AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0437960

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0437960 MtrunA17_Chr2g0297261 87.739 261 13 1 1 261 165 406 3.28e-166 466
Msa0437960 MtrunA17_Chr2g0329931 61.686 261 81 1 1 261 172 413 1.06e-114 335
Msa0437960 MtrunA17_Chr8g0342861 61.303 261 82 1 1 261 172 413 7.77e-114 333
Msa0437960 MtrunA17_Chr2g0299681 62.069 261 80 1 1 261 172 413 8.66e-114 333
Msa0437960 MtrunA17_Chr4g0070981 61.686 261 81 1 1 261 172 413 9.98e-114 333
Msa0437960 MtrunA17_Chr1g0169331 46.269 268 117 5 1 261 151 398 1.19e-72 227
Msa0437960 MtrunA17_Chr8g0342851 49.362 235 99 2 28 261 104 319 3.22e-71 221
Msa0437960 MtrunA17_Chr7g0247191 35.827 254 141 4 2 254 281 513 9.79e-47 163
Msa0437960 MtrunA17_Chr7g0247181 35.039 254 143 4 2 254 271 503 1.79e-46 162
Msa0437960 MtrunA17_Chr7g0247221 35.039 254 143 4 2 254 274 506 2.15e-46 162
Msa0437960 MtrunA17_Chr1g0149251 34.231 260 148 5 1 257 97 336 1.21e-44 153
Msa0437960 MtrunA17_Chr2g0330401 33.745 243 141 2 1 242 232 455 3.36e-42 150
Msa0437960 MtrunA17_Chr4g0003441 33.077 260 151 5 1 257 241 480 6.36e-41 147
Msa0437960 MtrunA17_Chr3g0107851 34.568 243 128 4 12 244 265 486 2.62e-37 138
Msa0437960 MtrunA17_Chr2g0293631 34.979 243 129 5 12 245 642 864 5.55e-37 138
Msa0437960 MtrunA17_Chr5g0442191 30.153 262 159 5 1 259 216 456 2.51e-35 132
Msa0437960 MtrunA17_Chr7g0263771 32.283 254 152 2 2 254 264 498 4.42e-35 132
Msa0437960 MtrunA17_Chr3g0121351 33.071 254 139 6 1 243 287 520 1.75e-34 130
Msa0437960 MtrunA17_Chr7g0270131 29.213 267 155 5 1 255 368 612 8.78e-34 129
Msa0437960 MtrunA17_Chr6g0449911 32.530 249 136 7 1 242 300 523 1.67e-33 128
Msa0437960 MtrunA17_Chr7g0271121 32.389 247 143 6 1 244 243 468 2.30e-33 128
Msa0437960 MtrunA17_Chr1g0179761 31.752 274 143 8 1 250 216 469 5.23e-33 125
Msa0437960 MtrunA17_Chr3g0095031 30.350 257 155 5 1 254 225 460 8.62e-33 125
Msa0437960 MtrunA17_Chr1g0193491 30.435 230 138 3 1 228 252 461 8.91e-33 125
Msa0437960 MtrunA17_Chr2g0277821 31.624 234 139 3 10 242 652 865 8.94e-32 123
Msa0437960 MtrunA17_Chr4g0076491 28.077 260 150 4 2 244 427 666 1.32e-30 120
Msa0437960 MtrunA17_Chr1g0176041 29.921 254 145 6 1 242 295 527 2.04e-30 119
Msa0437960 MtrunA17_Chr3g0137901 34.426 183 99 3 76 257 10 172 5.19e-30 110
Msa0437960 MtrunA17_Chr4g0025141 31.390 223 119 5 43 250 14 217 5.20e-30 112
Msa0437960 MtrunA17_Chr4g0063551 32.540 252 138 6 1 242 287 516 6.61e-30 117
Msa0437960 MtrunA17_Chr6g0449741 28.077 260 148 5 2 244 389 626 1.40e-29 117
Msa0437960 MtrunA17_Chr1g0157691 28.137 263 165 5 1 261 292 532 3.05e-27 110
Msa0437960 MtrunA17_Chr1g0200181 29.787 235 142 4 1 234 290 502 4.34e-27 109
Msa0437960 MtrunA17_Chr7g0236841 27.347 245 158 2 12 256 155 379 1.15e-26 107
Msa0437960 MtrunA17_Chr6g0483491 27.347 245 158 2 12 256 155 379 2.16e-26 106
Msa0437960 MtrunA17_Chr4g0040761 28.340 247 155 4 10 254 162 388 3.94e-26 107
Msa0437960 MtrunA17_Chr3g0098121 30.085 236 138 5 12 242 298 511 1.25e-24 102
Msa0437960 MtrunA17_Chr2g0310581 27.801 241 151 3 13 250 199 419 4.68e-23 97.8
Msa0437960 MtrunA17_Chr2g0300291 29.237 236 140 4 12 242 288 501 8.82e-23 97.4
Msa0437960 MtrunA17_Chr2g0309551 23.827 277 151 4 15 250 272 529 3.36e-22 95.5
Msa0437960 MtrunA17_Chr4g0058591 31.214 173 118 1 1 172 338 510 3.93e-22 95.1
Msa0437960 MtrunA17_Chr8g0347151 25.097 259 145 4 11 255 355 578 6.56e-22 94.7
Msa0437960 MtrunA17_Chr5g0409981 28.889 225 137 3 10 230 250 455 6.85e-22 94.4
Msa0437960 MtrunA17_Chr6g0461751 29.167 240 134 6 12 242 289 501 1.57e-21 93.6
Msa0437960 MtrunA17_Chr8g0347161 27.027 259 146 6 11 258 256 482 4.80e-21 92.0
Msa0437960 MtrunA17_Chr8g0347171 25.869 259 149 6 11 258 314 540 1.54e-20 90.9
Msa0437960 MtrunA17_Chr8g0386451 25.385 260 143 7 11 255 442 665 2.76e-20 90.1
Msa0437960 MtrunA17_Chr3g0114081 26.141 241 139 4 10 231 164 384 6.85e-20 89.0
Msa0437960 MtrunA17_Chr4g0034411 27.500 240 149 6 8 243 220 438 1.29e-19 88.2
Msa0437960 MtrunA17_Chr5g0443991 28.947 228 138 5 8 231 220 427 1.37e-19 88.2
Msa0437960 MtrunA17_Chr2g0307471 26.383 235 149 5 10 240 237 451 1.32e-18 85.1
Msa0437960 MtrunA17_Chr6g0475251 27.801 241 128 9 2 228 245 453 1.59e-18 84.7
Msa0437960 MtrunA17_Chr4g0062301 27.004 237 149 5 12 244 246 462 1.97e-18 84.3
Msa0437960 MtrunA17_Chr1g0204391 27.155 232 141 5 2 228 202 410 1.98e-18 84.3
Msa0437960 MtrunA17_Chr4g0025101 27.530 247 102 8 27 253 7 196 1.69e-17 79.0
Msa0437960 MtrunA17_Chr1g0192021 25.483 259 164 6 11 245 178 431 3.26e-17 80.9
Msa0437960 MtrunA17_Chr6g0466611 26.210 248 145 7 12 244 293 517 4.98e-17 80.5
Msa0437960 MtrunA17_Chr7g0236831 22.593 270 141 7 11 231 329 579 1.05e-13 70.9
Msa0437960 MtrunA17_Chr4g0062321 28.313 166 115 3 12 174 66 230 1.08e-13 68.9
Msa0437960 MtrunA17_Chr5g0402301 25.789 190 128 5 83 261 26 213 1.18e-13 68.2
Msa0437960 MtrunA17_Chr2g0301281 28.814 118 64 2 138 255 388 485 3.14e-13 69.3
Msa0437960 MtrunA17_Chr4g0029191 28.814 118 64 2 138 255 391 488 4.48e-13 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0437960 AT3G19760.1 81.992 261 28 1 1 261 167 408 9.27e-158 444
Msa0437960 AT1G51380.1 68.582 261 60 2 1 261 154 392 9.65e-128 368
Msa0437960 AT3G13920.4 62.835 261 78 1 1 261 166 407 1.56e-116 340
Msa0437960 AT3G13920.1 62.835 261 78 1 1 261 171 412 2.28e-116 340
Msa0437960 AT3G13920.3 62.835 261 78 1 1 261 161 402 2.70e-116 339
Msa0437960 AT1G54270.2 61.686 261 81 1 1 261 166 407 6.25e-114 333
Msa0437960 AT1G54270.1 61.686 261 81 1 1 261 171 412 6.87e-114 333
Msa0437960 AT1G72730.1 60.153 261 85 1 1 261 173 414 7.49e-112 328
Msa0437960 AT3G13920.2 64.435 239 66 1 1 239 171 390 6.45e-107 316
Msa0437960 AT3G13920.5 64.435 239 66 1 1 239 175 394 9.91e-107 315
Msa0437960 AT1G51380.2 80.992 121 23 0 1 121 154 274 1.56e-66 208
Msa0437960 AT4G00660.1 34.483 261 150 3 1 261 263 502 1.04e-46 162
Msa0437960 AT4G00660.2 34.483 261 150 3 1 261 263 502 1.04e-46 162
Msa0437960 AT3G61240.2 32.567 261 155 3 1 261 256 495 1.71e-42 151
Msa0437960 AT3G61240.1 32.567 261 155 3 1 261 256 495 1.71e-42 151
Msa0437960 AT5G11170.2 33.077 260 151 5 1 257 97 336 3.51e-42 147
Msa0437960 AT1G55150.1 36.638 232 125 4 1 230 236 447 1.21e-41 149
Msa0437960 AT2G45810.1 32.677 254 149 4 2 254 286 518 1.39e-41 149
Msa0437960 AT1G55150.2 36.638 232 125 4 1 230 261 472 1.49e-41 149
Msa0437960 AT5G11170.1 33.077 260 151 5 1 257 180 419 2.32e-41 147
Msa0437960 AT5G11200.1 33.077 260 151 5 1 257 180 419 2.32e-41 147
Msa0437960 AT3G06480.1 35.019 257 134 6 10 255 580 814 2.16e-39 145
Msa0437960 AT3G53110.1 32.197 264 144 7 5 253 232 475 5.72e-39 142
Msa0437960 AT5G63120.2 35.345 232 130 3 12 242 313 525 6.28e-39 143
Msa0437960 AT1G51380.4 83.750 80 13 0 1 80 154 233 1.16e-38 137
Msa0437960 AT1G51380.3 83.750 80 13 0 1 80 154 233 1.53e-38 137
Msa0437960 AT3G09720.2 34.298 242 139 2 2 242 273 495 7.81e-37 137
Msa0437960 AT3G09720.1 34.298 242 139 2 2 242 273 495 7.81e-37 137
Msa0437960 AT3G01540.1 33.206 262 146 5 1 253 294 535 9.23e-36 134
Msa0437960 AT3G01540.4 33.206 262 146 5 1 253 294 535 9.56e-36 134
Msa0437960 AT3G01540.2 33.206 262 146 5 1 253 294 535 9.56e-36 134
Msa0437960 AT3G01540.3 33.206 262 146 5 1 253 294 535 9.56e-36 134
Msa0437960 AT1G20920.4 32.479 234 137 3 10 242 678 891 2.76e-35 134
Msa0437960 AT1G20920.6 32.479 234 137 3 10 242 678 891 2.76e-35 134
Msa0437960 AT1G20920.3 32.479 234 137 3 10 242 678 891 2.76e-35 134
Msa0437960 AT1G20920.7 32.479 234 137 3 10 242 678 891 2.76e-35 134
Msa0437960 AT1G20920.5 32.479 234 137 3 10 242 678 891 2.76e-35 134
Msa0437960 AT1G20920.1 32.479 234 137 3 10 242 678 891 2.76e-35 134
Msa0437960 AT5G26742.3 31.321 265 157 6 1 261 149 392 3.88e-35 133
Msa0437960 AT5G26742.1 31.321 265 157 6 1 261 242 485 6.05e-35 132
Msa0437960 AT5G26742.2 31.321 265 157 6 1 261 242 485 6.06e-35 132
Msa0437960 AT5G14610.7 33.466 251 138 5 12 253 177 407 7.34e-35 131
Msa0437960 AT5G14610.3 33.466 251 138 5 12 253 177 407 7.34e-35 131
Msa0437960 AT3G22330.1 30.350 257 155 5 1 254 240 475 2.12e-34 130
Msa0437960 AT3G22310.2 30.078 256 157 3 1 254 252 487 2.18e-34 130
Msa0437960 AT5G14610.2 33.466 251 138 5 12 253 308 538 2.31e-34 130
Msa0437960 AT5G14610.1 33.466 251 138 5 12 253 376 606 2.32e-34 131
Msa0437960 AT3G22310.1 30.078 256 157 3 1 254 252 487 2.38e-34 130
Msa0437960 AT5G14610.6 33.466 251 138 5 12 253 308 538 2.44e-34 130
Msa0437960 AT5G14610.5 33.466 251 138 5 12 253 316 546 2.83e-34 130
Msa0437960 AT2G47330.1 29.434 265 160 4 1 260 365 607 2.89e-34 130
Msa0437960 AT3G58510.1 32.806 253 141 5 1 244 293 525 4.26e-34 130
Msa0437960 AT3G58510.3 32.806 253 141 5 1 244 293 525 4.26e-34 130
Msa0437960 AT3G58510.2 32.806 253 141 5 1 244 293 525 4.26e-34 130
Msa0437960 AT5G11200.3 28.239 301 152 5 1 257 180 460 7.68e-34 127
Msa0437960 AT1G20920.2 32.245 245 137 4 7 242 329 553 7.82e-34 129
Msa0437960 AT2G42520.2 31.890 254 144 6 1 244 301 535 6.66e-32 124
Msa0437960 AT2G42520.1 31.890 254 144 6 1 244 301 535 6.66e-32 124
Msa0437960 AT2G42520.3 31.890 254 144 6 1 244 301 535 6.66e-32 124
Msa0437960 AT2G33730.1 29.231 260 147 3 2 244 454 693 9.93e-32 123
Msa0437960 AT3G58570.1 29.528 254 150 5 1 244 288 522 4.46e-30 118
Msa0437960 AT1G28180.1 31.020 245 144 5 2 244 114 335 6.88e-29 112
Msa0437960 AT4G33370.1 30.544 239 143 4 1 238 243 459 1.34e-28 114
Msa0437960 AT5G51280.1 29.412 272 159 7 1 261 292 541 1.26e-27 111
Msa0437960 AT5G11200.2 32.990 194 108 4 66 257 305 478 3.28e-27 109
Msa0437960 AT5G60990.1 27.165 254 165 2 1 254 154 387 4.92e-27 108
Msa0437960 AT1G77030.1 28.340 247 155 5 10 254 172 398 5.39e-27 110
Msa0437960 AT3G09620.2 28.846 260 127 6 7 257 535 745 1.25e-25 106
Msa0437960 AT3G09620.1 28.846 260 127 6 7 257 534 744 1.30e-25 106
Msa0437960 AT3G06480.2 36.571 175 108 3 12 184 582 755 2.87e-25 105
Msa0437960 AT5G08610.1 27.881 269 135 7 11 260 537 765 4.27e-25 104
Msa0437960 AT3G02065.1 28.862 246 149 6 1 242 113 336 9.73e-25 101
Msa0437960 AT5G63630.1 24.906 265 150 4 10 260 208 437 1.72e-24 102
Msa0437960 AT1G16280.1 29.461 241 135 7 13 244 205 419 1.88e-24 102
Msa0437960 AT3G02065.3 28.862 246 149 6 1 242 250 473 5.21e-24 100
Msa0437960 AT3G02065.2 28.862 246 149 6 1 242 250 473 5.21e-24 100
Msa0437960 AT4G16630.1 28.936 235 146 2 12 244 314 529 5.66e-24 101
Msa0437960 AT1G12770.2 24.150 294 157 4 3 251 259 531 8.34e-24 100
Msa0437960 AT1G12770.1 24.150 294 157 4 3 251 259 531 8.34e-24 100
Msa0437960 AT5G63630.2 24.906 265 150 4 10 260 402 631 1.19e-23 100
Msa0437960 AT5G08620.1 25.379 264 148 4 11 260 235 463 1.75e-23 99.8
Msa0437960 AT5G63120.1 33.333 162 107 1 12 172 313 474 4.94e-23 97.8
Msa0437960 AT5G63120.3 33.333 162 107 1 12 172 313 474 5.24e-23 97.8
Msa0437960 AT5G63120.4 33.333 162 107 1 12 172 313 474 5.24e-23 97.8
Msa0437960 AT5G63120.5 33.333 162 107 1 12 172 313 474 5.24e-23 97.8
Msa0437960 AT1G31970.1 26.119 268 168 5 1 257 255 503 2.11e-22 96.3
Msa0437960 AT5G05450.1 27.848 237 136 4 10 231 166 382 2.22e-22 96.3
Msa0437960 AT5G14610.4 34.337 166 106 3 12 175 316 480 4.34e-22 95.5
Msa0437960 AT3G18600.1 28.632 234 144 5 10 240 235 448 2.01e-21 93.6
Msa0437960 AT5G62190.1 26.740 273 155 6 2 261 239 479 3.17e-21 93.2
Msa0437960 AT2G07750.1 26.236 263 137 6 11 255 531 754 1.12e-20 91.7
Msa0437960 AT1G63250.1 26.538 260 140 7 11 255 484 707 1.34e-20 91.3
Msa0437960 AT1G71370.1 27.193 228 140 4 10 231 166 373 3.93e-19 87.0
Msa0437960 AT5G54910.1 27.917 240 143 6 12 244 219 435 1.47e-18 85.5
Msa0437960 AT5G65900.1 27.778 234 147 3 10 240 300 514 4.28e-18 84.0
Msa0437960 AT4G34910.1 26.792 265 168 6 6 247 195 456 1.36e-16 79.7
Msa0437960 AT4G09730.1 25.794 252 141 8 12 244 264 488 1.34e-15 76.6
Msa0437960 AT2G40700.1 32.407 108 54 1 138 245 380 468 1.92e-12 67.4

Find 110 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAAACTGAAAATGTTATTT+TGG 0.151334 3_3:+1957523 Msa0437960:five_prime_UTR
TGTTGCTGATCTTATATAAA+AGG 0.182863 3_3:+1960091 Msa0437960:exon
CTCTTCATTGTTGTTGTAGT+TGG 0.238396 3_3:+1956766 Msa0437960:five_prime_UTR
ATGTACAGCTCTCGATTATT+TGG 0.242192 3_3:-1959826 None:intergenic
TACGCTACCTCATGAAATTT+TGG 0.254057 3_3:+1958388 Msa0437960:CDS
TATGGTGGCTCACCTTGATT+TGG 0.258292 3_3:+1957048 Msa0437960:five_prime_UTR
TCAAAATCCAAAATTGGATT+TGG 0.296254 3_3:+1956596 None:intergenic
GGTCAGTTGGGCTGTTCTTT+TGG 0.301651 3_3:+1957202 Msa0437960:five_prime_UTR
GAGACGCACGAGTTAAATAT+TGG 0.302996 3_3:-1956688 None:intergenic
AAGAGAAAGAGATGCAATTA+TGG 0.315960 3_3:+1958861 Msa0437960:CDS
GTCAAATTTATGCTAGGAAT+TGG 0.320658 3_3:+1960146 Msa0437960:three_prime_UTR
ATTGGCCGTTCTGGACGTTT+TGG 0.323765 3_3:+1959856 Msa0437960:CDS
TATTGATAACGACTGATGTT+TGG 0.325693 3_3:+1958911 Msa0437960:CDS
ATATCTCCCTCCGGATCTTC+AGG 0.332541 3_3:+1957858 Msa0437960:CDS
GACTTATGAAATTTATTGAT+AGG 0.338371 3_3:-1957295 None:intergenic
TTGTAATTTGAACAGGTTGC+AGG 0.352767 3_3:+1957466 Msa0437960:intron
TAGTTGGCACTTTGACTTCT+CGG 0.353299 3_3:+1956782 Msa0437960:five_prime_UTR
AAGCATACAATAAGCTATAT+AGG 0.357388 3_3:-1956872 None:intergenic
GATTTGGGCATGTTGAACTA+TGG 0.358630 3_3:+1957064 Msa0437960:five_prime_UTR
TGTTGTCACAAATAGAAATA+AGG 0.360677 3_3:-1956828 None:intergenic
CCACCTTGCATGTAAGATAA+TGG 0.364408 3_3:-1960336 None:intergenic
ATTCATCGGATTGGCCGTTC+TGG 0.374179 3_3:+1959847 Msa0437960:CDS
ATTGCATCTCTTTCTCTTTG+AGG 0.376417 3_3:-1958856 None:intergenic
ATGGTGGCTCACCTTGATTT+GGG 0.377270 3_3:+1957049 Msa0437960:five_prime_UTR
CAAAAGATAAAAGCACAAAC+AGG 0.390044 3_3:-1959654 None:intergenic
ATTGATAACGACTGATGTTT+GGG 0.390146 3_3:+1958912 Msa0437960:CDS
TGTGTCTCCGACAAGGGAAT+TGG 0.408057 3_3:+1957496 Msa0437960:five_prime_UTR
CTTATGAAACTCTTGACATA+TGG 0.410214 3_3:+1960208 Msa0437960:three_prime_UTR
TCAGAGGTCCCTCACTCATC+TGG 0.412635 3_3:+1957234 Msa0437960:five_prime_UTR
AGTATACCTGTCATGGTCAT+AGG 0.424071 3_3:-1957363 None:intergenic
ATGTTGCCAAAGCGGTCTTA+TGG 0.436409 3_3:+1957030 Msa0437960:five_prime_UTR
CATGTAGTGTCGGGGACTCC+TGG 0.441130 3_3:+1957635 Msa0437960:five_prime_UTR
TGTGAGGCCAATTCCCTTGT+CGG 0.444766 3_3:-1957503 None:intergenic
CCTCATGATTACAGGGCATC+AGG 0.461625 3_3:+1958543 Msa0437960:intron
AAATCCAAAATTGGATTTGG+AGG 0.462538 3_3:+1956599 None:intergenic
AATAAATTTCATAAGTCAAG+AGG 0.463570 3_3:+1957301 Msa0437960:five_prime_UTR
CACGGAGTTCATGTAGTGTC+GGG 0.464753 3_3:+1957626 Msa0437960:five_prime_UTR
ACGACTGATGTTTGGGCTCG+TGG 0.476458 3_3:+1958919 Msa0437960:CDS
ACAGCCCAACTGACCATCAC+AGG 0.477996 3_3:-1957194 None:intergenic
CGAGCACATGCATGCATTGG+AGG 0.480977 3_3:+1957569 Msa0437960:five_prime_UTR
GTTGCTGATCTTATATAAAA+GGG 0.485003 3_3:+1960092 Msa0437960:exon
ATAAATTGTGACCATTCCAT+TGG 0.492230 3_3:+1957262 Msa0437960:five_prime_UTR
AGCTATCAAGTTGCTTGTGC+TGG 0.499944 3_3:+1957700 Msa0437960:CDS
ATGCCCTGTGATGGTCAGTT+GGG 0.505958 3_3:+1957190 Msa0437960:five_prime_UTR
GTAAGGTGAACCTGAAGATC+CGG 0.506742 3_3:-1957868 None:intergenic
TCGACTGAACCCAGGGATGA+AGG 0.510337 3_3:+1960252 Msa0437960:three_prime_UTR
TGCATTGGAGGCAAAAGCGT+TGG 0.520539 3_3:+1957581 Msa0437960:five_prime_UTR
ATCGAGAGCTGTACATTCAT+CGG 0.523237 3_3:+1959833 Msa0437960:CDS
GAGCCACCATAAGACCGCTT+TGG 0.523873 3_3:-1957036 None:intergenic
AAAAGTAAACCTTCATCCCT+GGG 0.526364 3_3:-1960261 None:intergenic
AAAATTGGATTTGGAGGGAA+GGG 0.528315 3_3:+1956605 None:intergenic
GTGTTTGTCAAATTTATGCT+AGG 0.528416 3_3:+1960140 Msa0437960:three_prime_UTR
AATGCCCTGTGATGGTCAGT+TGG 0.530582 3_3:+1957189 Msa0437960:five_prime_UTR
TAAATTGTGACCATTCCATT+GGG 0.531754 3_3:+1957263 Msa0437960:five_prime_UTR
GAGTCCTTGACATGATCAAA+AGG 0.531974 3_3:+1957660 Msa0437960:exon
TTATGTTGATGTTGAAAGGG+AGG 0.536096 3_3:+1958571 Msa0437960:CDS
TGAGTGAGGGACCTCTGAGC+AGG 0.537060 3_3:-1957229 None:intergenic
AATCCAAAATTGGATTTGGA+GGG 0.538233 3_3:+1956600 None:intergenic
TTTAATTGTGTCTCCGACAA+GGG 0.538538 3_3:+1957490 Msa0437960:five_prime_UTR
CTTTAATTGTGTCTCCGACA+AGG 0.539027 3_3:+1957489 Msa0437960:five_prime_UTR
AGTTCAACATGCCCAAATCA+AGG 0.542457 3_3:-1957060 None:intergenic
GAGCTGTACATTCATCGGAT+TGG 0.543246 3_3:+1959838 Msa0437960:CDS
TGTCCATTATCTTACATGCA+AGG 0.543686 3_3:+1960333 Msa0437960:three_prime_UTR
ATACGAGCACATGCATGCAT+TGG 0.549970 3_3:+1957566 Msa0437960:five_prime_UTR
TTGTTTGCTCGACTGAACCC+AGG 0.550223 3_3:+1960244 Msa0437960:three_prime_UTR
AAGGGCAATGCAGTATATGT+TGG 0.553284 3_3:+1960110 Msa0437960:three_prime_UTR
TCGTGGACTTGATGTACAGC+AGG 0.556397 3_3:+1958936 Msa0437960:CDS
ATGGAGCCTATGACCATGAC+AGG 0.559032 3_3:+1957357 Msa0437960:five_prime_UTR
ATCATGTCAAGGACTCGGCC+AGG 0.564010 3_3:-1957653 None:intergenic
CATAGACAGTATACCTGTCA+TGG 0.565778 3_3:-1957370 None:intergenic
GATAGGTTCTTCTGACCCAA+TGG 0.565909 3_3:-1957278 None:intergenic
AAAATTAATCTCAGCCGTAT+CGG 0.568278 3_3:-1960288 None:intergenic
ATAAGATCAGCAACATTCAT+CGG 0.575456 3_3:-1960083 None:intergenic
ACGTGATGAATTGACATTGG+AGG 0.580038 3_3:+1958457 Msa0437960:CDS
TGTTTGCTCGACTGAACCCA+GGG 0.581642 3_3:+1960245 Msa0437960:three_prime_UTR
ATTATGGATGAATTTCGTGC+TGG 0.582575 3_3:+1958877 Msa0437960:CDS
CTACAACAACAATGAAGAGA+GGG 0.584294 3_3:-1956762 None:intergenic
AGACCGCTTTGGCAACATCA+TGG 0.586297 3_3:-1957025 None:intergenic
AAAACGTGATGAATTGACAT+TGG 0.590799 3_3:+1958454 Msa0437960:CDS
ACACGGAGTTCATGTAGTGT+CGG 0.591877 3_3:+1957625 Msa0437960:five_prime_UTR
TTGCCAAAGCGGTCTTATGG+TGG 0.596063 3_3:+1957033 Msa0437960:five_prime_UTR
CAAAATTGGATTTGGAGGGA+AGG 0.598555 3_3:+1956604 None:intergenic
TTGATGTTGAAAGGGAGGAA+TGG 0.599804 3_3:+1958576 Msa0437960:CDS
TATATTCACCAGATGAGTGA+GGG 0.601227 3_3:-1957242 None:intergenic
AAAAGATAAAAGCACAAACA+GGG 0.603664 3_3:-1959653 None:intergenic
ATAAATTTCATAAGTCAAGA+GGG 0.604623 3_3:+1957302 Msa0437960:five_prime_UTR
TTCACTATCTCATCAATGCA+CGG 0.607282 3_3:+1958826 Msa0437960:CDS
TATTTGAGAATGCCCTGTGA+TGG 0.609723 3_3:+1957181 Msa0437960:five_prime_UTR
GTCATCTCCAAAATTTCATG+AGG 0.612581 3_3:-1958395 None:intergenic
CCACCATGATGTTGCCAAAG+CGG 0.614786 3_3:+1957022 Msa0437960:five_prime_UTR
ATTCTGTAACACCAAGCGAA+AGG 0.615167 3_3:+1958655 Msa0437960:CDS
TGTGTATAGATATCTCCCTC+CGG 0.617507 3_3:+1957849 Msa0437960:CDS
TTATATTCACCAGATGAGTG+AGG 0.627176 3_3:-1957243 None:intergenic
GAATATAACAGCTTGAGTGA+TGG 0.627409 3_3:-1958636 None:intergenic
GTTCTTCTGACCCAATGGAA+TGG 0.630104 3_3:-1957273 None:intergenic
TTCGTCCAAAACGTCCAGAA+CGG 0.636927 3_3:-1959861 None:intergenic
CCATTATCTTACATGCAAGG+TGG 0.645222 3_3:+1960336 Msa0437960:three_prime_UTR
AGGTGAACCTGAAGATCCGG+AGG 0.649252 3_3:-1957865 None:intergenic
CAGCCCAACTGACCATCACA+GGG 0.653439 3_3:-1957193 None:intergenic
ACTACAACAACAATGAAGAG+AGG 0.661536 3_3:-1956763 None:intergenic
TACAACAACAATGAAGAGAG+GGG 0.676280 3_3:-1956761 None:intergenic
AAAATGATTAAAGATAGTGA+CGG 0.682155 3_3:-1956735 None:intergenic
AAAGCGTTGGAGAAGACACA+AGG 0.685686 3_3:+1957594 Msa0437960:five_prime_UTR
ACGGAGTTCATGTAGTGTCG+GGG 0.690010 3_3:+1957627 Msa0437960:five_prime_UTR
GACACAAGGAAACTTGAACA+CGG 0.692105 3_3:+1957608 Msa0437960:five_prime_UTR
TCTGATGAAATGCTGAGCAG+AGG 0.698342 3_3:+1957805 Msa0437960:CDS
GGTGAACCTGAAGATCCGGA+GGG 0.711398 3_3:-1957864 None:intergenic
CCGCTTTGGCAACATCATGG+TGG 0.713927 3_3:-1957022 None:intergenic
AGTTTATGACAGATCCTGTG+AGG 0.717164 3_3:+1958423 Msa0437960:CDS
TGATTTCTGCAAAACCACCG+TGG 0.765068 3_3:-1956992 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATGTACTTATTTTAAAACA+TGG + chr3_3:1957138-1957157 Msa0437960:five_prime_UTR 15.0%
!!! ATATTTTTCTTTTTTATTGC+AGG + chr3_3:1957777-1957796 Msa0437960:intron 15.0%
!!! TTGTTTAATTTTTAATGTGT+AGG + chr3_3:1958349-1958368 Msa0437960:intron 15.0%
!! AAGGTAAATGAAAATTATAA+AGG + chr3_3:1958674-1958693 Msa0437960:intron 15.0%
!!! TAATATTTGTTTGTTATTAG+AGG + chr3_3:1959617-1959636 Msa0437960:intron 15.0%
!! TAAGAAATGTAACAATTAAA+TGG + chr3_3:1959730-1959749 Msa0437960:intron 15.0%
!! AAAATGATTAAAGATAGTGA+CGG - chr3_3:1956738-1956757 None:intergenic 20.0%
!! GACTTATGAAATTTATTGAT+AGG - chr3_3:1957298-1957317 None:intergenic 20.0%
!! AATAAATTTCATAAGTCAAG+AGG + chr3_3:1957301-1957320 Msa0437960:five_prime_UTR 20.0%
!! ATAAATTTCATAAGTCAAGA+GGG + chr3_3:1957302-1957321 Msa0437960:five_prime_UTR 20.0%
!! TCAAATTACAAAATTTCAGT+CGG - chr3_3:1957457-1957476 None:intergenic 20.0%
!!! TGAAATTTTGTAATTTGAAC+AGG + chr3_3:1957459-1957478 Msa0437960:intron 20.0%
!!! ACAAACTGAAAATGTTATTT+TGG + chr3_3:1957523-1957542 Msa0437960:five_prime_UTR 20.0%
!!! AAAATGTTATTTTGGCAATT+GGG + chr3_3:1957531-1957550 Msa0437960:five_prime_UTR 20.0%
!! AATTTGTCTGAATTAGAAAT+TGG - chr3_3:1957989-1958008 None:intergenic 20.0%
!! TTTCTAATTCAGACAAATTT+AGG + chr3_3:1957990-1958009 Msa0437960:intron 20.0%
!! ACAAATTTAGGTGATAAATA+GGG + chr3_3:1958002-1958021 Msa0437960:intron 20.0%
!!! AATTTTATGTTGATGTTGAA+AGG + chr3_3:1958567-1958586 Msa0437960:CDS 20.0%
!!! ATTTTATGTTGATGTTGAAA+GGG + chr3_3:1958568-1958587 Msa0437960:CDS 20.0%
!! GAAAATTATAAAGGTTCTTT+AGG + chr3_3:1958683-1958702 Msa0437960:intron 20.0%
!!! CTAGTCTTTATATTTACATA+TGG + chr3_3:1958737-1958756 Msa0437960:intron 20.0%
!! TTATATTTACATATGGTGAT+TGG + chr3_3:1958744-1958763 Msa0437960:intron 20.0%
!!! ATTGGTTATATATATCCTTT+TGG + chr3_3:1958762-1958781 Msa0437960:intron 20.0%
!! TATTATTATTACATACAGCA+AGG + chr3_3:1959491-1959510 Msa0437960:intron 20.0%
!!! TATTACTTGTTTCTTATAGT+TGG + chr3_3:1959954-1959973 Msa0437960:intron 20.0%
!!! ATTACTTGTTTCTTATAGTT+GGG + chr3_3:1959955-1959974 Msa0437960:intron 20.0%
!!! TTGCTATAAATTTTGTGAAA+AGG + chr3_3:1960000-1960019 Msa0437960:CDS 20.0%
!!! TGCTATAAATTTTGTGAAAA+GGG + chr3_3:1960001-1960020 Msa0437960:CDS 20.0%
!! AAAACTAGAGGTAATTTTGT+AGG - chr3_3:1956658-1956677 None:intergenic 25.0%
!!! GGATTTTAACATAAAACTAG+AGG - chr3_3:1956670-1956689 None:intergenic 25.0%
! TGTTGTCACAAATAGAAATA+AGG - chr3_3:1956831-1956850 None:intergenic 25.0%
! AAGCATACAATAAGCTATAT+AGG - chr3_3:1956875-1956894 None:intergenic 25.0%
!! AATTTTTCTCTGAATGCTAA+TGG + chr3_3:1957338-1957357 Msa0437960:five_prime_UTR 25.0%
!! AATAACATTTTCAGTTTGTG+AGG - chr3_3:1957522-1957541 None:intergenic 25.0%
!!! GAAAATGTTATTTTGGCAAT+TGG + chr3_3:1957530-1957549 Msa0437960:five_prime_UTR 25.0%
! GACAAATTTAGGTGATAAAT+AGG + chr3_3:1958001-1958020 Msa0437960:intron 25.0%
! ATGAATATGTTGTCTTCATT+TGG + chr3_3:1958152-1958171 Msa0437960:intron 25.0%
! ACCTCAATTTATAACTTAGT+TGG + chr3_3:1958212-1958231 Msa0437960:intron 25.0%
! TCCAACTAAGTTATAAATTG+AGG - chr3_3:1958216-1958235 None:intergenic 25.0%
! AGTTAAATATCAGAAAACAC+AGG - chr3_3:1958502-1958521 None:intergenic 25.0%
!! TGTGTTTTCTGATATTTAAC+TGG + chr3_3:1958501-1958520 Msa0437960:intron 25.0%
!!! TATATATATCCTTTTGGAAC+AGG + chr3_3:1958768-1958787 Msa0437960:intron 25.0%
! AGTTGTTAGTAGTTTATTCT+TGG + chr3_3:1958961-1958980 Msa0437960:intron 25.0%
! AAATAAAAAAACACATGGAC+TGG - chr3_3:1959011-1959030 None:intergenic 25.0%
!!! CTGAATTCATCATATTTTAG+AGG - chr3_3:1959037-1959056 None:intergenic 25.0%
!!! ATACTGATTCAAAGTAATCA+TGG - chr3_3:1959112-1959131 None:intergenic 25.0%
!! AATTTTAAACCTACTGCAAA+AGG - chr3_3:1959189-1959208 None:intergenic 25.0%
! TGACTACATTAAAATTGCTT+AGG - chr3_3:1959323-1959342 None:intergenic 25.0%
! TGACTACATTAAAATTGCTT+AGG - chr3_3:1959323-1959342 None:intergenic 25.0%
! CAAGTCAACATCAATATTTA+TGG - chr3_3:1959551-1959570 None:intergenic 25.0%
!! AAAAGATAAAAGCACAAACA+GGG - chr3_3:1959656-1959675 None:intergenic 25.0%
!! TGTTTGTGCTTTTATCTTTT+GGG + chr3_3:1959656-1959675 Msa0437960:CDS 25.0%
! GAAATGTAACAATTAAATGG+AGG + chr3_3:1959733-1959752 Msa0437960:intron 25.0%
! TGTTGCTGATCTTATATAAA+AGG + chr3_3:1960091-1960110 Msa0437960:exon 25.0%
! GTTGCTGATCTTATATAAAA+GGG + chr3_3:1960092-1960111 Msa0437960:exon 25.0%
!! CTGAGATTAATTTTGTAAAC+TGG + chr3_3:1960297-1960316 Msa0437960:three_prime_UTR 25.0%
ATAGGAGATGTTGTCAAAAA+AGG - chr3_3:1956857-1956876 None:intergenic 30.0%
ATAAATTGTGACCATTCCAT+TGG + chr3_3:1957262-1957281 Msa0437960:five_prime_UTR 30.0%
TAAATTGTGACCATTCCATT+GGG + chr3_3:1957263-1957282 Msa0437960:five_prime_UTR 30.0%
! AGGTATACTGTCTATGATTT+TGG + chr3_3:1957377-1957396 Msa0437960:intron 30.0%
!! GTCAATTAGTTTGCAATTGT+TGG - chr3_3:1957419-1957438 None:intergenic 30.0%
! TTTCTTTCTTTTTCTCGTCA+AGG + chr3_3:1957746-1957765 Msa0437960:intron 30.0%
ATAAAATGACAGAGAAGGTA+AGG - chr3_3:1957888-1957907 None:intergenic 30.0%
!!! ACCTTCTCTGTCATTTTATT+TGG + chr3_3:1957889-1957908 Msa0437960:intron 30.0%
TCCAAATAAAATGACAGAGA+AGG - chr3_3:1957893-1957912 None:intergenic 30.0%
!!! CTCTGTCATTTTATTTGGAA+TGG + chr3_3:1957894-1957913 Msa0437960:intron 30.0%
CTACTTAGCAAAGTTGTAAT+TGG - chr3_3:1957946-1957965 None:intergenic 30.0%
ACTAAAACCAATCATCAAAC+AGG - chr3_3:1958048-1958067 None:intergenic 30.0%
AAAATCTGTATCAGCTATAG+AGG - chr3_3:1958131-1958150 None:intergenic 30.0%
AGGTAAAGTTTCAGATGATT+GGG - chr3_3:1958196-1958215 None:intergenic 30.0%
ACTTAGTTGGATGTATCTTT+AGG + chr3_3:1958225-1958244 Msa0437960:intron 30.0%
CTTAGTTGGATGTATCTTTA+GGG + chr3_3:1958226-1958245 Msa0437960:intron 30.0%
! TTACTCTTGTTGTAAACTTG+TGG + chr3_3:1958282-1958301 Msa0437960:intron 30.0%
ATTCAGAGACTACATAAGTT+TGG - chr3_3:1958330-1958349 None:intergenic 30.0%
! TCAATTCATCACGTTTTACA+AGG - chr3_3:1958451-1958470 None:intergenic 30.0%
AAAACGTGATGAATTGACAT+TGG + chr3_3:1958454-1958473 Msa0437960:CDS 30.0%
! ATTTTCATTTACCTTTCGCT+TGG - chr3_3:1958669-1958688 None:intergenic 30.0%
! TATAAAGGTTCTTTAGGAAC+AGG + chr3_3:1958689-1958708 Msa0437960:intron 30.0%
AAGAGAAAGAGATGCAATTA+TGG + chr3_3:1958861-1958880 Msa0437960:CDS 30.0%
!! TATTGATAACGACTGATGTT+TGG + chr3_3:1958911-1958930 Msa0437960:CDS 30.0%
!! ATTGATAACGACTGATGTTT+GGG + chr3_3:1958912-1958931 Msa0437960:CDS 30.0%
GGCACAAATAAAAAAACACA+TGG - chr3_3:1959016-1959035 None:intergenic 30.0%
ATCAAATTCCGTGTAAAACT+GGG - chr3_3:1959217-1959236 None:intergenic 30.0%
! CAAAAGATAAAAGCACAAAC+AGG - chr3_3:1959657-1959676 None:intergenic 30.0%
! CTGTTTGTGCTTTTATCTTT+TGG + chr3_3:1959655-1959674 Msa0437960:CDS 30.0%
! TCTGAAGTAAGTAGTTAGTA+TGG + chr3_3:1959920-1959939 Msa0437960:intron 30.0%
ATAAGATCAGCAACATTCAT+CGG - chr3_3:1960086-1960105 None:intergenic 30.0%
GTGTTTGTCAAATTTATGCT+AGG + chr3_3:1960140-1960159 Msa0437960:three_prime_UTR 30.0%
GTCAAATTTATGCTAGGAAT+TGG + chr3_3:1960146-1960165 Msa0437960:three_prime_UTR 30.0%
CTTATGAAACTCTTGACATA+TGG + chr3_3:1960208-1960227 Msa0437960:three_prime_UTR 30.0%
!!! GTTTACTTTTTTTGCCGATA+CGG + chr3_3:1960274-1960293 Msa0437960:three_prime_UTR 30.0%
AAAATTAATCTCAGCCGTAT+CGG - chr3_3:1960291-1960310 None:intergenic 30.0%
TACAACAACAATGAAGAGAG+GGG - chr3_3:1956764-1956783 None:intergenic 35.0%
CTACAACAACAATGAAGAGA+GGG - chr3_3:1956765-1956784 None:intergenic 35.0%
ACTACAACAACAATGAAGAG+AGG - chr3_3:1956766-1956785 None:intergenic 35.0%
! CTCTTCATTGTTGTTGTAGT+TGG + chr3_3:1956766-1956785 Msa0437960:five_prime_UTR 35.0%
! AAAGTGCATGTTTTGTACCA+CGG + chr3_3:1956975-1956994 Msa0437960:five_prime_UTR 35.0%
TATATTCACCAGATGAGTGA+GGG - chr3_3:1957245-1957264 None:intergenic 35.0%
TTATATTCACCAGATGAGTG+AGG - chr3_3:1957246-1957265 None:intergenic 35.0%
TTGTAATTTGAACAGGTTGC+AGG + chr3_3:1957466-1957485 Msa0437960:intron 35.0%
TTTAATTGTGTCTCCGACAA+GGG + chr3_3:1957490-1957509 Msa0437960:five_prime_UTR 35.0%
! TTTTGATCATGTCAAGGACT+CGG - chr3_3:1957661-1957680 None:intergenic 35.0%
! TTCTCCTTTTGATCATGTCA+AGG - chr3_3:1957667-1957686 None:intergenic 35.0%
TTTGCTAAGTAGACTTCACA+AGG + chr3_3:1957954-1957973 Msa0437960:intron 35.0%
GGTGATAAATAGGGTTAAAG+AGG + chr3_3:1958011-1958030 Msa0437960:intron 35.0%
TAACAACATAATTTCCCCTC+AGG - chr3_3:1958103-1958122 None:intergenic 35.0%
GAGGTAAAGTTTCAGATGAT+TGG - chr3_3:1958197-1958216 None:intergenic 35.0%
! TACGCTACCTCATGAAATTT+TGG + chr3_3:1958388-1958407 Msa0437960:CDS 35.0%
GTCATCTCCAAAATTTCATG+AGG - chr3_3:1958398-1958417 None:intergenic 35.0%
TTATGTTGATGTTGAAAGGG+AGG + chr3_3:1958571-1958590 Msa0437960:CDS 35.0%
GAATATAACAGCTTGAGTGA+TGG - chr3_3:1958639-1958658 None:intergenic 35.0%
!!! ATATATCCTTTTGGAACAGG+TGG + chr3_3:1958771-1958790 Msa0437960:intron 35.0%
TTCACTATCTCATCAATGCA+CGG + chr3_3:1958826-1958845 Msa0437960:CDS 35.0%
ATTGCATCTCTTTCTCTTTG+AGG - chr3_3:1958859-1958878 None:intergenic 35.0%
ATTATGGATGAATTTCGTGC+TGG + chr3_3:1958877-1958896 Msa0437960:CDS 35.0%
!!! AAAAACTAGCCTTTTGCAGT+AGG + chr3_3:1959177-1959196 Msa0437960:intron 35.0%
GATCAAATTCCGTGTAAAAC+TGG - chr3_3:1959218-1959237 None:intergenic 35.0%
! GTCAGCAATTACTGTGTTTT+GGG - chr3_3:1959452-1959471 None:intergenic 35.0%
ATATCTTCCTACTTCTGTTC+AGG - chr3_3:1959474-1959493 None:intergenic 35.0%
!! TGTGCTTTTATCTTTTGGGT+CGG + chr3_3:1959660-1959679 Msa0437960:CDS 35.0%
TGATAACAGAAACAAGTGCA+CGG - chr3_3:1959778-1959797 None:intergenic 35.0%
ATGTACAGCTCTCGATTATT+TGG - chr3_3:1959829-1959848 None:intergenic 35.0%
AAAAGTAAACCTTCATCCCT+GGG - chr3_3:1960264-1960283 None:intergenic 35.0%
AAAAAGTAAACCTTCATCCC+TGG - chr3_3:1960265-1960284 None:intergenic 35.0%
TGTCCATTATCTTACATGCA+AGG + chr3_3:1960333-1960352 Msa0437960:three_prime_UTR 35.0%
GAGACGCACGAGTTAAATAT+TGG - chr3_3:1956691-1956710 None:intergenic 40.0%
! TAGTTGGCACTTTGACTTCT+CGG + chr3_3:1956782-1956801 Msa0437960:five_prime_UTR 40.0%
AGTTCAACATGCCCAAATCA+AGG - chr3_3:1957063-1957082 None:intergenic 40.0%
GATTTGGGCATGTTGAACTA+TGG + chr3_3:1957064-1957083 Msa0437960:five_prime_UTR 40.0%
TATTTGAGAATGCCCTGTGA+TGG + chr3_3:1957181-1957200 Msa0437960:five_prime_UTR 40.0%
AGTATACCTGTCATGGTCAT+AGG - chr3_3:1957366-1957385 None:intergenic 40.0%
CATAGACAGTATACCTGTCA+TGG - chr3_3:1957373-1957392 None:intergenic 40.0%
CTTTAATTGTGTCTCCGACA+AGG + chr3_3:1957489-1957508 Msa0437960:five_prime_UTR 40.0%
GACACAAGGAAACTTGAACA+CGG + chr3_3:1957608-1957627 Msa0437960:five_prime_UTR 40.0%
GAGTCCTTGACATGATCAAA+AGG + chr3_3:1957660-1957679 Msa0437960:exon 40.0%
TGTGTATAGATATCTCCCTC+CGG + chr3_3:1957849-1957868 Msa0437960:CDS 40.0%
! TGATGTGCCTGTTTGATGAT+TGG + chr3_3:1958038-1958057 Msa0437960:intron 40.0%
CTCATTTCCACTCCTTCATA+TGG - chr3_3:1958080-1958099 None:intergenic 40.0%
AGTTTGGAAAGAATGCAGAC+AGG - chr3_3:1958314-1958333 None:intergenic 40.0%
AGTTTATGACAGATCCTGTG+AGG + chr3_3:1958423-1958442 Msa0437960:CDS 40.0%
ACGTGATGAATTGACATTGG+AGG + chr3_3:1958457-1958476 Msa0437960:CDS 40.0%
TTGATGTTGAAAGGGAGGAA+TGG + chr3_3:1958576-1958595 Msa0437960:CDS 40.0%
ATTCTGTAACACCAAGCGAA+AGG + chr3_3:1958655-1958674 Msa0437960:CDS 40.0%
! ATTTCACGCCCAGTTTTACA+CGG + chr3_3:1959206-1959225 Msa0437960:intron 40.0%
! AAGCTTTATCCCACTAAGTG+GGG - chr3_3:1959252-1959271 None:intergenic 40.0%
! CAAGCTTTATCCCACTAAGT+GGG - chr3_3:1959253-1959272 None:intergenic 40.0%
! GGTCAGCAATTACTGTGTTT+TGG - chr3_3:1959453-1959472 None:intergenic 40.0%
ATGTGCTCAAGCATTCCAAT+TGG + chr3_3:1959571-1959590 Msa0437960:intron 40.0%
TGTGCTCAAGCATTCCAATT+GGG + chr3_3:1959572-1959591 Msa0437960:intron 40.0%
!! GTGCTTTTATCTTTTGGGTC+GGG + chr3_3:1959661-1959680 Msa0437960:CDS 40.0%
!! TGCTTTTATCTTTTGGGTCG+GGG + chr3_3:1959662-1959681 Msa0437960:CDS 40.0%
!! GTGCACTTGTTTCTGTTATC+AGG + chr3_3:1959777-1959796 Msa0437960:intron 40.0%
ATCGAGAGCTGTACATTCAT+CGG + chr3_3:1959833-1959852 Msa0437960:CDS 40.0%
!! ACGTTTTGGACGAAAGGTAT+TGG + chr3_3:1959870-1959889 Msa0437960:intron 40.0%
!!! CGTTTTGGACGAAAGGTATT+GGG + chr3_3:1959871-1959890 Msa0437960:intron 40.0%
CTTATAGTTGGGCCTAATCA+TGG + chr3_3:1959966-1959985 Msa0437960:intron 40.0%
AAGGGCAATGCAGTATATGT+TGG + chr3_3:1960110-1960129 Msa0437960:three_prime_UTR 40.0%
CCACCTTGCATGTAAGATAA+TGG - chr3_3:1960339-1960358 None:intergenic 40.0%
CCATTATCTTACATGCAAGG+TGG + chr3_3:1960336-1960355 Msa0437960:three_prime_UTR 40.0%
TGATTTCTGCAAAACCACCG+TGG - chr3_3:1956995-1957014 None:intergenic 45.0%
!! CGGTGGTTTTGCAGAAATCA+TGG + chr3_3:1956995-1957014 Msa0437960:five_prime_UTR 45.0%
ATGTTGCCAAAGCGGTCTTA+TGG + chr3_3:1957030-1957049 Msa0437960:five_prime_UTR 45.0%
TATGGTGGCTCACCTTGATT+TGG + chr3_3:1957048-1957067 Msa0437960:five_prime_UTR 45.0%
ATGGTGGCTCACCTTGATTT+GGG + chr3_3:1957049-1957068 Msa0437960:five_prime_UTR 45.0%
GTTCTTCTGACCCAATGGAA+TGG - chr3_3:1957276-1957295 None:intergenic 45.0%
GATAGGTTCTTCTGACCCAA+TGG - chr3_3:1957281-1957300 None:intergenic 45.0%
ATACGAGCACATGCATGCAT+TGG + chr3_3:1957566-1957585 Msa0437960:five_prime_UTR 45.0%
!! AAAGCGTTGGAGAAGACACA+AGG + chr3_3:1957594-1957613 Msa0437960:five_prime_UTR 45.0%
ACACGGAGTTCATGTAGTGT+CGG + chr3_3:1957625-1957644 Msa0437960:five_prime_UTR 45.0%
! AGCTATCAAGTTGCTTGTGC+TGG + chr3_3:1957700-1957719 Msa0437960:CDS 45.0%
TCTGATGAAATGCTGAGCAG+AGG + chr3_3:1957805-1957824 Msa0437960:CDS 45.0%
GTAAGGTGAACCTGAAGATC+CGG - chr3_3:1957871-1957890 None:intergenic 45.0%
AGTGACCTGACACCATATGA+AGG + chr3_3:1958065-1958084 Msa0437960:intron 45.0%
! CGTTTTACAAGGATCCTCAC+AGG - chr3_3:1958440-1958459 None:intergenic 45.0%
ATTACCCGCCTCATGATTAC+AGG + chr3_3:1958535-1958554 Msa0437960:intron 45.0%
TTACCCGCCTCATGATTACA+GGG + chr3_3:1958536-1958555 Msa0437960:intron 45.0%
GGTCACTGGTCAAACAAGTT+AGG - chr3_3:1958990-1959009 None:intergenic 45.0%
!! AAAACACATGGACTGGTCAC+TGG - chr3_3:1959004-1959023 None:intergenic 45.0%
TTTATCCCACTAAGTGGGGT+CGG - chr3_3:1959248-1959267 None:intergenic 45.0%
! CCAAGCTTTATCCCACTAAG+TGG - chr3_3:1959254-1959273 None:intergenic 45.0%
CCACTTAGTGGGATAAAGCT+TGG + chr3_3:1959251-1959270 Msa0437960:intron 45.0%
GTGGGATAAAGCTTGGTTGT+TGG + chr3_3:1959258-1959277 Msa0437960:intron 45.0%
TTGCTGACCTGAACAGAAGT+AGG + chr3_3:1959464-1959483 Msa0437960:intron 45.0%
GAGCTGTACATTCATCGGAT+TGG + chr3_3:1959838-1959857 Msa0437960:CDS 45.0%
TTCGTCCAAAACGTCCAGAA+CGG - chr3_3:1959864-1959883 None:intergenic 45.0%
!! TTCTGGACGTTTTGGACGAA+AGG + chr3_3:1959864-1959883 Msa0437960:CDS 45.0%
ACACCCTGCAAACCATGATT+AGG - chr3_3:1959981-1960000 None:intergenic 45.0%
! GTGCATGTTTTGTACCACGG+TGG + chr3_3:1956978-1956997 Msa0437960:five_prime_UTR 50.0%
CCACCATGATGTTGCCAAAG+CGG + chr3_3:1957022-1957041 Msa0437960:five_prime_UTR 50.0%
AGACCGCTTTGGCAACATCA+TGG - chr3_3:1957028-1957047 None:intergenic 50.0%
! TTGCCAAAGCGGTCTTATGG+TGG + chr3_3:1957033-1957052 Msa0437960:five_prime_UTR 50.0%
AATGCCCTGTGATGGTCAGT+TGG + chr3_3:1957189-1957208 Msa0437960:five_prime_UTR 50.0%
ATGCCCTGTGATGGTCAGTT+GGG + chr3_3:1957190-1957209 Msa0437960:five_prime_UTR 50.0%
! GGTCAGTTGGGCTGTTCTTT+TGG + chr3_3:1957202-1957221 Msa0437960:five_prime_UTR 50.0%
!!! CTTTTGGTTAGCCTGCTCAG+AGG + chr3_3:1957218-1957237 Msa0437960:five_prime_UTR 50.0%
ATGGAGCCTATGACCATGAC+AGG + chr3_3:1957357-1957376 Msa0437960:five_prime_UTR 50.0%
TGTGTCTCCGACAAGGGAAT+TGG + chr3_3:1957496-1957515 Msa0437960:five_prime_UTR 50.0%
TGTGAGGCCAATTCCCTTGT+CGG - chr3_3:1957506-1957525 None:intergenic 50.0%
! TGCATTGGAGGCAAAAGCGT+TGG + chr3_3:1957581-1957600 Msa0437960:five_prime_UTR 50.0%
CACGGAGTTCATGTAGTGTC+GGG + chr3_3:1957626-1957645 Msa0437960:five_prime_UTR 50.0%
ACGGAGTTCATGTAGTGTCG+GGG + chr3_3:1957627-1957646 Msa0437960:five_prime_UTR 50.0%
ATATCTCCCTCCGGATCTTC+AGG + chr3_3:1957858-1957877 Msa0437960:CDS 50.0%
CCACTCCTTCATATGGTGTC+AGG - chr3_3:1958073-1958092 None:intergenic 50.0%
CCTGACACCATATGAAGGAG+TGG + chr3_3:1958070-1958089 Msa0437960:intron 50.0%
AAGGAGTGGAAATGAGCCTG+AGG + chr3_3:1958084-1958103 Msa0437960:intron 50.0%
AGGAGTGGAAATGAGCCTGA+GGG + chr3_3:1958085-1958104 Msa0437960:intron 50.0%
!! GGATGTATCTTTAGGGTCCG+TGG + chr3_3:1958233-1958252 Msa0437960:intron 50.0%
CGCACATCACTCCAGTAACT+GGG - chr3_3:1958260-1958279 None:intergenic 50.0%
ACGCACATCACTCCAGTAAC+TGG - chr3_3:1958261-1958280 None:intergenic 50.0%
ATGCCCTGTAATCATGAGGC+GGG - chr3_3:1958542-1958561 None:intergenic 50.0%
GATGCCCTGTAATCATGAGG+CGG - chr3_3:1958543-1958562 None:intergenic 50.0%
CCTGATGCCCTGTAATCATG+AGG - chr3_3:1958546-1958565 None:intergenic 50.0%
! CCTCATGATTACAGGGCATC+AGG + chr3_3:1958543-1958562 Msa0437960:intron 50.0%
!!! TCCTTTTGGAACAGGTGGAC+TGG + chr3_3:1958776-1958795 Msa0437960:intron 50.0%
ACCAGTCCACCTGTTCCAAA+AGG - chr3_3:1958780-1958799 None:intergenic 50.0%
TCGTGGACTTGATGTACAGC+AGG + chr3_3:1958936-1958955 Msa0437960:CDS 50.0%
ACTAAGTGGGGTCGGTTACA+TGG - chr3_3:1959240-1959259 None:intergenic 50.0%
ATGTAACCGACCCCACTTAG+TGG + chr3_3:1959239-1959258 Msa0437960:intron 50.0%
TGTAACCGACCCCACTTAGT+GGG + chr3_3:1959240-1959259 Msa0437960:intron 50.0%
AGCACAAGTGCATGCCCAAT+TGG - chr3_3:1959589-1959608 None:intergenic 50.0%
!! TATCTTTTGGGTCGGGGTGA+AGG + chr3_3:1959668-1959687 Msa0437960:CDS 50.0%
!! ATTCATCGGATTGGCCGTTC+TGG + chr3_3:1959847-1959866 Msa0437960:CDS 50.0%
!! ATTGGCCGTTCTGGACGTTT+TGG + chr3_3:1959856-1959875 Msa0437960:CDS 50.0%
! TGGGCCTAATCATGGTTTGC+AGG + chr3_3:1959974-1959993 Msa0437960:intron 50.0%
! GGGCCTAATCATGGTTTGCA+GGG + chr3_3:1959975-1959994 Msa0437960:intron 50.0%
TTGTTTGCTCGACTGAACCC+AGG + chr3_3:1960244-1960263 Msa0437960:three_prime_UTR 50.0%
TGTTTGCTCGACTGAACCCA+GGG + chr3_3:1960245-1960264 Msa0437960:three_prime_UTR 50.0%
CCGCTTTGGCAACATCATGG+TGG - chr3_3:1957025-1957044 None:intergenic 55.0%
GAGCCACCATAAGACCGCTT+TGG - chr3_3:1957039-1957058 None:intergenic 55.0%
CAGCCCAACTGACCATCACA+GGG - chr3_3:1957196-1957215 None:intergenic 55.0%
ACAGCCCAACTGACCATCAC+AGG - chr3_3:1957197-1957216 None:intergenic 55.0%
TCAGAGGTCCCTCACTCATC+TGG + chr3_3:1957234-1957253 Msa0437960:five_prime_UTR 55.0%
CGAGCACATGCATGCATTGG+AGG + chr3_3:1957569-1957588 Msa0437960:five_prime_UTR 55.0%
ATCATGTCAAGGACTCGGCC+AGG - chr3_3:1957656-1957675 None:intergenic 55.0%
GGTGAACCTGAAGATCCGGA+GGG - chr3_3:1957867-1957886 None:intergenic 55.0%
AGGTGAACCTGAAGATCCGG+AGG - chr3_3:1957868-1957887 None:intergenic 55.0%
GGAGTGGAAATGAGCCTGAG+GGG + chr3_3:1958086-1958105 Msa0437960:intron 55.0%
CACTCCAGTAACTGGGACCA+CGG - chr3_3:1958253-1958272 None:intergenic 55.0%
ACGACTGATGTTTGGGCTCG+TGG + chr3_3:1958919-1958938 Msa0437960:CDS 55.0%
TCGACTGAACCCAGGGATGA+AGG + chr3_3:1960252-1960271 Msa0437960:three_prime_UTR 55.0%
TGAGTGAGGGACCTCTGAGC+AGG - chr3_3:1957232-1957251 None:intergenic 60.0%
! CATGTAGTGTCGGGGACTCC+TGG + chr3_3:1957635-1957654 Msa0437960:five_prime_UTR 60.0%
GGGTCCGTGGTCCCAGTTAC+TGG + chr3_3:1958246-1958265 Msa0437960:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 1956610 1960397 1956610 ID=Msa0437960;Name=Msa0437960
chr3_3 mRNA 1956610 1960397 1956610 ID=Msa0437960-mRNA-1;Parent=Msa0437960;Name=Msa0437960-mRNA-1;_AED=0.12;_eAED=0.12;_QI=959|0.75|0.77|0.88|0.75|0.88|9|288|261
chr3_3 exon 1956610 1957378 1956610 ID=Msa0437960-mRNA-1:exon:392;Parent=Msa0437960-mRNA-1
chr3_3 exon 1957481 1957721 1957481 ID=Msa0437960-mRNA-1:exon:393;Parent=Msa0437960-mRNA-1
chr3_3 exon 1957799 1957879 1957799 ID=Msa0437960-mRNA-1:exon:394;Parent=Msa0437960-mRNA-1
chr3_3 exon 1958371 1958478 1958371 ID=Msa0437960-mRNA-1:exon:395;Parent=Msa0437960-mRNA-1
chr3_3 exon 1958557 1958676 1958557 ID=Msa0437960-mRNA-1:exon:396;Parent=Msa0437960-mRNA-1
chr3_3 exon 1958790 1958961 1958790 ID=Msa0437960-mRNA-1:exon:397;Parent=Msa0437960-mRNA-1
chr3_3 exon 1959637 1959689 1959637 ID=Msa0437960-mRNA-1:exon:398;Parent=Msa0437960-mRNA-1
chr3_3 exon 1959799 1959885 1959799 ID=Msa0437960-mRNA-1:exon:399;Parent=Msa0437960-mRNA-1
chr3_3 exon 1959996 1960397 1959996 ID=Msa0437960-mRNA-1:exon:400;Parent=Msa0437960-mRNA-1
chr3_3 five_prime_UTR 1956610 1957378 1956610 ID=Msa0437960-mRNA-1:five_prime_utr;Parent=Msa0437960-mRNA-1
chr3_3 five_prime_UTR 1957481 1957670 1957481 ID=Msa0437960-mRNA-1:five_prime_utr;Parent=Msa0437960-mRNA-1
chr3_3 CDS 1957671 1957721 1957671 ID=Msa0437960-mRNA-1:cds;Parent=Msa0437960-mRNA-1
chr3_3 CDS 1957799 1957879 1957799 ID=Msa0437960-mRNA-1:cds;Parent=Msa0437960-mRNA-1
chr3_3 CDS 1958371 1958478 1958371 ID=Msa0437960-mRNA-1:cds;Parent=Msa0437960-mRNA-1
chr3_3 CDS 1958557 1958676 1958557 ID=Msa0437960-mRNA-1:cds;Parent=Msa0437960-mRNA-1
chr3_3 CDS 1958790 1958961 1958790 ID=Msa0437960-mRNA-1:cds;Parent=Msa0437960-mRNA-1
chr3_3 CDS 1959637 1959689 1959637 ID=Msa0437960-mRNA-1:cds;Parent=Msa0437960-mRNA-1
chr3_3 CDS 1959799 1959885 1959799 ID=Msa0437960-mRNA-1:cds;Parent=Msa0437960-mRNA-1
chr3_3 CDS 1959996 1960109 1959996 ID=Msa0437960-mRNA-1:cds;Parent=Msa0437960-mRNA-1
chr3_3 three_prime_UTR 1960110 1960397 1960110 ID=Msa0437960-mRNA-1:three_prime_utr;Parent=Msa0437960-mRNA-1
Gene Sequence

>Msa0437960

ATGATCAAAAGGAGAACATTGTGCACAAGAGCTATCAAGTTGCTTGTGCTGGATGAATCTGATGAAATGCTGAGCAGAGGATTTAAAGATCAAATTTATGATGTGTATAGATATCTCCCTCCGGATCTTCAGGTTTGCTTGATTTCTGCTACGCTACCTCATGAAATTTTGGAGATGACAAATAAGTTTATGACAGATCCTGTGAGGATCCTTGTAAAACGTGATGAATTGACATTGGAGGGCATCAGGCAATTTTATGTTGATGTTGAAAGGGAGGAATGGAAATTTGATACTCTTTGTGATCTTTATGATTATTTGACCATCACTCAAGCTGTTATATTCTGTAACACCAAGCGAAAGGTGGACTGGTTAACTGAAAAAATGCGTAACAATAATTTCACTATCTCATCAATGCACGGTGATATGCCTCAAAGAGAAAGAGATGCAATTATGGATGAATTTCGTGCTGGAACAACTCGAGTATTGATAACGACTGATGTTTGGGCTCGTGGACTTGATGTACAGCAGGCAAAGGTATTAGTTTTGTGCCCTGTTTGTGCTTTTATCTTTTGGGTCGGGGTGAAGGTTTCTCTAGTTATTAATTATGATCTTCCAAATAATCGAGAGCTGTACATTCATCGGATTGGCCGTTCTGGACGTTTTGGACGAAAGGGTGTTGCTATAAATTTTGTGAAAAGGGATGATATCAAGATCTTAAGAGACATCGAGCAATATTACAGTATTCAGATTCTTGATCTGCCGATGAATGTTGCTGATCTTATATAA
Protein sequence

>Msa0437960

MIKRRTLCTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCLISATLPHEILEMTNKFMTDPVRILVKRDELTLEGIRQFYVDVEREEWKFDTLCDLYDYLTITQAVIFCNTKRKVDWLTEKMRNNNFTISSMHGDMPQRERDAIMDEFRAGTTRVLITTDVWARGLDVQQAKVLVLCPVCAFIFWVGVKVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKRDDIKILRDIEQYYSIQILDLPMNVADLI*