AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0339620


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0339620 MtrunA17_Chr2g0328241 94.838 678 35 0 1 678 1 678 0.0 1208
Msa0339620 MtrunA17_Chr2g0328251 78.242 694 135 1 1 678 1 694 0.0 1048
Msa0339620 MtrunA17_Chr4g0024031 75.354 706 110 4 1 678 1 670 0.0 969
Msa0339620 MtrunA17_Chr2g0327251 73.884 605 114 3 74 678 8 568 0.0 835
Msa0339620 MtrunA17_Chr2g0328231 73.590 390 62 4 305 678 2 366 0.0 529
Msa0339620 MtrunA17_Chr3g0111661 39.793 676 343 13 10 673 13 636 4.54e-151 452
Msa0339620 MtrunA17_Chr5g0435301 38.405 677 357 17 16 676 487 1119 1.34e-134 423
Msa0339620 MtrunA17_Chr4g0071151 76.046 263 47 3 420 678 3 253 2.07e-132 390
Msa0339620 MtrunA17_Chr4g0074301 36.553 673 352 16 16 676 19 628 3.16e-113 354
Msa0339620 MtrunA17_Chr4g0001231 35.479 668 352 18 21 676 24 624 9.07e-112 350
Msa0339620 MtrunA17_Chr4g0070931 35.830 681 346 17 16 676 19 628 3.28e-111 348
Msa0339620 MtrunA17_Chr4g0071141 79.130 115 24 0 306 420 3 117 5.57e-50 170
Msa0339620 MtrunA17_Chr3g0111741 42.857 231 115 5 447 676 123 337 7.98e-45 164
Msa0339620 MtrunA17_Chr3g0111731 36.134 238 125 7 440 676 2 213 4.83e-28 113
Msa0339620 MtrunA17_Chr1g0176351 59.140 93 35 2 1 93 1 90 1.81e-27 110
Msa0339620 MtrunA17_Chr8g0389491 62.791 86 29 2 3 88 65 147 3.18e-25 103
Msa0339620 MtrunA17_Chr4g0074271 25.761 427 235 12 16 428 36 394 7.76e-23 102
Msa0339620 MtrunA17_Chr4g0074271 62.500 64 24 0 603 666 384 447 1.14e-18 89.4
Msa0339620 MtrunA17_Chr3g0111691 50.000 76 37 1 601 676 15 89 4.12e-17 77.4
Msa0339620 MtrunA17_Chr8g0356091 57.500 80 34 0 65 144 3 82 1.29e-16 77.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0339620 AT1G13790.2 48.393 529 251 6 145 669 216 726 1.62e-145 441
Msa0339620 AT1G13790.2 49.333 75 33 3 17 88 11 83 4.65e-11 66.6
Msa0339620 AT1G13790.1 48.393 529 251 6 145 669 216 726 1.62e-145 441
Msa0339620 AT1G13790.1 49.333 75 33 3 17 88 11 83 4.65e-11 66.6
Msa0339620 AT3G48670.2 35.407 675 368 14 16 676 24 644 2.03e-115 360
Msa0339620 AT3G48670.1 35.407 675 368 14 16 676 24 644 2.03e-115 360
Msa0339620 AT3G48670.3 35.407 675 368 14 16 676 24 644 2.03e-115 360
Msa0339620 AT3G12550.5 35.103 678 376 14 16 677 8 637 3.52e-113 354
Msa0339620 AT3G12550.4 35.052 679 376 15 16 677 8 638 2.48e-112 352
Msa0339620 AT3G12550.2 35.052 679 376 15 16 677 8 638 2.48e-112 352
Msa0339620 AT3G12550.1 35.052 679 376 15 16 677 8 638 2.48e-112 352
Msa0339620 AT1G15910.1 34.661 678 366 14 16 677 18 634 5.67e-110 346
Msa0339620 AT5G59390.2 38.783 526 296 9 148 667 34 539 1.66e-107 337
Msa0339620 AT5G59390.4 38.783 526 296 9 148 667 34 539 1.66e-107 337
Msa0339620 AT5G59390.3 38.783 526 296 9 148 667 34 539 1.66e-107 337
Msa0339620 AT4G00380.1 34.570 674 374 14 15 677 18 635 5.22e-106 335
Msa0339620 AT4G00380.3 34.570 674 374 14 15 677 18 635 5.22e-106 335
Msa0339620 AT5G59390.1 38.418 531 296 10 148 667 34 544 3.04e-105 331
Msa0339620 AT5G59390.5 38.418 531 296 10 148 667 34 544 3.04e-105 331
Msa0339620 AT4G00380.2 37.477 539 308 8 147 677 90 607 8.79e-104 329
Msa0339620 AT1G80790.1 35.484 682 355 16 15 677 19 634 1.42e-102 327
Msa0339620 AT1G80790.2 35.484 682 355 16 15 677 19 634 1.42e-102 327
Msa0339620 AT4G01180.1 37.823 542 281 11 148 667 32 539 5.63e-100 317
Msa0339620 AT3G12550.3 32.601 592 335 14 16 591 8 551 1.61e-79 264
Msa0339620 AT4G01780.1 31.828 465 208 10 215 676 111 469 3.39e-59 207
Msa0339620 AT1G80790.3 31.130 469 252 13 15 464 19 435 1.32e-55 197
Msa0339620 AT3G29375.3 43.810 210 96 4 468 676 38 226 9.21e-42 152
Msa0339620 AT3G29375.1 43.868 212 97 4 466 676 159 349 7.11e-40 150
Msa0339620 AT3G29375.2 39.231 130 59 3 466 594 36 146 1.31e-14 72.8
Msa0339620 AT2G16490.1 41.667 72 42 0 602 673 74 145 3.04e-13 68.9

Find 171 sgRNAs with CRISPR-Local

Find 295 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCTTTGCCATTGTTGAATT+TGG 0.062386 2_4:+60873400 Msa0339620:CDS
TTCATCAGTCTTCTGCTTTA+AGG 0.090360 2_4:-60873686 None:intergenic
AGAGGGATTACTTAGGTTTA+AGG 0.106130 2_4:+60873491 Msa0339620:CDS
GAGACATGCTTCCAGAATTT+TGG 0.107290 2_4:+60872964 Msa0339620:CDS
ATTTCCATTGCCTAATTAAA+TGG 0.115767 2_4:-60876394 None:intergenic
GTGGATTTGAAAACAGTTTC+TGG 0.144084 2_4:+60873607 Msa0339620:CDS
GAAGTTAGAGAGGAGCTTTC+AGG 0.211680 2_4:+60873453 Msa0339620:CDS
TTAGAAAAGAGAGAGATAAT+AGG 0.229683 2_4:-60872139 None:intergenic
ATGTTAAAGTTGATAGAATT+AGG 0.264382 2_4:+60873059 Msa0339620:CDS
TAGGCAATGGAAATCAAATA+AGG 0.267301 2_4:+60876403 Msa0339620:CDS
TCATGATGACTATAATTTAA+AGG 0.274839 2_4:+60873555 Msa0339620:CDS
ATGGCTCGAGGAGCCTTCTT+TGG 0.276297 2_4:-60875732 None:intergenic
ATATCATGTAGGAGTACTTT+TGG 0.281384 2_4:+60876591 Msa0339620:three_prime_UTR
AAACTTATTGAGGCTTCATT+TGG 0.288030 2_4:+60876432 Msa0339620:exon
CCAACCATTGGCATTGTGAT+TGG 0.291418 2_4:-60876531 None:intergenic
GTTGATAGAATTAGGTTATC+TGG 0.300562 2_4:+60873067 Msa0339620:CDS
TAGAAAAGAGAGAGATAATA+GGG 0.311646 2_4:-60872138 None:intergenic
GAGCGAGGAGATAGACTATT+TGG 0.320283 2_4:+60873520 Msa0339620:CDS
GCAGGTTGAACGCGAGTATC+AGG 0.324478 2_4:+60874030 Msa0339620:CDS
AGTCTTCTGCTTTAAGGTAT+TGG 0.341440 2_4:-60873680 None:intergenic
ACGGCTGAAAGGAGCTTTCC+AGG 0.341751 2_4:+60874750 Msa0339620:CDS
GGAAATTTGAAATTGTCTAT+TGG 0.348064 2_4:+60876634 Msa0339620:three_prime_UTR
AAAGTTTGAAGGATGAGTTC+GGG 0.354846 2_4:+60876240 Msa0339620:CDS
GAAGAATCATAAGAAAATTA+AGG 0.355037 2_4:+60873309 Msa0339620:CDS
AAAACTGGAGGAAATCAAAA+TGG 0.356376 2_4:+60874813 Msa0339620:CDS
AAAGCAGAAGACTGATGAAT+TGG 0.362538 2_4:+60873690 Msa0339620:CDS
AGGGTGTTTCCCATTTAATT+AGG 0.364498 2_4:+60876384 Msa0339620:CDS
GAGGGATTACTTAGGTTTAA+GGG 0.365824 2_4:+60873492 Msa0339620:CDS
TCCCTAAAATTCCAGAGTTC+CGG 0.369716 2_4:-60876338 None:intergenic
AAAGCGAAGACGCTTGTCTT+TGG 0.372401 2_4:+60873652 Msa0339620:CDS
AGCTCAAAATCTCTGATTCC+AGG 0.381907 2_4:+60872888 Msa0339620:CDS
CACAGCGTTGTAACTCTAAT+CGG 0.385225 2_4:-60873358 None:intergenic
TGAAATAGCTAGGCGGGAAC+TGG 0.386220 2_4:+60874072 Msa0339620:CDS
CATTTCCAGAAAATTTCCTT+AGG 0.386875 2_4:+60872269 Msa0339620:five_prime_UTR
TGCAAAACAAGCATTGGAAT+TGG 0.388740 2_4:+60874720 Msa0339620:CDS
ACGCGAGTCACCCAAAATTC+TGG 0.391249 2_4:-60872975 None:intergenic
TGGCTCGAGGAGCCTTCTTT+GGG 0.396617 2_4:-60875731 None:intergenic
TTTCCTTGTTCGCAGTGGAT+TGG 0.397924 2_4:+60875705 Msa0339620:intron
AACTTTGAACGGATGCCAGC+TGG 0.400936 2_4:-60875928 None:intergenic
GCAAAGGGTGTTTGTCCTCT+AGG 0.401490 2_4:-60873385 None:intergenic
CTCCAATGTGATTCATTACC+TGG 0.402190 2_4:-60874768 None:intergenic
TTTGATCCATCACTTTCCTT+AGG 0.403042 2_4:-60873750 None:intergenic
TTCATCAGAAAACTTTCTCT+TGG 0.404556 2_4:-60875808 None:intergenic
ATTCTAGCTGTAACTGACTT+TGG 0.405113 2_4:+60876502 Msa0339620:three_prime_UTR
TTTCCATTGCCTAATTAAAT+GGG 0.407148 2_4:-60876393 None:intergenic
CAAAGGGTGTTTGTCCTCTA+GGG 0.435599 2_4:-60873384 None:intergenic
GAAGACGCTTGTCTTTGGTT+TGG 0.437340 2_4:+60873657 Msa0339620:CDS
ATCAAAACATACTCATGATT+CGG 0.438153 2_4:+60872805 Msa0339620:CDS
AGGAGGAGCTGAACATGAAA+GGG 0.453703 2_4:+60873329 Msa0339620:CDS
AAAAGTTTGAAGGATGAGTT+CGG 0.454559 2_4:+60876239 Msa0339620:CDS
TTGCATCAAGTCCTCTCTCC+AGG 0.454987 2_4:-60874702 None:intergenic
TCCAAATTCAACAATGGCAA+AGG 0.455840 2_4:-60873401 None:intergenic
GGAAATCAAAATGGAGCTGC+AGG 0.455953 2_4:+60874822 Msa0339620:CDS
TATAATTTAAAGGATATAGT+TGG 0.456368 2_4:+60873565 Msa0339620:CDS
TTACTTAGGTTTAAGGGAGC+AGG 0.460984 2_4:+60873498 Msa0339620:CDS
AAATTCCAGAGTTCCGGTAC+TGG 0.463412 2_4:-60876332 None:intergenic
AACTTATTGAGGCTTCATTT+GGG 0.464471 2_4:+60876433 Msa0339620:exon
ACGTATTATGAATGTCGATA+AGG 0.465602 2_4:+60873174 Msa0339620:CDS
GTCTTTGGCTGAAGAACATA+AGG 0.465805 2_4:+60874553 Msa0339620:CDS
CCAAATTCAACAATGGCAAA+GGG 0.469750 2_4:-60873400 None:intergenic
TAGATATTACGAAGACTTGA+AGG 0.470004 2_4:+60872847 Msa0339620:CDS
AGAAGAGGAGTTGGAAGGCG+TGG 0.472369 2_4:+60874849 Msa0339620:CDS
GACACTAGAAAATGATGAAA+CGG 0.472967 2_4:-60872180 None:intergenic
CTGGCCATGGATGGTCATAT+TGG 0.473776 2_4:+60873240 Msa0339620:CDS
AGGCAGAGCACTGTGGTAAG+AGG 0.475875 2_4:+60873473 Msa0339620:CDS
GAGCCATAATTTCTGTGAAA+AGG 0.480154 2_4:+60875748 Msa0339620:CDS
CATAATTTCTGTGAAAAGGA+TGG 0.481577 2_4:+60875752 Msa0339620:CDS
ATGAGTTGTTTGTCTGGCCA+TGG 0.481884 2_4:+60873227 Msa0339620:CDS
AGGCAATGGAAATCAAATAA+GGG 0.482017 2_4:+60876404 Msa0339620:CDS
AGATTTGAACGCGGAATCAA+CGG 0.490502 2_4:-60872348 None:intergenic
TTGATGATGAGTTGTTTGTC+TGG 0.490771 2_4:+60873221 Msa0339620:CDS
CGTATTATGAATGTCGATAA+GGG 0.494169 2_4:+60873175 Msa0339620:CDS
TTGAATGTTGCAGAAAGAAA+AGG 0.497168 2_4:+60874654 Msa0339620:intron
GAAGGATGAGTTCGGGGATG+AGG 0.499124 2_4:+60876247 Msa0339620:CDS
AATTATGGTGTTACCTTGTG+CGG 0.501085 2_4:-60872400 None:intergenic
TGAACTCAAGTCCCGTGAAA+AGG 0.503695 2_4:+60874108 Msa0339620:CDS
CGAAAAGCGGAAAGTATGTT+GGG 0.505354 2_4:+60873287 Msa0339620:CDS
GCAAAACGGACAGCGATACC+TGG 0.507749 2_4:-60872906 None:intergenic
ATTTCCAGAAAATTTCCTTA+GGG 0.509069 2_4:+60872270 Msa0339620:five_prime_UTR
CTTTGAAAATGTATATTGAA+AGG 0.510087 2_4:+60873029 Msa0339620:CDS
TTTCCCATTTAATTAGGCAA+TGG 0.511049 2_4:+60876390 Msa0339620:CDS
CCGAAAAGCGGAAAGTATGT+TGG 0.511071 2_4:+60873286 Msa0339620:CDS
CAGAGAAAATAAACGTGACC+TGG 0.511365 2_4:-60872052 None:intergenic
GGTACCCAGTACCGGAACTC+TGG 0.513974 2_4:+60876327 Msa0339620:CDS
AAGGGAAAGAAAACTTATTG+AGG 0.514142 2_4:+60876422 Msa0339620:CDS
GGATCATGAAATAGCTAGGC+GGG 0.517645 2_4:+60874066 Msa0339620:CDS
TTATCAGTCTCAACTTTGAA+CGG 0.522646 2_4:-60875939 None:intergenic
AAGGAGGAGCTGAACATGAA+AGG 0.522988 2_4:+60873328 Msa0339620:CDS
ACTTGATGCAAAACAAGCAT+TGG 0.525557 2_4:+60874714 Msa0339620:CDS
GGCAATAGAAGAGCAACAAA+AGG 0.535693 2_4:+60874514 Msa0339620:CDS
TAATCCTTGTTGTAGCAAAA+CGG 0.536850 2_4:-60872920 None:intergenic
CGAAGGATCATGAAATAGCT+AGG 0.538005 2_4:+60874062 Msa0339620:CDS
TTTGGGTGACTCGCGTGAGA+CGG 0.539435 2_4:+60872982 Msa0339620:CDS
ACTTTGAACGGATGCCAGCT+GGG 0.546027 2_4:-60875927 None:intergenic
AAAATAAACGTGACCTGGGT+GGG 0.546156 2_4:-60872047 None:intergenic
TGCATTCCTAAGGAAAGTGA+TGG 0.547893 2_4:+60873744 Msa0339620:CDS
TGATAGAATTGCTAGTGATA+AGG 0.548910 2_4:+60873090 Msa0339620:CDS
TGTGGTAAGAGGGATTACTT+AGG 0.550144 2_4:+60873484 Msa0339620:CDS
AGAAATCAGCAAGATGCGGC+AGG 0.552419 2_4:+60874012 Msa0339620:intron
AGGAAGGAAAGCCTCGTTGA+AGG 0.554478 2_4:+60876361 Msa0339620:CDS
GGCAGAGCACTGTGGTAAGA+GGG 0.555245 2_4:+60873474 Msa0339620:CDS
TAGTGGTAGGTACCCAGTAC+CGG 0.555492 2_4:+60876319 Msa0339620:CDS
TTCACAGAAATTATGGCTCG+AGG 0.555555 2_4:-60875744 None:intergenic
GTGGATTGGATGCCCAAAGA+AGG 0.556146 2_4:+60875719 Msa0339620:intron
AATAATTACTAATATCATGT+AGG 0.556605 2_4:+60876580 Msa0339620:three_prime_UTR
TGCAGTAGCTACAGCTCTGA+AGG 0.557138 2_4:+60876277 Msa0339620:CDS
GGTACTGGGTACCTACCACT+AGG 0.560561 2_4:-60876317 None:intergenic
AGATAGACTATTTGGCTGGA+TGG 0.561061 2_4:+60873528 Msa0339620:CDS
GGTTCAAACTTAGAAACGAG+TGG 0.562727 2_4:+60876613 Msa0339620:three_prime_UTR
ATTATGGTGTTACCTTGTGC+GGG 0.563111 2_4:-60872399 None:intergenic
GAAGTATTAACACCAACCAT+TGG 0.572339 2_4:-60876543 None:intergenic
ATGAAGAATACGAAACCCTA+AGG 0.572830 2_4:-60872285 None:intergenic
GAAAAGAAGCTGAGGACACA+AGG 0.574290 2_4:+60873629 Msa0339620:CDS
ATAGAATTAGACTTAAATGC+AGG 0.574755 2_4:+60876466 Msa0339620:three_prime_UTR
ATGAGGCTAATGCATTCCTA+AGG 0.574769 2_4:+60873734 Msa0339620:CDS
GTTGTTTGTCTGGCCATGGA+TGG 0.574875 2_4:+60873231 Msa0339620:CDS
ATAATTTCTGTGAAAAGGAT+GGG 0.575703 2_4:+60875753 Msa0339620:CDS
AATTCCAGAGTTCCGGTACT+GGG 0.576644 2_4:-60876331 None:intergenic
CAAACACCTGAAGGAAAATG+TGG 0.582813 2_4:+60873588 Msa0339620:CDS
CAATCGAGTGGTGCTCAAAG+TGG 0.583300 2_4:+60875886 Msa0339620:CDS
CTAGGCGGGAACTGGAAGCT+CGG 0.585718 2_4:+60874080 Msa0339620:CDS
TATAGTTGGCAAACACCTGA+AGG 0.588147 2_4:+60873579 Msa0339620:CDS
AAGTTGAGACTGATAAAGAC+GGG 0.588269 2_4:+60875946 Msa0339620:CDS
AATCGAGTGGTGCTCAAAGT+GGG 0.588592 2_4:+60875887 Msa0339620:CDS
TTGAGTAATCTTCCCGCACA+AGG 0.590110 2_4:+60872387 Msa0339620:five_prime_UTR
AAAATTCATGACCTGGAGAG+AGG 0.591924 2_4:+60874691 Msa0339620:CDS
CCAATCACAATGCCAATGGT+TGG 0.592253 2_4:+60876531 Msa0339620:three_prime_UTR
TTAGCCAATATGACCATCCA+TGG 0.593136 2_4:-60873244 None:intergenic
GAGGAGATAGACTATTTGGC+TGG 0.593752 2_4:+60873524 Msa0339620:CDS
TTATTGAGGCTTCATTTGGG+TGG 0.594676 2_4:+60876436 Msa0339620:exon
CATTGGAATTGGAGATAGAA+CGG 0.595258 2_4:+60874731 Msa0339620:CDS
GAAAATAAACGTGACCTGGG+TGG 0.601475 2_4:-60872048 None:intergenic
CTTGAAGGATGATTACTACA+AGG 0.601753 2_4:+60872862 Msa0339620:CDS
TTCCAGGTAATGAATCACAT+TGG 0.602846 2_4:+60874766 Msa0339620:CDS
TTGGAGATAGAACGGCTGAA+AGG 0.603749 2_4:+60874739 Msa0339620:CDS
TGTTGAATTTGGAAAAGAGT+GGG 0.604730 2_4:+60873411 Msa0339620:CDS
ACTGTCTTAAAGATCCCAGC+TGG 0.606195 2_4:+60875913 Msa0339620:CDS
GGTTTAAGGGAGCAGGAGCG+AGG 0.606961 2_4:+60873505 Msa0339620:CDS
AAAGTTGAGACTGATAAAGA+CGG 0.607016 2_4:+60875945 Msa0339620:CDS
ATTGCTAGTGATAAGGTACC+TGG 0.607340 2_4:+60873097 Msa0339620:CDS
TCACAAGAAAATTCATGACC+TGG 0.607531 2_4:+60874684 Msa0339620:CDS
AAGGAAAGCCTCGTTGAAGG+AGG 0.608173 2_4:+60876364 Msa0339620:CDS
TGATAAAGACGGGAAATCCA+TGG 0.608822 2_4:+60875956 Msa0339620:CDS
CAATCCAATCACAATGCCAA+TGG 0.614220 2_4:+60876527 Msa0339620:three_prime_UTR
TTGTTGAATTTGGAAAAGAG+TGG 0.617280 2_4:+60873410 Msa0339620:CDS
AGGAAAGCCTCGTTGAAGGA+GGG 0.621359 2_4:+60876365 Msa0339620:CDS
GGAAGATCTTCAACAGACAC+TGG 0.622918 2_4:+60874870 Msa0339620:CDS
ACAATGCTATGAAGTTAGAG+AGG 0.632206 2_4:+60873443 Msa0339620:CDS
GGCAATTGAAAGCAATCGAG+TGG 0.635070 2_4:+60875874 Msa0339620:CDS
TTGTTGTTTACAGAATGAGA+TGG 0.635228 2_4:+60874493 Msa0339620:intron
GTACTGGGTACCTACCACTA+GGG 0.635409 2_4:-60876316 None:intergenic
GTATCAGGAGAAAGTATCGA+AGG 0.637654 2_4:+60874045 Msa0339620:CDS
GAATTTGGAAAAGAGTGGGA+TGG 0.639455 2_4:+60873415 Msa0339620:CDS
TCACTAGCATTACTAACACC+AGG 0.643930 2_4:-60873115 None:intergenic
ACGAGTACAACCCTAGTGGT+AGG 0.644559 2_4:+60876306 Msa0339620:CDS
AAGTTTGAAGGATGAGTTCG+GGG 0.648246 2_4:+60876241 Msa0339620:CDS
GACAGCAAGCAAATATGATG+AGG 0.653895 2_4:+60873717 Msa0339620:CDS
AGAGAAAATAAACGTGACCT+GGG 0.656489 2_4:-60872051 None:intergenic
AGTTTCTGGAAAAGAAGCTG+AGG 0.656933 2_4:+60873621 Msa0339620:CDS
GAATCAACGGCGAATACCAG+AGG 0.663429 2_4:-60872335 None:intergenic
GAATCATAAGAAAATTAAGG+AGG 0.665895 2_4:+60873312 Msa0339620:CDS
CATTAGAAATCAGCAAGATG+CGG 0.680318 2_4:+60874008 Msa0339620:intron
TAGTGAAGAAGTACCCACCC+AGG 0.687341 2_4:+60872034 None:intergenic
GGCGGGAACTGGAAGCTCGG+AGG 0.688311 2_4:+60874083 Msa0339620:CDS
CGATTAGAGTTACAACGCTG+TGG 0.699428 2_4:+60873359 Msa0339620:CDS
ACAACGCTGTGGAACCCTAG+AGG 0.703885 2_4:+60873370 Msa0339620:CDS
AGGATCATGAAATAGCTAGG+CGG 0.734039 2_4:+60874065 Msa0339620:CDS
GGAAACACCCTCCTTCAACG+AGG 0.744953 2_4:-60876372 None:intergenic
TTAAACGAGTACAACCCTAG+TGG 0.763773 2_4:+60876302 Msa0339620:CDS
AGCTTTCAGGCAGAGCACTG+TGG 0.768741 2_4:+60873466 Msa0339620:CDS
AAGATGAAGAGATTTGAACG+CGG 0.778312 2_4:-60872357 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAATTTTTGATATTTCA+TGG + chr2_4:60873960-60873979 Msa0339620:intron 10.0%
!! TAAGTTATTAAAAAATAAGA+TGG - chr2_4:60874448-60874467 None:intergenic 10.0%
!!! TATTTTTTAATAACTTATGA+CGG + chr2_4:60874451-60874470 Msa0339620:intron 10.0%
!! TATAATTTAAAGGATATAGT+TGG + chr2_4:60873565-60873584 Msa0339620:CDS 15.0%
!! TATTAATATATCTATCTTCT+CGG + chr2_4:60873883-60873902 Msa0339620:intron 15.0%
!!! AAGAAAAATGTAATGTATTT+TGG + chr2_4:60874187-60874206 Msa0339620:intron 15.0%
!!! TAAATTTGCTTCTTTAAAAA+TGG + chr2_4:60874344-60874363 Msa0339620:intron 15.0%
!! TATTAAAAAATAAGATGGAT+TGG - chr2_4:60874443-60874462 None:intergenic 15.0%
!! AATTAAAAACTGTAGATAAA+AGG - chr2_4:60874594-60874613 None:intergenic 15.0%
!!! ATGTTAATATTAATGTCTTT+TGG + chr2_4:60874990-60875009 Msa0339620:intron 15.0%
!! AACTTTAACAATATTAATTC+TGG - chr2_4:60875992-60876011 None:intergenic 15.0%
!! AATAATTACTAATATCATGT+AGG + chr2_4:60876580-60876599 Msa0339620:three_prime_UTR 15.0%
!!! AAAAGAAAATTTTCTGGTTT+TGG - chr2_4:60872223-60872242 None:intergenic 20.0%
!! AATAGAAGTTATGGTAAAAA+GGG - chr2_4:60872476-60872495 None:intergenic 20.0%
!!! TTTTGATTGAATAGAAGTTA+TGG - chr2_4:60872485-60872504 None:intergenic 20.0%
!!! CTTTGAAAATGTATATTGAA+AGG + chr2_4:60873029-60873048 Msa0339620:CDS 20.0%
!!! ATGTTAAAGTTGATAGAATT+AGG + chr2_4:60873059-60873078 Msa0339620:CDS 20.0%
!! GAAGAATCATAAGAAAATTA+AGG + chr2_4:60873309-60873328 Msa0339620:CDS 20.0%
!! TCATGATGACTATAATTTAA+AGG + chr2_4:60873555-60873574 Msa0339620:CDS 20.0%
!! TAATAAAAACCAGAATGTTT+CGG - chr2_4:60873868-60873887 None:intergenic 20.0%
!!! ATACACTTATCAATTTTTTG+CGG - chr2_4:60874936-60874955 None:intergenic 20.0%
!!! TCTTTGTAAAAGATTAGTTA+TGG - chr2_4:60875062-60875081 None:intergenic 20.0%
!!! TGAATTAAAATCATCACTTT+TGG - chr2_4:60875471-60875490 None:intergenic 20.0%
!!! TCACATTTTAGTTGAAAATT+TGG + chr2_4:60875498-60875517 Msa0339620:intron 20.0%
!! TTCATAATAATTACAAAGCA+TGG + chr2_4:60876056-60876075 Msa0339620:intron 20.0%
!! TCATAATAATTACAAAGCAT+GGG + chr2_4:60876057-60876076 Msa0339620:intron 20.0%
!! ATGTAACATATATTAGATCA+CGG - chr2_4:60876178-60876197 None:intergenic 20.0%
!! ATACGTTGAAAAATTATCAA+AGG + chr2_4:60876663-60876682 Msa0339620:three_prime_UTR 20.0%
!! GATAATAGGGTTTTTGAATT+TGG - chr2_4:60872128-60872147 None:intergenic 25.0%
! TAGAAAAGAGAGAGATAATA+GGG - chr2_4:60872141-60872160 None:intergenic 25.0%
! TTAGAAAAGAGAGAGATAAT+AGG - chr2_4:60872142-60872161 None:intergenic 25.0%
!! TGTGTGAAAAGAAAATTTTC+TGG - chr2_4:60872229-60872248 None:intergenic 25.0%
! ATTTCCAGAAAATTTCCTTA+GGG + chr2_4:60872270-60872289 Msa0339620:five_prime_UTR 25.0%
! ATAGAAGTTATGGTAAAAAG+GGG - chr2_4:60872475-60872494 None:intergenic 25.0%
! GAATAGAAGTTATGGTAAAA+AGG - chr2_4:60872477-60872496 None:intergenic 25.0%
!! AGTTTTTACTGTATTTTCCA+TGG + chr2_4:60872692-60872711 Msa0339620:intron 25.0%
!!! ATGAGTATGTTTTGATCTTT+TGG - chr2_4:60872801-60872820 None:intergenic 25.0%
! ATCAAAACATACTCATGATT+CGG + chr2_4:60872805-60872824 Msa0339620:CDS 25.0%
! GAATCATAAGAAAATTAAGG+AGG + chr2_4:60873312-60873331 Msa0339620:CDS 25.0%
!! AGTGCTGTTCTAATTAATAT+TGG + chr2_4:60873819-60873838 Msa0339620:intron 25.0%
! AATATTGGTATTCTGTTTCA+TGG + chr2_4:60873834-60873853 Msa0339620:intron 25.0%
! TGATGAAAAAATGATGTCTT+TGG + chr2_4:60874538-60874557 Msa0339620:CDS 25.0%
!!! TTCAGTTTTGAGAACTTTTT+CGG + chr2_4:60874631-60874650 Msa0339620:intron 25.0%
!!! TACACTTATCAATTTTTTGC+GGG - chr2_4:60874935-60874954 None:intergenic 25.0%
!! AGTTATGGAAGACATTTTAA+AGG - chr2_4:60875047-60875066 None:intergenic 25.0%
!! ATTTCTGCTTAAGTTTTACA+AGG - chr2_4:60875093-60875112 None:intergenic 25.0%
!! GAAATCTTATTTATCTTGCT+TGG + chr2_4:60875207-60875226 Msa0339620:intron 25.0%
!!! AAACACCGTATATTTTGAAT+TGG - chr2_4:60875273-60875292 None:intergenic 25.0%
! GTTGAAAAATTGTAATTCCT+TGG - chr2_4:60875314-60875333 None:intergenic 25.0%
!!! ACTTATTTTGCTTGAAGTTT+GGG - chr2_4:60875620-60875639 None:intergenic 25.0%
!!! AACTTATTTTGCTTGAAGTT+TGG - chr2_4:60875621-60875640 None:intergenic 25.0%
! ATAATTTCTGTGAAAAGGAT+GGG + chr2_4:60875753-60875772 Msa0339620:CDS 25.0%
! TGAAAAGCTAAAAAGTTTGA+AGG + chr2_4:60876229-60876248 Msa0339620:CDS 25.0%
! TTTCCATTGCCTAATTAAAT+GGG - chr2_4:60876396-60876415 None:intergenic 25.0%
! ATTTCCATTGCCTAATTAAA+TGG - chr2_4:60876397-60876416 None:intergenic 25.0%
! ATAGAATTAGACTTAAATGC+AGG + chr2_4:60876466-60876485 Msa0339620:three_prime_UTR 25.0%
!! GGAAATTTGAAATTGTCTAT+TGG + chr2_4:60876634-60876653 Msa0339620:three_prime_UTR 25.0%
GACACTAGAAAATGATGAAA+CGG - chr2_4:60872183-60872202 None:intergenic 30.0%
!! CTAAGGAAATTTTCTGGAAA+TGG - chr2_4:60872271-60872290 None:intergenic 30.0%
CATTTCCAGAAAATTTCCTT+AGG + chr2_4:60872269-60872288 Msa0339620:five_prime_UTR 30.0%
CGATTAACCAGTAGAAATTA+TGG - chr2_4:60872418-60872437 None:intergenic 30.0%
TACATTCAGTGATTAAATCG+AGG - chr2_4:60872564-60872583 None:intergenic 30.0%
CAGTAACTGAAAATAAACCA+TGG - chr2_4:60872712-60872731 None:intergenic 30.0%
TAGATATTACGAAGACTTGA+AGG + chr2_4:60872847-60872866 Msa0339620:CDS 30.0%
! TAATCCTTGTTGTAGCAAAA+CGG - chr2_4:60872923-60872942 None:intergenic 30.0%
! GTTGATAGAATTAGGTTATC+TGG + chr2_4:60873067-60873086 Msa0339620:CDS 30.0%
TGATAGAATTGCTAGTGATA+AGG + chr2_4:60873090-60873109 Msa0339620:CDS 30.0%
ACGTATTATGAATGTCGATA+AGG + chr2_4:60873174-60873193 Msa0339620:CDS 30.0%
CGTATTATGAATGTCGATAA+GGG + chr2_4:60873175-60873194 Msa0339620:CDS 30.0%
! CTCTTTTCCAAATTCAACAA+TGG - chr2_4:60873410-60873429 None:intergenic 30.0%
TTGTTGAATTTGGAAAAGAG+TGG + chr2_4:60873410-60873429 Msa0339620:CDS 30.0%
TGTTGAATTTGGAAAAGAGT+GGG + chr2_4:60873411-60873430 Msa0339620:CDS 30.0%
! CTTATCATTCTGTTGCATTT+TGG + chr2_4:60873911-60873930 Msa0339620:intron 30.0%
!!! ATTTTGGCTCTGTGAATTTA+TGG + chr2_4:60874203-60874222 Msa0339620:intron 30.0%
!!! TTGAACACACTTTTTCTGAT+AGG + chr2_4:60874266-60874285 Msa0339620:intron 30.0%
!! CTAACAACACTTTTTGTGAT+TGG - chr2_4:60874371-60874390 None:intergenic 30.0%
ATTTGACACAAAAGACCAAA+TGG - chr2_4:60874412-60874431 None:intergenic 30.0%
!! TTGTTGTTTACAGAATGAGA+TGG + chr2_4:60874493-60874512 Msa0339620:intron 30.0%
TTGAATGTTGCAGAAAGAAA+AGG + chr2_4:60874654-60874673 Msa0339620:intron 30.0%
TCTAGAAGAGAAGAAAAAAC+TGG + chr2_4:60874798-60874817 Msa0339620:CDS 30.0%
AAAACTGGAGGAAATCAAAA+TGG + chr2_4:60874813-60874832 Msa0339620:CDS 30.0%
GATTTGAATGTTTGCAAAAC+AGG - chr2_4:60875179-60875198 None:intergenic 30.0%
TATTTATCTTGCTTGGAAGA+CGG + chr2_4:60875214-60875233 Msa0339620:intron 30.0%
TTGTTCACGTGAATTTACAA+CGG + chr2_4:60875247-60875266 Msa0339620:intron 30.0%
AACGGCCAATTCAAAATATA+CGG + chr2_4:60875265-60875284 Msa0339620:intron 30.0%
AACCTTAGTTTCTATATCCA+AGG + chr2_4:60875294-60875313 Msa0339620:intron 30.0%
TTCCTTGGATATAGAAACTA+AGG - chr2_4:60875299-60875318 None:intergenic 30.0%
GATTCACATAATAGGATGAT+AGG - chr2_4:60875336-60875355 None:intergenic 30.0%
ATCCTATTATGTGAATCATG+TGG + chr2_4:60875339-60875358 Msa0339620:intron 30.0%
AACCACATGATTCACATAAT+AGG - chr2_4:60875344-60875363 None:intergenic 30.0%
TGAATTAAAACCATCACCTT+TGG - chr2_4:60875407-60875426 None:intergenic 30.0%
TTTGTCATATTGCTTCATAC+TGG + chr2_4:60875572-60875591 Msa0339620:intron 30.0%
ACTTCAAGCAAAATAAGTTC+AGG + chr2_4:60875622-60875641 Msa0339620:intron 30.0%
CAAACCAAACAATGAAATCA+TGG - chr2_4:60875672-60875691 None:intergenic 30.0%
! CATCCTTTTCACAGAAATTA+TGG - chr2_4:60875754-60875773 None:intergenic 30.0%
CATAATTTCTGTGAAAAGGA+TGG + chr2_4:60875752-60875771 Msa0339620:CDS 30.0%
!! ACTTGAGATTAAGCCATTTT+TGG + chr2_4:60875779-60875798 Msa0339620:CDS 30.0%
TTCATCAGAAAACTTTCTCT+TGG - chr2_4:60875811-60875830 None:intergenic 30.0%
TTATCAGTCTCAACTTTGAA+CGG - chr2_4:60875942-60875961 None:intergenic 30.0%
AAAGTTGAGACTGATAAAGA+CGG + chr2_4:60875945-60875964 Msa0339620:CDS 30.0%
ATATGTTACATATATCACGC+AGG + chr2_4:60876187-60876206 Msa0339620:intron 30.0%
AAAAGTTTGAAGGATGAGTT+CGG + chr2_4:60876239-60876258 Msa0339620:CDS 30.0%
TTTCCCATTTAATTAGGCAA+TGG + chr2_4:60876390-60876409 Msa0339620:CDS 30.0%
TAGGCAATGGAAATCAAATA+AGG + chr2_4:60876403-60876422 Msa0339620:CDS 30.0%
AGGCAATGGAAATCAAATAA+GGG + chr2_4:60876404-60876423 Msa0339620:CDS 30.0%
AAGGGAAAGAAAACTTATTG+AGG + chr2_4:60876422-60876441 Msa0339620:CDS 30.0%
AAACTTATTGAGGCTTCATT+TGG + chr2_4:60876432-60876451 Msa0339620:exon 30.0%
AACTTATTGAGGCTTCATTT+GGG + chr2_4:60876433-60876452 Msa0339620:exon 30.0%
!!! ATATCATGTAGGAGTACTTT+TGG + chr2_4:60876591-60876610 Msa0339620:three_prime_UTR 30.0%
!!! TATCATGTAGGAGTACTTTT+GGG + chr2_4:60876592-60876611 Msa0339620:three_prime_UTR 30.0%
AGAGAAAATAAACGTGACCT+GGG - chr2_4:60872054-60872073 None:intergenic 35.0%
!!! GGATTTGTTGTTGAGTTTTC+AGG - chr2_4:60872101-60872120 None:intergenic 35.0%
!! AGGGTTTTTGAATTTGGTGA+AGG - chr2_4:60872122-60872141 None:intergenic 35.0%
! GAAACCCTAAGGAAATTTTC+TGG - chr2_4:60872277-60872296 None:intergenic 35.0%
ATGAAGAATACGAAACCCTA+AGG - chr2_4:60872288-60872307 None:intergenic 35.0%
AAGATGAAGAGATTTGAACG+CGG - chr2_4:60872360-60872379 None:intergenic 35.0%
!! AATTATGGTGTTACCTTGTG+CGG - chr2_4:60872403-60872422 None:intergenic 35.0%
GGTAACACCATAATTTCTAC+TGG + chr2_4:60872408-60872427 Msa0339620:intron 35.0%
TGTTTGTGTAGCTCTTTCTT+TGG + chr2_4:60872744-60872763 Msa0339620:intron 35.0%
CTTGAAGGATGATTACTACA+AGG + chr2_4:60872862-60872881 Msa0339620:CDS 35.0%
! AGACATGCTTCCAGAATTTT+GGG + chr2_4:60872965-60872984 Msa0339620:CDS 35.0%
!! TTGATGATGAGTTGTTTGTC+TGG + chr2_4:60873221-60873240 Msa0339620:CDS 35.0%
!! ACTAATTTTGACCCGAAAAG+CGG + chr2_4:60873274-60873293 Msa0339620:CDS 35.0%
CCAAATTCAACAATGGCAAA+GGG - chr2_4:60873403-60873422 None:intergenic 35.0%
TCCAAATTCAACAATGGCAA+AGG - chr2_4:60873404-60873423 None:intergenic 35.0%
ACAATGCTATGAAGTTAGAG+AGG + chr2_4:60873443-60873462 Msa0339620:CDS 35.0%
AGAGGGATTACTTAGGTTTA+AGG + chr2_4:60873491-60873510 Msa0339620:CDS 35.0%
GAGGGATTACTTAGGTTTAA+GGG + chr2_4:60873492-60873511 Msa0339620:CDS 35.0%
! TCAAATCCACATTTTCCTTC+AGG - chr2_4:60873597-60873616 None:intergenic 35.0%
GTGGATTTGAAAACAGTTTC+TGG + chr2_4:60873607-60873626 Msa0339620:CDS 35.0%
!! AGTCTTCTGCTTTAAGGTAT+TGG - chr2_4:60873683-60873702 None:intergenic 35.0%
TTCATCAGTCTTCTGCTTTA+AGG - chr2_4:60873689-60873708 None:intergenic 35.0%
AAAGCAGAAGACTGATGAAT+TGG + chr2_4:60873690-60873709 Msa0339620:CDS 35.0%
TTTGATCCATCACTTTCCTT+AGG - chr2_4:60873753-60873772 None:intergenic 35.0%
! ATGCTTGAAGCTTTTAACGA+GGG + chr2_4:60873781-60873800 Msa0339620:CDS 35.0%
CATTAGAAATCAGCAAGATG+CGG + chr2_4:60874008-60874027 Msa0339620:intron 35.0%
! GAAAAAGTGTGTTCAAGAGA+GGG - chr2_4:60874262-60874281 None:intergenic 35.0%
! AGAAAAAGTGTGTTCAAGAG+AGG - chr2_4:60874263-60874282 None:intergenic 35.0%
TGTTAGCATTCCTTACTCTA+TGG + chr2_4:60874385-60874404 Msa0339620:intron 35.0%
TCACAAGAAAATTCATGACC+TGG + chr2_4:60874684-60874703 Msa0339620:CDS 35.0%
ACTTGATGCAAAACAAGCAT+TGG + chr2_4:60874714-60874733 Msa0339620:CDS 35.0%
!! TGCAAAACAAGCATTGGAAT+TGG + chr2_4:60874720-60874739 Msa0339620:CDS 35.0%
CATTGGAATTGGAGATAGAA+CGG + chr2_4:60874731-60874750 Msa0339620:CDS 35.0%
TTCCAGGTAATGAATCACAT+TGG + chr2_4:60874766-60874785 Msa0339620:CDS 35.0%
AGAAGAGAAGAAAAAACTGG+AGG + chr2_4:60874801-60874820 Msa0339620:CDS 35.0%
TTGGCTATCAACTCATCTAA+TGG + chr2_4:60875009-60875028 Msa0339620:intron 35.0%
GTTGAAAATTTGGTAGAGTC+AGG + chr2_4:60875508-60875527 Msa0339620:intron 35.0%
CGAACAAGGAAAAGAATTAC+TGG - chr2_4:60875697-60875716 None:intergenic 35.0%
GAGCCATAATTTCTGTGAAA+AGG + chr2_4:60875748-60875767 Msa0339620:CDS 35.0%
AAGTTGAGACTGATAAAGAC+GGG + chr2_4:60875946-60875965 Msa0339620:CDS 35.0%
!! ATTCTGGAGTTATTGTACCA+TGG - chr2_4:60875976-60875995 None:intergenic 35.0%
! ATCACGCAGGAAATTTTAGA+CGG + chr2_4:60876200-60876219 Msa0339620:intron 35.0%
AAAGTTTGAAGGATGAGTTC+GGG + chr2_4:60876240-60876259 Msa0339620:CDS 35.0%
! AGGGTGTTTCCCATTTAATT+AGG + chr2_4:60876384-60876403 Msa0339620:CDS 35.0%
! ATTCTAGCTGTAACTGACTT+TGG + chr2_4:60876502-60876521 Msa0339620:three_prime_UTR 35.0%
! GAAGTATTAACACCAACCAT+TGG - chr2_4:60876546-60876565 None:intergenic 35.0%
AAAATAAACGTGACCTGGGT+GGG - chr2_4:60872050-60872069 None:intergenic 40.0%
CAGAGAAAATAAACGTGACC+TGG - chr2_4:60872055-60872074 None:intergenic 40.0%
!!! TTCTCTCGTTTTTTCTCCTC+TGG + chr2_4:60872319-60872338 Msa0339620:five_prime_UTR 40.0%
AGATTTGAACGCGGAATCAA+CGG - chr2_4:60872351-60872370 None:intergenic 40.0%
!! ATTATGGTGTTACCTTGTGC+GGG - chr2_4:60872402-60872421 None:intergenic 40.0%
AGCTCAAAATCTCTGATTCC+AGG + chr2_4:60872888-60872907 Msa0339620:CDS 40.0%
! GAGACATGCTTCCAGAATTT+TGG + chr2_4:60872964-60872983 Msa0339620:CDS 40.0%
! ATTGCTAGTGATAAGGTACC+TGG + chr2_4:60873097-60873116 Msa0339620:CDS 40.0%
TCACTAGCATTACTAACACC+AGG - chr2_4:60873118-60873137 None:intergenic 40.0%
TTAGCCAATATGACCATCCA+TGG - chr2_4:60873247-60873266 None:intergenic 40.0%
!! CAACATACTTTCCGCTTTTC+GGG - chr2_4:60873288-60873307 None:intergenic 40.0%
!! CCAACATACTTTCCGCTTTT+CGG - chr2_4:60873289-60873308 None:intergenic 40.0%
! CGAAAAGCGGAAAGTATGTT+GGG + chr2_4:60873287-60873306 Msa0339620:CDS 40.0%
CACAGCGTTGTAACTCTAAT+CGG - chr2_4:60873361-60873380 None:intergenic 40.0%
CCCTTTGCCATTGTTGAATT+TGG + chr2_4:60873400-60873419 Msa0339620:CDS 40.0%
GAATTTGGAAAAGAGTGGGA+TGG + chr2_4:60873415-60873434 Msa0339620:CDS 40.0%
TGTGGTAAGAGGGATTACTT+AGG + chr2_4:60873484-60873503 Msa0339620:CDS 40.0%
TTACTTAGGTTTAAGGGAGC+AGG + chr2_4:60873498-60873517 Msa0339620:CDS 40.0%
AGATAGACTATTTGGCTGGA+TGG + chr2_4:60873528-60873547 Msa0339620:CDS 40.0%
TATAGTTGGCAAACACCTGA+AGG + chr2_4:60873579-60873598 Msa0339620:CDS 40.0%
CAAACACCTGAAGGAAAATG+TGG + chr2_4:60873588-60873607 Msa0339620:CDS 40.0%
! AGTTTCTGGAAAAGAAGCTG+AGG + chr2_4:60873621-60873640 Msa0339620:CDS 40.0%
GACAGCAAGCAAATATGATG+AGG + chr2_4:60873717-60873736 Msa0339620:CDS 40.0%
ATGAGGCTAATGCATTCCTA+AGG + chr2_4:60873734-60873753 Msa0339620:CDS 40.0%
TGCATTCCTAAGGAAAGTGA+TGG + chr2_4:60873744-60873763 Msa0339620:CDS 40.0%
! GATGCTTGAAGCTTTTAACG+AGG + chr2_4:60873780-60873799 Msa0339620:CDS 40.0%
! GATTTAGAGCCGAAACATTC+TGG + chr2_4:60873856-60873875 Msa0339620:intron 40.0%
!! CGCATCTTGCTGATTTCTAA+TGG - chr2_4:60874010-60874029 None:intergenic 40.0%
!! GTATCAGGAGAAAGTATCGA+AGG + chr2_4:60874045-60874064 Msa0339620:CDS 40.0%
CGAAGGATCATGAAATAGCT+AGG + chr2_4:60874062-60874081 Msa0339620:CDS 40.0%
AGGATCATGAAATAGCTAGG+CGG + chr2_4:60874065-60874084 Msa0339620:CDS 40.0%
GTGTTCAAGAGAGGGTTAAA+AGG - chr2_4:60874254-60874273 None:intergenic 40.0%
TCCTTACTCTATGGACCATT+TGG + chr2_4:60874394-60874413 Msa0339620:intron 40.0%
ACCAAATGGTCCATAGAGTA+AGG - chr2_4:60874398-60874417 None:intergenic 40.0%
GGCAATAGAAGAGCAACAAA+AGG + chr2_4:60874514-60874533 Msa0339620:CDS 40.0%
GTCTTTGGCTGAAGAACATA+AGG + chr2_4:60874553-60874572 Msa0339620:CDS 40.0%
AAAATTCATGACCTGGAGAG+AGG + chr2_4:60874691-60874710 Msa0339620:CDS 40.0%
CTCCAATGTGATTCATTACC+TGG - chr2_4:60874771-60874790 None:intergenic 40.0%
GAAAAAGAAGAGGAGTTGGA+AGG + chr2_4:60874844-60874863 Msa0339620:CDS 40.0%
! CACTTTTGGACACAAACAAC+TGG - chr2_4:60875457-60875476 None:intergenic 40.0%
! ATTCTTTTCCTTGTTCGCAG+TGG + chr2_4:60875700-60875719 Msa0339620:intron 40.0%
TTCACAGAAATTATGGCTCG+AGG - chr2_4:60875747-60875766 None:intergenic 40.0%
AAGCACAACTTCGCGAAAAA+TGG + chr2_4:60875853-60875872 Msa0339620:CDS 40.0%
TGATAAAGACGGGAAATCCA+TGG + chr2_4:60875956-60875975 Msa0339620:CDS 40.0%
TACAAAGCATGGGATGCTAT+TGG + chr2_4:60876067-60876086 Msa0339620:intron 40.0%
TTTCCCTGATATGAACTGCA+TGG + chr2_4:60876151-60876170 Msa0339620:intron 40.0%
AAGTTTGAAGGATGAGTTCG+GGG + chr2_4:60876241-60876260 Msa0339620:CDS 40.0%
TTAAACGAGTACAACCCTAG+TGG + chr2_4:60876302-60876321 Msa0339620:CDS 40.0%
!!! TACCGGAACTCTGGAATTTT+AGG + chr2_4:60876336-60876355 Msa0339620:CDS 40.0%
!!! ACCGGAACTCTGGAATTTTA+GGG + chr2_4:60876337-60876356 Msa0339620:CDS 40.0%
TCCCTAAAATTCCAGAGTTC+CGG - chr2_4:60876341-60876360 None:intergenic 40.0%
!!! GAACTCTGGAATTTTAGGGA+AGG + chr2_4:60876341-60876360 Msa0339620:CDS 40.0%
!! TCTGGAATTTTAGGGAAGGA+AGG + chr2_4:60876345-60876364 Msa0339620:CDS 40.0%
TTATTGAGGCTTCATTTGGG+TGG + chr2_4:60876436-60876455 Msa0339620:exon 40.0%
CAATCCAATCACAATGCCAA+TGG + chr2_4:60876527-60876546 Msa0339620:three_prime_UTR 40.0%
GGTTCAAACTTAGAAACGAG+TGG + chr2_4:60876613-60876632 Msa0339620:three_prime_UTR 40.0%
GAAAATAAACGTGACCTGGG+TGG - chr2_4:60872051-60872070 None:intergenic 45.0%
TTGAGTAATCTTCCCGCACA+AGG + chr2_4:60872387-60872406 Msa0339620:five_prime_UTR 45.0%
! CTGTCCGTTTTGCTACAACA+AGG + chr2_4:60872916-60872935 Msa0339620:CDS 45.0%
ATGAGTTGTTTGTCTGGCCA+TGG + chr2_4:60873227-60873246 Msa0339620:CDS 45.0%
! CCGAAAAGCGGAAAGTATGT+TGG + chr2_4:60873286-60873305 Msa0339620:CDS 45.0%
AAGGAGGAGCTGAACATGAA+AGG + chr2_4:60873328-60873347 Msa0339620:CDS 45.0%
AGGAGGAGCTGAACATGAAA+GGG + chr2_4:60873329-60873348 Msa0339620:CDS 45.0%
CGATTAGAGTTACAACGCTG+TGG + chr2_4:60873359-60873378 Msa0339620:CDS 45.0%
!! CAAAGGGTGTTTGTCCTCTA+GGG - chr2_4:60873387-60873406 None:intergenic 45.0%
GAAGTTAGAGAGGAGCTTTC+AGG + chr2_4:60873453-60873472 Msa0339620:CDS 45.0%
GAGCGAGGAGATAGACTATT+TGG + chr2_4:60873520-60873539 Msa0339620:CDS 45.0%
GAGGAGATAGACTATTTGGC+TGG + chr2_4:60873524-60873543 Msa0339620:CDS 45.0%
GAAAAGAAGCTGAGGACACA+AGG + chr2_4:60873629-60873648 Msa0339620:CDS 45.0%
AAAGCGAAGACGCTTGTCTT+TGG + chr2_4:60873652-60873671 Msa0339620:CDS 45.0%
GAAGACGCTTGTCTTTGGTT+TGG + chr2_4:60873657-60873676 Msa0339620:CDS 45.0%
GGATCATGAAATAGCTAGGC+GGG + chr2_4:60874066-60874085 Msa0339620:CDS 45.0%
TGAACTCAAGTCCCGTGAAA+AGG + chr2_4:60874108-60874127 Msa0339620:CDS 45.0%
! CTTCTGCAGATCCTTTTCAC+GGG - chr2_4:60874122-60874141 None:intergenic 45.0%
! GCTTCTGCAGATCCTTTTCA+CGG - chr2_4:60874123-60874142 None:intergenic 45.0%
TTGGAGATAGAACGGCTGAA+AGG + chr2_4:60874739-60874758 Msa0339620:CDS 45.0%
GGAAATCAAAATGGAGCTGC+AGG + chr2_4:60874822-60874841 Msa0339620:CDS 45.0%
GCAGGAAAAAGAAGAGGAGT+TGG + chr2_4:60874840-60874859 Msa0339620:CDS 45.0%
GGAAGATCTTCAACAGACAC+TGG + chr2_4:60874870-60874889 Msa0339620:CDS 45.0%
TCACCTTTGGACACAGACAA+CGG - chr2_4:60875394-60875413 None:intergenic 45.0%
TTGTCTGTGTCCAAAGGTGA+TGG + chr2_4:60875394-60875413 Msa0339620:intron 45.0%
!! AGTTTGTTGCTGTTGCCTTG+CGG + chr2_4:60875646-60875665 Msa0339620:intron 45.0%
ACAATGAAATCATGGCCGCA+AGG - chr2_4:60875664-60875683 None:intergenic 45.0%
GCGGCCATGATTTCATTGTT+TGG + chr2_4:60875665-60875684 Msa0339620:intron 45.0%
TTTCCTTGTTCGCAGTGGAT+TGG + chr2_4:60875705-60875724 Msa0339620:intron 45.0%
CTCTTGGCTGCTTCCAAAAA+TGG - chr2_4:60875795-60875814 None:intergenic 45.0%
GGCAATTGAAAGCAATCGAG+TGG + chr2_4:60875874-60875893 Msa0339620:CDS 45.0%
AATCGAGTGGTGCTCAAAGT+GGG + chr2_4:60875887-60875906 Msa0339620:CDS 45.0%
ACTGTCTTAAAGATCCCAGC+TGG + chr2_4:60875913-60875932 Msa0339620:CDS 45.0%
TGCCAAATAAGTGCTAGCAG+CGG - chr2_4:60876125-60876144 None:intergenic 45.0%
GGTCCATGCAGTTCATATCA+GGG - chr2_4:60876157-60876176 None:intergenic 45.0%
AATTCCAGAGTTCCGGTACT+GGG - chr2_4:60876334-60876353 None:intergenic 45.0%
AAATTCCAGAGTTCCGGTAC+TGG - chr2_4:60876335-60876354 None:intergenic 45.0%
CCAACCATTGGCATTGTGAT+TGG - chr2_4:60876534-60876553 None:intergenic 45.0%
CCAATCACAATGCCAATGGT+TGG + chr2_4:60876531-60876550 Msa0339620:three_prime_UTR 45.0%
GAATCAACGGCGAATACCAG+AGG - chr2_4:60872338-60872357 None:intergenic 50.0%
ACGCGAGTCACCCAAAATTC+TGG - chr2_4:60872978-60872997 None:intergenic 50.0%
GTTGTTTGTCTGGCCATGGA+TGG + chr2_4:60873231-60873250 Msa0339620:CDS 50.0%
CTGGCCATGGATGGTCATAT+TGG + chr2_4:60873240-60873259 Msa0339620:CDS 50.0%
!! GCAAAGGGTGTTTGTCCTCT+AGG - chr2_4:60873388-60873407 None:intergenic 50.0%
AGAAATCAGCAAGATGCGGC+AGG + chr2_4:60874012-60874031 Msa0339620:intron 50.0%
TGAAATAGCTAGGCGGGAAC+TGG + chr2_4:60874072-60874091 Msa0339620:CDS 50.0%
TTGCATCAAGTCCTCTCTCC+AGG - chr2_4:60874705-60874724 None:intergenic 50.0%
GGAGCTGCAGGAAAAAGAAG+AGG + chr2_4:60874834-60874853 Msa0339620:CDS 50.0%
ATCCCGTTGTCTGTGTCCAA+AGG + chr2_4:60875388-60875407 Msa0339620:intron 50.0%
CACCTTTGGACACAGACAAC+GGG - chr2_4:60875393-60875412 None:intergenic 50.0%
CATCCAATCCACTGCGAACA+AGG - chr2_4:60875711-60875730 None:intergenic 50.0%
!! GTGGATTGGATGCCCAAAGA+AGG + chr2_4:60875719-60875738 Msa0339620:intron 50.0%
CAATCGAGTGGTGCTCAAAG+TGG + chr2_4:60875886-60875905 Msa0339620:CDS 50.0%
ACTTTGAACGGATGCCAGCT+GGG - chr2_4:60875930-60875949 None:intergenic 50.0%
AACTTTGAACGGATGCCAGC+TGG - chr2_4:60875931-60875950 None:intergenic 50.0%
TGCCGCTGCTAGCACTTATT+TGG + chr2_4:60876120-60876139 Msa0339620:intron 50.0%
CGGTCCATGCAGTTCATATC+AGG - chr2_4:60876158-60876177 None:intergenic 50.0%
! TGCAGTAGCTACAGCTCTGA+AGG + chr2_4:60876277-60876296 Msa0339620:CDS 50.0%
ACGAGTACAACCCTAGTGGT+AGG + chr2_4:60876306-60876325 Msa0339620:CDS 50.0%
GTACTGGGTACCTACCACTA+GGG - chr2_4:60876319-60876338 None:intergenic 50.0%
TAGTGGTAGGTACCCAGTAC+CGG + chr2_4:60876319-60876338 Msa0339620:CDS 50.0%
AGGAAGGAAAGCCTCGTTGA+AGG + chr2_4:60876361-60876380 Msa0339620:CDS 50.0%
AAGGAAAGCCTCGTTGAAGG+AGG + chr2_4:60876364-60876383 Msa0339620:CDS 50.0%
AGGAAAGCCTCGTTGAAGGA+GGG + chr2_4:60876365-60876384 Msa0339620:CDS 50.0%
GCAAAACGGACAGCGATACC+TGG - chr2_4:60872909-60872928 None:intergenic 55.0%
TTTGGGTGACTCGCGTGAGA+CGG + chr2_4:60872982-60873001 Msa0339620:CDS 55.0%
ACAACGCTGTGGAACCCTAG+AGG + chr2_4:60873370-60873389 Msa0339620:CDS 55.0%
!! AGCTTTCAGGCAGAGCACTG+TGG + chr2_4:60873466-60873485 Msa0339620:CDS 55.0%
!! AGGCAGAGCACTGTGGTAAG+AGG + chr2_4:60873473-60873492 Msa0339620:CDS 55.0%
!! GGCAGAGCACTGTGGTAAGA+GGG + chr2_4:60873474-60873493 Msa0339620:CDS 55.0%
! GCAGGTTGAACGCGAGTATC+AGG + chr2_4:60874030-60874049 Msa0339620:CDS 55.0%
ACGGCTGAAAGGAGCTTTCC+AGG + chr2_4:60874750-60874769 Msa0339620:CDS 55.0%
AGAAGAGGAGTTGGAAGGCG+TGG + chr2_4:60874849-60874868 Msa0339620:CDS 55.0%
TGGCTCGAGGAGCCTTCTTT+GGG - chr2_4:60875734-60875753 None:intergenic 55.0%
ATGGCTCGAGGAGCCTTCTT+TGG - chr2_4:60875735-60875754 None:intergenic 55.0%
TGCTAGCAGCGGCAAGTTTC+AGG - chr2_4:60876114-60876133 None:intergenic 55.0%
GAAGGATGAGTTCGGGGATG+AGG + chr2_4:60876247-60876266 Msa0339620:CDS 55.0%
! GGTACTGGGTACCTACCACT+AGG - chr2_4:60876320-60876339 None:intergenic 55.0%
GGAAACACCCTCCTTCAACG+AGG - chr2_4:60876375-60876394 None:intergenic 55.0%
GGTTTAAGGGAGCAGGAGCG+AGG + chr2_4:60873505-60873524 Msa0339620:CDS 60.0%
CTAGGCGGGAACTGGAAGCT+CGG + chr2_4:60874080-60874099 Msa0339620:CDS 60.0%
! GGTACCCAGTACCGGAACTC+TGG + chr2_4:60876327-60876346 Msa0339620:CDS 60.0%
GGCGGGAACTGGAAGCTCGG+AGG + chr2_4:60874083-60874102 Msa0339620:CDS 70.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 60872037 60876686 60872037 ID=Msa0339620;Name=Msa0339620
chr2_4 mRNA 60872037 60876686 60872037 ID=Msa0339620-mRNA-1;Parent=Msa0339620;Name=Msa0339620-mRNA-1;_AED=0.26;_eAED=0.26;_QI=372|1|1|1|0.83|0.85|7|244|678
chr2_4 exon 60872037 60872408 60872037 ID=Msa0339620-mRNA-1:exon:18970;Parent=Msa0339620-mRNA-1
chr2_4 exon 60872794 60873802 60872794 ID=Msa0339620-mRNA-1:exon:18971;Parent=Msa0339620-mRNA-1
chr2_4 exon 60874014 60874195 60874014 ID=Msa0339620-mRNA-1:exon:18972;Parent=Msa0339620-mRNA-1
chr2_4 exon 60874506 60874574 60874506 ID=Msa0339620-mRNA-1:exon:18973;Parent=Msa0339620-mRNA-1
chr2_4 exon 60874667 60874951 60874667 ID=Msa0339620-mRNA-1:exon:18974;Parent=Msa0339620-mRNA-1
chr2_4 exon 60875720 60875977 60875720 ID=Msa0339620-mRNA-1:exon:18975;Parent=Msa0339620-mRNA-1
chr2_4 exon 60876209 60876686 60876209 ID=Msa0339620-mRNA-1:exon:18976;Parent=Msa0339620-mRNA-1
chr2_4 five_prime_UTR 60872037 60872408 60872037 ID=Msa0339620-mRNA-1:five_prime_utr;Parent=Msa0339620-mRNA-1
chr2_4 CDS 60872794 60873802 60872794 ID=Msa0339620-mRNA-1:cds;Parent=Msa0339620-mRNA-1
chr2_4 CDS 60874014 60874195 60874014 ID=Msa0339620-mRNA-1:cds;Parent=Msa0339620-mRNA-1
chr2_4 CDS 60874506 60874574 60874506 ID=Msa0339620-mRNA-1:cds;Parent=Msa0339620-mRNA-1
chr2_4 CDS 60874667 60874951 60874667 ID=Msa0339620-mRNA-1:cds;Parent=Msa0339620-mRNA-1
chr2_4 CDS 60875720 60875977 60875720 ID=Msa0339620-mRNA-1:cds;Parent=Msa0339620-mRNA-1
chr2_4 CDS 60876209 60876442 60876209 ID=Msa0339620-mRNA-1:cds;Parent=Msa0339620-mRNA-1
chr2_4 three_prime_UTR 60876443 60876686 60876443 ID=Msa0339620-mRNA-1:three_prime_utr;Parent=Msa0339620-mRNA-1
Gene Sequence

>Msa0339620

ATGTCCAAAAGATCAAAACATACTCATGATTCGGATTATGAATACTACGAGAGTAGATATTACGAAGACTTGAAGGATGATTACTACAAGGACAAGCTCAAAATCTCTGATTCCAGGTATCGCTGTCCGTTTTGCTACAACAAGGATTACTACTCTTTGAGCGAGTTATTGAGACATGCTTCCAGAATTTTGGGTGACTCGCGTGAGACGGATAAAGAAATTGCTAAACACTCTGCTTTGAAAATGTATATTGAAAGGTATCTAGATGTTAAAGTTGATAGAATTAGGTTATCTGGTGATAGAATTGCTAGTGATAAGGTACCTGGTGTTAGTAATGCTAGTGATAAGACTGTTAATTTGAGTATCGCTAATGAGAAGTCACGTATTATGAATGTCGATAAGGGTCAGTTAGCTAACAAGAACGTCGTTGATGATGAGTTGTTTGTCTGGCCATGGATGGTCATATTGGCTAACAATGTTACTAATTTTGACCCGAAAAGCGGAAAGTATGTTGGGAAGAATCATAAGAAAATTAAGGAGGAGCTGAACATGAAAGGGTTTCAGCCGATTAGAGTTACAACGCTGTGGAACCCTAGAGGACAAACACCCTTTGCCATTGTTGAATTTGGAAAAGAGTGGGATGGTTTTGACAATGCTATGAAGTTAGAGAGGAGCTTTCAGGCAGAGCACTGTGGTAAGAGGGATTACTTAGGTTTAAGGGAGCAGGAGCGAGGAGATAGACTATTTGGCTGGATGGCACGTCATGATGACTATAATTTAAAGGATATAGTTGGCAAACACCTGAAGGAAAATGTGGATTTGAAAACAGTTTCTGGAAAAGAAGCTGAGGACACAAGGAAAGCGAAGACGCTTGTCTTTGGTTTGGCCAATACCTTAAAGCAGAAGACTGATGAATTGGAACAGACAGCAAGCAAATATGATGAGGCTAATGCATTCCTAAGGAAAGTGATGGATCAAAAAGAGAAGATGCTTGAAGCTTTTAACGAGGAAATCAGCAAGATGCGGCAGGTTGAACGCGAGTATCAGGAGAAAGTATCGAAGGATCATGAAATAGCTAGGCGGGAACTGGAAGCTCGGAGGAATGAACTCAAGTCCCGTGAAAAGGATCTGCAGAAGCGTCAAGCAGATAATCTCAATGAGAGAAACAAGCTATATCTTGAGAAGAAAAATAATGAGATGGCAATAGAAGAGCAACAAAAGGCTGATGAAAAAATGATGTCTTTGGCTGAAGAACATAAGAAAGAAAAGGAGAAACTTCACAAGAAAATTCATGACCTGGAGAGAGGACTTGATGCAAAACAAGCATTGGAATTGGAGATAGAACGGCTGAAAGGAGCTTTCCAGGTAATGAATCACATTGGAGAGACTGATCTAGAAGAGAAGAAAAAACTGGAGGAAATCAAAATGGAGCTGCAGGAAAAAGAAGAGGAGTTGGAAGGCGTGGAAGATCTTCAACAGACACTGGTTGTTCAAGAGCGAAAAACTAATGACGAGTTGCAAGATGCCCGCAAAAAATTGATAAGTTGGATTGGATGCCCAAAGAAGGCTCCTCGAGCCATAATTTCTGTGAAAAGGATGGGTGAACTTGAGATTAAGCCATTTTTGGAAGCAGCCAAGAGAAAGTTTTCTGATGAAGTGAATGAGAAAAAAGCAACTAAAGCACAACTTCGCGAAAAATGGCAATTGAAAGCAATCGAGTGGTGCTCAAAGTGGGATGACTGTCTTAAAGATCCCAGCTGGCATCCGTTCAAAGTTGAGACTGATAAAGACGGGAAATCCATGGAAATTTTAGACGGAGAAGATGAAAAGCTAAAAAGTTTGAAGGATGAGTTCGGGGATGAGGTGCATGATGCAGTAGCTACAGCTCTGAAGGAGTTAAACGAGTACAACCCTAGTGGTAGGTACCCAGTACCGGAACTCTGGAATTTTAGGGAAGGAAGGAAAGCCTCGTTGAAGGAGGGTGTTTCCCATTTAATTAGGCAATGGAAATCAAATAAGGGAAAGAAAACTTATTGA

Protein sequence

>Msa0339620

MSKRSKHTHDSDYEYYESRYYEDLKDDYYKDKLKISDSRYRCPFCYNKDYYSLSELLRHASRILGDSRETDKEIAKHSALKMYIERYLDVKVDRIRLSGDRIASDKVPGVSNASDKTVNLSIANEKSRIMNVDKGQLANKNVVDDELFVWPWMVILANNVTNFDPKSGKYVGKNHKKIKEELNMKGFQPIRVTTLWNPRGQTPFAIVEFGKEWDGFDNAMKLERSFQAEHCGKRDYLGLREQERGDRLFGWMARHDDYNLKDIVGKHLKENVDLKTVSGKEAEDTRKAKTLVFGLANTLKQKTDELEQTASKYDEANAFLRKVMDQKEKMLEAFNEEISKMRQVEREYQEKVSKDHEIARRELEARRNELKSREKDLQKRQADNLNERNKLYLEKKNNEMAIEEQQKADEKMMSLAEEHKKEKEKLHKKIHDLERGLDAKQALELEIERLKGAFQVMNHIGETDLEEKKKLEEIKMELQEKEEELEGVEDLQQTLVVQERKTNDELQDARKKLISWIGCPKKAPRAIISVKRMGELEIKPFLEAAKRKFSDEVNEKKATKAQLREKWQLKAIEWCSKWDDCLKDPSWHPFKVETDKDGKSMEILDGEDEKLKSLKDEFGDEVHDAVATALKELNEYNPSGRYPVPELWNFREGRKASLKEGVSHLIRQWKSNKGKKTY*