AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0599890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0599890 MtrunA17_Chr4g0002171 98.043 460 9 0 1 460 1 460 0.0 933
Msa0599890 MtrunA17_Chr2g0297971 27.737 411 251 17 32 431 216 591 1.18e-31 127
Msa0599890 MtrunA17_Chr2g0297971 28.111 217 129 8 219 433 282 473 2.94e-15 78.2
Msa0599890 MtrunA17_Chr8g0391901 26.961 408 256 14 32 431 238 611 1.01e-30 125
Msa0599890 MtrunA17_Chr1g0192821 28.302 265 151 12 172 434 25 252 4.52e-15 77.8
Msa0599890 MtrunA17_Chr1g0192821 29.167 312 180 16 118 427 25 297 9.94e-15 76.6
Msa0599890 MtrunA17_Chr2g0286241 27.542 236 141 8 203 433 59 269 1.24e-13 73.2
Msa0599890 MtrunA17_Chr1g0197401 26.160 237 131 9 209 431 3 209 1.09e-12 70.1
Msa0599890 MtrunA17_Chr1g0198221 27.679 336 177 18 118 430 17 309 6.43e-12 67.4
Msa0599890 MtrunA17_Chr2g0322121 29.018 224 129 10 216 435 150 347 9.19e-12 67.4
Msa0599890 MtrunA17_Chr1g0196221 28.111 217 132 8 220 435 86 279 1.11e-11 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0599890 AT1G51550.1 59.735 452 162 6 18 458 21 463 0.0 528
Msa0599890 AT2G18915.1 29.095 409 246 18 32 431 204 577 1.13e-34 137
Msa0599890 AT2G18915.2 29.095 409 246 18 32 431 214 587 2.45e-34 136
Msa0599890 AT5G57360.2 28.954 411 246 19 32 431 213 588 1.85e-32 130
Msa0599890 AT5G57360.1 28.954 411 246 19 32 431 213 588 2.03e-32 130
Msa0599890 AT1G68050.1 28.818 406 246 19 32 431 227 595 3.64e-31 127
Msa0599890 AT2G36360.5 29.377 337 179 20 118 430 17 318 1.28e-13 73.2
Msa0599890 AT2G36360.2 28.916 332 178 19 118 430 17 309 8.73e-13 70.5
Msa0599890 AT2G36360.1 28.916 332 178 19 118 430 17 309 8.73e-13 70.5
Msa0599890 AT1G08420.1 29.464 224 128 10 216 435 171 368 9.13e-13 71.2
Msa0599890 AT2G36360.4 28.916 332 178 19 118 430 17 309 9.38e-13 70.5
Msa0599890 AT2G36360.3 28.916 332 178 19 118 430 17 309 9.60e-13 70.5
Msa0599890 AT1G08420.2 29.464 224 128 10 216 435 171 368 1.00e-12 71.2
Msa0599890 AT2G27210.1 29.018 224 129 10 216 435 160 357 1.52e-12 70.5
Msa0599890 AT2G27210.2 29.018 224 129 10 216 435 160 357 1.80e-12 70.1
Msa0599890 AT1G74150.4 26.103 272 169 9 172 441 56 297 1.83e-12 69.7
Msa0599890 AT1G18610.1 26.838 272 154 16 172 435 22 256 2.28e-12 69.3
Msa0599890 AT1G18610.1 25.360 347 209 16 118 451 22 331 2.30e-12 69.3
Msa0599890 AT1G18610.2 26.838 272 154 16 172 435 22 256 2.28e-12 69.3
Msa0599890 AT1G18610.2 25.360 347 209 16 118 451 22 331 2.30e-12 69.3
Msa0599890 AT1G74150.2 26.103 272 169 9 172 441 72 313 4.26e-12 68.6
Msa0599890 AT1G74150.1 26.103 272 169 9 172 441 72 313 4.38e-12 68.6
Msa0599890 AT1G74150.3 26.103 272 169 9 172 441 72 313 4.40e-12 68.6

Find 124 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAGGTAGGTTGTTAATTTA+TGG 0.139839 4_2:+40166176 Msa0599890:CDS
GAGTGAGAAGCTCTTGCTTT+AGG 0.168448 4_2:-40164451 None:intergenic
TTATTAGCATTATAGGTTTA+TGG 0.192786 4_2:+40166697 Msa0599890:three_prime_UTR
GCATTGTTTATTAGCATTAT+AGG 0.230546 4_2:+40166690 Msa0599890:three_prime_UTR
GATGATTTCCTTGTTCTCTT+TGG 0.258038 4_2:+40165657 Msa0599890:CDS
GACTTCACGGCCTTCGTTTA+GGG 0.260841 4_2:+40165865 Msa0599890:CDS
GCTTCATGATGTATGGTTAT+TGG 0.269291 4_2:+40166046 Msa0599890:CDS
GGACTTCACGGCCTTCGTTT+AGG 0.277584 4_2:+40165864 Msa0599890:CDS
GTTCAACCTGTTGAACCTTC+TGG 0.284085 4_2:+40166416 Msa0599890:CDS
TCTTGAGGTATGTTGGTTAT+TGG 0.294095 4_2:-40164148 None:intergenic
AATACAGCAACTACTCAATT+AGG 0.317271 4_2:+40166638 Msa0599890:three_prime_UTR
CAGGGTTTGTTTGAGGTAGA+TGG 0.319353 4_2:-40163964 None:intergenic
AGTGAGAAGCTCTTGCTTTA+GGG 0.320830 4_2:-40164450 None:intergenic
AGAGAAAGAATTGCATCTAT+AGG 0.321173 4_2:-40164199 None:intergenic
GTTTGTTGAAGCTATCTATA+TGG 0.332659 4_2:-40164057 None:intergenic
TCTGACTGTCTTGTCTTGTT+TGG 0.342606 4_2:+40164487 Msa0599890:CDS
ATGGTAATCCATGGAGGAAT+TGG 0.346210 4_2:+40165843 Msa0599890:CDS
CCTGTTGAACCTTCTGGACT+TGG 0.354019 4_2:+40166422 Msa0599890:CDS
TTTGTATGTGTTTGGTGGAA+TGG 0.359174 4_2:+40166382 Msa0599890:CDS
TGACTTGCATTGGAAGAAAT+AGG 0.362144 4_2:+40165985 Msa0599890:CDS
GGCATACCAAGTGGAAGATT+TGG 0.363811 4_2:+40165615 Msa0599890:CDS
CTAGTGGTTTCTTCCATGTC+TGG 0.368544 4_2:-40164094 None:intergenic
TCAACTCTAAGGACTAATTA+AGG 0.370650 4_2:+40166481 Msa0599890:exon
ATATGTCATGTTGAAGATAA+TGG 0.374652 4_2:-40163902 None:intergenic
GGTCGTTATTTGTATGTGTT+TGG 0.379139 4_2:+40166374 Msa0599890:CDS
TTTGAACTTGCTGTGGTTGA+AGG 0.384453 4_2:-40166260 None:intergenic
GAGAAAGAATTGCATCTATA+GGG 0.385396 4_2:-40164198 None:intergenic
TCTTCCATTTCAATATTCTC+TGG 0.397428 4_2:-40165581 None:intergenic
CGTGCCTGCGTAGATCCTTC+TGG 0.398486 4_2:+40166353 Msa0599890:CDS
GACTGTCTTGTCTTGTTTGG+TGG 0.399377 4_2:+40164490 Msa0599890:CDS
TTGTCAGATAGTCATTGTTT+CGG 0.403264 4_2:+40165906 Msa0599890:CDS
AAATGGAAGACAGTTCATTC+AGG 0.403941 4_2:+40165594 Msa0599890:CDS
CCATCGCCTCCGCCACGTTC+AGG 0.406508 4_2:+40165954 Msa0599890:CDS
GCTTGTGTTTGGCAGAAGAC+AGG 0.409294 4_2:-40163983 None:intergenic
GATTTCCTTGTTCTCTTTGG+AGG 0.411789 4_2:+40165660 Msa0599890:CDS
TTCTGGACTTGGATTTGATA+AGG 0.415767 4_2:+40166433 Msa0599890:CDS
TCATGGAAAATGATAGATGT+TGG 0.416089 4_2:+40165762 Msa0599890:CDS
TAGATGGTGTGGTAGAGAAT+TGG 0.419249 4_2:-40163948 None:intergenic
GAGCTTGTGCTTCAACTCTA+AGG 0.421662 4_2:+40166470 Msa0599890:CDS
CATGGAAAATGATAGATGTT+GGG 0.424832 4_2:+40165763 Msa0599890:CDS
GACACGTGGGTGGCATATAT+TGG 0.425018 4_2:+40165549 Msa0599890:CDS
TGGTCATACATGTGTGGAAA+TGG 0.431263 4_2:+40165635 Msa0599890:CDS
TTGTTTGGTGGTGGCTGTGA+TGG 0.433357 4_2:+40164502 Msa0599890:CDS
ACTCAAGTCTCTCTTGCATA+AGG 0.439993 4_2:-40164278 None:intergenic
AGTTATACTCAAAATTATAG+TGG 0.441590 4_2:+40164121 Msa0599890:CDS
ATTTCCAGAGAATATTGAAA+TGG 0.442502 4_2:+40165577 Msa0599890:CDS
CCAAGTCCAGAAGGTTCAAC+AGG 0.443345 4_2:-40166422 None:intergenic
TGTCTTGTCTTGTTTGGTGG+TGG 0.453433 4_2:+40164493 Msa0599890:CDS
CACTCTCTTTGAACTTGCTG+TGG 0.455008 4_2:-40166267 None:intergenic
TGGAAACGATGGAAATCAAA+TGG 0.459866 4_2:+40166302 Msa0599890:CDS
GAGTGTTGCTCCACCACCTA+GGG 0.460059 4_2:+40165785 Msa0599890:CDS
GGTAGGTTGTTAATTTATGG+AGG 0.460207 4_2:+40166179 Msa0599890:CDS
CGTCAAAATGATACATGGAT+TGG 0.465503 4_2:+40165702 Msa0599890:CDS
GTGTTTGGTGGAATGGTGGA+TGG 0.468198 4_2:+40166389 Msa0599890:CDS
CAGAAGACAGGGTTTGTTTG+AGG 0.469784 4_2:-40163971 None:intergenic
ATGAAGTGCTTCATGATGTA+TGG 0.478974 4_2:+40166039 Msa0599890:CDS
CTTGCCAAGGTTACATGAGA+TGG 0.479976 4_2:+40166072 Msa0599890:CDS
AAACTGATGAACATGATGAT+TGG 0.480670 4_2:-40164341 None:intergenic
GATGTAATCTTGAGGTATGT+TGG 0.481435 4_2:-40164155 None:intergenic
CTTGTGTTTGGCAGAAGACA+GGG 0.482677 4_2:-40163982 None:intergenic
CGTTATTTGTATGTGTTTGG+TGG 0.484542 4_2:+40166377 Msa0599890:CDS
GGACACACGTTGACTTGCAT+TGG 0.486949 4_2:+40165975 Msa0599890:CDS
CCTGAACGTGGCGGAGGCGA+TGG 0.489645 4_2:-40165954 None:intergenic
TTTGGAGGCATCAATGATCA+TGG 0.493134 4_2:+40165675 Msa0599890:CDS
AGAGAGTGTTGACGAGGATG+TGG 0.493745 4_2:+40166282 Msa0599890:CDS
CATGGAGGAATTGGACTTCA+CGG 0.495304 4_2:+40165852 Msa0599890:CDS
GGTATTTCACTTCCTAGAGT+TGG 0.496132 4_2:+40166131 Msa0599890:CDS
CTTATCTGATTGAAAATACA+TGG 0.496690 4_2:-40166570 None:intergenic
TATGGTTTGATGATGCTTGT+TGG 0.497168 4_2:-40164039 None:intergenic
ATAGTCATTGTTTCGGCACA+TGG 0.499649 4_2:+40165913 Msa0599890:CDS
GCATGAGCTCCCCTAGGTGG+TGG 0.503523 4_2:-40165795 None:intergenic
GGAGTGTTGCTCCACCACCT+AGG 0.505879 4_2:+40165784 Msa0599890:CDS
GTATGTGTTTGGTGGAATGG+TGG 0.507525 4_2:+40166385 Msa0599890:CDS
AGTTGGTCACACTGCTACAA+TGG 0.510947 4_2:+40166148 Msa0599890:CDS
CATAAATTGTCATACCCTCA+TGG 0.513611 4_2:+40164415 Msa0599890:CDS
TTTGAATCTCTTGCATGTCA+TGG 0.513878 4_2:-40164224 None:intergenic
CTAGGAAGTGAAATACCATC+TGG 0.516166 4_2:-40166125 None:intergenic
ACTTCACGGCCTTCGTTTAG+GGG 0.526092 4_2:+40165866 Msa0599890:CDS
TTGCATCTATAGGGAGAAGA+AGG 0.528249 4_2:-40164189 None:intergenic
AACGTGGCGGAGGCGATGGA+TGG 0.538917 4_2:-40165950 None:intergenic
ATGCCACCCACGTGTCATCA+AGG 0.541647 4_2:-40165542 None:intergenic
ACTTGCTGTGGTTGAAGGAA+TGG 0.543167 4_2:-40166255 None:intergenic
GTGTGTCCTGAACGTGGCGG+AGG 0.547895 4_2:-40165960 None:intergenic
GAATCCATCTCATGTAACCT+TGG 0.555112 4_2:-40166076 None:intergenic
CTATAAGCAAATATATCAGA+TGG 0.558115 4_2:+40164378 Msa0599890:CDS
GTAGCAGTGTGACCAACTCT+AGG 0.558419 4_2:-40166143 None:intergenic
GAGAAGACTCATCAAGACAT+AGG 0.561244 4_2:+40166201 Msa0599890:CDS
TGGTTATTGGATACTTGCCA+AGG 0.561263 4_2:+40166059 Msa0599890:CDS
TTTGGTGGTGGCTGTGATGG+AGG 0.563680 4_2:+40164505 Msa0599890:CDS
TTGCATCGACGACAAGAGAA+TGG 0.566710 4_2:+40165824 Msa0599890:CDS
AGACTTGAGTTCAACATGTG+TGG 0.574605 4_2:+40164291 Msa0599890:CDS
GACAAGAGAATGGTAATCCA+TGG 0.574745 4_2:+40165834 Msa0599890:CDS
GAAACCGTCAAAATGATACA+TGG 0.591830 4_2:+40165697 Msa0599890:CDS
GCCTTCGTTTAGGGGACACA+TGG 0.593734 4_2:+40165874 Msa0599890:CDS
TGATGCCTCCAAAGAGAACA+AGG 0.601552 4_2:-40165665 None:intergenic
CAAGCAGCATGAGCTCCCCT+AGG 0.602113 4_2:-40165801 None:intergenic
TTATCAAATCCAAGTCCAGA+AGG 0.606895 4_2:-40166431 None:intergenic
GATTTACAAAACATACCAGA+TGG 0.608221 4_2:+40166110 Msa0599890:CDS
TTTGTTTGAGGTAGATGGTG+TGG 0.609636 4_2:-40163959 None:intergenic
TTGAGTATAACTAACACTAG+TGG 0.610091 4_2:-40164110 None:intergenic
TATGCTAACACATGACATAG+TGG 0.613330 4_2:-40166541 None:intergenic
ACATACAAATAACGACCAGA+AGG 0.627124 4_2:-40166368 None:intergenic
GACGACACCTTGATGACACG+TGG 0.627520 4_2:+40165535 Msa0599890:CDS
GTATGACCAAATCTTCCACT+TGG 0.629532 4_2:-40165621 None:intergenic
CGTGAAGTCCAATTCCTCCA+TGG 0.635655 4_2:-40165851 None:intergenic
GCAGCATGAGCTCCCCTAGG+TGG 0.638154 4_2:-40165798 None:intergenic
GGAAATCTAAATCTCCATGA+GGG 0.645796 4_2:-40164429 None:intergenic
GTTATACACAATGAAAACAA+AGG 0.653684 4_2:+40165729 Msa0599890:CDS
CGATGAAACGATCTAGACTT+CGG 0.657515 4_2:-40166332 None:intergenic
ACACCTTGATGACACGTGGG+TGG 0.657803 4_2:+40165539 Msa0599890:CDS
GTCAACGTGTGTCCTGAACG+TGG 0.663195 4_2:-40165966 None:intergenic
GTTCATTCAGGCATACCAAG+TGG 0.677159 4_2:+40165606 Msa0599890:CDS
TCCATGTGTCCCCTAAACGA+AGG 0.678498 4_2:-40165875 None:intergenic
GGGAAATCTAAATCTCCATG+AGG 0.678724 4_2:-40164430 None:intergenic
AGTGTTGCTCCACCACCTAG+GGG 0.681365 4_2:+40165786 Msa0599890:CDS
ACGACCAGAAGGATCTACGC+AGG 0.686097 4_2:-40166357 None:intergenic
GTTCAAAGAGAGTGTTGACG+AGG 0.688260 4_2:+40166276 Msa0599890:CDS
TGACGAGGATGTGGAAACGA+TGG 0.693492 4_2:+40166291 Msa0599890:CDS
ATAGTGAAGATGTAATCTTG+AGG 0.705437 4_2:-40164163 None:intergenic
AAGAGAATGGTAATCCATGG+AGG 0.711153 4_2:+40165837 Msa0599890:CDS
TAACTTCATCTGAAACACTG+TGG 0.716627 4_2:+40164251 Msa0599890:CDS
ACGACACCTTGATGACACGT+GGG 0.729987 4_2:+40165536 Msa0599890:CDS
AAGATTTGGTCATACATGTG+TGG 0.738733 4_2:+40165629 Msa0599890:CDS
AACGTGTGTCCTGAACGTGG+CGG 0.807074 4_2:-40165963 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGTTTATGTTTTGTTTTTT+TGG - chr4_2:40164012-40164031 None:intergenic 15.0%
!! AAATAGAAAGAAAAAAAACA+TGG - chr4_2:40164544-40164563 None:intergenic 15.0%
!!! ATAAATTTAGAAGTTGATTA+CGG + chr4_2:40165085-40165104 Msa0599890:intron 15.0%
!!! TATAAAGATTGATTTTTGAC+AGG - chr4_2:40163868-40163887 None:intergenic 20.0%
!!! TTATGTTTTGTTTTTTTGGT+TGG - chr4_2:40164008-40164027 None:intergenic 20.0%
!! AAAAAAAAATAAACCAGACA+TGG + chr4_2:40164081-40164100 Msa0599890:exon 20.0%
!! AGTTATACTCAAAATTATAG+TGG + chr4_2:40164121-40164140 Msa0599890:CDS 20.0%
!!! GTTTTTTTTCTTTCTATTTG+TGG + chr4_2:40164545-40164564 Msa0599890:intron 20.0%
!! TTACAGTAATTGATGTAAAT+CGG + chr4_2:40165200-40165219 Msa0599890:intron 20.0%
!! TGTATAAATAATTCATATGG+TGG - chr4_2:40165325-40165344 None:intergenic 20.0%
!! CAGTGTATAAATAATTCATA+TGG - chr4_2:40165328-40165347 None:intergenic 20.0%
!!! GTGAAAATTGTAAAAACTTT+TGG + chr4_2:40166668-40166687 Msa0599890:three_prime_UTR 20.0%
!! TTATTAGCATTATAGGTTTA+TGG + chr4_2:40166697-40166716 Msa0599890:three_prime_UTR 20.0%
! ATATGTCATGTTGAAGATAA+TGG - chr4_2:40163905-40163924 None:intergenic 25.0%
! CTATAAGCAAATATATCAGA+TGG + chr4_2:40164378-40164397 Msa0599890:CDS 25.0%
! ATTATTTACCCTAAAGAGAA+AGG + chr4_2:40164703-40164722 Msa0599890:intron 25.0%
! GTTTAATTCCTTTCTCTTTA+GGG - chr4_2:40164714-40164733 None:intergenic 25.0%
! TGTTTAATTCCTTTCTCTTT+AGG - chr4_2:40164715-40164734 None:intergenic 25.0%
! TAAAGAGAAAGGAATTAAAC+AGG + chr4_2:40164714-40164733 Msa0599890:intron 25.0%
!!! GCATTGACTTAAAAATTAGA+CGG - chr4_2:40164882-40164901 None:intergenic 25.0%
! TACAGTAATTGATGTAAATC+GGG + chr4_2:40165201-40165220 Msa0599890:intron 25.0%
! AGGTAAAAAAATCCTTCTTA+TGG - chr4_2:40165276-40165295 None:intergenic 25.0%
!! TTATTTATACACTGCCTTTT+TGG + chr4_2:40165334-40165353 Msa0599890:intron 25.0%
!!! TTTGTTTTGTGCTTTGTTTT+AGG + chr4_2:40165513-40165532 Msa0599890:intron 25.0%
! ATTTCCAGAGAATATTGAAA+TGG + chr4_2:40165577-40165596 Msa0599890:CDS 25.0%
! GTTATACACAATGAAAACAA+AGG + chr4_2:40165729-40165748 Msa0599890:CDS 25.0%
!! AGAAATAGGACAATACTTTT+CGG + chr4_2:40165999-40166018 Msa0599890:CDS 25.0%
!! ACATAGGAAAAATGACTTTT+GGG + chr4_2:40166217-40166236 Msa0599890:CDS 25.0%
! CTTATCTGATTGAAAATACA+TGG - chr4_2:40166573-40166592 None:intergenic 25.0%
! GCATTGTTTATTAGCATTAT+AGG + chr4_2:40166690-40166709 Msa0599890:three_prime_UTR 25.0%
!! ATTGATTTTTGACAGGTTAG+TGG - chr4_2:40163861-40163880 None:intergenic 30.0%
! GTTTGTTGAAGCTATCTATA+TGG - chr4_2:40164060-40164079 None:intergenic 30.0%
TTGAGTATAACTAACACTAG+TGG - chr4_2:40164113-40164132 None:intergenic 30.0%
ATAGTGAAGATGTAATCTTG+AGG - chr4_2:40164166-40164185 None:intergenic 30.0%
GAGAAAGAATTGCATCTATA+GGG - chr4_2:40164201-40164220 None:intergenic 30.0%
AGAGAAAGAATTGCATCTAT+AGG - chr4_2:40164202-40164221 None:intergenic 30.0%
AAACTGATGAACATGATGAT+TGG - chr4_2:40164344-40164363 None:intergenic 30.0%
! ATCATGTTCATCAGTTTTCA+TGG + chr4_2:40164347-40164366 Msa0599890:CDS 30.0%
TTTCATAAGTGAGATTCACA+TGG + chr4_2:40164598-40164617 Msa0599890:intron 30.0%
GTATCGTAATTGTTACAATG+AGG + chr4_2:40164841-40164860 Msa0599890:intron 30.0%
TTAGACCGTTAATAGACAAA+AGG + chr4_2:40164948-40164967 Msa0599890:intron 30.0%
! TTAGAAGTTGATTACGGTTT+AGG + chr4_2:40165091-40165110 Msa0599890:intron 30.0%
TACTTGATCTTACCATAAGA+AGG + chr4_2:40165261-40165280 Msa0599890:intron 30.0%
!!! AAGAAGGATTTTTTTACCTG+TGG + chr4_2:40165277-40165296 Msa0599890:intron 30.0%
ATTAGTCAAATCTCGACTAT+TGG + chr4_2:40165371-40165390 Msa0599890:intron 30.0%
TCTTCCATTTCAATATTCTC+TGG - chr4_2:40165584-40165603 None:intergenic 30.0%
! CAATCCATGTATCATTTTGA+CGG - chr4_2:40165704-40165723 None:intergenic 30.0%
!!! ACAAAGGCATTACATTTTCA+TGG + chr4_2:40165745-40165764 Msa0599890:CDS 30.0%
TCATGGAAAATGATAGATGT+TGG + chr4_2:40165762-40165781 Msa0599890:CDS 30.0%
CATGGAAAATGATAGATGTT+GGG + chr4_2:40165763-40165782 Msa0599890:CDS 30.0%
TTGTCAGATAGTCATTGTTT+CGG + chr4_2:40165906-40165925 Msa0599890:CDS 30.0%
GATTTACAAAACATACCAGA+TGG + chr4_2:40166110-40166129 Msa0599890:CDS 30.0%
! GACATAGGAAAAATGACTTT+TGG + chr4_2:40166216-40166235 Msa0599890:CDS 30.0%
!! TTTGATAAGGAGCTTTTTCT+TGG + chr4_2:40166446-40166465 Msa0599890:CDS 30.0%
!! TTGATAAGGAGCTTTTTCTT+GGG + chr4_2:40166447-40166466 Msa0599890:CDS 30.0%
! TCAACTCTAAGGACTAATTA+AGG + chr4_2:40166481-40166500 Msa0599890:exon 30.0%
AATACAGCAACTACTCAATT+AGG + chr4_2:40166638-40166657 Msa0599890:three_prime_UTR 30.0%
GGTAGAGAATTGGTAAAAAC+TGG - chr4_2:40163941-40163960 None:intergenic 35.0%
!!! TTTTTTGGTTGGCTTGTGTT+TGG - chr4_2:40163997-40164016 None:intergenic 35.0%
!! TATGGTTTGATGATGCTTGT+TGG - chr4_2:40164042-40164061 None:intergenic 35.0%
! TCTTGAGGTATGTTGGTTAT+TGG - chr4_2:40164151-40164170 None:intergenic 35.0%
GATGTAATCTTGAGGTATGT+TGG - chr4_2:40164158-40164177 None:intergenic 35.0%
TTTGAATCTCTTGCATGTCA+TGG - chr4_2:40164227-40164246 None:intergenic 35.0%
! TAACTTCATCTGAAACACTG+TGG + chr4_2:40164251-40164270 Msa0599890:CDS 35.0%
CATAAATTGTCATACCCTCA+TGG + chr4_2:40164415-40164434 Msa0599890:CDS 35.0%
GGAAATCTAAATCTCCATGA+GGG - chr4_2:40164432-40164451 None:intergenic 35.0%
!!! ATGGCTTCTAGTTTTAGACT+AGG + chr4_2:40164617-40164636 Msa0599890:intron 35.0%
ATTAGACGGTTAGTAGACAA+AGG - chr4_2:40164868-40164887 None:intergenic 35.0%
! CAGGTCCTTTTGTCTATTAA+CGG - chr4_2:40164956-40164975 None:intergenic 35.0%
AAGGACCTGATTGTAACAAT+TGG + chr4_2:40164967-40164986 Msa0599890:intron 35.0%
AGGACCTGATTGTAACAATT+GGG + chr4_2:40164968-40164987 Msa0599890:intron 35.0%
GTGGCATAATCTCCAAATAT+AGG - chr4_2:40165306-40165325 None:intergenic 35.0%
!!! CTAGGTTTTGAAGTCCAAAA+AGG - chr4_2:40165351-40165370 None:intergenic 35.0%
AGTCGAGATTTGACTAATCT+AGG - chr4_2:40165369-40165388 None:intergenic 35.0%
TTTCACTAAAGATGCTTCAG+AGG + chr4_2:40165453-40165472 Msa0599890:intron 35.0%
AAATGGAAGACAGTTCATTC+AGG + chr4_2:40165594-40165613 Msa0599890:CDS 35.0%
! AAGATTTGGTCATACATGTG+TGG + chr4_2:40165629-40165648 Msa0599890:CDS 35.0%
GATGATTTCCTTGTTCTCTT+TGG + chr4_2:40165657-40165676 Msa0599890:CDS 35.0%
GAAACCGTCAAAATGATACA+TGG + chr4_2:40165697-40165716 Msa0599890:CDS 35.0%
CGTCAAAATGATACATGGAT+TGG + chr4_2:40165702-40165721 Msa0599890:CDS 35.0%
! TGACTTGCATTGGAAGAAAT+AGG + chr4_2:40165985-40166004 Msa0599890:CDS 35.0%
! AATAGGACAATACTTTTCGG+AGG + chr4_2:40166002-40166021 Msa0599890:CDS 35.0%
! ATGAAGTGCTTCATGATGTA+TGG + chr4_2:40166039-40166058 Msa0599890:CDS 35.0%
GCTTCATGATGTATGGTTAT+TGG + chr4_2:40166046-40166065 Msa0599890:CDS 35.0%
GGAGGTAGGTTGTTAATTTA+TGG + chr4_2:40166176-40166195 Msa0599890:CDS 35.0%
GGTAGGTTGTTAATTTATGG+AGG + chr4_2:40166179-40166198 Msa0599890:CDS 35.0%
TGGAAACGATGGAAATCAAA+TGG + chr4_2:40166302-40166321 Msa0599890:CDS 35.0%
ACATACAAATAACGACCAGA+AGG - chr4_2:40166371-40166390 None:intergenic 35.0%
GGTCGTTATTTGTATGTGTT+TGG + chr4_2:40166374-40166393 Msa0599890:CDS 35.0%
CGTTATTTGTATGTGTTTGG+TGG + chr4_2:40166377-40166396 Msa0599890:CDS 35.0%
! TTTGTATGTGTTTGGTGGAA+TGG + chr4_2:40166382-40166401 Msa0599890:CDS 35.0%
TTATCAAATCCAAGTCCAGA+AGG - chr4_2:40166434-40166453 None:intergenic 35.0%
TTCTGGACTTGGATTTGATA+AGG + chr4_2:40166433-40166452 Msa0599890:CDS 35.0%
!! TGATAAGGAGCTTTTTCTTG+GGG + chr4_2:40166448-40166467 Msa0599890:CDS 35.0%
TATGCTAACACATGACATAG+TGG - chr4_2:40166544-40166563 None:intergenic 35.0%
TAGATGGTGTGGTAGAGAAT+TGG - chr4_2:40163951-40163970 None:intergenic 40.0%
! TTTGTTTGAGGTAGATGGTG+TGG - chr4_2:40163962-40163981 None:intergenic 40.0%
TTGCATCTATAGGGAGAAGA+AGG - chr4_2:40164192-40164211 None:intergenic 40.0%
ACTCAAGTCTCTCTTGCATA+AGG - chr4_2:40164281-40164300 None:intergenic 40.0%
AGACTTGAGTTCAACATGTG+TGG + chr4_2:40164291-40164310 Msa0599890:CDS 40.0%
GGGAAATCTAAATCTCCATG+AGG - chr4_2:40164433-40164452 None:intergenic 40.0%
AGTGAGAAGCTCTTGCTTTA+GGG - chr4_2:40164453-40164472 None:intergenic 40.0%
! TCTGACTGTCTTGTCTTGTT+TGG + chr4_2:40164487-40164506 Msa0599890:CDS 40.0%
GCACTAACTTAGACCAACAT+TGG + chr4_2:40164900-40164919 Msa0599890:intron 40.0%
! TAGACCAACATTGGCTACAT+AGG + chr4_2:40164909-40164928 Msa0599890:intron 40.0%
ACTGCCCAATTGTTACAATC+AGG - chr4_2:40164975-40164994 None:intergenic 40.0%
!! CAATTGGGCAGTTTGCTATA+TGG + chr4_2:40164983-40165002 Msa0599890:intron 40.0%
TTGGTCCTCGTGTTTCAATT+GGG - chr4_2:40165022-40165041 None:intergenic 40.0%
TTTGGTCCTCGTGTTTCAAT+TGG - chr4_2:40165023-40165042 None:intergenic 40.0%
GGACCAAAATTGTACAATCC+TGG + chr4_2:40165035-40165054 Msa0599890:intron 40.0%
! GTGCCAGGATTGTACAATTT+TGG - chr4_2:40165041-40165060 None:intergenic 40.0%
TGATTACGGTTTAGGTGATG+TGG + chr4_2:40165099-40165118 Msa0599890:intron 40.0%
GCATTTCATTCAACTTGCCT+AGG + chr4_2:40165231-40165250 Msa0599890:intron 40.0%
AGATCAAGTAGAAGTCTCCT+AGG - chr4_2:40165251-40165270 None:intergenic 40.0%
TACCTGTGGACTCCTATATT+TGG + chr4_2:40165291-40165310 Msa0599890:intron 40.0%
GTATGACCAAATCTTCCACT+TGG - chr4_2:40165624-40165643 None:intergenic 40.0%
TGGTCATACATGTGTGGAAA+TGG + chr4_2:40165635-40165654 Msa0599890:CDS 40.0%
GATTTCCTTGTTCTCTTTGG+AGG + chr4_2:40165660-40165679 Msa0599890:CDS 40.0%
!! TTTGGAGGCATCAATGATCA+TGG + chr4_2:40165675-40165694 Msa0599890:CDS 40.0%
GACAAGAGAATGGTAATCCA+TGG + chr4_2:40165834-40165853 Msa0599890:CDS 40.0%
AAGAGAATGGTAATCCATGG+AGG + chr4_2:40165837-40165856 Msa0599890:CDS 40.0%
ATGGTAATCCATGGAGGAAT+TGG + chr4_2:40165843-40165862 Msa0599890:CDS 40.0%
ATAGTCATTGTTTCGGCACA+TGG + chr4_2:40165913-40165932 Msa0599890:CDS 40.0%
! ACAATACTTTTCGGAGGTAG+AGG + chr4_2:40166008-40166027 Msa0599890:CDS 40.0%
TGGTTATTGGATACTTGCCA+AGG + chr4_2:40166059-40166078 Msa0599890:CDS 40.0%
GAATCCATCTCATGTAACCT+TGG - chr4_2:40166079-40166098 None:intergenic 40.0%
CTAGGAAGTGAAATACCATC+TGG - chr4_2:40166128-40166147 None:intergenic 40.0%
GGTATTTCACTTCCTAGAGT+TGG + chr4_2:40166131-40166150 Msa0599890:CDS 40.0%
! CACACTGCTACAATGGTTTT+AGG + chr4_2:40166155-40166174 Msa0599890:CDS 40.0%
!!! ACTGCTACAATGGTTTTAGG+AGG + chr4_2:40166158-40166177 Msa0599890:CDS 40.0%
!!! CTACAATGGTTTTAGGAGGT+AGG + chr4_2:40166162-40166181 Msa0599890:CDS 40.0%
GAGAAGACTCATCAAGACAT+AGG + chr4_2:40166201-40166220 Msa0599890:CDS 40.0%
!! TTTGAACTTGCTGTGGTTGA+AGG - chr4_2:40166263-40166282 None:intergenic 40.0%
CGATGAAACGATCTAGACTT+CGG - chr4_2:40166335-40166354 None:intergenic 40.0%
! CAGGGTTTGTTTGAGGTAGA+TGG - chr4_2:40163967-40163986 None:intergenic 45.0%
! CAGAAGACAGGGTTTGTTTG+AGG - chr4_2:40163974-40163993 None:intergenic 45.0%
CTTGTGTTTGGCAGAAGACA+GGG - chr4_2:40163985-40164004 None:intergenic 45.0%
CTAGTGGTTTCTTCCATGTC+TGG - chr4_2:40164097-40164116 None:intergenic 45.0%
GAGTGAGAAGCTCTTGCTTT+AGG - chr4_2:40164454-40164473 None:intergenic 45.0%
!! GACTGTCTTGTCTTGTTTGG+TGG + chr4_2:40164490-40164509 Msa0599890:CDS 45.0%
!! TGTCTTGTCTTGTTTGGTGG+TGG + chr4_2:40164493-40164512 Msa0599890:CDS 45.0%
AGAGACTCAAGTCGCACAAT+TGG - chr4_2:40164818-40164837 None:intergenic 45.0%
TTGTGCGACTTGAGTCTCTT+AGG + chr4_2:40164819-40164838 Msa0599890:intron 45.0%
AGAGCCTATGTAGCCAATGT+TGG - chr4_2:40164916-40164935 None:intergenic 45.0%
!! TTGGGCAGTTTGCTATATGG+AGG + chr4_2:40164986-40165005 Msa0599890:intron 45.0%
ATTCGCCCAATTGAAACACG+AGG + chr4_2:40165014-40165033 Msa0599890:intron 45.0%
! CACTTTTGTACTCAAGTGCC+AGG - chr4_2:40165056-40165075 None:intergenic 45.0%
CTCCAAATATAGGAGTCCAC+AGG - chr4_2:40165296-40165315 None:intergenic 45.0%
GTTCATTCAGGCATACCAAG+TGG + chr4_2:40165606-40165625 Msa0599890:CDS 45.0%
GGCATACCAAGTGGAAGATT+TGG + chr4_2:40165615-40165634 Msa0599890:CDS 45.0%
TGATGCCTCCAAAGAGAACA+AGG - chr4_2:40165668-40165687 None:intergenic 45.0%
! TTGCATCGACGACAAGAGAA+TGG + chr4_2:40165824-40165843 Msa0599890:CDS 45.0%
CATGGAGGAATTGGACTTCA+CGG + chr4_2:40165852-40165871 Msa0599890:CDS 45.0%
! CTTTTCGGAGGTAGAGGTTT+AGG + chr4_2:40166014-40166033 Msa0599890:CDS 45.0%
CTTGCCAAGGTTACATGAGA+TGG + chr4_2:40166072-40166091 Msa0599890:CDS 45.0%
AGTTGGTCACACTGCTACAA+TGG + chr4_2:40166148-40166167 Msa0599890:CDS 45.0%
!! ACTTGCTGTGGTTGAAGGAA+TGG - chr4_2:40166258-40166277 None:intergenic 45.0%
!! CACTCTCTTTGAACTTGCTG+TGG - chr4_2:40166270-40166289 None:intergenic 45.0%
!! GTTCAAAGAGAGTGTTGACG+AGG + chr4_2:40166276-40166295 Msa0599890:CDS 45.0%
! GTATGTGTTTGGTGGAATGG+TGG + chr4_2:40166385-40166404 Msa0599890:CDS 45.0%
GTTCAACCTGTTGAACCTTC+TGG + chr4_2:40166416-40166435 Msa0599890:CDS 45.0%
GAGCTTGTGCTTCAACTCTA+AGG + chr4_2:40166470-40166489 Msa0599890:CDS 45.0%
GCTTGTGTTTGGCAGAAGAC+AGG - chr4_2:40163986-40164005 None:intergenic 50.0%
!! TTGTTTGGTGGTGGCTGTGA+TGG + chr4_2:40164502-40164521 Msa0599890:CDS 50.0%
! ACGACACCTTGATGACACGT+GGG + chr4_2:40165536-40165555 Msa0599890:CDS 50.0%
GACACGTGGGTGGCATATAT+TGG + chr4_2:40165549-40165568 Msa0599890:CDS 50.0%
CGTGAAGTCCAATTCCTCCA+TGG - chr4_2:40165854-40165873 None:intergenic 50.0%
GACTTCACGGCCTTCGTTTA+GGG + chr4_2:40165865-40165884 Msa0599890:CDS 50.0%
ACTTCACGGCCTTCGTTTAG+GGG + chr4_2:40165866-40165885 Msa0599890:CDS 50.0%
TCCATGTGTCCCCTAAACGA+AGG - chr4_2:40165878-40165897 None:intergenic 50.0%
!! GGACACACGTTGACTTGCAT+TGG + chr4_2:40165975-40165994 Msa0599890:CDS 50.0%
GTAGCAGTGTGACCAACTCT+AGG - chr4_2:40166146-40166165 None:intergenic 50.0%
!! AGAGAGTGTTGACGAGGATG+TGG + chr4_2:40166282-40166301 Msa0599890:CDS 50.0%
TGACGAGGATGTGGAAACGA+TGG + chr4_2:40166291-40166310 Msa0599890:CDS 50.0%
! GTGTTTGGTGGAATGGTGGA+TGG + chr4_2:40166389-40166408 Msa0599890:CDS 50.0%
CCAAGTCCAGAAGGTTCAAC+AGG - chr4_2:40166425-40166444 None:intergenic 50.0%
CCTGTTGAACCTTCTGGACT+TGG + chr4_2:40166422-40166441 Msa0599890:CDS 50.0%
!! TTTGGTGGTGGCTGTGATGG+AGG + chr4_2:40164505-40164524 Msa0599890:CDS 55.0%
! GACGACACCTTGATGACACG+TGG + chr4_2:40165535-40165554 Msa0599890:CDS 55.0%
! ACACCTTGATGACACGTGGG+TGG + chr4_2:40165539-40165558 Msa0599890:CDS 55.0%
ATGCCACCCACGTGTCATCA+AGG - chr4_2:40165545-40165564 None:intergenic 55.0%
! GAGTGTTGCTCCACCACCTA+GGG + chr4_2:40165785-40165804 Msa0599890:CDS 55.0%
! AGTGTTGCTCCACCACCTAG+GGG + chr4_2:40165786-40165805 Msa0599890:CDS 55.0%
GGACTTCACGGCCTTCGTTT+AGG + chr4_2:40165864-40165883 Msa0599890:CDS 55.0%
GCCTTCGTTTAGGGGACACA+TGG + chr4_2:40165874-40165893 Msa0599890:CDS 55.0%
AACGTGTGTCCTGAACGTGG+CGG - chr4_2:40165966-40165985 None:intergenic 55.0%
GTCAACGTGTGTCCTGAACG+TGG - chr4_2:40165969-40165988 None:intergenic 55.0%
ACGACCAGAAGGATCTACGC+AGG - chr4_2:40166360-40166379 None:intergenic 55.0%
! GTGGTGGCTGTGATGGAGGT+TGG + chr4_2:40164509-40164528 Msa0599890:intron 60.0%
!! GGAGTGTTGCTCCACCACCT+AGG + chr4_2:40165784-40165803 Msa0599890:CDS 60.0%
CAAGCAGCATGAGCTCCCCT+AGG - chr4_2:40165804-40165823 None:intergenic 60.0%
CGTGCCTGCGTAGATCCTTC+TGG + chr4_2:40166353-40166372 Msa0599890:CDS 60.0%
GCATGAGCTCCCCTAGGTGG+TGG - chr4_2:40165798-40165817 None:intergenic 65.0%
GCAGCATGAGCTCCCCTAGG+TGG - chr4_2:40165801-40165820 None:intergenic 65.0%
! AACGTGGCGGAGGCGATGGA+TGG - chr4_2:40165953-40165972 None:intergenic 65.0%
GTGTGTCCTGAACGTGGCGG+AGG - chr4_2:40165963-40165982 None:intergenic 65.0%
! CCTGAACGTGGCGGAGGCGA+TGG - chr4_2:40165957-40165976 None:intergenic 70.0%
CCATCGCCTCCGCCACGTTC+AGG + chr4_2:40165954-40165973 Msa0599890:CDS 70.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 40163858 40166754 40163858 ID=Msa0599890;Name=Msa0599890
chr4_2 mRNA 40163858 40166754 40163858 ID=Msa0599890-mRNA-1;Parent=Msa0599890;Name=Msa0599890-mRNA-1;_AED=0.01;_eAED=0.01;_QI=242|1|1|1|1|1|2|264|460
chr4_2 exon 40163858 40164526 40163858 ID=Msa0599890-mRNA-1:exon:8736;Parent=Msa0599890-mRNA-1
chr4_2 exon 40165535 40166754 40165535 ID=Msa0599890-mRNA-1:exon:8737;Parent=Msa0599890-mRNA-1
chr4_2 five_prime_UTR 40163858 40164099 40163858 ID=Msa0599890-mRNA-1:five_prime_utr;Parent=Msa0599890-mRNA-1
chr4_2 CDS 40164100 40164526 40164100 ID=Msa0599890-mRNA-1:cds;Parent=Msa0599890-mRNA-1
chr4_2 CDS 40165535 40166490 40165535 ID=Msa0599890-mRNA-1:cds;Parent=Msa0599890-mRNA-1
chr4_2 three_prime_UTR 40166491 40166754 40166491 ID=Msa0599890-mRNA-1:three_prime_utr;Parent=Msa0599890-mRNA-1
Gene Sequence

>Msa0599890

ATGGAAGAAACCACTAGTGTTAGTTATACTCAAAATTATAGTGGATCACCAATAACCAACATACCTCAAGATTACATCTTCACTATTATCCTTCTTCTCCCTATAGATGCAATTCTTTCTCTTTCCATGACATGCAAGAGATTCAAAGCTTTAACTTCATCTGAAACACTGTGGAAATCCTTATGCAAGAGAGACTTGAGTTCAACATGTGTGGATTCATTAGTCAAGTCTTGTAATAATTCCAATCATCATGTTCATCAGTTTTCATGGATGAAACTCTATAAGCAAATATATCAGATGGATTCTGTTTGTTGTCATAAATTGTCATACCCTCATGGAGATTTAGATTTCCCTAAAGCAAGAGCTTCTCACTCTCTCAACTTTGTTTCTGACTGTCTTGTCTTGTTTGGTGGTGGCTGTGATGGAGGACGACACCTTGATGACACGTGGGTGGCATATATTGGTAACGATTTCCAGAGAATATTGAAATGGAAGACAGTTCATTCAGGCATACCAAGTGGAAGATTTGGTCATACATGTGTGGAAATGGATGATTTCCTTGTTCTCTTTGGAGGCATCAATGATCATGGAAACCGTCAAAATGATACATGGATTGGAAAAGTTATACACAATGAAAACAAAGGCATTACATTTTCATGGAAAATGATAGATGTTGGGAGTGTTGCTCCACCACCTAGGGGAGCTCATGCTGCTTGTTGCATCGACGACAAGAGAATGGTAATCCATGGAGGAATTGGACTTCACGGCCTTCGTTTAGGGGACACATGGATCTTAGAATTGTCAGATAGTCATTGTTTCGGCACATGGCATGAGATTGCTATCCATCCATCGCCTCCGCCACGTTCAGGACACACGTTGACTTGCATTGGAAGAAATAGGACAATACTTTTCGGAGGTAGAGGTTTAGGTTATGAAGTGCTTCATGATGTATGGTTATTGGATACTTGCCAAGGTTACATGAGATGGATTCAAGTACTTTATGATTTACAAAACATACCAGATGGTATTTCACTTCCTAGAGTTGGTCACACTGCTACAATGGTTTTAGGAGGTAGGTTGTTAATTTATGGAGGAGAAGACTCATCAAGACATAGGAAAAATGACTTTTGGGTATTAGATATTAGTTCCATTCCTTCAACCACAGCAAGTTCAAAGAGAGTGTTGACGAGGATGTGGAAACGATGGAAATCAAATGGATATGAACCGAAGTCTAGATCGTTTCATCGTGCCTGCGTAGATCCTTCTGGTCGTTATTTGTATGTGTTTGGTGGAATGGTGGATGGTTTAGTTCAACCTGTTGAACCTTCTGGACTTGGATTTGATAAGGAGCTTTTTCTTGGGGAGCTTGTGCTTCAACTCTAA

Protein sequence

>Msa0599890

MEETTSVSYTQNYSGSPITNIPQDYIFTIILLLPIDAILSLSMTCKRFKALTSSETLWKSLCKRDLSSTCVDSLVKSCNNSNHHVHQFSWMKLYKQIYQMDSVCCHKLSYPHGDLDFPKARASHSLNFVSDCLVLFGGGCDGGRHLDDTWVAYIGNDFQRILKWKTVHSGIPSGRFGHTCVEMDDFLVLFGGINDHGNRQNDTWIGKVIHNENKGITFSWKMIDVGSVAPPPRGAHAACCIDDKRMVIHGGIGLHGLRLGDTWILELSDSHCFGTWHEIAIHPSPPPRSGHTLTCIGRNRTILFGGRGLGYEVLHDVWLLDTCQGYMRWIQVLYDLQNIPDGISLPRVGHTATMVLGGRLLIYGGEDSSRHRKNDFWVLDISSIPSTTASSKRVLTRMWKRWKSNGYEPKSRSFHRACVDPSGRYLYVFGGMVDGLVQPVEPSGLGFDKELFLGELVLQL*