AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0827140

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0827140 MtrunA17_Chr2g0297261 80.751 426 37 2 8 430 23 406 0.0 690
Msa0827140 MtrunA17_Chr2g0299681 56.627 415 135 3 19 430 41 413 6.09e-168 477
Msa0827140 MtrunA17_Chr2g0329931 55.769 416 139 3 18 430 40 413 1.21e-167 477
Msa0827140 MtrunA17_Chr4g0070981 56.145 415 137 3 19 430 41 413 3.61e-166 473
Msa0827140 MtrunA17_Chr8g0342861 55.422 415 140 3 19 430 41 413 7.76e-166 472
Msa0827140 MtrunA17_Chr1g0169331 38.799 433 183 7 37 430 9 398 1.95e-95 292
Msa0827140 MtrunA17_Chr8g0342851 38.961 385 160 5 51 430 5 319 2.99e-81 253
Msa0827140 MtrunA17_Chr7g0247221 34.644 407 219 5 20 423 144 506 3.67e-78 251
Msa0827140 MtrunA17_Chr7g0247191 35.135 407 217 5 20 423 151 513 4.47e-78 251
Msa0827140 MtrunA17_Chr7g0247181 34.644 407 219 5 20 423 141 503 4.84e-78 251
Msa0827140 MtrunA17_Chr2g0330401 32.080 399 230 7 17 411 94 455 9.66e-65 216
Msa0827140 MtrunA17_Chr5g0442191 29.604 429 254 10 8 428 68 456 3.77e-60 206
Msa0827140 MtrunA17_Chr4g0003441 32.235 425 235 11 12 426 99 480 8.15e-60 202
Msa0827140 MtrunA17_Chr3g0107851 31.144 411 230 9 17 413 115 486 4.09e-58 199
Msa0827140 MtrunA17_Chr4g0076491 28.806 427 249 7 7 413 275 666 3.74e-57 199
Msa0827140 MtrunA17_Chr7g0270131 29.318 440 251 9 1 424 217 612 6.60e-57 200
Msa0827140 MtrunA17_Chr6g0449741 28.571 427 248 8 7 413 237 626 1.17e-55 195
Msa0827140 MtrunA17_Chr3g0095031 30.788 419 242 10 13 423 82 460 3.02e-55 192
Msa0827140 MtrunA17_Chr3g0121351 30.986 426 234 11 9 412 133 520 4.82e-55 192
Msa0827140 MtrunA17_Chr1g0149251 35.505 307 189 7 128 426 31 336 6.29e-54 183
Msa0827140 MtrunA17_Chr2g0293631 31.658 398 228 7 19 411 496 854 1.07e-53 193
Msa0827140 MtrunA17_Chr6g0449911 30.370 405 228 10 17 411 163 523 2.70e-53 189
Msa0827140 MtrunA17_Chr7g0271121 34.483 377 198 13 46 413 132 468 5.72e-53 189
Msa0827140 MtrunA17_Chr1g0193491 31.854 383 216 9 22 397 117 461 1.41e-52 186
Msa0827140 MtrunA17_Chr4g0063551 31.358 405 236 8 20 411 141 516 3.28e-52 186
Msa0827140 MtrunA17_Chr6g0483491 27.603 413 254 5 17 425 8 379 1.15e-51 179
Msa0827140 MtrunA17_Chr7g0236841 27.603 413 254 5 17 425 8 379 1.38e-51 179
Msa0827140 MtrunA17_Chr1g0176041 28.780 410 243 9 17 411 152 527 1.30e-49 177
Msa0827140 MtrunA17_Chr1g0179761 30.184 434 226 14 19 419 80 469 2.72e-49 174
Msa0827140 MtrunA17_Chr2g0277821 30.467 407 228 9 17 411 502 865 1.72e-48 177
Msa0827140 MtrunA17_Chr1g0200181 29.219 397 234 6 17 403 143 502 5.05e-48 173
Msa0827140 MtrunA17_Chr1g0157691 28.404 426 257 9 16 430 144 532 2.23e-47 171
Msa0827140 MtrunA17_Chr5g0409981 29.744 390 231 8 17 399 102 455 1.42e-45 165
Msa0827140 MtrunA17_Chr4g0040761 28.087 413 248 8 18 423 18 388 1.62e-45 168
Msa0827140 MtrunA17_Chr2g0310581 27.295 414 249 6 15 419 49 419 3.08e-44 161
Msa0827140 MtrunA17_Chr7g0263771 28.941 425 247 9 15 429 125 504 1.01e-43 161
Msa0827140 MtrunA17_Chr3g0098121 28.744 414 243 9 8 411 140 511 1.09e-42 160
Msa0827140 MtrunA17_Chr6g0461751 27.053 414 245 9 12 411 131 501 1.52e-42 157
Msa0827140 MtrunA17_Chr4g0058591 29.429 350 207 5 16 363 199 510 1.84e-42 156
Msa0827140 MtrunA17_Chr8g0347161 28.037 428 240 15 20 427 103 482 1.39e-38 146
Msa0827140 MtrunA17_Chr2g0309551 24.889 450 266 8 16 419 106 529 2.74e-37 142
Msa0827140 MtrunA17_Chr2g0300291 27.470 415 248 9 8 411 129 501 4.25e-37 144
Msa0827140 MtrunA17_Chr6g0466611 26.024 415 254 9 16 413 139 517 9.50e-37 142
Msa0827140 MtrunA17_Chr8g0347171 27.442 430 244 13 20 429 161 542 1.35e-36 141
Msa0827140 MtrunA17_Chr4g0062301 27.708 397 230 12 31 413 109 462 9.10e-36 139
Msa0827140 MtrunA17_Chr3g0114081 30.945 307 185 8 119 400 80 384 1.05e-35 139
Msa0827140 MtrunA17_Chr2g0307471 26.341 410 246 11 13 409 85 451 2.20e-35 137
Msa0827140 MtrunA17_Chr8g0347151 25.467 428 245 12 20 424 202 578 3.29e-35 137
Msa0827140 MtrunA17_Chr1g0204391 27.865 384 249 6 22 397 47 410 3.38e-35 137
Msa0827140 MtrunA17_Chr7g0236831 24.601 439 252 11 19 400 163 579 1.88e-34 136
Msa0827140 MtrunA17_Chr8g0386451 25.349 430 243 13 20 424 289 665 2.46e-34 135
Msa0827140 MtrunA17_Chr6g0475251 29.426 401 216 14 15 397 102 453 1.48e-33 133
Msa0827140 MtrunA17_Chr5g0443991 28.493 365 212 8 46 400 102 427 1.30e-31 127
Msa0827140 MtrunA17_Chr4g0034411 27.321 377 224 9 46 412 102 438 6.40e-31 125
Msa0827140 MtrunA17_Chr4g0025141 33.824 204 117 5 234 419 14 217 2.28e-30 117
Msa0827140 MtrunA17_Chr3g0137901 38.415 164 96 3 267 426 10 172 1.09e-29 114
Msa0827140 MtrunA17_Chr4g0029191 23.790 496 260 17 10 424 30 488 5.79e-27 113
Msa0827140 MtrunA17_Chr3g0145781 24.350 423 260 11 16 411 129 518 6.56e-24 103
Msa0827140 MtrunA17_Chr4g0062321 28.436 211 146 4 163 369 25 234 1.67e-20 90.5
Msa0827140 MtrunA17_Chr4g0025101 30.172 232 93 9 218 422 7 196 2.42e-18 83.6
Msa0827140 MtrunA17_Chr4g0004301 24.167 360 186 8 129 411 102 451 3.02e-17 84.0
Msa0827140 MtrunA17_Chr5g0429221 20.782 409 265 9 17 414 1 361 3.56e-17 83.2
Msa0827140 MtrunA17_Chr2g0301281 34.343 99 61 2 329 424 388 485 1.75e-14 75.5
Msa0827140 MtrunA17_Chr5g0402301 26.316 190 105 5 274 430 26 213 4.40e-13 68.2
Msa0827140 MtrunA17_Chr3g0137891 31.579 133 88 3 128 257 31 163 1.38e-12 67.0
Msa0827140 MtrunA17_Chr1g0155201 25.200 250 163 9 172 414 5 237 2.76e-12 67.8
Msa0827140 MtrunA17_Chr8g0377041 30.000 100 67 1 296 392 489 588 5.32e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0827140 AT3G19760.1 74.413 426 64 3 8 430 25 408 0.0 645
Msa0827140 AT1G51380.1 64.554 426 103 5 8 430 12 392 0.0 560
Msa0827140 AT3G13920.1 57.212 416 133 3 18 430 39 412 1.70e-170 484
Msa0827140 AT3G13920.3 57.212 416 133 3 18 430 29 402 1.81e-170 484
Msa0827140 AT1G54270.1 56.010 416 138 3 18 430 39 412 1.53e-166 474
Msa0827140 AT3G13920.4 56.250 416 132 4 18 430 39 407 1.52e-164 469
Msa0827140 AT1G72730.1 55.422 415 140 3 19 430 42 414 5.23e-164 468
Msa0827140 AT1G54270.2 55.048 416 137 4 18 430 39 407 1.36e-160 459
Msa0827140 AT3G13920.2 57.868 394 121 3 18 408 39 390 1.38e-160 459
Msa0827140 AT3G13920.5 57.868 394 121 3 18 408 43 394 1.89e-160 459
Msa0827140 AT1G51380.2 64.262 305 67 3 8 312 12 274 3.28e-138 397
Msa0827140 AT1G51380.4 62.500 264 57 3 8 271 12 233 1.36e-109 325
Msa0827140 AT1G51380.3 62.500 264 57 3 8 271 12 233 1.66e-109 325
Msa0827140 AT4G00660.1 34.541 414 224 5 20 430 133 502 9.51e-80 255
Msa0827140 AT4G00660.2 34.541 414 224 5 20 430 133 502 9.51e-80 255
Msa0827140 AT3G61240.2 33.333 414 229 5 20 430 126 495 5.34e-76 245
Msa0827140 AT3G61240.1 33.333 414 229 5 20 430 126 495 5.34e-76 245
Msa0827140 AT2G45810.1 33.661 407 223 6 20 423 156 518 6.73e-74 241
Msa0827140 AT1G55150.1 34.278 388 212 8 17 399 98 447 7.85e-66 219
Msa0827140 AT1G55150.2 34.278 388 212 8 17 399 123 472 1.34e-65 219
Msa0827140 AT5G11170.1 32.471 425 234 10 12 426 38 419 3.20e-62 207
Msa0827140 AT5G11200.1 32.471 425 234 10 12 426 38 419 3.20e-62 207
Msa0827140 AT5G63120.2 33.167 401 223 8 17 411 164 525 5.90e-62 211
Msa0827140 AT3G01540.4 33.014 418 229 8 17 422 157 535 5.80e-60 206
Msa0827140 AT3G01540.2 33.014 418 229 8 17 422 157 535 5.80e-60 206
Msa0827140 AT3G01540.3 33.014 418 229 8 17 422 157 535 5.80e-60 206
Msa0827140 AT3G01540.1 33.014 418 229 8 17 422 157 535 7.39e-60 206
Msa0827140 AT5G14610.6 32.057 418 233 8 17 422 160 538 8.89e-60 206
Msa0827140 AT5G14610.2 32.057 418 233 8 17 422 160 538 9.81e-60 206
Msa0827140 AT5G14610.5 32.057 418 233 8 17 422 168 546 1.38e-59 206
Msa0827140 AT3G53110.1 30.751 426 229 12 20 422 93 475 4.56e-58 198
Msa0827140 AT3G06480.1 33.493 418 227 9 19 424 436 814 1.17e-57 204
Msa0827140 AT2G33730.1 28.806 427 249 7 7 413 302 693 2.19e-57 201
Msa0827140 AT3G22330.1 29.512 410 245 7 19 423 105 475 3.74e-57 198
Msa0827140 AT3G22310.2 29.238 407 242 7 23 423 121 487 7.02e-57 197
Msa0827140 AT3G22310.1 29.238 407 242 7 23 423 121 487 9.02e-57 197
Msa0827140 AT5G14610.7 31.841 402 223 8 33 422 45 407 1.02e-55 192
Msa0827140 AT5G14610.3 31.841 402 223 8 33 422 45 407 1.02e-55 192
Msa0827140 AT5G14610.1 31.931 404 224 8 31 422 242 606 1.49e-54 193
Msa0827140 AT2G47330.1 28.910 422 250 7 17 429 227 607 2.31e-54 193
Msa0827140 AT5G11200.3 29.614 466 234 11 12 426 38 460 6.09e-54 187
Msa0827140 AT5G26742.1 31.667 420 242 11 19 430 103 485 1.08e-53 191
Msa0827140 AT5G26742.2 31.667 420 242 11 19 430 103 485 1.09e-53 191
Msa0827140 AT5G11170.2 31.746 378 207 9 57 426 2 336 2.60e-53 182
Msa0827140 AT5G26742.3 33.588 393 215 12 47 430 37 392 2.87e-53 189
Msa0827140 AT2G42520.2 30.244 410 241 10 17 413 158 535 3.85e-52 185
Msa0827140 AT2G42520.1 30.244 410 241 10 17 413 158 535 3.85e-52 185
Msa0827140 AT2G42520.3 30.244 410 241 10 17 413 158 535 3.85e-52 185
Msa0827140 AT5G60990.1 28.954 411 257 7 17 423 8 387 7.35e-52 181
Msa0827140 AT3G58510.1 30.310 419 245 10 9 413 140 525 8.49e-52 184
Msa0827140 AT3G58510.3 30.310 419 245 10 9 413 140 525 8.49e-52 184
Msa0827140 AT3G58510.2 30.310 419 245 10 9 413 140 525 8.49e-52 184
Msa0827140 AT1G20920.2 29.412 425 245 8 17 429 190 571 1.04e-50 183
Msa0827140 AT1G20920.4 29.343 426 244 8 17 429 528 909 2.35e-49 181
Msa0827140 AT1G20920.6 29.343 426 244 8 17 429 528 909 2.35e-49 181
Msa0827140 AT1G20920.3 29.343 426 244 8 17 429 528 909 2.35e-49 181
Msa0827140 AT1G20920.7 29.343 426 244 8 17 429 528 909 2.35e-49 181
Msa0827140 AT1G20920.5 29.343 426 244 8 17 429 528 909 2.35e-49 181
Msa0827140 AT1G20920.1 29.343 426 244 8 17 429 528 909 2.35e-49 181
Msa0827140 AT3G58570.1 29.268 410 245 9 17 413 145 522 5.64e-49 177
Msa0827140 AT3G09720.2 31.566 396 220 6 22 411 145 495 9.56e-49 174
Msa0827140 AT3G09720.1 31.566 396 220 6 22 411 145 495 9.56e-49 174
Msa0827140 AT4G33370.1 29.647 425 249 9 17 429 96 482 2.49e-48 173
Msa0827140 AT1G28180.1 30.645 372 214 9 48 413 2 335 1.29e-47 167
Msa0827140 AT1G77030.1 26.829 410 253 7 20 423 30 398 1.96e-47 174
Msa0827140 AT5G51280.1 29.471 397 233 6 17 403 145 504 3.02e-47 171
Msa0827140 AT1G16280.1 28.469 418 235 11 11 413 51 419 9.49e-46 165
Msa0827140 AT5G14610.4 30.769 351 202 6 17 365 168 479 1.06e-45 165
Msa0827140 AT3G02065.3 27.861 402 246 10 17 411 109 473 2.47e-44 162
Msa0827140 AT3G02065.2 27.861 402 246 10 17 411 109 473 2.47e-44 162
Msa0827140 AT5G63120.1 30.398 352 203 7 15 363 162 474 5.14e-44 160
Msa0827140 AT5G63120.3 30.398 352 203 7 15 363 162 474 6.03e-44 160
Msa0827140 AT5G63120.4 30.398 352 203 7 15 363 162 474 6.03e-44 160
Msa0827140 AT5G63120.5 30.398 352 203 7 15 363 162 474 6.03e-44 160
Msa0827140 AT1G31970.1 29.104 402 238 10 10 399 103 469 8.43e-44 160
Msa0827140 AT1G12770.2 26.813 455 252 11 16 420 108 531 2.04e-43 160
Msa0827140 AT1G12770.1 26.813 455 252 11 16 420 108 531 2.04e-43 160
Msa0827140 AT3G06480.2 32.092 349 196 7 19 365 436 745 1.14e-42 160
Msa0827140 AT3G02065.1 31.597 288 187 6 131 411 52 336 2.26e-41 150
Msa0827140 AT3G09620.2 28.199 422 219 10 17 426 396 745 3.97e-41 156
Msa0827140 AT3G09620.1 28.199 422 219 10 17 426 395 744 4.27e-41 156
Msa0827140 AT5G08620.1 26.856 458 245 14 3 429 65 463 3.13e-40 151
Msa0827140 AT4G16630.1 28.954 411 246 8 8 411 156 527 4.55e-40 153
Msa0827140 AT3G18600.1 27.833 406 245 10 12 409 83 448 1.28e-39 150
Msa0827140 AT5G63630.1 26.437 435 242 13 20 429 56 437 1.43e-39 149
Msa0827140 AT5G08610.1 27.586 435 237 13 20 429 384 765 1.75e-39 151
Msa0827140 AT5G63630.2 26.437 435 242 13 20 429 250 631 4.07e-38 147
Msa0827140 AT5G65900.1 26.728 434 254 10 18 430 154 544 2.02e-37 144
Msa0827140 AT1G63250.1 27.335 439 246 13 9 424 319 707 1.46e-36 142
Msa0827140 AT5G05450.1 27.157 394 229 9 28 400 26 382 1.74e-36 141
Msa0827140 AT2G07750.1 26.682 446 240 13 9 424 366 754 1.69e-35 139
Msa0827140 AT1G71370.1 27.621 391 234 10 22 400 20 373 2.03e-35 138
Msa0827140 AT5G62190.1 28.429 401 224 9 15 399 96 449 2.10e-35 139
Msa0827140 AT5G11200.2 27.876 452 278 15 12 426 38 478 5.12e-35 135
Msa0827140 AT5G54910.1 25.980 408 251 9 16 413 69 435 4.01e-34 135
Msa0827140 AT4G09730.1 24.113 423 260 10 12 413 106 488 3.83e-32 129
Msa0827140 AT2G40700.1 23.958 480 251 15 13 414 25 468 2.03e-28 118
Msa0827140 AT4G34910.1 23.894 452 254 12 16 416 44 456 1.27e-26 112
Msa0827140 AT3G06980.1 24.471 425 262 11 13 411 369 760 7.95e-26 110
Msa0827140 AT3G16840.1 25.121 207 129 5 29 231 201 385 5.62e-16 80.9
Msa0827140 AT3G16840.1 26.667 135 91 2 292 418 490 624 2.12e-11 66.6
Msa0827140 AT3G16840.2 25.121 207 129 5 29 231 202 386 5.72e-16 80.9
Msa0827140 AT3G16840.2 26.667 135 91 2 292 418 491 625 2.12e-11 66.6
Msa0827140 AT1G27880.2 29.412 119 81 1 296 411 483 601 2.32e-12 69.7
Msa0827140 AT1G27880.1 29.412 119 81 1 296 411 483 601 3.16e-12 69.3
Msa0827140 AT4G37020.1 21.762 193 112 5 275 430 22 212 6.97e-11 62.0

Find 96 sgRNAs with CRISPR-Local

Find 429 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAAACTGAAAATGTTATTT+TGG 0.151334 5_3:+68206135 Msa0827140:CDS
TGTTGCTGATCTTATATAAA+AGG 0.182863 5_3:+68208703 Msa0827140:exon
ATGTACAGCTCTCGATTATT+TGG 0.242192 5_3:-68208438 None:intergenic
TACGCTACCTCATGAAATTT+TGG 0.254057 5_3:+68207000 Msa0827140:CDS
TGCCGTTCTACCTATCATTC+AGG 0.291705 5_3:+68202022 Msa0827140:CDS
AAGAGAAAGAGATGCAATTA+TGG 0.315960 5_3:+68207473 Msa0827140:CDS
GTCAAATTTATGCTAGGAAT+TGG 0.320658 5_3:+68208758 Msa0827140:three_prime_UTR
ATTGGCCGTTCTGGACGTTT+TGG 0.323765 5_3:+68208468 Msa0827140:CDS
TATTGATAACGACTGATGTT+TGG 0.325693 5_3:+68207523 Msa0827140:CDS
ATATCTCCCTCCGGATCTTC+AGG 0.332541 5_3:+68206470 Msa0827140:CDS
GACTTATGAAATTTATTGAT+AGG 0.338371 5_3:-68205908 None:intergenic
TTGTAATTTGAACAGGTTGC+AGG 0.352767 5_3:+68206078 Msa0827140:intron
CCACCTTGCATGTAAGATAA+TGG 0.364408 5_3:-68208948 None:intergenic
ATTCATCGGATTGGCCGTTC+TGG 0.374179 5_3:+68208459 Msa0827140:CDS
ATTGCATCTCTTTCTCTTTG+AGG 0.376417 5_3:-68207468 None:intergenic
GATTGCTCTCACTGTTTGCC+AGG 0.377469 5_3:+68202094 Msa0827140:CDS
ATTGATAACGACTGATGTTT+GGG 0.390146 5_3:+68207524 Msa0827140:CDS
TGTGTCTCCGACAAGGGAAT+TGG 0.408057 5_3:+68206108 Msa0827140:CDS
CTTATGAAACTCTTGACATA+TGG 0.410214 5_3:+68208820 Msa0827140:three_prime_UTR
TCAGAGGTCCCTCACTCATC+TGG 0.412635 5_3:+68205847 Msa0827140:CDS
AGTATACCTGTCATGGTCAT+AGG 0.424071 5_3:-68205975 None:intergenic
AGCAATCATGGAGGACTTGC+CGG 0.434474 5_3:-68202078 None:intergenic
ACGTCACGACCCTGAATGAT+AGG 0.436959 5_3:-68202032 None:intergenic
CATGTAGTGTCGGGGACTCC+TGG 0.441130 5_3:+68206247 Msa0827140:CDS
TGTGAGGCCAATTCCCTTGT+CGG 0.444766 5_3:-68206115 None:intergenic
AAGGTTTCTCAAAACCGTAT+TGG 0.451081 5_3:-68201983 None:intergenic
GTCATCGCTCAGTCTCAATC+TGG 0.453284 5_3:+68202053 Msa0827140:CDS
CCTCATGATTACAGGGCATC+AGG 0.461625 5_3:+68207155 Msa0827140:intron
CTGCGTGGAATTTACCAATA+CGG 0.462856 5_3:+68201969 Msa0827140:CDS
AATAAATTTCATAAGTCAAG+AGG 0.463570 5_3:+68205914 Msa0827140:CDS
CACGGAGTTCATGTAGTGTC+GGG 0.464753 5_3:+68206238 Msa0827140:CDS
GCAAACAGTGAGAGCAATCA+TGG 0.475280 5_3:-68202090 None:intergenic
ACGACTGATGTTTGGGCTCG+TGG 0.476458 5_3:+68207531 Msa0827140:CDS
CGAGCACATGCATGCATTGG+AGG 0.480977 5_3:+68206181 Msa0827140:CDS
GCTCAGTCTCAATCTGGAAC+CGG 0.482872 5_3:+68202059 Msa0827140:CDS
GTTGCTGATCTTATATAAAA+GGG 0.485003 5_3:+68208704 Msa0827140:exon
TAGAACGGCACGCTGTTGAA+TGG 0.489358 5_3:-68202009 None:intergenic
ATAAATTGTGACCATTCCAT+TGG 0.492230 5_3:+68205875 Msa0827140:CDS
GATTCAGAGCTTCGATAAGA+TGG 0.496481 5_3:+68201929 Msa0827140:CDS
AGCTATCAAGTTGCTTGTGC+TGG 0.499944 5_3:+68206312 Msa0827140:CDS
TCACTCAGCGGCTATGGCTA+TGG 0.502793 5_3:+68201869 None:intergenic
GTAAGGTGAACCTGAAGATC+CGG 0.506742 5_3:-68206480 None:intergenic
TCGACTGAACCCAGGGATGA+AGG 0.510337 5_3:+68208864 Msa0827140:three_prime_UTR
TGCATTGGAGGCAAAAGCGT+TGG 0.520539 5_3:+68206193 Msa0827140:CDS
ATCGAGAGCTGTACATTCAT+CGG 0.523237 5_3:+68208445 Msa0827140:CDS
GCCGTTCTACCTATCATTCA+GGG 0.525768 5_3:+68202023 Msa0827140:CDS
AAAAGTAAACCTTCATCCCT+GGG 0.526364 5_3:-68208873 None:intergenic
GTGTTTGTCAAATTTATGCT+AGG 0.528416 5_3:+68208752 Msa0827140:three_prime_UTR
TAAATTGTGACCATTCCATT+GGG 0.531754 5_3:+68205876 Msa0827140:CDS
GAGTCCTTGACATGATCAAA+AGG 0.531974 5_3:+68206272 Msa0827140:CDS
TTATGTTGATGTTGAAAGGG+AGG 0.536096 5_3:+68207183 Msa0827140:CDS
TGAGTGAGGGACCTCTGAGC+AGG 0.537060 5_3:-68205842 None:intergenic
TTTAATTGTGTCTCCGACAA+GGG 0.538538 5_3:+68206102 Msa0827140:CDS
CTTTAATTGTGTCTCCGACA+AGG 0.539027 5_3:+68206101 Msa0827140:CDS
GCACGCTGTTGAATGGATGA+AGG 0.539674 5_3:-68202002 None:intergenic
GAGCTGTACATTCATCGGAT+TGG 0.543246 5_3:+68208450 Msa0827140:CDS
TGTCCATTATCTTACATGCA+AGG 0.543686 5_3:+68208945 Msa0827140:three_prime_UTR
ATACGAGCACATGCATGCAT+TGG 0.549970 5_3:+68206178 Msa0827140:CDS
TTGTTTGCTCGACTGAACCC+AGG 0.550223 5_3:+68208856 Msa0827140:three_prime_UTR
AAGGGCAATGCAGTATATGT+TGG 0.553284 5_3:+68208722 Msa0827140:three_prime_UTR
TCAAAGCTTCGAGACATCGA+AGG 0.553831 5_3:+68201896 Msa0827140:CDS
ATGGAGCCTATGACCATGAC+AGG 0.559032 5_3:+68205969 Msa0827140:CDS
ATCATGTCAAGGACTCGGCC+AGG 0.564010 5_3:-68206265 None:intergenic
CATAGACAGTATACCTGTCA+TGG 0.565778 5_3:-68205982 None:intergenic
GATAGGTTCTTCTGACCCAA+TGG 0.565909 5_3:-68205891 None:intergenic
AAAATTAATCTCAGCCGTAT+CGG 0.568278 5_3:-68208900 None:intergenic
ATAAGATCAGCAACATTCAT+CGG 0.575456 5_3:-68208695 None:intergenic
ATTCAGAGCTTCGATAAGAT+GGG 0.579850 5_3:+68201930 Msa0827140:CDS
ACGTGATGAATTGACATTGG+AGG 0.580038 5_3:+68207069 Msa0827140:CDS
TGTTTGCTCGACTGAACCCA+GGG 0.581642 5_3:+68208857 Msa0827140:three_prime_UTR
ATTATGGATGAATTTCGTGC+TGG 0.582575 5_3:+68207489 Msa0827140:CDS
AAAACGTGATGAATTGACAT+TGG 0.590799 5_3:+68207066 Msa0827140:CDS
ACACGGAGTTCATGTAGTGT+CGG 0.591877 5_3:+68206237 Msa0827140:CDS
TTGATGTTGAAAGGGAGGAA+TGG 0.599804 5_3:+68207188 Msa0827140:CDS
TATATTCACCAGATGAGTGA+GGG 0.601227 5_3:-68205855 None:intergenic
ATAAATTTCATAAGTCAAGA+GGG 0.604623 5_3:+68205915 Msa0827140:CDS
TTCACTATCTCATCAATGCA+CGG 0.607282 5_3:+68207438 Msa0827140:CDS
GTCATCTCCAAAATTTCATG+AGG 0.612581 5_3:-68207007 None:intergenic
ATTCTGTAACACCAAGCGAA+AGG 0.615167 5_3:+68207267 Msa0827140:CDS
TGTGTATAGATATCTCCCTC+CGG 0.617507 5_3:+68206461 Msa0827140:CDS
TTATATTCACCAGATGAGTG+AGG 0.627176 5_3:-68205856 None:intergenic
GAATATAACAGCTTGAGTGA+TGG 0.627409 5_3:-68207248 None:intergenic
GTTCTTCTGACCCAATGGAA+TGG 0.630104 5_3:-68205886 None:intergenic
TTCGTCCAAAACGTCCAGAA+CGG 0.636927 5_3:-68208473 None:intergenic
ACCCTGAATGATAGGTAGAA+CGG 0.644492 5_3:-68202024 None:intergenic
CCATTATCTTACATGCAAGG+TGG 0.645222 5_3:+68208948 Msa0827140:three_prime_UTR
CAAAGCTTCGAGACATCGAA+GGG 0.648344 5_3:+68201897 Msa0827140:CDS
AGGTGAACCTGAAGATCCGG+AGG 0.649252 5_3:-68206477 None:intergenic
ATCAAAGACGATTTACTGCG+TGG 0.662617 5_3:+68201954 Msa0827140:CDS
AAAGCGTTGGAGAAGACACA+AGG 0.685686 5_3:+68206206 Msa0827140:CDS
ACGGAGTTCATGTAGTGTCG+GGG 0.690010 5_3:+68206239 Msa0827140:CDS
GACACAAGGAAACTTGAACA+CGG 0.692105 5_3:+68206220 Msa0827140:CDS
TCTGATGAAATGCTGAGCAG+AGG 0.698342 5_3:+68206417 Msa0827140:CDS
GGTGAACCTGAAGATCCGGA+GGG 0.711398 5_3:-68206476 None:intergenic
AGTTTATGACAGATCCTGTG+AGG 0.717164 5_3:+68207035 Msa0827140:CDS
AACAGTGAGAGCAATCATGG+AGG 0.733411 5_3:-68202087 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTTTAATT+TGG + chr5_3:68204901-68204920 Msa0827140:intron 0.0%
!!! TTTTACTTATATTACTTTTT+AGG + chr5_3:68204746-68204765 Msa0827140:intron 10.0%
!! CTTTAATATATCTTTGAATA+AGG + chr5_3:68202456-68202475 Msa0827140:intron 15.0%
!! AGTAAATTACATAGAAATTA+TGG - chr5_3:68203237-68203256 None:intergenic 15.0%
!! AATTTCTATGTAATTTACTT+AGG + chr5_3:68203238-68203257 Msa0827140:intron 15.0%
!!! GCTTTTAAAATATAATTTGT+GGG - chr5_3:68203286-68203305 None:intergenic 15.0%
!!! TGCTTTTAAAATATAATTTG+TGG - chr5_3:68203287-68203306 None:intergenic 15.0%
!!! TATACTTGATTTTTGAATTT+CGG - chr5_3:68203952-68203971 None:intergenic 15.0%
!! ATATTTGATAAAAATGAGTT+CGG + chr5_3:68204073-68204092 Msa0827140:intron 15.0%
!!! AATGTACTTATTTTAAAACA+TGG + chr5_3:68205751-68205770 Msa0827140:intron 15.0%
!!! ATATTTTTCTTTTTTATTGC+AGG + chr5_3:68206389-68206408 Msa0827140:intron 15.0%
!!! TTGTTTAATTTTTAATGTGT+AGG + chr5_3:68206961-68206980 Msa0827140:intron 15.0%
!! AAGGTAAATGAAAATTATAA+AGG + chr5_3:68207286-68207305 Msa0827140:intron 15.0%
!!! TAATATTTGTTTGTTATTAG+AGG + chr5_3:68208229-68208248 Msa0827140:intron 15.0%
!! TAAGAAATGTAACAATTAAA+TGG + chr5_3:68208342-68208361 Msa0827140:intron 15.0%
!!! AAGTTTTAGGTTGAATTTAT+TGG + chr5_3:68202206-68202225 Msa0827140:intron 20.0%
!!! TGAAGTTTTTTACTTTCTTT+AGG + chr5_3:68202247-68202266 Msa0827140:intron 20.0%
!!! TTTTAAACATTTTGTCACTA+GGG - chr5_3:68202718-68202737 None:intergenic 20.0%
!!! TATTTTAAAAGCAGACTAAT+TGG + chr5_3:68203294-68203313 Msa0827140:intron 20.0%
!!! ATGAAGGAAATTCATTTTTT+TGG + chr5_3:68203353-68203372 Msa0827140:intron 20.0%
!!! TTTTCATAATGAGAAACTAA+AGG + chr5_3:68203444-68203463 Msa0827140:intron 20.0%
!!! AATTTATTTTACCACTTACT+CGG - chr5_3:68203611-68203630 None:intergenic 20.0%
!!! GTAAGTGGTAAAATAAATTT+TGG + chr5_3:68203612-68203631 Msa0827140:intron 20.0%
!!! TGAAATTTGTATTAGTTTTG+CGG + chr5_3:68203718-68203737 Msa0827140:intron 20.0%
!!! ATGAGAGTTTTAATTTTCTT+TGG + chr5_3:68203783-68203802 Msa0827140:intron 20.0%
!!! TGAGAGTTTTAATTTTCTTT+GGG + chr5_3:68203784-68203803 Msa0827140:intron 20.0%
!! CACAAAAAAATAGATGAATA+TGG + chr5_3:68204037-68204056 Msa0827140:intron 20.0%
!!! GAAAAAAGTGTTAATGAATA+TGG + chr5_3:68204101-68204120 Msa0827140:intron 20.0%
!! ACAAAAAAAAAAAAGAGTTG+CGG + chr5_3:68204124-68204143 Msa0827140:intron 20.0%
!!! GTTTTTTTTTTCAACAACTT+TGG - chr5_3:68204175-68204194 None:intergenic 20.0%
!! ATCACTTAAAAATACACTTA+AGG - chr5_3:68204272-68204291 None:intergenic 20.0%
!! ATTTGAATAAGGAATGTATT+TGG + chr5_3:68204412-68204431 Msa0827140:intron 20.0%
!! AATCAATTCAATATCTCATA+TGG - chr5_3:68204443-68204462 None:intergenic 20.0%
!! AAGCTAGATTAATAATTTGA+TGG - chr5_3:68204612-68204631 None:intergenic 20.0%
!! GTAATATAAGTAAAACATGA+AGG - chr5_3:68204741-68204760 None:intergenic 20.0%
!! AAAATGATTAAAGATAGTGA+CGG - chr5_3:68205351-68205370 None:intergenic 20.0%
!! GACTTATGAAATTTATTGAT+AGG - chr5_3:68205911-68205930 None:intergenic 20.0%
!! AATAAATTTCATAAGTCAAG+AGG + chr5_3:68205914-68205933 Msa0827140:CDS 20.0%
!! ATAAATTTCATAAGTCAAGA+GGG + chr5_3:68205915-68205934 Msa0827140:CDS 20.0%
!! TCAAATTACAAAATTTCAGT+CGG - chr5_3:68206069-68206088 None:intergenic 20.0%
!!! TGAAATTTTGTAATTTGAAC+AGG + chr5_3:68206071-68206090 Msa0827140:intron 20.0%
!!! ACAAACTGAAAATGTTATTT+TGG + chr5_3:68206135-68206154 Msa0827140:CDS 20.0%
!!! AAAATGTTATTTTGGCAATT+GGG + chr5_3:68206143-68206162 Msa0827140:CDS 20.0%
!! AATTTGTCTGAATTAGAAAT+TGG - chr5_3:68206601-68206620 None:intergenic 20.0%
!! TTTCTAATTCAGACAAATTT+AGG + chr5_3:68206602-68206621 Msa0827140:intron 20.0%
!! ACAAATTTAGGTGATAAATA+GGG + chr5_3:68206614-68206633 Msa0827140:intron 20.0%
!!! AATTTTATGTTGATGTTGAA+AGG + chr5_3:68207179-68207198 Msa0827140:CDS 20.0%
!!! ATTTTATGTTGATGTTGAAA+GGG + chr5_3:68207180-68207199 Msa0827140:CDS 20.0%
!! GAAAATTATAAAGGTTCTTT+AGG + chr5_3:68207295-68207314 Msa0827140:intron 20.0%
!!! CTAGTCTTTATATTTACATA+TGG + chr5_3:68207349-68207368 Msa0827140:intron 20.0%
!! TTATATTTACATATGGTGAT+TGG + chr5_3:68207356-68207375 Msa0827140:intron 20.0%
!!! ATTGGTTATATATATCCTTT+TGG + chr5_3:68207374-68207393 Msa0827140:intron 20.0%
!! TATTATTATTACATACAGCA+AGG + chr5_3:68208103-68208122 Msa0827140:intron 20.0%
!!! TATTACTTGTTTCTTATAGT+TGG + chr5_3:68208566-68208585 Msa0827140:intron 20.0%
!!! ATTACTTGTTTCTTATAGTT+GGG + chr5_3:68208567-68208586 Msa0827140:intron 20.0%
!!! TTGCTATAAATTTTGTGAAA+AGG + chr5_3:68208612-68208631 Msa0827140:CDS 20.0%
!!! TGCTATAAATTTTGTGAAAA+GGG + chr5_3:68208613-68208632 Msa0827140:CDS 20.0%
! GTTATGTTTCAATTAGCATT+CGG + chr5_3:68202173-68202192 Msa0827140:intron 25.0%
!!! TTAGGTTGAATTTATTGGTT+AGG + chr5_3:68202211-68202230 Msa0827140:intron 25.0%
!! TAGGTTGAATTTATTGGTTA+GGG + chr5_3:68202212-68202231 Msa0827140:intron 25.0%
!!! TATTGGTTAGGGTTTTTATA+TGG + chr5_3:68202223-68202242 Msa0827140:intron 25.0%
! AACCTTGATTTCTTAAATCT+AGG - chr5_3:68202303-68202322 None:intergenic 25.0%
! TCTTGTATTAACTTAAACGA+CGG + chr5_3:68202411-68202430 Msa0827140:intron 25.0%
! ATTGGAAGACTGAAATTTAT+AGG + chr5_3:68202485-68202504 Msa0827140:intron 25.0%
! TTGTGATCATATGATGATAA+GGG - chr5_3:68202570-68202589 None:intergenic 25.0%
!!! GTTTTAAACATTTTGTCACT+AGG - chr5_3:68202719-68202738 None:intergenic 25.0%
! ATATTGAGAACAAAGCTAAA+AGG + chr5_3:68202907-68202926 Msa0827140:intron 25.0%
! CAGCAATTGCAAATTAAATA+TGG + chr5_3:68203087-68203106 Msa0827140:intron 25.0%
! ACAGTCAAAACACTAAAAAA+TGG + chr5_3:68203810-68203829 Msa0827140:intron 25.0%
!!! ATTTTGACTTTCTTCAAATG+TGG + chr5_3:68203909-68203928 Msa0827140:intron 25.0%
! TTGTGCAGAAAATTAATTGT+AGG - chr5_3:68204022-68204041 None:intergenic 25.0%
! CAAAAAAAAAAAAGAGTTGC+GGG + chr5_3:68204125-68204144 Msa0827140:intron 25.0%
! CAGGTCATAAAATATATTCA+TGG - chr5_3:68204366-68204385 None:intergenic 25.0%
!!! TACTTTTTAGGAATCAATAG+AGG + chr5_3:68204758-68204777 Msa0827140:intron 25.0%
!!! ACTTTTTAGGAATCAATAGA+GGG + chr5_3:68204759-68204778 Msa0827140:intron 25.0%
!! AATCAATAGAGGGTAATTTT+GGG + chr5_3:68204769-68204788 Msa0827140:intron 25.0%
!!! TTTTTAGGTTTGTGTGATAT+TGG + chr5_3:68204839-68204858 Msa0827140:intron 25.0%
! TGAGAAAATATTTCAAGACA+TGG + chr5_3:68204956-68204975 Msa0827140:intron 25.0%
! GAGAAAATATTTCAAGACAT+GGG + chr5_3:68204957-68204976 Msa0827140:intron 25.0%
! TTTGACTCAACTTTCTAATA+GGG + chr5_3:68205170-68205189 Msa0827140:intron 25.0%
! TCAAAATCCAAAATTGGATT+TGG + chr5_3:68205209-68205228 Msa0827140:intron 25.0%
!! AAAACTAGAGGTAATTTTGT+AGG - chr5_3:68205271-68205290 None:intergenic 25.0%
!!! GGATTTTAACATAAAACTAG+AGG - chr5_3:68205283-68205302 None:intergenic 25.0%
! TGTTGTCACAAATAGAAATA+AGG - chr5_3:68205444-68205463 None:intergenic 25.0%
! AAGCATACAATAAGCTATAT+AGG - chr5_3:68205488-68205507 None:intergenic 25.0%
!! AATTTTTCTCTGAATGCTAA+TGG + chr5_3:68205950-68205969 Msa0827140:CDS 25.0%
!! AATAACATTTTCAGTTTGTG+AGG - chr5_3:68206134-68206153 None:intergenic 25.0%
!!! GAAAATGTTATTTTGGCAAT+TGG + chr5_3:68206142-68206161 Msa0827140:CDS 25.0%
! GACAAATTTAGGTGATAAAT+AGG + chr5_3:68206613-68206632 Msa0827140:intron 25.0%
! ATGAATATGTTGTCTTCATT+TGG + chr5_3:68206764-68206783 Msa0827140:intron 25.0%
! ACCTCAATTTATAACTTAGT+TGG + chr5_3:68206824-68206843 Msa0827140:intron 25.0%
! TCCAACTAAGTTATAAATTG+AGG - chr5_3:68206828-68206847 None:intergenic 25.0%
! AGTTAAATATCAGAAAACAC+AGG - chr5_3:68207114-68207133 None:intergenic 25.0%
!! TGTGTTTTCTGATATTTAAC+TGG + chr5_3:68207113-68207132 Msa0827140:intron 25.0%
!!! TATATATATCCTTTTGGAAC+AGG + chr5_3:68207380-68207399 Msa0827140:intron 25.0%
! AGTTGTTAGTAGTTTATTCT+TGG + chr5_3:68207573-68207592 Msa0827140:intron 25.0%
! AAATAAAAAAACACATGGAC+TGG - chr5_3:68207623-68207642 None:intergenic 25.0%
!!! CTGAATTCATCATATTTTAG+AGG - chr5_3:68207649-68207668 None:intergenic 25.0%
!!! ATACTGATTCAAAGTAATCA+TGG - chr5_3:68207724-68207743 None:intergenic 25.0%
!! AATTTTAAACCTACTGCAAA+AGG - chr5_3:68207801-68207820 None:intergenic 25.0%
! TGACTACATTAAAATTGCTT+AGG - chr5_3:68207935-68207954 None:intergenic 25.0%
! TGACTACATTAAAATTGCTT+AGG - chr5_3:68207935-68207954 None:intergenic 25.0%
! CAAGTCAACATCAATATTTA+TGG - chr5_3:68208163-68208182 None:intergenic 25.0%
!! AAAAGATAAAAGCACAAACA+GGG - chr5_3:68208268-68208287 None:intergenic 25.0%
!! TGTTTGTGCTTTTATCTTTT+GGG + chr5_3:68208268-68208287 Msa0827140:intron 25.0%
! GAAATGTAACAATTAAATGG+AGG + chr5_3:68208345-68208364 Msa0827140:intron 25.0%
! TGTTGCTGATCTTATATAAA+AGG + chr5_3:68208703-68208722 Msa0827140:exon 25.0%
! GTTGCTGATCTTATATAAAA+GGG + chr5_3:68208704-68208723 Msa0827140:exon 25.0%
!! CTGAGATTAATTTTGTAAAC+TGG + chr5_3:68208909-68208928 Msa0827140:three_prime_UTR 25.0%
CTAATTGAAACATAACAGAG+AGG - chr5_3:68202169-68202188 None:intergenic 30.0%
GACCTAGATTTAAGAAATCA+AGG + chr5_3:68202298-68202317 Msa0827140:intron 30.0%
! CTTTGAATAAGGCACTATAT+TGG + chr5_3:68202467-68202486 Msa0827140:intron 30.0%
!!! TTTTTTACCAACAACGAAAG+AGG + chr5_3:68202524-68202543 Msa0827140:intron 30.0%
GTTGTGATCATATGATGATA+AGG - chr5_3:68202571-68202590 None:intergenic 30.0%
AAGGATCTTCAAGATATAGA+TGG - chr5_3:68202695-68202714 None:intergenic 30.0%
GTGAAACCATATACTAAAGT+GGG - chr5_3:68202774-68202793 None:intergenic 30.0%
! AGCTGAAATTTGGTTTACAA+GGG - chr5_3:68202854-68202873 None:intergenic 30.0%
AGTCTCATTATGTTAAGCAT+AGG - chr5_3:68203158-68203177 None:intergenic 30.0%
TATGGAAAGAAAACTGAAAG+AGG - chr5_3:68203219-68203238 None:intergenic 30.0%
AGTTTCACATTTAACCTGTT+AGG - chr5_3:68203382-68203401 None:intergenic 30.0%
ATAATGAGAAACTAAAGGCA+AGG + chr5_3:68203449-68203468 Msa0827140:intron 30.0%
! TATTCATGGTTTTCGTTCAA+TGG - chr5_3:68204352-68204371 None:intergenic 30.0%
TCATGATCAAATTAAGCTTC+AGG - chr5_3:68204385-68204404 None:intergenic 30.0%
! GAAGCTTAATTTGATCATGA+CGG + chr5_3:68204385-68204404 Msa0827140:intron 30.0%
ACTATAGAATAGATCTCTGA+TGG - chr5_3:68204502-68204521 None:intergenic 30.0%
! GAATCAATAGAGGGTAATTT+TGG + chr5_3:68204768-68204787 Msa0827140:intron 30.0%
!! TTGGGTTGAATTAACAGATT+AGG + chr5_3:68204787-68204806 Msa0827140:intron 30.0%
! TGGGTTGAATTAACAGATTA+GGG + chr5_3:68204788-68204807 Msa0827140:intron 30.0%
AACAAATCATGTGTCTTGAA+GGG - chr5_3:68205013-68205032 None:intergenic 30.0%
TAACAAATCATGTGTCTTGA+AGG - chr5_3:68205014-68205033 None:intergenic 30.0%
!! CAAGACACATGATTTGTTAT+AGG + chr5_3:68205015-68205034 Msa0827140:intron 30.0%
TTCATTAACAAACCACATGT+GGG - chr5_3:68205052-68205071 None:intergenic 30.0%
ATTCATTAACAAACCACATG+TGG - chr5_3:68205053-68205072 None:intergenic 30.0%
!! TATAAAGTGTGTTGTTTGCT+TGG + chr5_3:68205096-68205115 Msa0827140:intron 30.0%
GTTTGACTCAACTTTCTAAT+AGG + chr5_3:68205169-68205188 Msa0827140:intron 30.0%
AGAGGATCAAAATCCAAAAT+TGG + chr5_3:68205203-68205222 Msa0827140:intron 30.0%
AAATCCAAAATTGGATTTGG+AGG + chr5_3:68205212-68205231 Msa0827140:intron 30.0%
AATCCAAAATTGGATTTGGA+GGG + chr5_3:68205213-68205232 Msa0827140:intron 30.0%
ATAGGAGATGTTGTCAAAAA+AGG - chr5_3:68205470-68205489 None:intergenic 30.0%
! AGGTATACTGTCTATGATTT+TGG + chr5_3:68205989-68206008 Msa0827140:intron 30.0%
!! GTCAATTAGTTTGCAATTGT+TGG - chr5_3:68206031-68206050 None:intergenic 30.0%
! TTTCTTTCTTTTTCTCGTCA+AGG + chr5_3:68206358-68206377 Msa0827140:intron 30.0%
ATAAAATGACAGAGAAGGTA+AGG - chr5_3:68206500-68206519 None:intergenic 30.0%
!!! ACCTTCTCTGTCATTTTATT+TGG + chr5_3:68206501-68206520 Msa0827140:intron 30.0%
TCCAAATAAAATGACAGAGA+AGG - chr5_3:68206505-68206524 None:intergenic 30.0%
!!! CTCTGTCATTTTATTTGGAA+TGG + chr5_3:68206506-68206525 Msa0827140:intron 30.0%
CTACTTAGCAAAGTTGTAAT+TGG - chr5_3:68206558-68206577 None:intergenic 30.0%
ACTAAAACCAATCATCAAAC+AGG - chr5_3:68206660-68206679 None:intergenic 30.0%
AAAATCTGTATCAGCTATAG+AGG - chr5_3:68206743-68206762 None:intergenic 30.0%
AGGTAAAGTTTCAGATGATT+GGG - chr5_3:68206808-68206827 None:intergenic 30.0%
ACTTAGTTGGATGTATCTTT+AGG + chr5_3:68206837-68206856 Msa0827140:intron 30.0%
CTTAGTTGGATGTATCTTTA+GGG + chr5_3:68206838-68206857 Msa0827140:intron 30.0%
! TTACTCTTGTTGTAAACTTG+TGG + chr5_3:68206894-68206913 Msa0827140:intron 30.0%
ATTCAGAGACTACATAAGTT+TGG - chr5_3:68206942-68206961 None:intergenic 30.0%
! TCAATTCATCACGTTTTACA+AGG - chr5_3:68207063-68207082 None:intergenic 30.0%
AAAACGTGATGAATTGACAT+TGG + chr5_3:68207066-68207085 Msa0827140:CDS 30.0%
! ATTTTCATTTACCTTTCGCT+TGG - chr5_3:68207281-68207300 None:intergenic 30.0%
! TATAAAGGTTCTTTAGGAAC+AGG + chr5_3:68207301-68207320 Msa0827140:intron 30.0%
AAGAGAAAGAGATGCAATTA+TGG + chr5_3:68207473-68207492 Msa0827140:CDS 30.0%
!! TATTGATAACGACTGATGTT+TGG + chr5_3:68207523-68207542 Msa0827140:CDS 30.0%
!! ATTGATAACGACTGATGTTT+GGG + chr5_3:68207524-68207543 Msa0827140:CDS 30.0%
GGCACAAATAAAAAAACACA+TGG - chr5_3:68207628-68207647 None:intergenic 30.0%
ATCAAATTCCGTGTAAAACT+GGG - chr5_3:68207829-68207848 None:intergenic 30.0%
! CAAAAGATAAAAGCACAAAC+AGG - chr5_3:68208269-68208288 None:intergenic 30.0%
! CTGTTTGTGCTTTTATCTTT+TGG + chr5_3:68208267-68208286 Msa0827140:intron 30.0%
! TCTGAAGTAAGTAGTTAGTA+TGG + chr5_3:68208532-68208551 Msa0827140:intron 30.0%
ATAAGATCAGCAACATTCAT+CGG - chr5_3:68208698-68208717 None:intergenic 30.0%
GTGTTTGTCAAATTTATGCT+AGG + chr5_3:68208752-68208771 Msa0827140:three_prime_UTR 30.0%
GTCAAATTTATGCTAGGAAT+TGG + chr5_3:68208758-68208777 Msa0827140:three_prime_UTR 30.0%
CTTATGAAACTCTTGACATA+TGG + chr5_3:68208820-68208839 Msa0827140:three_prime_UTR 30.0%
!!! GTTTACTTTTTTTGCCGATA+CGG + chr5_3:68208886-68208905 Msa0827140:three_prime_UTR 30.0%
AAAATTAATCTCAGCCGTAT+CGG - chr5_3:68208903-68208922 None:intergenic 30.0%
ATTCAGAGCTTCGATAAGAT+GGG + chr5_3:68201930-68201949 Msa0827140:CDS 35.0%
AAGGTTTCTCAAAACCGTAT+TGG - chr5_3:68201986-68202005 None:intergenic 35.0%
! CGGAAACTTGAGTAAGTTTT+AGG + chr5_3:68202193-68202212 Msa0827140:intron 35.0%
AACAATACCAAACACGTTTG+TGG - chr5_3:68202368-68202387 None:intergenic 35.0%
! AAACATTTTGTCACTAGGGA+AGG - chr5_3:68202714-68202733 None:intergenic 35.0%
TGGATTCCCACTTTAGTATA+TGG + chr5_3:68202765-68202784 Msa0827140:intron 35.0%
CGTGAAACCATATACTAAAG+TGG - chr5_3:68202775-68202794 None:intergenic 35.0%
! CAGCTGAAATTTGGTTTACA+AGG - chr5_3:68202855-68202874 None:intergenic 35.0%
GAATTCTGACAGCTGAAATT+TGG - chr5_3:68202864-68202883 None:intergenic 35.0%
ATGCTTACGTTGGAATATGT+GGG - chr5_3:68203019-68203038 None:intergenic 35.0%
! CAGACTACAGTTTTCAATGA+AGG + chr5_3:68203337-68203356 Msa0827140:intron 35.0%
!!! CATTTTTTTGGCATCCTAAC+AGG + chr5_3:68203365-68203384 Msa0827140:intron 35.0%
ACAGGTTAAATGTGAAACTG+TGG + chr5_3:68203383-68203402 Msa0827140:intron 35.0%
! AGTTTTGCGGAGAAAATGAA+AGG + chr5_3:68203731-68203750 Msa0827140:intron 35.0%
! GTTTTGCGGAGAAAATGAAA+GGG + chr5_3:68203732-68203751 Msa0827140:intron 35.0%
CAAATGTGGAATAGAGACAA+AGG + chr5_3:68203923-68203942 Msa0827140:intron 35.0%
! TAGGCATTAGTCTGAAGATT+GGG - chr5_3:68204003-68204022 None:intergenic 35.0%
AAAAAAAAAGAGTTGCGGGA+AGG + chr5_3:68204129-68204148 Msa0827140:intron 35.0%
! CTTAATTTGATCATGACGGT+TGG + chr5_3:68204389-68204408 Msa0827140:intron 35.0%
ATGACGGTTGGATTTGAATA+AGG + chr5_3:68204401-68204420 Msa0827140:intron 35.0%
!! TTGTTTTACACGATCTCTGA+TGG - chr5_3:68204555-68204574 None:intergenic 35.0%
TCAGAGATCGTGTAAAACAA+AGG + chr5_3:68204555-68204574 Msa0827140:intron 35.0%
! AACAGATTAGGGTTTTCCAA+TGG + chr5_3:68204799-68204818 Msa0827140:intron 35.0%
TGACGTGGATTTAAGAAATG+AGG + chr5_3:68204863-68204882 Msa0827140:intron 35.0%
GACGTGGATTTAAGAAATGA+GGG + chr5_3:68204864-68204883 Msa0827140:intron 35.0%
!!! TTTTTAATTTGGCTCCTCCA+AGG + chr5_3:68204912-68204931 Msa0827140:intron 35.0%
!!! TTTTAATTTGGCTCCTCCAA+GGG + chr5_3:68204913-68204932 Msa0827140:intron 35.0%
ACTCAACTTTCTAATAGGGA+AGG + chr5_3:68205174-68205193 Msa0827140:intron 35.0%
CTCAACTTTCTAATAGGGAA+GGG + chr5_3:68205175-68205194 Msa0827140:intron 35.0%
AAAATTGGATTTGGAGGGAA+GGG + chr5_3:68205218-68205237 Msa0827140:intron 35.0%
TACAACAACAATGAAGAGAG+GGG - chr5_3:68205377-68205396 None:intergenic 35.0%
CTACAACAACAATGAAGAGA+GGG - chr5_3:68205378-68205397 None:intergenic 35.0%
ACTACAACAACAATGAAGAG+AGG - chr5_3:68205379-68205398 None:intergenic 35.0%
! CTCTTCATTGTTGTTGTAGT+TGG + chr5_3:68205379-68205398 Msa0827140:intron 35.0%
! AAAGTGCATGTTTTGTACCA+CGG + chr5_3:68205588-68205607 Msa0827140:intron 35.0%
TATATTCACCAGATGAGTGA+GGG - chr5_3:68205858-68205877 None:intergenic 35.0%
TTATATTCACCAGATGAGTG+AGG - chr5_3:68205859-68205878 None:intergenic 35.0%
TTGTAATTTGAACAGGTTGC+AGG + chr5_3:68206078-68206097 Msa0827140:intron 35.0%
TTTAATTGTGTCTCCGACAA+GGG + chr5_3:68206102-68206121 Msa0827140:CDS 35.0%
! TTTTGATCATGTCAAGGACT+CGG - chr5_3:68206273-68206292 None:intergenic 35.0%
! TTCTCCTTTTGATCATGTCA+AGG - chr5_3:68206279-68206298 None:intergenic 35.0%
TTTGCTAAGTAGACTTCACA+AGG + chr5_3:68206566-68206585 Msa0827140:intron 35.0%
GGTGATAAATAGGGTTAAAG+AGG + chr5_3:68206623-68206642 Msa0827140:intron 35.0%
TAACAACATAATTTCCCCTC+AGG - chr5_3:68206715-68206734 None:intergenic 35.0%
GAGGTAAAGTTTCAGATGAT+TGG - chr5_3:68206809-68206828 None:intergenic 35.0%
! TACGCTACCTCATGAAATTT+TGG + chr5_3:68207000-68207019 Msa0827140:CDS 35.0%
GTCATCTCCAAAATTTCATG+AGG - chr5_3:68207010-68207029 None:intergenic 35.0%
TTATGTTGATGTTGAAAGGG+AGG + chr5_3:68207183-68207202 Msa0827140:CDS 35.0%
GAATATAACAGCTTGAGTGA+TGG - chr5_3:68207251-68207270 None:intergenic 35.0%
!!! ATATATCCTTTTGGAACAGG+TGG + chr5_3:68207383-68207402 Msa0827140:intron 35.0%
TTCACTATCTCATCAATGCA+CGG + chr5_3:68207438-68207457 Msa0827140:CDS 35.0%
ATTGCATCTCTTTCTCTTTG+AGG - chr5_3:68207471-68207490 None:intergenic 35.0%
ATTATGGATGAATTTCGTGC+TGG + chr5_3:68207489-68207508 Msa0827140:CDS 35.0%
!!! AAAAACTAGCCTTTTGCAGT+AGG + chr5_3:68207789-68207808 Msa0827140:intron 35.0%
GATCAAATTCCGTGTAAAAC+TGG - chr5_3:68207830-68207849 None:intergenic 35.0%
! GTCAGCAATTACTGTGTTTT+GGG - chr5_3:68208064-68208083 None:intergenic 35.0%
ATATCTTCCTACTTCTGTTC+AGG - chr5_3:68208086-68208105 None:intergenic 35.0%
!! TGTGCTTTTATCTTTTGGGT+CGG + chr5_3:68208272-68208291 Msa0827140:intron 35.0%
TGATAACAGAAACAAGTGCA+CGG - chr5_3:68208390-68208409 None:intergenic 35.0%
ATGTACAGCTCTCGATTATT+TGG - chr5_3:68208441-68208460 None:intergenic 35.0%
AAAAGTAAACCTTCATCCCT+GGG - chr5_3:68208876-68208895 None:intergenic 35.0%
AAAAAGTAAACCTTCATCCC+TGG - chr5_3:68208877-68208896 None:intergenic 35.0%
TGTCCATTATCTTACATGCA+AGG + chr5_3:68208945-68208964 Msa0827140:three_prime_UTR 35.0%
GATTCAGAGCTTCGATAAGA+TGG + chr5_3:68201929-68201948 Msa0827140:CDS 40.0%
ATCAAAGACGATTTACTGCG+TGG + chr5_3:68201954-68201973 Msa0827140:CDS 40.0%
CTGCGTGGAATTTACCAATA+CGG + chr5_3:68201969-68201988 Msa0827140:CDS 40.0%
ACCCTGAATGATAGGTAGAA+CGG - chr5_3:68202027-68202046 None:intergenic 40.0%
AAGAGGAACTCACTCTTTGA+CGG - chr5_3:68202132-68202151 None:intergenic 40.0%
AGGAGAGAGAAGATGAAAAG+AGG - chr5_3:68202149-68202168 None:intergenic 40.0%
! GCTTTATGTTTCTGTGACAC+TGG + chr5_3:68202273-68202292 Msa0827140:intron 40.0%
ACCAACAACGAAAGAGGTTA+AGG + chr5_3:68202530-68202549 Msa0827140:intron 40.0%
TCCTTAACCTCTTTCGTTGT+TGG - chr5_3:68202534-68202553 None:intergenic 40.0%
! ATGTTGTGCGTGATGGAAAT+TGG - chr5_3:68202746-68202765 None:intergenic 40.0%
AATTTCCATCACGCACAACA+TGG + chr5_3:68202745-68202764 Msa0827140:intron 40.0%
GATGCTTACGTTGGAATATG+TGG - chr5_3:68203020-68203039 None:intergenic 40.0%
CAAATGACTGATGCTTACGT+TGG - chr5_3:68203029-68203048 None:intergenic 40.0%
CAACGTAAGCATCAGTCATT+TGG + chr5_3:68203027-68203046 Msa0827140:intron 40.0%
TTTGTGCAAAGTCATGAAGC+AGG + chr5_3:68203669-68203688 Msa0827140:intron 40.0%
!! GTGTCATTGACACTTTTGTG+TGG - chr5_3:68203864-68203883 None:intergenic 40.0%
AAGATTGGGAAGACAACTTC+TGG - chr5_3:68203989-68204008 None:intergenic 40.0%
! GTAGGCATTAGTCTGAAGAT+TGG - chr5_3:68204004-68204023 None:intergenic 40.0%
!!! GGTCTCTGTCATTTTGTTGA+AGG + chr5_3:68204576-68204595 Msa0827140:intron 40.0%
! GATTAGGGTTTTCCAATGGT+TGG + chr5_3:68204803-68204822 Msa0827140:intron 40.0%
! CAATGGTTGGAGTTGTTTCA+GGG + chr5_3:68204816-68204835 Msa0827140:intron 40.0%
!! GGAGTTGTTTCAGGGTTTTT+AGG + chr5_3:68204824-68204843 Msa0827140:intron 40.0%
TTGTGTGATATTGGATGACG+TGG + chr5_3:68204848-68204867 Msa0827140:intron 40.0%
GTGCATATAATACCCACATG+TGG + chr5_3:68205037-68205056 Msa0827140:intron 40.0%
! GTTTGCTTGGTCTGTTTTGT+TGG + chr5_3:68205109-68205128 Msa0827140:intron 40.0%
AACTTTCTAATAGGGAAGGG+AGG + chr5_3:68205178-68205197 Msa0827140:intron 40.0%
ACTTTCTAATAGGGAAGGGA+GGG + chr5_3:68205179-68205198 Msa0827140:intron 40.0%
! CTTCCCTCCAAATCCAATTT+TGG - chr5_3:68205219-68205238 None:intergenic 40.0%
CAAAATTGGATTTGGAGGGA+AGG + chr5_3:68205217-68205236 Msa0827140:intron 40.0%
GAGACGCACGAGTTAAATAT+TGG - chr5_3:68205304-68205323 None:intergenic 40.0%
! TAGTTGGCACTTTGACTTCT+CGG + chr5_3:68205395-68205414 Msa0827140:intron 40.0%
AGTTCAACATGCCCAAATCA+AGG - chr5_3:68205676-68205695 None:intergenic 40.0%
GATTTGGGCATGTTGAACTA+TGG + chr5_3:68205677-68205696 Msa0827140:intron 40.0%
TATTTGAGAATGCCCTGTGA+TGG + chr5_3:68205794-68205813 Msa0827140:intron 40.0%
AGTATACCTGTCATGGTCAT+AGG - chr5_3:68205978-68205997 None:intergenic 40.0%
CATAGACAGTATACCTGTCA+TGG - chr5_3:68205985-68206004 None:intergenic 40.0%
CTTTAATTGTGTCTCCGACA+AGG + chr5_3:68206101-68206120 Msa0827140:CDS 40.0%
GACACAAGGAAACTTGAACA+CGG + chr5_3:68206220-68206239 Msa0827140:CDS 40.0%
GAGTCCTTGACATGATCAAA+AGG + chr5_3:68206272-68206291 Msa0827140:CDS 40.0%
TGTGTATAGATATCTCCCTC+CGG + chr5_3:68206461-68206480 Msa0827140:CDS 40.0%
! TGATGTGCCTGTTTGATGAT+TGG + chr5_3:68206650-68206669 Msa0827140:intron 40.0%
CTCATTTCCACTCCTTCATA+TGG - chr5_3:68206692-68206711 None:intergenic 40.0%
AGTTTGGAAAGAATGCAGAC+AGG - chr5_3:68206926-68206945 None:intergenic 40.0%
AGTTTATGACAGATCCTGTG+AGG + chr5_3:68207035-68207054 Msa0827140:CDS 40.0%
ACGTGATGAATTGACATTGG+AGG + chr5_3:68207069-68207088 Msa0827140:CDS 40.0%
TTGATGTTGAAAGGGAGGAA+TGG + chr5_3:68207188-68207207 Msa0827140:CDS 40.0%
ATTCTGTAACACCAAGCGAA+AGG + chr5_3:68207267-68207286 Msa0827140:CDS 40.0%
! ATTTCACGCCCAGTTTTACA+CGG + chr5_3:68207818-68207837 Msa0827140:intron 40.0%
! AAGCTTTATCCCACTAAGTG+GGG - chr5_3:68207864-68207883 None:intergenic 40.0%
! CAAGCTTTATCCCACTAAGT+GGG - chr5_3:68207865-68207884 None:intergenic 40.0%
! GGTCAGCAATTACTGTGTTT+TGG - chr5_3:68208065-68208084 None:intergenic 40.0%
ATGTGCTCAAGCATTCCAAT+TGG + chr5_3:68208183-68208202 Msa0827140:intron 40.0%
TGTGCTCAAGCATTCCAATT+GGG + chr5_3:68208184-68208203 Msa0827140:intron 40.0%
!! GTGCTTTTATCTTTTGGGTC+GGG + chr5_3:68208273-68208292 Msa0827140:intron 40.0%
!! TGCTTTTATCTTTTGGGTCG+GGG + chr5_3:68208274-68208293 Msa0827140:intron 40.0%
!! GTGCACTTGTTTCTGTTATC+AGG + chr5_3:68208389-68208408 Msa0827140:intron 40.0%
ATCGAGAGCTGTACATTCAT+CGG + chr5_3:68208445-68208464 Msa0827140:CDS 40.0%
!! ACGTTTTGGACGAAAGGTAT+TGG + chr5_3:68208482-68208501 Msa0827140:intron 40.0%
!!! CGTTTTGGACGAAAGGTATT+GGG + chr5_3:68208483-68208502 Msa0827140:intron 40.0%
CTTATAGTTGGGCCTAATCA+TGG + chr5_3:68208578-68208597 Msa0827140:intron 40.0%
AAGGGCAATGCAGTATATGT+TGG + chr5_3:68208722-68208741 Msa0827140:three_prime_UTR 40.0%
CCACCTTGCATGTAAGATAA+TGG - chr5_3:68208951-68208970 None:intergenic 40.0%
CCATTATCTTACATGCAAGG+TGG + chr5_3:68208948-68208967 Msa0827140:three_prime_UTR 40.0%
TCAAAGCTTCGAGACATCGA+AGG + chr5_3:68201896-68201915 Msa0827140:CDS 45.0%
CAAAGCTTCGAGACATCGAA+GGG + chr5_3:68201897-68201916 Msa0827140:CDS 45.0%
TGCCGTTCTACCTATCATTC+AGG + chr5_3:68202022-68202041 Msa0827140:CDS 45.0%
GCCGTTCTACCTATCATTCA+GGG + chr5_3:68202023-68202042 Msa0827140:CDS 45.0%
AACAGTGAGAGCAATCATGG+AGG - chr5_3:68202090-68202109 None:intergenic 45.0%
GCAAACAGTGAGAGCAATCA+TGG - chr5_3:68202093-68202112 None:intergenic 45.0%
TACCAAACACGTTTGTGGAG+TGG - chr5_3:68202363-68202382 None:intergenic 45.0%
! ACGACGGCTATGTTTGTTGA+CGG + chr5_3:68202427-68202446 Msa0827140:intron 45.0%
TTACGTTGGAATATGTGGGC+AGG - chr5_3:68203015-68203034 None:intergenic 45.0%
CCACTTACTCGGAAAGATGA+CGG - chr5_3:68203600-68203619 None:intergenic 45.0%
TGGGAAGACAACTTCTGGTA+TGG - chr5_3:68203984-68204003 None:intergenic 45.0%
CAGCAGAGGAGAGAAGAAAA+AGG + chr5_3:68204223-68204242 Msa0827140:intron 45.0%
TCGGCATTGTGACAGATCAA+TGG - chr5_3:68204680-68204699 None:intergenic 45.0%
GTTTGCGGTGATACAAGACT+CGG - chr5_3:68204699-68204718 None:intergenic 45.0%
ACTCCACAAATGCGTGTTTG+CGG - chr5_3:68204714-68204733 None:intergenic 45.0%
CCTGAAACAACTCCAACCAT+TGG - chr5_3:68204818-68204837 None:intergenic 45.0%
! CCAATGGTTGGAGTTGTTTC+AGG + chr5_3:68204815-68204834 Msa0827140:intron 45.0%
!! TGCTTGGTCTGTTTTGTTGG+AGG + chr5_3:68205112-68205131 Msa0827140:intron 45.0%
!! TGGTCTGTTTTGTTGGAGGT+AGG + chr5_3:68205116-68205135 Msa0827140:intron 45.0%
!! TCTGTTTTGTTGGAGGTAGG+TGG + chr5_3:68205119-68205138 Msa0827140:intron 45.0%
! TTTTGTTGGAGGTAGGTGGA+GGG + chr5_3:68205123-68205142 Msa0827140:intron 45.0%
TGATTTCTGCAAAACCACCG+TGG - chr5_3:68205608-68205627 None:intergenic 45.0%
!! CGGTGGTTTTGCAGAAATCA+TGG + chr5_3:68205608-68205627 Msa0827140:intron 45.0%
ATGTTGCCAAAGCGGTCTTA+TGG + chr5_3:68205643-68205662 Msa0827140:intron 45.0%
TATGGTGGCTCACCTTGATT+TGG + chr5_3:68205661-68205680 Msa0827140:intron 45.0%
ATGGTGGCTCACCTTGATTT+GGG + chr5_3:68205662-68205681 Msa0827140:intron 45.0%
GTTCTTCTGACCCAATGGAA+TGG - chr5_3:68205889-68205908 None:intergenic 45.0%
GATAGGTTCTTCTGACCCAA+TGG - chr5_3:68205894-68205913 None:intergenic 45.0%
ATACGAGCACATGCATGCAT+TGG + chr5_3:68206178-68206197 Msa0827140:CDS 45.0%
!! AAAGCGTTGGAGAAGACACA+AGG + chr5_3:68206206-68206225 Msa0827140:CDS 45.0%
ACACGGAGTTCATGTAGTGT+CGG + chr5_3:68206237-68206256 Msa0827140:CDS 45.0%
! AGCTATCAAGTTGCTTGTGC+TGG + chr5_3:68206312-68206331 Msa0827140:CDS 45.0%
TCTGATGAAATGCTGAGCAG+AGG + chr5_3:68206417-68206436 Msa0827140:CDS 45.0%
GTAAGGTGAACCTGAAGATC+CGG - chr5_3:68206483-68206502 None:intergenic 45.0%
AGTGACCTGACACCATATGA+AGG + chr5_3:68206677-68206696 Msa0827140:intron 45.0%
! CGTTTTACAAGGATCCTCAC+AGG - chr5_3:68207052-68207071 None:intergenic 45.0%
ATTACCCGCCTCATGATTAC+AGG + chr5_3:68207147-68207166 Msa0827140:intron 45.0%
TTACCCGCCTCATGATTACA+GGG + chr5_3:68207148-68207167 Msa0827140:intron 45.0%
GGTCACTGGTCAAACAAGTT+AGG - chr5_3:68207602-68207621 None:intergenic 45.0%
!! AAAACACATGGACTGGTCAC+TGG - chr5_3:68207616-68207635 None:intergenic 45.0%
TTTATCCCACTAAGTGGGGT+CGG - chr5_3:68207860-68207879 None:intergenic 45.0%
! CCAAGCTTTATCCCACTAAG+TGG - chr5_3:68207866-68207885 None:intergenic 45.0%
CCACTTAGTGGGATAAAGCT+TGG + chr5_3:68207863-68207882 Msa0827140:intron 45.0%
GTGGGATAAAGCTTGGTTGT+TGG + chr5_3:68207870-68207889 Msa0827140:intron 45.0%
TTGCTGACCTGAACAGAAGT+AGG + chr5_3:68208076-68208095 Msa0827140:intron 45.0%
GAGCTGTACATTCATCGGAT+TGG + chr5_3:68208450-68208469 Msa0827140:CDS 45.0%
TTCGTCCAAAACGTCCAGAA+CGG - chr5_3:68208476-68208495 None:intergenic 45.0%
!! TTCTGGACGTTTTGGACGAA+AGG + chr5_3:68208476-68208495 Msa0827140:CDS 45.0%
ACACCCTGCAAACCATGATT+AGG - chr5_3:68208593-68208612 None:intergenic 45.0%
!!! ATTATTATATATTTTTACTA+TGG - chr5_3:68203765-68203784 None:intergenic 5.0%
GCACGCTGTTGAATGGATGA+AGG - chr5_3:68202005-68202024 None:intergenic 50.0%
TAGAACGGCACGCTGTTGAA+TGG - chr5_3:68202012-68202031 None:intergenic 50.0%
ACGTCACGACCCTGAATGAT+AGG - chr5_3:68202035-68202054 None:intergenic 50.0%
GTCATCGCTCAGTCTCAATC+TGG + chr5_3:68202053-68202072 Msa0827140:CDS 50.0%
! GCTCAGTCTCAATCTGGAAC+CGG + chr5_3:68202059-68202078 Msa0827140:CDS 50.0%
AGCAATCATGGAGGACTTGC+CGG - chr5_3:68202081-68202100 None:intergenic 50.0%
GATTGCTCTCACTGTTTGCC+AGG + chr5_3:68202094-68202113 Msa0827140:CDS 50.0%
!! TGACGGAGGTATCAACAACC+TGG - chr5_3:68202115-68202134 None:intergenic 50.0%
AGGAACTCACTCTTTGACGG+AGG - chr5_3:68202129-68202148 None:intergenic 50.0%
CTCCACTCCACAAACGTGTT+TGG + chr5_3:68202358-68202377 Msa0827140:intron 50.0%
! CGACGGCTATGTTTGTTGAC+GGG + chr5_3:68202428-68202447 Msa0827140:intron 50.0%
GGAATCCATGTTGTGCGTGA+TGG - chr5_3:68202753-68202772 None:intergenic 50.0%
GTTGGAATATGTGGGCAGGA+AGG - chr5_3:68203011-68203030 None:intergenic 50.0%
CCGTCATCTTTCCGAGTAAG+TGG + chr5_3:68203597-68203616 Msa0827140:intron 50.0%
TGTCTCTGCTGAACTGACAG+AGG - chr5_3:68204199-68204218 None:intergenic 50.0%
AGCAGAGACAACTTCAGCAG+AGG + chr5_3:68204209-68204228 Msa0827140:intron 50.0%
TCACCGCAAACACGCATTTG+TGG + chr5_3:68204708-68204727 Msa0827140:intron 50.0%
!! GTTTTGTTGGAGGTAGGTGG+AGG + chr5_3:68205122-68205141 Msa0827140:intron 50.0%
TTTGTTGGAGGTAGGTGGAG+GGG + chr5_3:68205124-68205143 Msa0827140:intron 50.0%
TAATAGGGAAGGGAGGGAAG+AGG + chr5_3:68205185-68205204 Msa0827140:intron 50.0%
! GTGCATGTTTTGTACCACGG+TGG + chr5_3:68205591-68205610 Msa0827140:intron 50.0%
CCACCATGATGTTGCCAAAG+CGG + chr5_3:68205635-68205654 Msa0827140:intron 50.0%
AGACCGCTTTGGCAACATCA+TGG - chr5_3:68205641-68205660 None:intergenic 50.0%
! TTGCCAAAGCGGTCTTATGG+TGG + chr5_3:68205646-68205665 Msa0827140:intron 50.0%
AATGCCCTGTGATGGTCAGT+TGG + chr5_3:68205802-68205821 Msa0827140:intron 50.0%
ATGCCCTGTGATGGTCAGTT+GGG + chr5_3:68205803-68205822 Msa0827140:intron 50.0%
! GGTCAGTTGGGCTGTTCTTT+TGG + chr5_3:68205815-68205834 Msa0827140:intron 50.0%
!!! CTTTTGGTTAGCCTGCTCAG+AGG + chr5_3:68205831-68205850 Msa0827140:intron 50.0%
ATGGAGCCTATGACCATGAC+AGG + chr5_3:68205969-68205988 Msa0827140:CDS 50.0%
TGTGTCTCCGACAAGGGAAT+TGG + chr5_3:68206108-68206127 Msa0827140:CDS 50.0%
TGTGAGGCCAATTCCCTTGT+CGG - chr5_3:68206118-68206137 None:intergenic 50.0%
! TGCATTGGAGGCAAAAGCGT+TGG + chr5_3:68206193-68206212 Msa0827140:CDS 50.0%
CACGGAGTTCATGTAGTGTC+GGG + chr5_3:68206238-68206257 Msa0827140:CDS 50.0%
ACGGAGTTCATGTAGTGTCG+GGG + chr5_3:68206239-68206258 Msa0827140:CDS 50.0%
ATATCTCCCTCCGGATCTTC+AGG + chr5_3:68206470-68206489 Msa0827140:CDS 50.0%
CCACTCCTTCATATGGTGTC+AGG - chr5_3:68206685-68206704 None:intergenic 50.0%
CCTGACACCATATGAAGGAG+TGG + chr5_3:68206682-68206701 Msa0827140:intron 50.0%
AAGGAGTGGAAATGAGCCTG+AGG + chr5_3:68206696-68206715 Msa0827140:intron 50.0%
AGGAGTGGAAATGAGCCTGA+GGG + chr5_3:68206697-68206716 Msa0827140:intron 50.0%
!! GGATGTATCTTTAGGGTCCG+TGG + chr5_3:68206845-68206864 Msa0827140:intron 50.0%
CGCACATCACTCCAGTAACT+GGG - chr5_3:68206872-68206891 None:intergenic 50.0%
ACGCACATCACTCCAGTAAC+TGG - chr5_3:68206873-68206892 None:intergenic 50.0%
ATGCCCTGTAATCATGAGGC+GGG - chr5_3:68207154-68207173 None:intergenic 50.0%
GATGCCCTGTAATCATGAGG+CGG - chr5_3:68207155-68207174 None:intergenic 50.0%
CCTGATGCCCTGTAATCATG+AGG - chr5_3:68207158-68207177 None:intergenic 50.0%
! CCTCATGATTACAGGGCATC+AGG + chr5_3:68207155-68207174 Msa0827140:intron 50.0%
!!! TCCTTTTGGAACAGGTGGAC+TGG + chr5_3:68207388-68207407 Msa0827140:intron 50.0%
ACCAGTCCACCTGTTCCAAA+AGG - chr5_3:68207392-68207411 None:intergenic 50.0%
TCGTGGACTTGATGTACAGC+AGG + chr5_3:68207548-68207567 Msa0827140:intron 50.0%
ACTAAGTGGGGTCGGTTACA+TGG - chr5_3:68207852-68207871 None:intergenic 50.0%
ATGTAACCGACCCCACTTAG+TGG + chr5_3:68207851-68207870 Msa0827140:intron 50.0%
TGTAACCGACCCCACTTAGT+GGG + chr5_3:68207852-68207871 Msa0827140:intron 50.0%
AGCACAAGTGCATGCCCAAT+TGG - chr5_3:68208201-68208220 None:intergenic 50.0%
!! TATCTTTTGGGTCGGGGTGA+AGG + chr5_3:68208280-68208299 Msa0827140:intron 50.0%
!! ATTCATCGGATTGGCCGTTC+TGG + chr5_3:68208459-68208478 Msa0827140:CDS 50.0%
!! ATTGGCCGTTCTGGACGTTT+TGG + chr5_3:68208468-68208487 Msa0827140:CDS 50.0%
! TGGGCCTAATCATGGTTTGC+AGG + chr5_3:68208586-68208605 Msa0827140:intron 50.0%
! GGGCCTAATCATGGTTTGCA+GGG + chr5_3:68208587-68208606 Msa0827140:intron 50.0%
TTGTTTGCTCGACTGAACCC+AGG + chr5_3:68208856-68208875 Msa0827140:three_prime_UTR 50.0%
TGTTTGCTCGACTGAACCCA+GGG + chr5_3:68208857-68208876 Msa0827140:three_prime_UTR 50.0%
CCGCTTTGGCAACATCATGG+TGG - chr5_3:68205638-68205657 None:intergenic 55.0%
GAGCCACCATAAGACCGCTT+TGG - chr5_3:68205652-68205671 None:intergenic 55.0%
CAGCCCAACTGACCATCACA+GGG - chr5_3:68205809-68205828 None:intergenic 55.0%
ACAGCCCAACTGACCATCAC+AGG - chr5_3:68205810-68205829 None:intergenic 55.0%
TCAGAGGTCCCTCACTCATC+TGG + chr5_3:68205847-68205866 Msa0827140:CDS 55.0%
CGAGCACATGCATGCATTGG+AGG + chr5_3:68206181-68206200 Msa0827140:CDS 55.0%
ATCATGTCAAGGACTCGGCC+AGG - chr5_3:68206268-68206287 None:intergenic 55.0%
GGTGAACCTGAAGATCCGGA+GGG - chr5_3:68206479-68206498 None:intergenic 55.0%
AGGTGAACCTGAAGATCCGG+AGG - chr5_3:68206480-68206499 None:intergenic 55.0%
GGAGTGGAAATGAGCCTGAG+GGG + chr5_3:68206698-68206717 Msa0827140:intron 55.0%
CACTCCAGTAACTGGGACCA+CGG - chr5_3:68206865-68206884 None:intergenic 55.0%
ACGACTGATGTTTGGGCTCG+TGG + chr5_3:68207531-68207550 Msa0827140:CDS 55.0%
TCGACTGAACCCAGGGATGA+AGG + chr5_3:68208864-68208883 Msa0827140:three_prime_UTR 55.0%
CTCCTCCAAGGGTGAGTGAG+TGG + chr5_3:68204924-68204943 Msa0827140:intron 60.0%
CTCCACTCACTCACCCTTGG+AGG - chr5_3:68204929-68204948 None:intergenic 60.0%
GCTCTCCACTCACTCACCCT+TGG - chr5_3:68204932-68204951 None:intergenic 60.0%
TTGGAGGTAGGTGGAGGGGA+GGG + chr5_3:68205128-68205147 Msa0827140:intron 60.0%
TGAGTGAGGGACCTCTGAGC+AGG - chr5_3:68205845-68205864 None:intergenic 60.0%
! CATGTAGTGTCGGGGACTCC+TGG + chr5_3:68206247-68206266 Msa0827140:CDS 60.0%
GTTGGAGGTAGGTGGAGGGG+AGG + chr5_3:68205127-68205146 Msa0827140:intron 65.0%
GGGTCCGTGGTCCCAGTTAC+TGG + chr5_3:68206858-68206877 Msa0827140:intron 65.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 68201882 68209009 68201882 ID=Msa0827140;Name=Msa0827140
chr5_3 mRNA 68201882 68209009 68201882 ID=Msa0827140-mRNA-1;Parent=Msa0827140;Name=Msa0827140-mRNA-1;_AED=0.19;_eAED=0.21;_QI=0|0.75|0.66|1|1|1|9|288|430
chr5_3 exon 68201882 68202115 68201882 ID=Msa0827140-mRNA-1:exon:21380;Parent=Msa0827140-mRNA-1
chr5_3 exon 68205842 68205990 68205842 ID=Msa0827140-mRNA-1:exon:21381;Parent=Msa0827140-mRNA-1
chr5_3 exon 68206093 68206333 68206093 ID=Msa0827140-mRNA-1:exon:21382;Parent=Msa0827140-mRNA-1
chr5_3 exon 68206411 68206491 68206411 ID=Msa0827140-mRNA-1:exon:21383;Parent=Msa0827140-mRNA-1
chr5_3 exon 68206983 68207090 68206983 ID=Msa0827140-mRNA-1:exon:21384;Parent=Msa0827140-mRNA-1
chr5_3 exon 68207169 68207288 68207169 ID=Msa0827140-mRNA-1:exon:21385;Parent=Msa0827140-mRNA-1
chr5_3 exon 68207402 68207560 68207402 ID=Msa0827140-mRNA-1:exon:21386;Parent=Msa0827140-mRNA-1
chr5_3 exon 68208411 68208497 68208411 ID=Msa0827140-mRNA-1:exon:21387;Parent=Msa0827140-mRNA-1
chr5_3 exon 68208608 68209009 68208608 ID=Msa0827140-mRNA-1:exon:21388;Parent=Msa0827140-mRNA-1
chr5_3 CDS 68201882 68202115 68201882 ID=Msa0827140-mRNA-1:cds;Parent=Msa0827140-mRNA-1
chr5_3 CDS 68205842 68205990 68205842 ID=Msa0827140-mRNA-1:cds;Parent=Msa0827140-mRNA-1
chr5_3 CDS 68206093 68206333 68206093 ID=Msa0827140-mRNA-1:cds;Parent=Msa0827140-mRNA-1
chr5_3 CDS 68206411 68206491 68206411 ID=Msa0827140-mRNA-1:cds;Parent=Msa0827140-mRNA-1
chr5_3 CDS 68206983 68207090 68206983 ID=Msa0827140-mRNA-1:cds;Parent=Msa0827140-mRNA-1
chr5_3 CDS 68207169 68207288 68207169 ID=Msa0827140-mRNA-1:cds;Parent=Msa0827140-mRNA-1
chr5_3 CDS 68207402 68207560 68207402 ID=Msa0827140-mRNA-1:cds;Parent=Msa0827140-mRNA-1
chr5_3 CDS 68208411 68208497 68208411 ID=Msa0827140-mRNA-1:cds;Parent=Msa0827140-mRNA-1
chr5_3 CDS 68208608 68208721 68208608 ID=Msa0827140-mRNA-1:cds;Parent=Msa0827140-mRNA-1
chr5_3 three_prime_UTR 68208722 68209009 68208722 ID=Msa0827140-mRNA-1:three_prime_utr;Parent=Msa0827140-mRNA-1
Gene Sequence

>Msa0827140

ATGGCTATGGCGATTCAAAGCTTCGAGACATCGAAGGGTGTGAATGCGATTCAGAGCTTCGATAAGATGGGAATCAAAGACGATTTACTGCGTGGAATTTACCAATACGGTTTTGAGAAACCTTCATCCATTCAACAGCGTGCCGTTCTACCTATCATTCAGGGTCGTGACGTCATCGCTCAGTCTCAATCTGGAACCGGCAAGTCCTCCATGATTGCTCTCACTGTTTGCCAGCCTGCTCAGAGGTCCCTCACTCATCTGGTGAATATAAATTGTGACCATTCCATTGGGTCAGAAGAACCTATCAATAAATTTCATAAGTCAAGAGGGCAGCAACTCTCTAATTTTTCTCTGAATGCTAATGGAGCCTATGACCATGACAGGTTGCAGGCTTTAATTGTGTCTCCGACAAGGGAATTGGCCTCACAAACTGAAAATGTTATTTTGGCAATTGGGAGTTTCATTAATATACGAGCACATGCATGCATTGGAGGCAAAAGCGTTGGAGAAGACACAAGGAAACTTGAACACGGAGTTCATGTAGTGTCGGGGACTCCTGGCCGAGTCCTTGACATGATCAAAAGGAGAACATTGTGCACAAGAGCTATCAAGTTGCTTGTGCTGGATGAATCTGATGAAATGCTGAGCAGAGGATTTAAAGATCAAATTTATGATGTGTATAGATATCTCCCTCCGGATCTTCAGGTTTGCTTGATTTCTGCTACGCTACCTCATGAAATTTTGGAGATGACAAATAAGTTTATGACAGATCCTGTGAGGATCCTTGTAAAACGTGATGAATTGACATTGGAGGGCATCAGGCAATTTTATGTTGATGTTGAAAGGGAGGAATGGAAATTTGATACTCTTTGTGATCTTTATGATTATTTGACCATCACTCAAGCTGTTATATTCTGTAACACCAAGCGAAAGGTGGACTGGTTAACTGAAAAAATGCGTAACAATAATTTCACTATCTCATCAATGCACGGTGATATGCCTCAAAGAGAAAGAGATGCAATTATGGATGAATTTCGTGCTGGAACAACTCGAGTATTGATAACGACTGATGTTTGGGCTCGTGGACTTGATGTTTCTCTAGTTATTAATTATGATCTTCCAAATAATCGAGAGCTGTACATTCATCGGATTGGCCGTTCTGGACGTTTTGGACGAAAGGGTGTTGCTATAAATTTTGTGAAAAGGGATGATATCAAGATCTTAAGAGACATCGAGCAATATTACAGTATTCAGATTCTTGATCTGCCGATGAATGTTGCTGATCTTATATAA
Protein sequence

>Msa0827140

MAMAIQSFETSKGVNAIQSFDKMGIKDDLLRGIYQYGFEKPSSIQQRAVLPIIQGRDVIAQSQSGTGKSSMIALTVCQPAQRSLTHLVNINCDHSIGSEEPINKFHKSRGQQLSNFSLNANGAYDHDRLQALIVSPTRELASQTENVILAIGSFINIRAHACIGGKSVGEDTRKLEHGVHVVSGTPGRVLDMIKRRTLCTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCLISATLPHEILEMTNKFMTDPVRILVKRDELTLEGIRQFYVDVEREEWKFDTLCDLYDYLTITQAVIFCNTKRKVDWLTEKMRNNNFTISSMHGDMPQRERDAIMDEFRAGTTRVLITTDVWARGLDVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKRDDIKILRDIEQYYSIQILDLPMNVADLI*