTTGATTTGAATCAGGAGCCTTTGGATCATCAAACCAGTACATCAGTGCGTTCATTTGATTCTATGTTGGAAGAACTTGAATCGGCTGAAGAAAATATACGAAACCGAATCACACACCTTGAAGCAATTACTTCGAGAGCGAGGCAGCGTCGGGGGTTGCCGCCGAACTCCTCTCGGATTCAGATAACCAATGTTACAGGAGAAACTGCAACAGCAGGTGATGTTCAAGGCGAAGAACGGAGGGAGGAGCGGAACGATGCTGATCAGGATGAAGGGATAGTTGAAAGTGTGAAAGGGGGGAAAAGGAAAAGTTCGCATTTGATAGCAAAAGCTCTAGGGATGGAAGAGATTGATAATGGTAAAGTGGAGGAGAGTAGTGGGAATTTCTTTGATTGTAATATTTGTTTGGATATTGCAAGAGATCCTGTTTTGACATGTTGTGGTCATTTGTTTTGTTGGCCGTGTTTCTATCAGTTATCGTATGCCTATTCGAAAGCAAAGGAATGTCCTGTTTGTAAAGGGGAGGTAACTGAATCGGGTATTATTCCAATTTATGGACATGGAAATGGCGGCGGTGATTGTCTGATGGAAATGAAAGAAGCCGGTTTGAGAGTTCCTCCTCGACCTAAGGCACCTAGAGTTGAGAGTATTAGACAGAAGTTGCTAACCCAAGGAGCATCTTCTTCTTCTATTGTCCAAAGTATTCGGCGGTTTCATAACCGAATTGGTGGATTTGGAGAGCAAGTTCAGTTAGAAAGCCCTAATAGTACCACACCTGAGAGAAACAATGGTTTGCCTGTTCAGTCTCGCACGCAGACAGACAACAATGAACATGGTGGTTCTCAACAGGTTTCAAGGTTGCTAGAGCAAGGAGCTTCTTCGTTTTCGTCACTTTCAACAGCATTAAATTCTGCAATGGATTCTGCTGAAAGATTAGTTCAGGACCTTGAATCATATATCAATGGTCACAATACAGGAGGAAGCAGAGAGCAAAATCCTCCTACTGTTACTAGAAATTCAACTTTAAGTGTCGCTGCTACAAACCAGTCAGAGAGTCGTGGTCAAGATGTTGTTGATCTGACCAATTCTGTAGCTGCAGCAGCTTCTCTTTCTCCTTTAAGTAGGAATGTTGATAATGTTGCTGTTGCAGGCTCACAAATTCATACAACTGATAGAAATGTACAGGTTAGTTTGCTAGACCCTTCTTCATCTAGAGGGAATCTTGCTCAAGATGTTGTTGCCGTGACTGATTCTACAGCTGCAGCAGCTTCTGTGTCTCTGTTAAATAGGAATGTCGATAATGTTGCTGTTATAGGCTCAGAAATTCAGACAACGGATAGAAACTTACAGATTAGACTGTTAGACCCTTCATCAAACGGTAGAAGAAGAAATGGCGTTTCAAGACAAGTTTCAAATGAACCAACAAGAATATCGAAATGA

Protein sequence

>Msa0585230

MELDLNQEPLDHQTSTSVRSFDSMLEELESAEENIRNRITHLEAITSRARQRRGLPPNSSRIQITNVTGETATAGDVQGEERREERNDADQDEGIVESVKGGKRKSSHLIAKALGMEEIDNGKVEESSGNFFDCNICLDIARDPVLTCCGHLFCWPCFYQLSYAYSKAKECPVCKGEVTESGIIPIYGHGNGGGDCLMEMKEAGLRVPPRPKAPRVESIRQKLLTQGASSSSIVQSIRRFHNRIGGFGEQVQLESPNSTTPERNNGLPVQSRTQTDNNEHGGSQQVSRLLEQGASSFSSLSTALNSAMDSAERLVQDLESYINGHNTGGSREQNPPTVTRNSTLSVAATNQSESRGQDVVDLTNSVAAAASLSPLSRNVDNVAVAGSQIHTTDRNVQVSLLDPSSSRGNLAQDVVAVTDSTAAAASVSLLNRNVDNVAVIGSEIQTTDRNLQIRLLDPSSNGRRRNGVSRQVSNEPTRISK*